17-03-17 18:09:00.748 -07 000000610 INF: =================== Cycle #10 ===================
17-03-17 18:09:00.758 -07 000000610 INF: Y Motor: Entering MoveAbsStepped (target = 120609 steps, sync = True, waitForSettling = True)
17-03-17 18:09:00.758 -07 000000610 INF: Y Motor: Moving to 75.3806 mm, started at 74.8325 mm, delta = 0.5481 mm
17-03-17 18:09:00.758 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:09:00.758 -07 000000429 INF: FPGA: Recv YRDPOS 153258
17-03-17 18:09:00.768 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:09:00.768 -07 000000610 INF: Y Motor: Encoder = 153258 = motor step 119732.8 = 74.8330 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:09:00.768 -07 000000610 INF: Y Motor: Last commanded position = 74.8526 mm (119764.2 steps), delta from last commanded position = 0.5280 mm (844.8 steps). UsingTableMove = False
17-03-17 18:09:00.768 -07 000000610 INF: Y Motor: Moving to 154379 encoder counts
17-03-17 18:09:00.768 -07 000000610 INF: FPGA: Xmit YMVTO 154379\n [Y Motor]
17-03-17 18:09:00.888 -07 000000462 INF: FPGA: Recv YMVTO 154378 877
17-03-17 18:09:00.888 -07 000000610 INF: FPGA: 'YMVTO 154379' command took 0 ms to send, 110 ms to get response, and 118 ms overall
17-03-17 18:09:00.888 -07 000000610 INF: Y Motor: Position error before settling = -1 encoder counts (0.000 mm)
17-03-17 18:09:00.888 -07 000000610 INF: Y Motor: To move from 74.833 to 75.381 (0.548 mm) should take 876 steps, but required 877 steps (0.548 mm). Slippage = 0.001 mm (0.00%).
17-03-17 18:09:00.888 -07 000000610 INF: Y Motor: FPGA move command 'YMVTO 154379' took 118 ms, distance = 0.548 mm, average velocity = 4.645 mm/sec
17-03-17 18:09:01.568 -07 000000409 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:09:01.568 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 9. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=80, R2=89, Total=169. Warn if over 250 bubbles per interval.
17-03-17 18:09:03.728 -07 000000459 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 10, FrontChillerTemperature: 4.024884,
17-03-17 18:09:03.888 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:09:03.888 -07 000000459 INF: FPGA: Recv YRDPOS 154387
17-03-17 18:09:03.898 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:09:03.898 -07 000000610 INF: Y Motor: Encoder = 154387 = motor step 120614.8 = 75.3843 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:09:03.908 -07 000000610 INF: Y Motor: After move to 75.380580, error = 0.003697, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:09:03.908 -07 000000610 INF: Y Motor: Position error after settling = 8 encoder counts (0.004 mm), Delta during settling = 9 counts (0.004 mm)
17-03-17 18:09:03.908 -07 000000610 INF: Y Motor: Moved to 75.3843 after 3156 ms
17-03-17 18:09:03.918 -07 000000610 INF: =================== Cycle #10, Flow Cell Temp 60° ===================
17-03-17 18:09:03.918 -07 000000610 INF: =================== Cycle #10, Flow Cell Temp 60°, FC temperature to 60° ===================
17-03-17 18:09:04.098 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-17 18:09:04.098 -07 000000462 INF: FPGA: Recv TEC2EN 
17-03-17 18:09:04.108 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:09:04.108 -07 000000610 INF: =================== Cycle #10, Flow Cell Temp 60° ===================
17-03-17 18:09:04.108 -07 000000610 INF: =================== Cycle #10 ===================
17-03-17 18:09:04.108 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 18:09:04.108 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 18:09:04.138 -07 000000610 INF: ReagentValve: Recv 18\r
17-03-17 18:09:04.138 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 24 to 3. Moving 3 positions.
17-03-17 18:09:04.138 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-17 18:09:04.438 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 18:09:04.458 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-17 18:09:04.458 -07 000000610 INF: ReagentValve: Move+ from 24 to 3 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-17 18:09:04.508 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 18:09:04.528 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 18:09:04.528 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 18:09:04.628 -07 000000610 INF: =================== Cycle #10, Pumping Reagent PR2 (3) ===================
17-03-17 18:09:04.628 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1
17-03-17 18:09:04.628 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:09:04.658 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-17 18:09:04.658 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-17 18:09:04.658 -07 000000610 INF: =================== Cycle #10, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 18:09:04.788 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r
17-03-17 18:09:04.828 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:09:06.568 -07 000000547 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 1
17-03-17 18:09:06.568 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 9. Bubbles during last 5000 ms interval: R1=1, R2=0, Total=1. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=81, R2=89, Total=170. Warn if over 250 bubbles per interval.
17-03-17 18:09:07.958 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:09:07.988 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:09:08.408 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:09:08.438 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:09:08.858 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:09:08.888 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:09:08.888 -07 000000610 INF: LanePump: Waited 4059 ms for pump motion to complete
17-03-17 18:09:08.888 -07 000000610 INF: =================== Cycle #10, Pumping Reagent PR2 (3) ===================
17-03-17 18:09:09.018 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:09:09.048 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 18:09:09.048 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 18:09:09.098 -07 000000462 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 10, FrontChillerTemperature: 3.996267,
17-03-17 18:09:09.178 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:09:09.208 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 18:09:09.208 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 18:09:09.208 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 18:09:09.338 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 18:09:09.368 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:09:09.798 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:09:09.828 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:09:09.828 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 18:09:09.828 -07 000000610 INF: =================== Cycle #10 ===================
17-03-17 18:09:11.048 -07 000000610 INF: AsyncDelayTimer waited 1218ms
17-03-17 18:09:11.048 -07 000000610 INF: ReagentValve: Go to position 4 - PumpToFlowcell start
17-03-17 18:09:11.048 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 18:09:11.068 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 18:09:11.068 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 3 to 4. Moving 1 positions.
17-03-17 18:09:11.068 -07 000000610 INF: ReagentValve: Xmit +04\r
17-03-17 18:09:11.198 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 18:09:11.218 -07 000000610 INF: ReagentValve: Recv 00CD\r
17-03-17 18:09:11.218 -07 000000610 INF: ReagentValve: Move+ from 3 to 4 took 205 steps, expected 204. Error = 1 steps (0.5%)
17-03-17 18:09:11.268 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 18:09:11.288 -07 000000610 INF: ReagentValve: Recv 04\r
17-03-17 18:09:11.288 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 18:09:11.388 -07 000000610 INF: =================== Cycle #10, Pumping Reagent CMS (4) ===================
17-03-17 18:09:11.388 -07 000000610 INF: LanePump: Pumping from 4, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-17 18:09:11.388 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:09:11.418 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 18:09:11.418 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 18:09:11.418 -07 000000610 INF: =================== Cycle #10, Pumping Reagent CMS (4), Aspirating port InputPort ===================
17-03-17 18:09:11.548 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-17 18:09:11.568 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 0
17-03-17 18:09:11.568 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 9. Bubbles during last 5000 ms interval: R1=0, R2=1, Total=1. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=81, R2=90, Total=171. Warn if over 250 bubbles per interval.
17-03-17 18:09:11.588 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:09:13.028 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:09:13.058 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:09:13.478 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:09:13.508 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:09:13.508 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-17 18:09:13.508 -07 000000610 INF: =================== Cycle #10, Pumping Reagent CMS (4) ===================
17-03-17 18:09:13.638 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:09:13.668 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 18:09:13.668 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 18:09:13.798 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:09:13.828 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 18:09:13.828 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 18:09:13.828 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 18:09:13.958 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 18:09:13.988 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:09:14.418 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:09:14.448 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:09:14.448 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 18:09:14.448 -07 000000610 INF: =================== Cycle #10 ===================
17-03-17 18:09:14.468 -07 000000431 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 10, FrontChillerTemperature: 4.004458,
17-03-17 18:09:15.668 -07 000000610 INF: AsyncDelayTimer waited 1218ms
17-03-17 18:09:15.668 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 18:09:15.668 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 18:09:15.688 -07 000000610 INF: ReagentValve: Recv 04\r
17-03-17 18:09:15.688 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 4 to 3. Moving 1 positions.
17-03-17 18:09:15.688 -07 000000610 INF: ReagentValve: Xmit -03\r
17-03-17 18:09:15.838 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 18:09:15.858 -07 000000610 INF: ReagentValve: Recv 00E1\r
17-03-17 18:09:15.858 -07 000000610 INF: ReagentValve: Move- from 4 to 3 took 225 steps, expected 204. Error = 21 steps (10.3%)
17-03-17 18:09:15.908 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 18:09:15.928 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 18:09:15.928 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 18:09:16.028 -07 000000610 INF: =================== Cycle #10, Pumping Reagent PR2 (3) ===================
17-03-17 18:09:16.028 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-17 18:09:16.028 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:09:16.058 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 18:09:16.058 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 18:09:16.058 -07 000000610 INF: =================== Cycle #10, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 18:09:16.188 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-17 18:09:16.228 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:09:16.568 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:09:16.568 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 9. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=81, R2=90, Total=171. Warn if over 250 bubbles per interval.
17-03-17 18:09:17.098 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:09:17.128 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:09:17.128 -07 000000610 INF: LanePump: Waited 900 ms for pump motion to complete
17-03-17 18:09:17.128 -07 000000610 INF: =================== Cycle #10, Pumping Reagent PR2 (3) ===================
17-03-17 18:09:17.258 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:09:17.288 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 18:09:17.288 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 18:09:17.418 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:09:17.448 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 18:09:17.448 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 18:09:17.448 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 18:09:17.578 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 18:09:17.608 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:09:18.038 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:09:18.068 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:09:18.068 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 18:09:18.068 -07 000000610 INF: =================== Cycle #10 ===================
17-03-17 18:09:18.068 -07 000000431 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 18:09:18.068 -07 000000431 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-17 18:09:18.068 -07 000000576 INF: WaitCommand(10000) start
17-03-17 18:09:19.288 -07 000000431 INF: AsyncDelayTimer waited 1216ms
17-03-17 18:09:19.288 -07 000000431 INF: LanePump: Xmit /1?\r
17-03-17 18:09:19.318 -07 000000431 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 18:09:19.318 -07 000000431 INF: LanePump: Current Position of Pump is: 1110
17-03-17 18:09:19.448 -07 000000431 INF: LanePump: Xmit /1V1500OA0R\r
17-03-17 18:09:19.488 -07 000000431 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:09:19.848 -07 000000459 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 10, FrontChillerTemperature: 4.014009,
17-03-17 18:09:21.018 -07 000000431 INF: LanePump: Xmit /1Q\r
17-03-17 18:09:21.048 -07 000000431 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:09:21.468 -07 000000431 INF: LanePump: Xmit /1Q\r
17-03-17 18:09:21.498 -07 000000431 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:09:21.498 -07 000000431 INF: LanePump: Waited 2009 ms for pump motion to complete
17-03-17 18:09:21.498 -07 000000431 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 18:09:21.498 -07 000000431 INF: ===================  ===================
17-03-17 18:09:21.568 -07 000000431 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 2
17-03-17 18:09:21.568 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 9. Bubbles during last 5000 ms interval: R1=2, R2=0, Total=2. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=83, R2=90, Total=173. Warn if over 250 bubbles per interval.
17-03-17 18:09:25.218 -07 000000462 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 10, FrontChillerTemperature: 3.985358,
17-03-17 18:09:26.568 -07 000000627 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 0
17-03-17 18:09:26.568 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 9. Bubbles during last 5000 ms interval: R1=0, R2=1, Total=1. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=83, R2=91, Total=174. Warn if over 250 bubbles per interval.
17-03-17 18:09:28.078 -07 000000576 INF: WaitCommand(10000) end
17-03-17 18:09:28.078 -07 000000610 INF: =================== Cycle #10, Pumping Reagent PR2 (3) ===================
17-03-17 18:09:28.078 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 250 µL, calling command Pumping to Flow Cell #1
17-03-17 18:09:28.078 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:09:28.108 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-17 18:09:28.108 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-17 18:09:28.108 -07 000000610 INF: =================== Cycle #10, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 18:09:28.238 -07 000000610 INF: LanePump: Xmit /1V400IP1500R\r
17-03-17 18:09:28.278 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:09:30.578 -07 000000576 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 10, FrontChillerTemperature: 3.997626,
17-03-17 18:09:31.568 -07 000000433 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 0
17-03-17 18:09:31.568 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 9. Bubbles during last 5000 ms interval: R1=0, R2=1, Total=1. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=83, R2=92, Total=175. Warn if over 250 bubbles per interval.
17-03-17 18:09:34.408 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:09:34.438 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:09:34.858 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:09:34.888 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:09:35.308 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:09:35.338 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:09:35.758 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:09:35.788 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:09:35.958 -07 000000576 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 10, FrontChillerTemperature: 3.977204,
17-03-17 18:09:36.208 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:09:36.748 -07 000000480 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 3 R1 3
17-03-17 18:09:36.748 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 9. Bubbles during last 5000 ms interval: R1=3, R2=3, Total=6. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=86, R2=95, Total=181. Warn if over 250 bubbles per interval.
17-03-17 18:09:36.758 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:09:36.758 -07 000000610 INF: LanePump: Waited 8479 ms for pump motion to complete
17-03-17 18:09:36.758 -07 000000610 INF: =================== Cycle #10, Pumping Reagent PR2 (3) ===================
17-03-17 18:09:36.888 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:09:36.918 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-17 18:09:36.918 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-17 18:09:37.048 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:09:37.078 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-17 18:09:37.078 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-17 18:09:37.078 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 18:09:37.208 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 18:09:37.238 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:09:37.668 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:09:37.698 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:09:37.698 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 18:09:37.698 -07 000000610 INF: =================== Cycle #10 ===================
17-03-17 18:09:38.918 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-17 18:09:38.918 -07 000000610 INF: ReagentValve: Go to position 1 - PumpToFlowcell start
17-03-17 18:09:38.918 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 18:09:38.938 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 18:09:38.938 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 1. Moving 2 positions.
17-03-17 18:09:38.938 -07 000000610 INF: ReagentValve: Xmit -01\r
17-03-17 18:09:39.148 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 18:09:39.168 -07 000000610 INF: ReagentValve: Recv 0198\r
17-03-17 18:09:39.168 -07 000000610 INF: ReagentValve: Move- from 3 to 1 took 408 steps, expected 408. Error = 0 steps (0.0%)
17-03-17 18:09:39.218 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 18:09:39.238 -07 000000610 INF: ReagentValve: Recv 01\r
17-03-17 18:09:39.238 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 18:09:39.338 -07 000000610 INF: =================== Cycle #10, Pumping Reagent IMT (1) ===================
17-03-17 18:09:39.338 -07 000000610 INF: LanePump: Pumping from 1, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-17 18:09:39.338 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:09:39.368 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-17 18:09:39.368 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-17 18:09:39.368 -07 000000610 INF: =================== Cycle #10, Pumping Reagent IMT (1), Aspirating port InputPort ===================
17-03-17 18:09:39.498 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-17 18:09:39.538 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:09:40.978 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:09:41.008 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:09:41.428 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:09:41.458 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:09:41.458 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-17 18:09:41.458 -07 000000610 INF: =================== Cycle #10, Pumping Reagent IMT (1) ===================
17-03-17 18:09:41.568 -07 000000501 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:09:41.568 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 9. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=86, R2=95, Total=181. Warn if over 250 bubbles per interval.
17-03-17 18:09:41.588 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:09:41.618 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-17 18:09:41.618 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-17 18:09:41.748 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:09:41.778 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-17 18:09:41.778 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-17 18:09:41.778 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 18:09:41.908 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 18:09:41.938 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:09:42.078 -07 000000480 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 10, FrontChillerTemperature: 4.011254,
17-03-17 18:09:42.368 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:09:42.398 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:09:42.398 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 18:09:42.398 -07 000000610 INF: =================== Cycle #10 ===================
17-03-17 18:09:43.618 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-17 18:09:43.618 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 18:09:43.618 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 18:09:43.638 -07 000000610 INF: ReagentValve: Recv 01\r
17-03-17 18:09:43.638 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 1 to 3. Moving 2 positions.
17-03-17 18:09:43.638 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-17 18:09:43.868 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 18:09:43.888 -07 000000610 INF: ReagentValve: Recv 01AC\r
17-03-17 18:09:43.888 -07 000000610 INF: ReagentValve: Move+ from 1 to 3 took 428 steps, expected 408. Error = 20 steps (4.9%)
17-03-17 18:09:43.938 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 18:09:43.958 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 18:09:43.958 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 18:09:44.058 -07 000000610 INF: =================== Cycle #10, Pumping Reagent PR2 (3) ===================
17-03-17 18:09:44.058 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-17 18:09:44.058 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:09:44.088 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-17 18:09:44.088 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-17 18:09:44.088 -07 000000610 INF: =================== Cycle #10, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 18:09:44.218 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-17 18:09:44.258 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:09:45.128 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:09:45.158 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:09:45.158 -07 000000610 INF: LanePump: Waited 900 ms for pump motion to complete
17-03-17 18:09:45.158 -07 000000610 INF: =================== Cycle #10, Pumping Reagent PR2 (3) ===================
17-03-17 18:09:45.288 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:09:45.318 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-17 18:09:45.318 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-17 18:09:45.448 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:09:45.478 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-17 18:09:45.478 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-17 18:09:45.478 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 18:09:45.608 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 18:09:45.638 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:09:46.068 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:09:46.098 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:09:46.098 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 18:09:46.098 -07 000000610 INF: =================== Cycle #10 ===================
17-03-17 18:09:46.098 -07 000000610 INF: =================== Cycle #10, Flow Cell Temp 65° ===================
17-03-17 18:09:46.098 -07 000000610 INF: =================== Cycle #10, Flow Cell Temp 65°, FC temperature to 65° ===================
17-03-17 18:09:46.098 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 65000000\n [FlowCellTempControl]
17-03-17 18:09:46.098 -07 000000541 INF: FPGA: Recv TEC2TEMP 
17-03-17 18:09:46.108 -07 000000610 INF: FPGA: 'TEC2TEMP 0 65000000' command took 1 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:09:46.108 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-17 18:09:46.108 -07 000000486 INF: FPGA: Recv TEC2EN 
17-03-17 18:09:46.118 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:09:46.118 -07 000000610 INF: =================== Cycle #10, Flow Cell Temp 65° ===================
17-03-17 18:09:46.118 -07 000000610 INF: =================== Cycle #10 ===================
17-03-17 18:09:46.118 -07 000000610 INF: WaitCommand(30000) start
17-03-17 18:09:46.568 -07 000000480 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:09:46.568 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 9. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=86, R2=95, Total=181. Warn if over 250 bubbles per interval.
17-03-17 18:09:47.438 -07 000000480 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 10, FrontChillerTemperature: 3.993549,
17-03-17 18:09:51.568 -07 000000501 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:09:51.568 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 9. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=86, R2=95, Total=181. Warn if over 250 bubbles per interval.
17-03-17 18:09:52.808 -07 000000431 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 10, FrontChillerTemperature: 3.98264,
17-03-17 18:09:56.568 -07 000000431 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:09:56.568 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 9. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=86, R2=95, Total=181. Warn if over 250 bubbles per interval.
17-03-17 18:09:58.178 -07 000000480 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 10, FrontChillerTemperature: 3.989471,
17-03-17 18:10:01.568 -07 000000501 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:10:01.568 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 9. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=86, R2=95, Total=181. Warn if over 250 bubbles per interval.
17-03-17 18:10:03.548 -07 000000501 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 10, FrontChillerTemperature: 3.996267,
17-03-17 18:10:06.568 -07 000000593 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:10:06.568 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 9. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=86, R2=95, Total=181. Warn if over 250 bubbles per interval.
17-03-17 18:10:08.918 -07 000000593 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 10, FrontChillerTemperature: 3.996267,
17-03-17 18:10:11.568 -07 000000501 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:10:11.568 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 9. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=86, R2=95, Total=181. Warn if over 250 bubbles per interval.
17-03-17 18:10:14.298 -07 000000433 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 10, FrontChillerTemperature: 4.028963,
17-03-17 18:10:16.128 -07 000000610 INF: WaitCommand(30000) end
17-03-17 18:10:16.128 -07 000000610 INF: =================== Cycle #10, Pumping Reagent PR2 (3) ===================
17-03-17 18:10:16.128 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 5 µL, calling command Pumping to Flow Cell #1
17-03-17 18:10:16.228 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:10:16.258 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-17 18:10:16.258 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-17 18:10:16.258 -07 000000610 INF: =================== Cycle #10, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 18:10:16.388 -07 000000610 INF: LanePump: Xmit /1V400IP30R\r
17-03-17 18:10:16.428 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:10:16.568 -07 000000501 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:10:16.568 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 9. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=86, R2=95, Total=181. Warn if over 250 bubbles per interval.
17-03-17 18:10:16.968 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:10:16.998 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:10:16.998 -07 000000610 INF: LanePump: Waited 569 ms for pump motion to complete
17-03-17 18:10:16.998 -07 000000610 INF: =================== Cycle #10, Pumping Reagent PR2 (3) ===================
17-03-17 18:10:17.128 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:10:17.158 -07 000000610 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-17 18:10:17.158 -07 000000610 INF: LanePump: Current Position of Pump is: 1920
17-03-17 18:10:17.288 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:10:17.318 -07 000000610 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-17 18:10:17.318 -07 000000610 INF: LanePump: Current Position of Pump is: 1920
17-03-17 18:10:17.318 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 18:10:17.448 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 18:10:17.478 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:10:17.908 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:10:17.938 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:10:17.938 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 18:10:17.938 -07 000000610 INF: =================== Cycle #10 ===================
17-03-17 18:10:17.938 -07 000000593 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 18:10:17.938 -07 000000433 INF: WaitCommand(30000) start
17-03-17 18:10:17.938 -07 000000593 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-17 18:10:19.158 -07 000000593 INF: AsyncDelayTimer waited 1215ms
17-03-17 18:10:19.158 -07 000000593 INF: LanePump: Xmit /1?\r
17-03-17 18:10:19.188 -07 000000593 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-17 18:10:19.188 -07 000000593 INF: LanePump: Current Position of Pump is: 1920
17-03-17 18:10:19.318 -07 000000593 INF: LanePump: Xmit /1V1500OA0R\r
17-03-17 18:10:19.358 -07 000000593 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:10:19.668 -07 000000501 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 10, FrontChillerTemperature: 4.014009,
17-03-17 18:10:21.568 -07 000000459 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:10:21.568 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 9. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=86, R2=95, Total=181. Warn if over 250 bubbles per interval.
17-03-17 18:10:21.698 -07 000000593 INF: LanePump: Xmit /1Q\r
17-03-17 18:10:21.728 -07 000000593 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:10:22.148 -07 000000593 INF: LanePump: Xmit /1Q\r
17-03-17 18:10:22.178 -07 000000593 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:10:22.178 -07 000000593 INF: LanePump: Waited 2820 ms for pump motion to complete
17-03-17 18:10:22.178 -07 000000593 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 18:10:22.178 -07 000000593 INF: ===================  ===================
17-03-17 18:10:25.028 -07 000000608 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 10, FrontChillerTemperature: 4.005817,
17-03-17 18:10:26.568 -07 000000382 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:10:26.568 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 9. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=86, R2=95, Total=181. Warn if over 250 bubbles per interval.
17-03-17 18:10:31.088 -07 000000459 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 10, FrontChillerTemperature: 4.016692,
17-03-17 18:10:31.568 -07 000000608 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:10:31.568 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 9. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=86, R2=95, Total=181. Warn if over 250 bubbles per interval.
17-03-17 18:10:36.448 -07 000000459 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 10, FrontChillerTemperature: 4.004458,
17-03-17 18:10:36.568 -07 000000608 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:10:36.568 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 9. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=86, R2=95, Total=181. Warn if over 250 bubbles per interval.
17-03-17 18:10:41.568 -07 000000480 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:10:41.568 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 9. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=86, R2=95, Total=181. Warn if over 250 bubbles per interval.
17-03-17 18:10:41.828 -07 000000608 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 10, FrontChillerTemperature: 4.009895,
17-03-17 18:10:46.568 -07 000000608 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:10:46.568 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 9. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=86, R2=95, Total=181. Warn if over 250 bubbles per interval.
17-03-17 18:10:47.188 -07 000000480 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 10, FrontChillerTemperature: 4.001704,
17-03-17 18:10:47.948 -07 000000433 INF: WaitCommand(30000) end
17-03-17 18:10:47.948 -07 000000610 INF: =================== Cycle #10, Flow Cell Temp 22° ===================
17-03-17 18:10:47.948 -07 000000610 INF: =================== Cycle #10, Flow Cell Temp 22°, FC temperature to 22° ===================
17-03-17 18:10:47.948 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 22000000\n [FlowCellTempControl]
17-03-17 18:10:47.958 -07 000000501 INF: FPGA: Recv TEC2TEMP 
17-03-17 18:10:47.968 -07 000000610 INF: FPGA: 'TEC2TEMP 0 22000000' command took 1 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:10:47.968 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-17 18:10:47.968 -07 000000608 INF: FPGA: Recv TEC2EN 
17-03-17 18:10:47.978 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:10:47.978 -07 000000610 INF: =================== Cycle #10, Flow Cell Temp 22° ===================
17-03-17 18:10:47.978 -07 000000610 INF: =================== Cycle #10 ===================
17-03-17 18:10:47.978 -07 000000610 INF: =================== Cycle #10, Pumping Reagent PR2 (3) ===================
17-03-17 18:10:47.978 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1
17-03-17 18:10:47.978 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:10:48.018 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-17 18:10:48.018 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-17 18:10:48.018 -07 000000610 INF: =================== Cycle #10, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 18:10:48.148 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r
17-03-17 18:10:48.188 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:10:51.318 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:10:51.348 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:10:51.568 -07 000000608 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 2
17-03-17 18:10:51.568 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 9. Bubbles during last 5000 ms interval: R1=2, R2=0, Total=2. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=88, R2=95, Total=183. Warn if over 250 bubbles per interval.
17-03-17 18:10:51.768 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:10:51.798 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:10:52.218 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:10:52.248 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:10:52.248 -07 000000610 INF: LanePump: Waited 4059 ms for pump motion to complete
17-03-17 18:10:52.248 -07 000000610 INF: =================== Cycle #10, Pumping Reagent PR2 (3) ===================
17-03-17 18:10:52.378 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:10:52.408 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 18:10:52.408 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 18:10:52.538 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:10:52.558 -07 000000608 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 10, FrontChillerTemperature: 4.001704,
17-03-17 18:10:52.568 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 18:10:52.568 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 18:10:52.568 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 18:10:52.698 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 18:10:53.448 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:10:53.878 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:10:53.908 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:10:53.908 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 18:10:53.908 -07 000000610 INF: =================== Cycle #10 ===================
17-03-17 18:10:54.408 -07 000000610 INF: AsyncDelayTimer waited 499ms
17-03-17 18:10:54.408 -07 000000610 INF: ReagentValve: Go to position 2 - PumpToFlowcell start
17-03-17 18:10:54.408 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 18:10:54.428 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 18:10:54.428 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 2. Moving 1 positions.
17-03-17 18:10:54.428 -07 000000610 INF: ReagentValve: Xmit -02\r
17-03-17 18:10:54.578 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 18:10:54.598 -07 000000610 INF: ReagentValve: Recv 00E3\r
17-03-17 18:10:54.598 -07 000000610 INF: ReagentValve: Move- from 3 to 2 took 227 steps, expected 204. Error = 23 steps (11.3%)
17-03-17 18:10:54.648 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 18:10:54.668 -07 000000610 INF: ReagentValve: Recv 02\r
17-03-17 18:10:54.668 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 18:10:54.768 -07 000000610 INF: =================== Cycle #10, Pumping Reagent USM (2) ===================
17-03-17 18:10:54.768 -07 000000610 INF: LanePump: Pumping from 2, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-17 18:10:54.768 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:10:54.798 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 18:10:54.798 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 18:10:54.798 -07 000000610 INF: =================== Cycle #10, Pumping Reagent USM (2), Aspirating port InputPort ===================
17-03-17 18:10:54.928 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-17 18:10:54.968 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:10:56.408 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:10:56.438 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:10:56.568 -07 000000593 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 2 R1 0
17-03-17 18:10:56.568 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 9. Bubbles during last 5000 ms interval: R1=0, R2=2, Total=2. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=88, R2=97, Total=185. Warn if over 250 bubbles per interval.
17-03-17 18:10:56.858 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:10:56.888 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:10:56.888 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-17 18:10:56.888 -07 000000610 INF: =================== Cycle #10, Pumping Reagent USM (2) ===================
17-03-17 18:10:57.018 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:10:57.048 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 18:10:57.048 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 18:10:57.178 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:10:57.208 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 18:10:57.208 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 18:10:57.208 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 18:10:57.338 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 18:10:57.368 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:10:57.798 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:10:57.828 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:10:57.828 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 18:10:57.828 -07 000000610 INF: =================== Cycle #10 ===================
17-03-17 18:10:58.778 -07 000000459 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 10, FrontChillerTemperature: 3.997626,
17-03-17 18:10:59.048 -07 000000610 INF: AsyncDelayTimer waited 1218ms
17-03-17 18:10:59.048 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 18:10:59.048 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 18:10:59.068 -07 000000610 INF: ReagentValve: Recv 02\r
17-03-17 18:10:59.068 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 2 to 3. Moving 1 positions.
17-03-17 18:10:59.068 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-17 18:10:59.218 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 18:10:59.238 -07 000000610 INF: ReagentValve: Recv 00E3\r
17-03-17 18:10:59.238 -07 000000610 INF: ReagentValve: Move+ from 2 to 3 took 227 steps, expected 204. Error = 23 steps (11.3%)
17-03-17 18:10:59.288 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 18:10:59.308 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 18:10:59.308 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 18:10:59.408 -07 000000610 INF: =================== Cycle #10, Pumping Reagent PR2 (3) ===================
17-03-17 18:10:59.408 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-17 18:10:59.408 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:10:59.438 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 18:10:59.438 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 18:10:59.438 -07 000000610 INF: =================== Cycle #10, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 18:10:59.568 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-17 18:10:59.608 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:11:00.478 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:11:00.508 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:11:00.508 -07 000000610 INF: LanePump: Waited 900 ms for pump motion to complete
17-03-17 18:11:00.508 -07 000000610 INF: =================== Cycle #10, Pumping Reagent PR2 (3) ===================
17-03-17 18:11:00.638 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:11:00.668 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 18:11:00.668 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 18:11:00.798 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:11:00.828 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 18:11:00.828 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 18:11:00.828 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 18:11:00.958 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 18:11:00.988 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:11:01.418 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:11:01.448 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:11:01.448 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 18:11:01.448 -07 000000610 INF: =================== Cycle #10 ===================
17-03-17 18:11:01.448 -07 000000459 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 18:11:01.448 -07 000000593 INF: WaitCommand(10000) start
17-03-17 18:11:01.448 -07 000000459 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-17 18:11:01.568 -07 000000551 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 1
17-03-17 18:11:01.568 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 9. Bubbles during last 5000 ms interval: R1=1, R2=0, Total=1. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=89, R2=97, Total=186. Warn if over 250 bubbles per interval.
17-03-17 18:11:02.668 -07 000000459 INF: AsyncDelayTimer waited 1213ms
17-03-17 18:11:02.668 -07 000000459 INF: LanePump: Xmit /1?\r
17-03-17 18:11:02.698 -07 000000459 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 18:11:02.698 -07 000000459 INF: LanePump: Current Position of Pump is: 1110
17-03-17 18:11:02.828 -07 000000459 INF: LanePump: Xmit /1V1500OA0R\r
17-03-17 18:11:02.868 -07 000000459 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:11:04.398 -07 000000459 INF: LanePump: Xmit /1Q\r
17-03-17 18:11:04.658 -07 000000551 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 10, FrontChillerTemperature: 3.98264,
17-03-17 18:11:04.668 -07 000000459 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:11:05.088 -07 000000459 INF: LanePump: Xmit /1Q\r
17-03-17 18:11:05.118 -07 000000459 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:11:05.118 -07 000000459 INF: LanePump: Waited 2249 ms for pump motion to complete
17-03-17 18:11:05.118 -07 000000459 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 18:11:05.118 -07 000000459 INF: ===================  ===================
17-03-17 18:11:06.568 -07 000000551 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 1
17-03-17 18:11:06.568 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 9. Bubbles during last 5000 ms interval: R1=1, R2=0, Total=1. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=90, R2=97, Total=187. Warn if over 250 bubbles per interval.
17-03-17 18:11:10.018 -07 000000627 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 10, FrontChillerTemperature: 4.019446,
17-03-17 18:11:11.458 -07 000000593 INF: WaitCommand(10000) end
17-03-17 18:11:11.458 -07 000000610 INF: =================== Cycle #10, Imaging ===================
17-03-17 18:11:11.458 -07 000000610 INF: Imaging Cycle 10: ScanTilesCommand Cycle 10 time start.
17-03-17 18:11:11.458 -07 000000610 INF: ReagentValve: Go to position 24 (Plug) - Start of ScanTilesCommand
17-03-17 18:11:11.458 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 18:11:11.488 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 18:11:11.488 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 24. Moving 3 positions.
17-03-17 18:11:11.488 -07 000000610 INF: ReagentValve: Xmit -18\r
17-03-17 18:11:11.568 -07 000000551 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 0
17-03-17 18:11:11.568 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 9. Bubbles during last 5000 ms interval: R1=0, R2=1, Total=1. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=90, R2=98, Total=188. Warn if over 250 bubbles per interval.
17-03-17 18:11:11.788 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 18:11:11.808 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-17 18:11:11.808 -07 000000610 INF: ReagentValve: Move- from 3 to 24 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-17 18:11:11.858 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 18:11:11.878 -07 000000610 INF: ReagentValve: Recv 18\r
17-03-17 18:11:11.878 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:11:11.878 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:11:11.878 -07 000000459 INF: RedLED: Snapping RedLED at power = 1930.000 mW, snap mode for ~0 ms start.
17-03-17 18:11:11.878 -07 000000459 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:11:11.878 -07 000000459 INF: FPGA: Xmit EXLED1ON\n [RedLED]
17-03-17 18:11:11.888 -07 000000551 INF: FPGA: Recv EXLED1ON 
17-03-17 18:11:11.888 -07 000000459 INF: FPGA: 'EXLED1ON' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 18:11:11.888 -07 000000459 INF: FPGA: Xmit EXLED1ADCR\n [RedLED]
17-03-17 18:11:11.888 -07 000000608 INF: FPGA: Recv EXLED1ADCR 23175
17-03-17 18:11:11.898 -07 000000459 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:11:11.898 -07 000000459 INF: RedLED: Using Red data: Photodiode ADC 23175 --> 7.4 mW (old method), or 205.4 mW (new method). Difference = 198.0 mW
17-03-17 18:11:11.898 -07 000000459 INF: FPGA: Xmit EXLED1OFF\n [RedLED]
17-03-17 18:11:11.898 -07 000000551 INF: FPGA: Recv EXLED1OFF 
17-03-17 18:11:11.908 -07 000000459 INF: FPGA: 'EXLED1OFF' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:11:11.908 -07 000000459 INF: RedLED: LED was on for 18 ms
17-03-17 18:11:11.918 -07 000000459 INF: RedLED: Snapping RedLED at power = 1930.000 mW, snap mode for ~0 ms end. Duration was 35 ms.
17-03-17 18:11:11.918 -07 000000459 INF: GreenLED: Snapping GreenLED at power = 5964.000 mW, snap mode for ~0 ms start.
17-03-17 18:11:11.918 -07 000000459 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:11:11.918 -07 000000459 INF: FPGA: Xmit EXLED2ON\n [GreenLED]
17-03-17 18:11:11.928 -07 000000608 INF: FPGA: Recv EXLED2ON 
17-03-17 18:11:11.928 -07 000000459 INF: FPGA: 'EXLED2ON' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 18:11:11.928 -07 000000459 INF: FPGA: Xmit EXLED1ADCR\n [GreenLED]
17-03-17 18:11:11.928 -07 000000433 INF: FPGA: Recv EXLED1ADCR 2110
17-03-17 18:11:11.938 -07 000000459 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:11:11.938 -07 000000459 INF: GreenLED: Using Green data: Photodiode ADC 2110 --> 0.9 mW (old method), or 183.3 mW (new method). Difference = 182.3 mW
17-03-17 18:11:11.938 -07 000000459 INF: FPGA: Xmit EXLED2OFF\n [GreenLED]
17-03-17 18:11:11.938 -07 000000593 INF: FPGA: Recv EXLED2OFF 
17-03-17 18:11:11.948 -07 000000459 INF: FPGA: 'EXLED2OFF' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:11:11.948 -07 000000459 INF: GreenLED: LED was on for 19 ms
17-03-17 18:11:11.948 -07 000000459 INF: GreenLED: Snapping GreenLED at power = 5964.000 mW, snap mode for ~0 ms end. Duration was 27 ms.
17-03-17 18:11:11.948 -07 000000610 INF: FPGA: Xmit EMCUR 80\n [Compensator]
17-03-17 18:11:11.958 -07 000000627 INF: FPGA: Recv EMCUR 
17-03-17 18:11:11.958 -07 000000610 INF: FPGA: 'EMCUR 80' command took 0 ms to send, 2 ms to get response, and 4 ms overall
17-03-17 18:11:11.958 -07 000000610 INF: FPGA: Xmit EMOUT 20 70\n [Compensator]
17-03-17 18:11:12.458 -07 000000433 INF: FPGA: Recv EMOUT
17-03-17 18:11:12.458 -07 000000610 INF: FPGA: 'EMOUT 20 70' command took 0 ms to send, 495 ms to get response, and 502 ms overall
17-03-17 18:11:12.458 -07 000000610 INF: FPGA: Xmit EMCUR 75\n [Compensator]
17-03-17 18:11:12.458 -07 000000459 INF: FPGA: Recv EMCUR 
17-03-17 18:11:12.468 -07 000000610 INF: FPGA: 'EMCUR 75' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:11:12.468 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 18:11:12.468 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 1 at Y-position 75.38427734375, Z-Position -0.127152289517827. ------
17-03-17 18:11:12.468 -07 000000608 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:11:12.468 -07 000000593 INF: Y Motor: MoveYZ optimized starting. Moving Y to 59.9126 mm, moving Z to -0.17924 mm
17-03-17 18:11:12.468 -07 000000593 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:11:12.468 -07 000000459 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True)
17-03-17 18:11:12.468 -07 000000459 INF: Y Motor: Moving to 59.9126 mm, started at 75.3843 mm, delta = -15.4717 mm
17-03-17 18:11:12.468 -07 000000627 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:11:12.468 -07 000000433 INF: Z Motor: Entering MoveAbsStepped (DAC = 39155, sync = True, waitForSettling = False)
17-03-17 18:11:12.478 -07 000000608 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 18:11:12.478 -07 000000433 INF: Z Motor: Moving to -0.179240 mm, started at -0.127152 mm, distance = -52.09 um
17-03-17 18:11:12.478 -07 000000433 INF: FPGA: Xmit ZDACW 39155\n [Z Motor]
17-03-17 18:11:12.478 -07 000000480 INF: FPGA: Recv ZDACW
17-03-17 18:11:12.488 -07 000000433 INF: FPGA: 'ZDACW 39155' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:11:12.488 -07 000000608 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:11:12.498 -07 000000459 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:11:12.498 -07 000000480 INF: FPGA: Recv YRDPOS 154387
17-03-17 18:11:12.508 -07 000000459 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-17 18:11:12.508 -07 000000459 INF: Y Motor: Encoder = 154387 = motor step 120614.8 = 75.3843 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:11:12.508 -07 000000459 INF: Y Motor: Last commanded position = 75.3806 mm (120608.9 steps), delta from last commanded position = -15.4680 mm (-24748.8 steps). UsingTableMove = False
17-03-17 18:11:12.508 -07 000000459 INF: Y Motor: Moving to 122701 encoder counts
17-03-17 18:11:12.508 -07 000000433 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:11:12.508 -07 000000551 INF: FPGA: Recv ZDACR 39155
17-03-17 18:11:12.518 -07 000000433 INF: FPGA: 'ZDACR' command took 1 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:11:12.518 -07 000000433 INF: Z Motor: MoveAbsStepped took 40 ms (did NOT wait for settling yet))
17-03-17 18:11:12.518 -07 000000459 INF: FPGA: Xmit YMVTO 122701\n [Y Motor]
17-03-17 18:11:12.688 -07 000000433 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:11:12.688 -07 000000608 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 212 ms overall
17-03-17 18:11:14.198 -07 000000551 INF: FPGA: Recv YMVTO 122702 24781
17-03-17 18:11:14.198 -07 000000459 INF: FPGA: 'YMVTO 122701' command took 0 ms to send, 1676 ms to get response, and 1695 ms overall
17-03-17 18:11:14.198 -07 000000459 INF: Y Motor: Position error before settling = 1 encoder counts (0.000 mm)
17-03-17 18:11:14.198 -07 000000459 INF: Y Motor: To move from 75.384 to 59.913 (-15.472 mm) should take 24755 steps, but required 24781 steps (15.488 mm). Slippage = 0.016 mm (0.00%).
17-03-17 18:11:14.198 -07 000000459 INF: Y Motor: FPGA move command 'YMVTO 122701' took 1695 ms, distance = 15.472 mm, average velocity = 9.128 mm/sec
17-03-17 18:11:15.388 -07 000000433 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 10, FrontChillerTemperature: 3.999021,
17-03-17 18:11:16.568 -07 000000480 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 0
17-03-17 18:11:16.568 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 9. Bubbles during last 5000 ms interval: R1=0, R2=1, Total=1. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=90, R2=99, Total=189. Warn if over 250 bubbles per interval.
17-03-17 18:11:17.048 -07 000000459 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:11:17.048 -07 000000433 INF: FPGA: Recv YRDPOS 122699
17-03-17 18:11:17.058 -07 000000459 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:11:17.058 -07 000000459 INF: Y Motor: Encoder = 122699 = motor step 95858.6 = 59.9116 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:11:17.078 -07 000000459 INF: Y Motor: After move to 59.912609, error = -0.000988, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:11:17.078 -07 000000459 INF: Y Motor: Position error after settling = -2 encoder counts (-0.001 mm), Delta during settling = -3 counts (-0.001 mm)
17-03-17 18:11:17.078 -07 000000459 INF: Y Motor: Moved to 59.9116 after 4601 ms
17-03-17 18:11:17.078 -07 000000593 INF: Z Motor: EndOfMoveAbsStepped: target = -0.179240 mm (DAC = 39155)
17-03-17 18:11:17.078 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:11:17.078 -07 000000608 INF: FPGA: Recv ZSGSRD 37195
17-03-17 18:11:17.088 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:11:17.088 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:11:17.088 -07 000000433 INF: FPGA: Recv ZSGSRD 37187
17-03-17 18:11:17.098 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:11:17.098 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:11:17.098 -07 000000627 INF: FPGA: Recv ZSGSRD 37194
17-03-17 18:11:17.108 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:11:17.108 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:11:17.108 -07 000000501 INF: FPGA: Recv ZSGSRD 37191
17-03-17 18:11:17.118 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:11:17.118 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:11:17.118 -07 000000608 INF: FPGA: Recv ZSGSRD 37189
17-03-17 18:11:17.128 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:11:17.128 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:11:17.128 -07 000000433 INF: FPGA: Recv ZSGSRD 37192
17-03-17 18:11:17.138 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:11:17.138 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:11:17.138 -07 000000480 INF: FPGA: Recv ZSGSRD 37190
17-03-17 18:11:17.148 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:11:17.148 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:11:17.148 -07 000000433 INF: FPGA: Recv ZSGSRD 37195
17-03-17 18:11:17.158 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:11:17.158 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:11:17.158 -07 000000459 INF: FPGA: Recv ZSGSRD 37188
17-03-17 18:11:17.168 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:11:17.168 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:11:17.168 -07 000000433 INF: FPGA: Recv ZSGSRD 37185
17-03-17 18:11:17.178 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:11:17.178 -07 000000593 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:11:17.178 -07 000000459 INF: FPGA: Recv ZPIEZORD 33519
17-03-17 18:11:17.188 -07 000000593 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:11:17.188 -07 000000593 INF: Z Motor: Piezo is near 51.6 V (nominally 0 to 100 V), expect near 59.7 V, since DAC is at 5.975 V. Piezo Error = -8.1 V.
17-03-17 18:11:17.188 -07 000000593 INF: Z Motor: ReadAdcAverage: Commanded Z = -179.2 um, Read 10 ADC samples: Avg = 37191 (-178.3 uncal um), Error = 0.9 uncal um, Median = 37190 (-178.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 37185 (-178.3 uncal um), Max = 37195 (-178.4 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 18:11:17.188 -07 000000593 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37191, posNoise = 4, negNoise = 6
17-03-17 18:11:17.188 -07 000000593 INF: Z Motor: After move to -0.179240, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:11:17.188 -07 000000593 INF: Z Motor: Settle wait time = 4605 ms, measure time = 105 ms (allowed 150 ms), total time = 4710 ms
17-03-17 18:11:17.188 -07 000000593 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 18:11:17.238 -07 000000593 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 4763 ms
17-03-17 18:11:17.238 -07 000000593 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:11:17.238 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:11:17.238 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:11:17.238 -07 000000551 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:11:17.238 -07 000000459 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:11:17.238 -07 000000627 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:11:17.238 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:11:17.248 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:11:17.248 -07 000000627 INF: Camera: sBCa_SetPowerMode(785074288, 1) start.
17-03-17 18:11:17.268 -07 000000627 INF: Camera: sBCa_SetPowerMode(785074288, 1) end. Duration was 23 ms.
17-03-17 18:11:17.268 -07 000000627 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:11:17.268 -07 000000627 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms.
17-03-17 18:11:17.268 -07 000000627 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:11:17.288 -07 000000627 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 18:11:17.288 -07 000000627 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 41 ms.
17-03-17 18:11:17.288 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:11:17.328 -07 000000551 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:11:17.528 -07 000000627 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:11:17.528 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:11:17.528 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:11:17.538 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2468220576, 0x0, 559484976) start.
17-03-17 18:11:17.568 -07 000000382 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:11:17.568 -07 000000433 INF: FPGA: Recv CAMSNAP
17-03-17 18:11:17.568 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 278 ms to get response, and 285 ms overall
17-03-17 18:11:17.658 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2468220576, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 18:11:17.658 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:11:17.658 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 18:11:17.658 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms.
17-03-17 18:11:17.768 -07 000000433 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:11:17.768 -07 000000627 INF: Image SNR check: start
17-03-17 18:11:17.768 -07 000000382 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:11:17.778 -07 000000433 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:11:17.778 -07 000000433 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:11:17.788 -07 000000627 INF: Image SNR check: pass  [peak (Max-Min)=66.97]
17-03-17 18:11:17.788 -07 000000627 INF: Autofocus start
17-03-17 18:11:17.788 -07 000000627 INF: MeasureProfile start
17-03-17 18:11:17.798 -07 000000627 INF: MeasureProfile done
17-03-17 18:11:17.798 -07 000000627 INF: X=16  Z correction [um]=0.01042744
17-03-17 18:11:17.798 -07 000000627 INF: Autofocus finished
17-03-17 18:11:17.978 -07 000000382 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:11:17.978 -07 000000433 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:11:17.988 -07 000000610 INF: ------------ Scan Snapping tile 1 at Y-position 59.91162109375, Z-position -0.179246225775367. ----------
17-03-17 18:11:17.988 -07 000000610 INF: Cycle	10	Tile	1	Exposure Settings		A	392	G	188	T	188	C	392
17-03-17 18:11:17.988 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37670, sync = True, waitForSettling = True)
17-03-17 18:11:17.988 -07 000000610 INF: Z Motor: Moving to -0.172442 mm, started at -0.179246 mm, distance = 6.80 um
17-03-17 18:11:17.988 -07 000000610 INF: FPGA: Xmit ZDACW 37670\n [Z Motor]
17-03-17 18:11:17.988 -07 000000459 INF: FPGA: Recv ZDACW
17-03-17 18:11:17.998 -07 000000610 INF: FPGA: 'ZDACW 37670' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:11:17.998 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:11:17.998 -07 000000551 INF: FPGA: Recv ZDACR 37670
17-03-17 18:11:18.008 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:11:18.008 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:11:18.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:11:18.158 -07 000000627 INF: FPGA: Recv ZSGSRD 36132
17-03-17 18:11:18.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:11:18.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:11:18.168 -07 000000627 INF: FPGA: Recv ZSGSRD 36131
17-03-17 18:11:18.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:11:18.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:11:18.178 -07 000000382 INF: FPGA: Recv ZSGSRD 36135
17-03-17 18:11:18.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:11:18.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:11:18.188 -07 000000551 INF: FPGA: Recv ZSGSRD 36131
17-03-17 18:11:18.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:11:18.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:11:18.198 -07 000000382 INF: FPGA: Recv ZSGSRD 36136
17-03-17 18:11:18.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:11:18.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:11:18.208 -07 000000382 INF: FPGA: Recv ZSGSRD 36135
17-03-17 18:11:18.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:11:18.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:11:18.218 -07 000000382 INF: FPGA: Recv ZSGSRD 36132
17-03-17 18:11:18.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:11:18.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:11:18.228 -07 000000551 INF: FPGA: Recv ZSGSRD 36136
17-03-17 18:11:18.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:11:18.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:11:18.238 -07 000000459 INF: FPGA: Recv ZSGSRD 36135
17-03-17 18:11:18.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:11:18.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:11:18.248 -07 000000459 INF: FPGA: Recv ZSGSRD 36133
17-03-17 18:11:18.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:11:18.258 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:11:18.258 -07 000000433 INF: FPGA: Recv ZPIEZORD 32095
17-03-17 18:11:18.268 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:11:18.268 -07 000000610 INF: Z Motor: Piezo is near 48.6 V (nominally 0 to 100 V), expect near 57.5 V, since DAC is at 5.748 V. Piezo Error = -8.9 V.
17-03-17 18:11:18.268 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.4 um, Read 10 ADC samples: Avg = 36134 (-171.6 uncal um), Error = 0.9 uncal um, Median = 36134 (-171.6 uncal um), StdDev = 2 (0.0 uncal um), Range = 5 (0.0 uncal um), Min = 36131 (-171.6 uncal um), Max = 36136 (-171.6 uncal um), Pos Noise = 2 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 18:11:18.268 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36134, posNoise = 2, negNoise = 3
17-03-17 18:11:18.268 -07 000000610 INF: Z Motor: After move to -0.172442, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:11:18.268 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 18:11:18.268 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:11:18.268 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:11:18.268 -07 000000433 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:11:18.268 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:11:18.268 -07 000000551 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:11:18.268 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:11:18.268 -07 000000459 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:11:18.268 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:11:18.268 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 18:11:18.268 -07 000000551 INF: Camera: sBCa_SetPowerMode(785074704, 1) start.
17-03-17 18:11:18.268 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:11:18.278 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:11:18.278 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 18:11:18.278 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:11:18.288 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 18:11:18.288 -07 000000459 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 18:11:18.288 -07 000000551 INF: Camera: sBCa_SetPowerMode(785074704, 1) end. Duration was 20 ms.
17-03-17 18:11:18.288 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:11:18.298 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 18:11:18.298 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:11:18.308 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 18:11:18.308 -07 000000551 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 33 ms.
17-03-17 18:11:18.308 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 392 392 188 188 37846 150\n [Camera]
17-03-17 18:11:18.508 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:11:18.898 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 584
17-03-17 18:11:18.898 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 584
17-03-17 18:11:18.898 -07 000000433 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:11:18.898 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 584
17-03-17 18:11:18.898 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 584
17-03-17 18:11:18.898 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:11:19.028 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:11:19.028 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) start.
17-03-17 18:11:19.028 -07 000000433 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:11:19.028 -07 000000433 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) start.
17-03-17 18:11:19.088 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37846 777
17-03-17 18:11:19.238 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP turning grn on 927
17-03-17 18:11:19.408 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) end. Duration was 381 ms.
17-03-17 18:11:19.408 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-17 18:11:19.408 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:11:19.408 -07 000000433 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) end. Duration was 383 ms.
17-03-17 18:11:19.408 -07 000000433 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 18:11:19.408 -07 000000433 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:11:19.408 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:11:19.418 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:11:19.418 -07 000000433 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 515 ms.
17-03-17 18:11:19.418 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 517 ms.
17-03-17 18:11:19.428 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1115
17-03-17 18:11:19.428 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1115
17-03-17 18:11:19.428 -07 000000433 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:11:19.428 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1115
17-03-17 18:11:19.428 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1115
17-03-17 18:11:19.428 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:11:19.438 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:11:19.438 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 18:11:19.438 -07 000000433 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:11:19.438 -07 000000433 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-17 18:11:19.618 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP 1308
17-03-17 18:11:19.618 -07 000000551 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:11:19.618 -07 000000610 INF: FPGA: 'CAMDBLSNAP 392 392 188 188 37846 150' command took 2 ms to send, 1307 ms to get response, and 1315 ms overall
17-03-17 18:11:19.618 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 18:11:19.628 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 2 at Y-position 59.91162109375, Z-Position -0.172455833541525. ------
17-03-17 18:11:19.628 -07 000000551 INF: Y Motor: MoveYZ optimized starting. Moving Y to 60.7426 mm, moving Z to -0.17878 mm
17-03-17 18:11:19.628 -07 000000551 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:11:19.628 -07 000000382 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:11:19.628 -07 000000593 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:11:19.628 -07 000000415 INF: Y Motor: Entering MoveAbsStepped (target = 97188 steps, sync = True, waitForSettling = True)
17-03-17 18:11:19.628 -07 000000415 INF: Y Motor: Moving to 60.7426 mm, started at 59.9116 mm, delta = 0.8310 mm
17-03-17 18:11:19.638 -07 000000382 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:11:19.638 -07 000000415 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:11:19.638 -07 000000486 INF: Z Motor: Entering MoveAbsStepped (DAC = 39055, sync = True, waitForSettling = False)
17-03-17 18:11:19.638 -07 000000486 INF: Z Motor: Moving to -0.178782 mm, started at -0.172456 mm, distance = -6.33 um
17-03-17 18:11:19.638 -07 000000627 INF: FPGA: Recv YRDPOS 122699
17-03-17 18:11:19.648 -07 000000415 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 18:11:19.648 -07 000000415 INF: Y Motor: Encoder = 122699 = motor step 95858.6 = 59.9116 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:11:19.648 -07 000000382 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:11:19.648 -07 000000415 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:11:19.648 -07 000000415 INF: Y Motor: Moving 1330 steps1
17-03-17 18:11:19.658 -07 000000486 INF: FPGA: Xmit ZDACW 39055\n [Z Motor]
17-03-17 18:11:19.658 -07 000000627 INF: FPGA: Recv ZDACW
17-03-17 18:11:19.668 -07 000000415 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:11:19.668 -07 000000486 INF: FPGA: 'ZDACW 39055' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-17 18:11:19.678 -07 000000486 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:11:19.678 -07 000000501 INF: FPGA: Recv ZDACR 39055
17-03-17 18:11:19.688 -07 000000486 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 18:11:19.688 -07 000000486 INF: Z Motor: MoveAbsStepped took 49 ms (did NOT wait for settling yet))
17-03-17 18:11:19.808 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 374 ms.
17-03-17 18:11:19.808 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-17 18:11:19.808 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:11:19.818 -07 000000433 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 376 ms.
17-03-17 18:11:19.818 -07 000000433 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-17 18:11:19.818 -07 000000433 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:11:19.818 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:11:19.818 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:11:19.818 -07 000000433 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 18:11:19.818 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 18:11:19.848 -07 000000618 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:11:19.848 -07 000000382 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 212 ms overall
17-03-17 18:11:20.038 -07 000000382 INF: FPGA: Recv YMVTILE
17-03-17 18:11:20.038 -07 000000415 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 18:11:20.068 -07 000000415 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:11:20.068 -07 000000502 INF: FPGA: Recv YRDPOS 124382
17-03-17 18:11:20.078 -07 000000415 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 18:11:20.078 -07 000000415 INF: Y Motor: Encoder = 124382 = motor step 97173.4 = 60.7334 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:11:20.078 -07 000000415 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm)
17-03-17 18:11:20.078 -07 000000415 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.831 mm, average velocity = 2.093 mm/sec
17-03-17 18:11:20.758 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 10, FrontChillerTemperature: 4.03576,
17-03-17 18:11:21.028 -07 000000415 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:11:21.028 -07 000000593 INF: FPGA: Recv YRDPOS 124383
17-03-17 18:11:21.038 -07 000000415 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:11:21.038 -07 000000415 INF: Y Motor: Encoder = 124383 = motor step 97174.2 = 60.7339 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:11:21.048 -07 000000415 INF: Y Motor: After move to 60.742607, error = -0.008720, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:11:21.048 -07 000000415 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 18:11:21.048 -07 000000415 INF: Y Motor: Moved to 60.7339 after 1421 ms (table move)
17-03-17 18:11:21.058 -07 000000551 INF: Z Motor: EndOfMoveAbsStepped: target = -0.178782 mm (DAC = 39055)
17-03-17 18:11:21.058 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:11:21.058 -07 000000382 INF: FPGA: Recv ZSGSRD 37123
17-03-17 18:11:21.068 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:11:21.078 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:11:21.078 -07 000000627 INF: FPGA: Recv ZSGSRD 37112
17-03-17 18:11:21.088 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 18:11:21.088 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:11:21.088 -07 000000501 INF: FPGA: Recv ZSGSRD 37118
17-03-17 18:11:21.098 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:11:21.108 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:11:21.108 -07 000000608 INF: FPGA: Recv ZSGSRD 37129
17-03-17 18:11:21.118 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 18:11:21.118 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:11:21.118 -07 000000459 INF: FPGA: Recv ZSGSRD 37120
17-03-17 18:11:21.128 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:11:21.148 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:11:21.148 -07 000000012 INF: FPGA: Recv ZSGSRD 37115
17-03-17 18:11:21.158 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:11:21.168 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:11:21.168 -07 000000627 INF: FPGA: Recv ZSGSRD 37112
17-03-17 18:11:21.178 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 20 ms overall
17-03-17 18:11:21.178 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:11:21.178 -07 000000512 INF: FPGA: Recv ZSGSRD 37117
17-03-17 18:11:21.188 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:11:21.188 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:11:21.188 -07 000000593 INF: FPGA: Recv ZSGSRD 37125
17-03-17 18:11:21.198 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:11:21.198 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:11:21.198 -07 000000627 INF: FPGA: Recv ZSGSRD 37121
17-03-17 18:11:21.208 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:11:21.208 -07 000000551 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:11:21.208 -07 000000512 INF: FPGA: Recv ZPIEZORD 33398
17-03-17 18:11:21.218 -07 000000551 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:11:21.218 -07 000000551 INF: Z Motor: Piezo is near 51.3 V (nominally 0 to 100 V), expect near 59.6 V, since DAC is at 5.959 V. Piezo Error = -8.2 V.
17-03-17 18:11:21.218 -07 000000551 INF: Z Motor: ReadAdcAverage: Commanded Z = -178.8 um, Read 10 ADC samples: Avg = 37119 (-177.9 uncal um), Error = 0.9 uncal um, Median = 37119 (-177.9 uncal um), StdDev = 6 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 37112 (-177.8 uncal um), Max = 37129 (-178.0 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 18:11:21.218 -07 000000551 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37119, posNoise = 10, negNoise = 7
17-03-17 18:11:21.218 -07 000000551 INF: Z Motor: After move to -0.178782, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:11:21.218 -07 000000551 INF: Z Motor: Settle wait time = 1422 ms, measure time = 157 ms (allowed 150 ms), total time = 1579 ms
17-03-17 18:11:21.218 -07 000000551 INF: Z Motor: Warning: Actual position measuring time = 157 ms, longer than max expected time of 150 ms
17-03-17 18:11:21.218 -07 000000551 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1587 ms
17-03-17 18:11:21.218 -07 000000551 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:11:21.218 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:11:21.218 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:11:21.218 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:11:21.218 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:11:21.218 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:11:21.218 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:11:21.218 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:11:21.218 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:11:21.228 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 18:11:21.228 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:11:21.238 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-17 18:11:21.238 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 20 ms.
17-03-17 18:11:21.238 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:11:21.288 -07 000000551 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:11:21.488 -07 000000627 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:11:21.488 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:11:21.488 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:11:21.488 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2468220576, 0x0, 559484976) start.
17-03-17 18:11:21.528 -07 000000433 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:11:21.528 -07 000000433 INF: FPGA: Recv CAMSNAP
17-03-17 18:11:21.528 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 273 ms to get response, and 285 ms overall
17-03-17 18:11:21.568 -07 000000551 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:11:21.618 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2468220576, 0x0, 559484976) end. Duration was 124 ms.
17-03-17 18:11:21.618 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:11:21.618 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 18:11:21.618 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 127 ms.
17-03-17 18:11:21.638 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 9. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=90, R2=99, Total=189. Warn if over 250 bubbles per interval.
17-03-17 18:11:21.728 -07 000000433 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:11:21.728 -07 000000627 INF: Autofocus start
17-03-17 18:11:21.728 -07 000000627 INF: MeasureProfile start
17-03-17 18:11:21.728 -07 000000551 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:11:21.738 -07 000000433 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:11:21.738 -07 000000433 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:11:21.738 -07 000000627 INF: MeasureProfile done
17-03-17 18:11:21.738 -07 000000627 INF: X=-16  Z correction [um]=-0.1496812
17-03-17 18:11:21.738 -07 000000627 INF: Autofocus finished
17-03-17 18:11:21.938 -07 000000627 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:11:21.938 -07 000000433 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:11:21.938 -07 000000610 INF: ------------ Scan Snapping tile 2 at Y-position 60.73388671875, Z-position -0.17878368250116. ----------
17-03-17 18:11:21.938 -07 000000610 INF: Cycle	10	Tile	2	Exposure Settings		A	392	G	188	T	188	C	392
17-03-17 18:11:21.948 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37534, sync = True, waitForSettling = True)
17-03-17 18:11:21.948 -07 000000610 INF: Z Motor: Moving to -0.171820 mm, started at -0.178784 mm, distance = 6.96 um
17-03-17 18:11:21.948 -07 000000610 INF: FPGA: Xmit ZDACW 37534\n [Z Motor]
17-03-17 18:11:21.948 -07 000000627 INF: FPGA: Recv ZDACW
17-03-17 18:11:21.958 -07 000000610 INF: FPGA: 'ZDACW 37534' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:11:21.958 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:11:21.958 -07 000000551 INF: FPGA: Recv ZDACR 37534
17-03-17 18:11:21.968 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:11:21.968 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:11:22.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:11:22.118 -07 000000627 INF: FPGA: Recv ZSGSRD 36040
17-03-17 18:11:22.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:11:22.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:11:22.128 -07 000000551 INF: FPGA: Recv ZSGSRD 36036
17-03-17 18:11:22.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:11:22.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:11:22.138 -07 000000551 INF: FPGA: Recv ZSGSRD 36037
17-03-17 18:11:22.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:11:22.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:11:22.148 -07 000000551 INF: FPGA: Recv ZSGSRD 36040
17-03-17 18:11:22.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:11:22.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:11:22.158 -07 000000433 INF: FPGA: Recv ZSGSRD 36033
17-03-17 18:11:22.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:11:22.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:11:22.168 -07 000000627 INF: FPGA: Recv ZSGSRD 36042
17-03-17 18:11:22.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:11:22.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:11:22.178 -07 000000551 INF: FPGA: Recv ZSGSRD 36033
17-03-17 18:11:22.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:11:22.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:11:22.188 -07 000000551 INF: FPGA: Recv ZSGSRD 36040
17-03-17 18:11:22.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:11:22.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:11:22.198 -07 000000433 INF: FPGA: Recv ZSGSRD 36043
17-03-17 18:11:22.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:11:22.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:11:22.208 -07 000000433 INF: FPGA: Recv ZSGSRD 36035
17-03-17 18:11:22.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:11:22.218 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:11:22.218 -07 000000627 INF: FPGA: Recv ZPIEZORD 31966
17-03-17 18:11:22.228 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:11:22.228 -07 000000610 INF: Z Motor: Piezo is near 48.3 V (nominally 0 to 100 V), expect near 57.3 V, since DAC is at 5.727 V. Piezo Error = -9.0 V.
17-03-17 18:11:22.228 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.8 um, Read 10 ADC samples: Avg = 36038 (-171.0 uncal um), Error = 0.9 uncal um, Median = 36038 (-171.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 36033 (-170.9 uncal um), Max = 36043 (-171.0 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 18:11:22.228 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36038, posNoise = 5, negNoise = 5
17-03-17 18:11:22.228 -07 000000610 INF: Z Motor: After move to -0.171820, error = -0.000019, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:11:22.228 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 18:11:22.228 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:11:22.228 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:11:22.228 -07 000000433 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:11:22.228 -07 000000627 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:11:22.228 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:11:22.228 -07 000000551 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:11:22.228 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:11:22.228 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:11:22.228 -07 000000433 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:11:22.228 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:11:22.228 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:11:22.228 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:11:22.238 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 18:11:22.238 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:11:22.238 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 18:11:22.238 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:11:22.238 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 18:11:22.238 -07 000000627 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 18:11:22.248 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 18:11:22.248 -07 000000433 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 18:11:22.248 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 392 392 188 188 37711 150\n [Camera]
17-03-17 18:11:22.448 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:11:22.838 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 584
17-03-17 18:11:22.838 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 584
17-03-17 18:11:22.838 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:11:22.838 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:11:22.838 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 2482896656, 0x0, 391868352) start.
17-03-17 18:11:22.838 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 584
17-03-17 18:11:22.838 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 584
17-03-17 18:11:22.838 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:11:22.848 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:11:22.848 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 2620985504, 0x0, 418435064) start.
17-03-17 18:11:23.028 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37711 777
17-03-17 18:11:23.178 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP turning grn on 927
17-03-17 18:11:23.238 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 2482896656, 0x0, 391868352) end. Duration was 399 ms.
17-03-17 18:11:23.238 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 18:11:23.238 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:11:23.238 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 2620985504, 0x0, 418435064) end. Duration was 399 ms.
17-03-17 18:11:23.238 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 18:11:23.238 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:11:23.248 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:11:23.248 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 18:11:23.248 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:11:23.248 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-17 18:11:23.528 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1115
17-03-17 18:11:23.528 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1115
17-03-17 18:11:23.528 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1115
17-03-17 18:11:23.528 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1115
17-03-17 18:11:23.528 -07 000000433 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:11:23.528 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:11:23.528 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:11:23.528 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 18:11:23.538 -07 000000433 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:11:23.538 -07 000000433 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-17 18:11:23.558 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP 1307
17-03-17 18:11:23.558 -07 000000551 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:11:23.558 -07 000000610 INF: FPGA: 'CAMDBLSNAP 392 392 188 188 37711 150' command took 2 ms to send, 1309 ms to get response, and 1314 ms overall
17-03-17 18:11:23.568 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 18:11:23.568 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 3 at Y-position 60.73388671875, Z-Position -0.171839109175916. ------
17-03-17 18:11:23.568 -07 000000541 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:11:23.568 -07 000000415 INF: Y Motor: MoveYZ optimized starting. Moving Y to 61.5726 mm, moving Z to -0.17836 mm
17-03-17 18:11:23.568 -07 000000415 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:11:23.568 -07 000000480 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:11:23.568 -07 000000502 INF: Y Motor: Entering MoveAbsStepped (target = 98516 steps, sync = True, waitForSettling = True)
17-03-17 18:11:23.568 -07 000000502 INF: Y Motor: Moving to 61.5726 mm, started at 60.7339 mm, delta = 0.8387 mm
17-03-17 18:11:23.568 -07 000000551 INF: Z Motor: Entering MoveAbsStepped (DAC = 38963, sync = True, waitForSettling = False)
17-03-17 18:11:23.568 -07 000000551 INF: Z Motor: Moving to -0.178361 mm, started at -0.171839 mm, distance = -6.52 um
17-03-17 18:11:23.578 -07 000000541 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 18:11:23.578 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:11:23.578 -07 000000480 INF: FPGA: Recv YRDPOS 124383
17-03-17 18:11:23.588 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 18:11:23.588 -07 000000502 INF: Y Motor: Encoder = 124383 = motor step 97174.2 = 60.7339 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:11:23.588 -07 000000502 INF: Y Motor: Last commanded position = 60.7426 mm (97188.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:11:23.588 -07 000000502 INF: Y Motor: Moving 1342 steps-19
17-03-17 18:11:23.588 -07 000000551 INF: FPGA: Xmit ZDACW 38963\n [Z Motor]
17-03-17 18:11:23.588 -07 000000012 INF: FPGA: Recv ZDACW
17-03-17 18:11:23.598 -07 000000541 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:11:23.598 -07 000000551 INF: FPGA: 'ZDACW 38963' command took 0 ms to send, 0 ms to get response, and 20 ms overall
17-03-17 18:11:23.608 -07 000000502 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:11:23.618 -07 000000551 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:11:23.618 -07 000000486 INF: FPGA: Recv ZDACR 38963
17-03-17 18:11:23.628 -07 000000551 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:11:23.628 -07 000000551 INF: Z Motor: MoveAbsStepped took 51 ms (did NOT wait for settling yet))
17-03-17 18:11:23.798 -07 000000512 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:11:23.798 -07 000000541 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 18:11:23.928 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 398 ms.
17-03-17 18:11:23.928 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-17 18:11:23.928 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:11:23.928 -07 000000433 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 393 ms.
17-03-17 18:11:23.928 -07 000000433 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-17 18:11:23.928 -07 000000433 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:11:23.938 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:11:23.938 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:11:23.938 -07 000000433 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-17 18:11:23.938 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-17 18:11:23.978 -07 000000501 INF: FPGA: Recv YMVTILE
17-03-17 18:11:23.978 -07 000000502 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 18:11:24.018 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:11:24.018 -07 000000551 INF: FPGA: Recv YRDPOS 126084
17-03-17 18:11:24.028 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:11:24.028 -07 000000502 INF: Y Motor: Encoder = 126084 = motor step 98503.1 = 61.5645 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:11:24.028 -07 000000502 INF: Y Motor: Position error before settling (table move) = -17 encoder counts (-0.008 mm)
17-03-17 18:11:24.028 -07 000000502 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.839 mm, average velocity = 2.113 mm/sec
17-03-17 18:11:24.978 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:11:24.978 -07 000000551 INF: FPGA: Recv YRDPOS 126084
17-03-17 18:11:24.988 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:11:24.988 -07 000000502 INF: Y Motor: Encoder = 126084 = motor step 98503.1 = 61.5645 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:11:24.998 -07 000000502 INF: Y Motor: After move to 61.572609, error = -0.008156, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:11:24.998 -07 000000502 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:11:24.998 -07 000000502 INF: Y Motor: Moved to 61.5645 after 1431 ms (table move)
17-03-17 18:11:25.008 -07 000000415 INF: Z Motor: EndOfMoveAbsStepped: target = -0.178361 mm (DAC = 38963)
17-03-17 18:11:25.008 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:11:25.008 -07 000000501 INF: FPGA: Recv ZSGSRD 37060
17-03-17 18:11:25.018 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:11:25.018 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:11:25.018 -07 000000433 INF: FPGA: Recv ZSGSRD 37052
17-03-17 18:11:25.028 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:11:25.028 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:11:25.028 -07 000000551 INF: FPGA: Recv ZSGSRD 37052
17-03-17 18:11:25.038 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:11:25.038 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:11:25.038 -07 000000593 INF: FPGA: Recv ZSGSRD 37049
17-03-17 18:11:25.048 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:11:25.048 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:11:25.048 -07 000000501 INF: FPGA: Recv ZSGSRD 37058
17-03-17 18:11:25.058 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:11:25.058 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:11:25.058 -07 000000627 INF: FPGA: Recv ZSGSRD 37054
17-03-17 18:11:25.068 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:11:25.068 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:11:25.068 -07 000000502 INF: FPGA: Recv ZSGSRD 37064
17-03-17 18:11:25.078 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:11:25.078 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:11:25.078 -07 000000618 INF: FPGA: Recv ZSGSRD 37053
17-03-17 18:11:25.088 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:11:25.088 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:11:25.088 -07 000000593 INF: FPGA: Recv ZSGSRD 37050
17-03-17 18:11:25.098 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:11:25.098 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:11:25.098 -07 000000480 INF: FPGA: Recv ZSGSRD 37051
17-03-17 18:11:25.108 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:11:25.108 -07 000000415 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:11:25.108 -07 000000501 INF: FPGA: Recv ZPIEZORD 33344
17-03-17 18:11:25.118 -07 000000415 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:11:25.118 -07 000000415 INF: Z Motor: Piezo is near 51.2 V (nominally 0 to 100 V), expect near 59.5 V, since DAC is at 5.945 V. Piezo Error = -8.2 V.
17-03-17 18:11:25.118 -07 000000415 INF: Z Motor: ReadAdcAverage: Commanded Z = -178.4 um, Read 10 ADC samples: Avg = 37054 (-177.5 uncal um), Error = 0.9 uncal um, Median = 37052 (-177.5 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 37049 (-177.4 uncal um), Max = 37064 (-177.5 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 18:11:25.118 -07 000000415 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37054, posNoise = 10, negNoise = 5
17-03-17 18:11:25.118 -07 000000415 INF: Z Motor: After move to -0.178361, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:11:25.118 -07 000000415 INF: Z Motor: Settle wait time = 1433 ms, measure time = 108 ms (allowed 150 ms), total time = 1541 ms
17-03-17 18:11:25.118 -07 000000415 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-17 18:11:25.168 -07 000000415 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1595 ms
17-03-17 18:11:25.168 -07 000000415 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:11:25.168 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:11:25.168 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:11:25.178 -07 000000551 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:11:25.178 -07 000000541 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:11:25.178 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:11:25.178 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:11:25.178 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 18:11:25.178 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:11:25.178 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:11:25.178 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:11:25.188 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 18:11:25.188 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-17 18:11:25.188 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:11:25.238 -07 000000459 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:11:25.438 -07 000000618 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:11:25.438 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:11:25.438 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:11:25.438 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 675221432, 0x0, 559484976) start.
17-03-17 18:11:25.468 -07 000000502 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:11:25.478 -07 000000415 INF: FPGA: Recv CAMSNAP
17-03-17 18:11:25.478 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 280 ms to get response, and 284 ms overall
17-03-17 18:11:25.548 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 675221432, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 18:11:25.548 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:11:25.548 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 18:11:25.548 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 18:11:25.578 -07 000000486 INF: Autofocus start
17-03-17 18:11:25.578 -07 000000486 INF: MeasureProfile start
17-03-17 18:11:25.578 -07 000000551 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:11:25.578 -07 000000012 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:11:25.588 -07 000000551 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:11:25.588 -07 000000551 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:11:25.588 -07 000000486 INF: MeasureProfile done
17-03-17 18:11:25.588 -07 000000486 INF: X=64  Z correction [um]=0.2557664
17-03-17 18:11:25.588 -07 000000486 INF: Autofocus finished
17-03-17 18:11:25.788 -07 000000501 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:11:25.788 -07 000000551 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:11:25.788 -07 000000610 INF: ------------ Scan Snapping tile 3 at Y-position 61.564453125, Z-position -0.178366108711945. ----------
17-03-17 18:11:25.788 -07 000000610 INF: Cycle	10	Tile	3	Exposure Settings		A	392	G	188	T	188	C	392
17-03-17 18:11:25.798 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37531, sync = True, waitForSettling = True)
17-03-17 18:11:25.798 -07 000000610 INF: Z Motor: Moving to -0.171806 mm, started at -0.178366 mm, distance = 6.56 um
17-03-17 18:11:25.798 -07 000000610 INF: FPGA: Xmit ZDACW 37531\n [Z Motor]
17-03-17 18:11:25.798 -07 000000415 INF: FPGA: Recv ZDACW
17-03-17 18:11:25.808 -07 000000610 INF: FPGA: 'ZDACW 37531' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:11:25.808 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:11:25.808 -07 000000541 INF: FPGA: Recv ZDACR 37531
17-03-17 18:11:25.818 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:11:25.818 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:11:25.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:11:25.968 -07 000000486 INF: FPGA: Recv ZSGSRD 36040
17-03-17 18:11:25.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:11:25.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:11:25.978 -07 000000541 INF: FPGA: Recv ZSGSRD 36031
17-03-17 18:11:25.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:11:25.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:11:25.988 -07 000000486 INF: FPGA: Recv ZSGSRD 36038
17-03-17 18:11:25.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:11:25.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:11:25.998 -07 000000502 INF: FPGA: Recv ZSGSRD 36035
17-03-17 18:11:26.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:11:26.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:11:26.008 -07 000000415 INF: FPGA: Recv ZSGSRD 36036
17-03-17 18:11:26.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:11:26.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:11:26.018 -07 000000502 INF: FPGA: Recv ZSGSRD 36037
17-03-17 18:11:26.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:11:26.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:11:26.028 -07 000000480 INF: FPGA: Recv ZSGSRD 36033
17-03-17 18:11:26.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:11:26.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:11:26.038 -07 000000480 INF: FPGA: Recv ZSGSRD 36037
17-03-17 18:11:26.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:11:26.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:11:26.048 -07 000000480 INF: FPGA: Recv ZSGSRD 36032
17-03-17 18:11:26.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:11:26.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:11:26.058 -07 000000459 INF: FPGA: Recv ZSGSRD 36032
17-03-17 18:11:26.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:11:26.068 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:11:26.068 -07 000000480 INF: FPGA: Recv ZPIEZORD 31940
17-03-17 18:11:26.078 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:11:26.078 -07 000000610 INF: Z Motor: Piezo is near 48.2 V (nominally 0 to 100 V), expect near 57.3 V, since DAC is at 5.727 V. Piezo Error = -9.0 V.
17-03-17 18:11:26.078 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.8 um, Read 10 ADC samples: Avg = 36035 (-170.9 uncal um), Error = 0.9 uncal um, Median = 36036 (-170.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 36031 (-170.9 uncal um), Max = 36040 (-171.0 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 18:11:26.078 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36035, posNoise = 5, negNoise = 4
17-03-17 18:11:26.078 -07 000000610 INF: Z Motor: After move to -0.171806, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:11:26.078 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 18:11:26.078 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:11:26.078 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:11:26.078 -07 000000480 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:11:26.078 -07 000000459 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:11:26.078 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:11:26.078 -07 000000459 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:11:26.078 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:11:26.078 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:11:26.078 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:11:26.078 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:11:26.078 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:11:26.078 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:11:26.088 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 18:11:26.088 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:11:26.088 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 18:11:26.088 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:11:26.098 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 18:11:26.098 -07 000000459 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 18:11:26.098 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 18:11:26.098 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 18:11:26.108 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 392 392 188 188 37708 150\n [Camera]
17-03-17 18:11:26.188 -07 000000459 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 10, FrontChillerTemperature: 3.99219,
17-03-17 18:11:26.298 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:11:26.568 -07 000000459 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:11:26.568 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 9. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=90, R2=99, Total=189. Warn if over 250 bubbles per interval.
17-03-17 18:11:26.698 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 584
17-03-17 18:11:26.698 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 584
17-03-17 18:11:26.698 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 584
17-03-17 18:11:26.698 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:11:26.698 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:11:26.698 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 2472625880, 0x0, 391868352) start.
17-03-17 18:11:26.698 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 584
17-03-17 18:11:26.698 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:11:26.818 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:11:26.818 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 18:11:26.888 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37708 777
17-03-17 18:11:27.038 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP turning grn on 927
17-03-17 18:11:27.088 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 2472625880, 0x0, 391868352) end. Duration was 385 ms.
17-03-17 18:11:27.088 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 18:11:27.088 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:11:27.088 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-17 18:11:27.088 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 18:11:27.188 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 376 ms.
17-03-17 18:11:27.188 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-17 18:11:27.188 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:11:27.198 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:11:27.198 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 500 ms.
17-03-17 18:11:27.228 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1115
17-03-17 18:11:27.228 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1115
17-03-17 18:11:27.228 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:11:27.228 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1115
17-03-17 18:11:27.228 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1115
17-03-17 18:11:27.228 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:11:27.228 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:11:27.228 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2508048144, 0x0, 418435064) start.
17-03-17 18:11:27.238 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:11:27.238 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-17 18:11:27.418 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP 1308
17-03-17 18:11:27.418 -07 000000627 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:11:27.418 -07 000000610 INF: FPGA: 'CAMDBLSNAP 392 392 188 188 37708 150' command took 2 ms to send, 1305 ms to get response, and 1314 ms overall
17-03-17 18:11:27.418 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 18:11:27.418 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 4 at Y-position 61.564453125, Z-Position -0.171819836539491. ------
17-03-17 18:11:27.428 -07 000000551 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:11:27.428 -07 000000593 INF: Y Motor: MoveYZ optimized starting. Moving Y to 62.4026 mm, moving Z to -0.17800 mm
17-03-17 18:11:27.428 -07 000000593 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:11:27.428 -07 000000415 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:11:27.428 -07 000000382 INF: Y Motor: Entering MoveAbsStepped (target = 99844 steps, sync = True, waitForSettling = True)
17-03-17 18:11:27.428 -07 000000627 INF: Z Motor: Entering MoveAbsStepped (DAC = 38884, sync = True, waitForSettling = False)
17-03-17 18:11:27.428 -07 000000627 INF: Z Motor: Moving to -0.178000 mm, started at -0.171820 mm, distance = -6.18 um
17-03-17 18:11:27.428 -07 000000382 INF: Y Motor: Moving to 62.4026 mm, started at 61.5645 mm, delta = 0.8382 mm
17-03-17 18:11:27.438 -07 000000551 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:11:27.438 -07 000000627 INF: FPGA: Xmit ZDACW 38884\n [Z Motor]
17-03-17 18:11:27.438 -07 000000433 INF: FPGA: Recv ZDACW
17-03-17 18:11:27.448 -07 000000627 INF: FPGA: 'ZDACW 38884' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-17 18:11:27.448 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:11:27.448 -07 000000012 INF: FPGA: Recv YRDPOS 126084
17-03-17 18:11:27.458 -07 000000551 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:11:27.458 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-17 18:11:27.458 -07 000000382 INF: Y Motor: Encoder = 126084 = motor step 98503.1 = 61.5645 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:11:27.458 -07 000000382 INF: Y Motor: Last commanded position = 61.5726 mm (98516.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:11:27.458 -07 000000382 INF: Y Motor: Moving 1341 steps-17
17-03-17 18:11:27.468 -07 000000627 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:11:27.468 -07 000000459 INF: FPGA: Recv ZDACR 38884
17-03-17 18:11:27.478 -07 000000382 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:11:27.478 -07 000000627 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:11:27.478 -07 000000627 INF: Z Motor: MoveAbsStepped took 43 ms (did NOT wait for settling yet))
17-03-17 18:11:27.628 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2508048144, 0x0, 418435064) end. Duration was 401 ms.
17-03-17 18:11:27.628 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-17 18:11:27.628 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:11:27.638 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:11:27.638 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 405 ms.
17-03-17 18:11:27.638 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-17 18:11:27.638 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:11:27.648 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:11:27.648 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 416 ms.
17-03-17 18:11:27.648 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-17 18:11:27.658 -07 000000415 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:11:27.658 -07 000000551 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 196 ms to get response, and 225 ms overall
17-03-17 18:11:27.848 -07 000000627 INF: FPGA: Recv YMVTILE
17-03-17 18:11:27.848 -07 000000382 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 18:11:27.888 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:11:27.888 -07 000000501 INF: FPGA: Recv YRDPOS 127787
17-03-17 18:11:27.898 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:11:27.898 -07 000000382 INF: Y Motor: Encoder = 127787 = motor step 99833.6 = 62.3960 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:11:27.898 -07 000000382 INF: Y Motor: Position error before settling (table move) = -14 encoder counts (-0.007 mm)
17-03-17 18:11:27.898 -07 000000382 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.838 mm, average velocity = 2.111 mm/sec
17-03-17 18:11:28.848 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:11:28.848 -07 000000415 INF: FPGA: Recv YRDPOS 127787
17-03-17 18:11:28.858 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:11:28.858 -07 000000382 INF: Y Motor: Encoder = 127787 = motor step 99833.6 = 62.3960 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:11:28.868 -07 000000382 INF: Y Motor: After move to 62.402607, error = -0.006611, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:11:28.868 -07 000000382 INF: Y Motor: Position error after settling (table move) = -14 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:11:28.868 -07 000000382 INF: Y Motor: Moved to 62.3960 after 1441 ms (table move)
17-03-17 18:11:28.878 -07 000000593 INF: Z Motor: EndOfMoveAbsStepped: target = -0.178000 mm (DAC = 38884)
17-03-17 18:11:28.878 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:11:28.878 -07 000000501 INF: FPGA: Recv ZSGSRD 36998
17-03-17 18:11:28.888 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:11:28.888 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:11:28.888 -07 000000501 INF: FPGA: Recv ZSGSRD 36994
17-03-17 18:11:28.898 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:11:28.898 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:11:28.898 -07 000000501 INF: FPGA: Recv ZSGSRD 37003
17-03-17 18:11:28.908 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:11:28.908 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:11:28.908 -07 000000415 INF: FPGA: Recv ZSGSRD 37004
17-03-17 18:11:28.918 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:11:28.918 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:11:28.918 -07 000000501 INF: FPGA: Recv ZSGSRD 37000
17-03-17 18:11:28.928 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:11:28.928 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:11:28.928 -07 000000501 INF: FPGA: Recv ZSGSRD 37004
17-03-17 18:11:28.938 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:11:28.938 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:11:28.938 -07 000000501 INF: FPGA: Recv ZSGSRD 36998
17-03-17 18:11:28.948 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:11:28.948 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:11:28.948 -07 000000415 INF: FPGA: Recv ZSGSRD 37000
17-03-17 18:11:28.958 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:11:28.958 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:11:28.958 -07 000000501 INF: FPGA: Recv ZSGSRD 36993
17-03-17 18:11:28.968 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:11:28.968 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:11:28.968 -07 000000501 INF: FPGA: Recv ZSGSRD 36993
17-03-17 18:11:28.978 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:11:28.978 -07 000000593 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:11:28.978 -07 000000501 INF: FPGA: Recv ZPIEZORD 33242
17-03-17 18:11:28.988 -07 000000593 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:11:28.988 -07 000000593 INF: Z Motor: Piezo is near 51.0 V (nominally 0 to 100 V), expect near 59.3 V, since DAC is at 5.933 V. Piezo Error = -8.3 V.
17-03-17 18:11:28.988 -07 000000593 INF: Z Motor: ReadAdcAverage: Commanded Z = -178.0 um, Read 10 ADC samples: Avg = 36999 (-177.1 uncal um), Error = 0.9 uncal um, Median = 36999 (-177.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 36993 (-177.1 uncal um), Max = 37004 (-177.2 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 18:11:28.988 -07 000000593 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36999, posNoise = 5, negNoise = 6
17-03-17 18:11:28.988 -07 000000593 INF: Z Motor: After move to -0.178000, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:11:28.988 -07 000000593 INF: Z Motor: Settle wait time = 1446 ms, measure time = 107 ms (allowed 150 ms), total time = 1553 ms
17-03-17 18:11:28.988 -07 000000593 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-17 18:11:29.038 -07 000000593 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1608 ms
17-03-17 18:11:29.038 -07 000000593 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:11:29.038 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:11:29.038 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:11:29.038 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:11:29.038 -07 000000433 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:11:29.038 -07 000000608 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:11:29.038 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:11:29.048 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:11:29.048 -07 000000608 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:11:29.048 -07 000000608 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:11:29.048 -07 000000608 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:11:29.058 -07 000000608 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-17 18:11:29.058 -07 000000608 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-17 18:11:29.058 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:11:29.108 -07 000000501 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:11:29.308 -07 000000501 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:11:29.308 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:11:29.308 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:11:29.308 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 675221432, 0x0, 559484976) start.
17-03-17 18:11:29.348 -07 000000608 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:11:29.348 -07 000000551 INF: FPGA: Recv CAMSNAP
17-03-17 18:11:29.348 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 276 ms to get response, and 286 ms overall
17-03-17 18:11:29.438 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 675221432, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 18:11:29.438 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:11:29.438 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 18:11:29.438 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 130 ms.
17-03-17 18:11:29.548 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:11:30.418 -07 000000486 INF: Autofocus start
17-03-17 18:11:30.418 -07 000000486 INF: MeasureProfile start
17-03-17 18:11:30.428 -07 000000486 INF: MeasureProfile done
17-03-17 18:11:30.428 -07 000000486 INF: X=0  Z correction [um]=-0.0713522
17-03-17 18:11:30.428 -07 000000486 INF: Autofocus finished
17-03-17 18:11:30.428 -07 000000486 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:11:30.428 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 875 ms to get response, and 880 ms overall
17-03-17 18:11:30.428 -07 000000501 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:11:30.628 -07 000000486 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:11:30.628 -07 000000501 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 198 ms to get response, and 202 ms overall
17-03-17 18:11:30.638 -07 000000610 INF: ------------ Scan Snapping tile 4 at Y-position 62.39599609375, Z-position -0.178012777044149. ----------
17-03-17 18:11:30.638 -07 000000610 INF: Cycle	10	Tile	4	Exposure Settings		A	392	G	188	T	188	C	392
17-03-17 18:11:30.638 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37381, sync = True, waitForSettling = True)
17-03-17 18:11:30.638 -07 000000610 INF: Z Motor: Moving to -0.171119 mm, started at -0.178013 mm, distance = 6.89 um
17-03-17 18:11:30.638 -07 000000610 INF: FPGA: Xmit ZDACW 37381\n [Z Motor]
17-03-17 18:11:30.648 -07 000000501 INF: FPGA: Recv ZDACW
17-03-17 18:11:30.658 -07 000000610 INF: FPGA: 'ZDACW 37381' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:11:30.658 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:11:30.658 -07 000000501 INF: FPGA: Recv ZDACR 37381
17-03-17 18:11:30.668 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:11:30.668 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:11:30.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:11:30.818 -07 000000501 INF: FPGA: Recv ZSGSRD 35924
17-03-17 18:11:30.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:11:30.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:11:30.828 -07 000000486 INF: FPGA: Recv ZSGSRD 35930
17-03-17 18:11:30.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:11:30.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:11:30.838 -07 000000486 INF: FPGA: Recv ZSGSRD 35927
17-03-17 18:11:30.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:11:30.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:11:30.848 -07 000000486 INF: FPGA: Recv ZSGSRD 35930
17-03-17 18:11:30.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:11:30.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:11:30.858 -07 000000486 INF: FPGA: Recv ZSGSRD 35929
17-03-17 18:11:30.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:11:30.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:11:30.868 -07 000000486 INF: FPGA: Recv ZSGSRD 35927
17-03-17 18:11:30.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:11:30.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:11:30.878 -07 000000501 INF: FPGA: Recv ZSGSRD 35930
17-03-17 18:11:30.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:11:30.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:11:30.888 -07 000000501 INF: FPGA: Recv ZSGSRD 35923
17-03-17 18:11:30.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:11:30.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:11:30.898 -07 000000501 INF: FPGA: Recv ZSGSRD 35927
17-03-17 18:11:30.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:11:30.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:11:30.908 -07 000000501 INF: FPGA: Recv ZSGSRD 35926
17-03-17 18:11:30.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:11:30.918 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:11:30.918 -07 000000501 INF: FPGA: Recv ZPIEZORD 31852
17-03-17 18:11:30.928 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:11:30.928 -07 000000610 INF: Z Motor: Piezo is near 48.0 V (nominally 0 to 100 V), expect near 57.0 V, since DAC is at 5.704 V. Piezo Error = -9.0 V.
17-03-17 18:11:30.928 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.1 um, Read 10 ADC samples: Avg = 35927 (-170.2 uncal um), Error = 0.9 uncal um, Median = 35927 (-170.2 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 35923 (-170.2 uncal um), Max = 35930 (-170.3 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 18:11:30.928 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35927, posNoise = 3, negNoise = 4
17-03-17 18:11:30.928 -07 000000610 INF: Z Motor: After move to -0.171119, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:11:30.928 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 18:11:30.928 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:11:30.928 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:11:30.928 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:11:30.928 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:11:30.938 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:11:30.938 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:11:30.938 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 18:11:30.938 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:11:30.938 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 18:11:30.938 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:11:30.948 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 18:11:30.948 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 12 ms.
17-03-17 18:11:30.948 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:11:30.948 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:11:30.948 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 18:11:30.948 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:11:30.958 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 18:11:30.958 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:11:30.958 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 18:11:30.958 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 11 ms.
17-03-17 18:11:30.968 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 392 392 188 188 37558 150\n [Camera]
17-03-17 18:11:31.168 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:11:31.548 -07 000000502 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 10, FrontChillerTemperature: 3.985358,
17-03-17 18:11:31.558 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 584
17-03-17 18:11:31.558 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 584
17-03-17 18:11:31.558 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:11:31.558 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:11:31.558 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 1056706608, 0x0, 391868352) start.
17-03-17 18:11:31.558 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 584
17-03-17 18:11:31.558 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 584
17-03-17 18:11:31.558 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:11:31.558 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:11:31.558 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 1092128872, 0x0, 418435064) start.
17-03-17 18:11:31.568 -07 000000433 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:11:31.568 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 9. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=90, R2=99, Total=189. Warn if over 250 bubbles per interval.
17-03-17 18:11:31.748 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37558 777
17-03-17 18:11:31.898 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning grn on 927
17-03-17 18:11:31.938 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 1056706608, 0x0, 391868352) end. Duration was 380 ms.
17-03-17 18:11:31.938 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 18:11:31.938 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:11:31.938 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:11:31.938 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 18:11:31.938 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 1092128872, 0x0, 418435064) end. Duration was 379 ms.
17-03-17 18:11:31.938 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-17 18:11:31.938 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:11:31.948 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:11:31.948 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 18:11:32.088 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1115
17-03-17 18:11:32.088 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1115
17-03-17 18:11:32.088 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:11:32.088 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:11:32.088 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 1127551136, 0x0, 391868352) start.
17-03-17 18:11:32.088 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1115
17-03-17 18:11:32.088 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1115
17-03-17 18:11:32.088 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:11:32.088 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:11:32.088 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 18:11:32.278 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP 1308
17-03-17 18:11:32.278 -07 000000502 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:11:32.278 -07 000000610 INF: FPGA: 'CAMDBLSNAP 392 392 188 188 37558 150' command took 2 ms to send, 1305 ms to get response, and 1314 ms overall
17-03-17 18:11:32.278 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 18:11:32.278 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 5 at Y-position 62.39599609375, Z-Position -0.171126021628181. ------
17-03-17 18:11:32.288 -07 000000459 INF: Y Motor: MoveYZ optimized starting. Moving Y to 63.2326 mm, moving Z to -0.17773 mm
17-03-17 18:11:32.288 -07 000000459 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:11:32.288 -07 000000433 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:11:32.288 -07 000000512 INF: Y Motor: Entering MoveAbsStepped (target = 101172 steps, sync = True, waitForSettling = True)
17-03-17 18:11:32.288 -07 000000512 INF: Y Motor: Moving to 63.2326 mm, started at 62.3960 mm, delta = 0.8366 mm
17-03-17 18:11:32.288 -07 000000012 INF: Z Motor: Entering MoveAbsStepped (DAC = 38826, sync = True, waitForSettling = False)
17-03-17 18:11:32.288 -07 000000012 INF: Z Motor: Moving to -0.177734 mm, started at -0.171126 mm, distance = -6.61 um
17-03-17 18:11:32.288 -07 000000415 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:11:32.298 -07 000000433 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:11:32.298 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:11:32.298 -07 000000415 INF: FPGA: Recv YRDPOS 127787
17-03-17 18:11:32.308 -07 000000012 INF: FPGA: Xmit ZDACW 38826\n [Z Motor]
17-03-17 18:11:32.308 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-17 18:11:32.308 -07 000000512 INF: Y Motor: Encoder = 127787 = motor step 99833.6 = 62.3960 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:11:32.308 -07 000000512 INF: Y Motor: Last commanded position = 62.4026 mm (99844.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:11:32.308 -07 000000512 INF: Y Motor: Moving 1339 steps-14
17-03-17 18:11:32.308 -07 000000502 INF: FPGA: Recv ZDACW
17-03-17 18:11:32.318 -07 000000433 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:11:32.318 -07 000000012 INF: FPGA: 'ZDACW 38826' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-17 18:11:32.328 -07 000000512 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:11:32.338 -07 000000012 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:11:32.338 -07 000000501 INF: FPGA: Recv ZDACR 38826
17-03-17 18:11:32.348 -07 000000012 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:11:32.348 -07 000000012 INF: Z Motor: MoveAbsStepped took 54 ms (did NOT wait for settling yet))
17-03-17 18:11:32.468 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 382 ms.
17-03-17 18:11:32.478 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 1127551136, 0x0, 391868352) end. Duration was 385 ms.
17-03-17 18:11:32.478 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 18:11:32.478 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:11:32.478 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-17 18:11:32.478 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:11:32.478 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:11:32.488 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 9 ms.
17-03-17 18:11:32.488 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 18:11:32.488 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 18:11:32.518 -07 000000627 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:11:32.518 -07 000000433 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 18:11:32.698 -07 000000627 INF: FPGA: Recv YMVTILE
17-03-17 18:11:32.698 -07 000000512 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 18:11:32.738 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:11:32.738 -07 000000541 INF: FPGA: Recv YRDPOS 129484
17-03-17 18:11:32.748 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:11:32.748 -07 000000512 INF: Y Motor: Encoder = 129484 = motor step 101159.4 = 63.2246 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:11:32.748 -07 000000512 INF: Y Motor: Position error before settling (table move) = -16 encoder counts (-0.008 mm)
17-03-17 18:11:32.748 -07 000000512 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.837 mm, average velocity = 2.107 mm/sec
17-03-17 18:11:33.698 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:11:33.698 -07 000000502 INF: FPGA: Recv YRDPOS 129485
17-03-17 18:11:33.708 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:11:33.708 -07 000000512 INF: Y Motor: Encoder = 129485 = motor step 101160.2 = 63.2251 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:11:33.728 -07 000000512 INF: Y Motor: After move to 63.232609, error = -0.007511, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:11:33.728 -07 000000512 INF: Y Motor: Position error after settling (table move) = -15 encoder counts (-0.007 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 18:11:33.728 -07 000000512 INF: Y Motor: Moved to 63.2251 after 1436 ms (table move)
17-03-17 18:11:33.728 -07 000000459 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177734 mm (DAC = 38826)
17-03-17 18:11:33.728 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:11:34.668 -07 000000480 INF: FPGA: Recv ZSGSRD 36953
17-03-17 18:11:34.668 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 930 ms to get response, and 934 ms overall
17-03-17 18:11:34.668 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:11:34.668 -07 000000480 INF: FPGA: Recv ZSGSRD 36957
17-03-17 18:11:34.678 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:11:34.678 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:11:34.678 -07 000000480 INF: FPGA: Recv ZSGSRD 36956
17-03-17 18:11:34.688 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:11:34.688 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:11:34.688 -07 000000480 INF: FPGA: Recv ZSGSRD 36957
17-03-17 18:11:34.698 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:11:34.698 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:11:34.698 -07 000000480 INF: FPGA: Recv ZSGSRD 36957
17-03-17 18:11:34.708 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:11:34.708 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:11:34.708 -07 000000480 INF: FPGA: Recv ZSGSRD 36956
17-03-17 18:11:34.718 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:11:34.718 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:11:34.718 -07 000000480 INF: FPGA: Recv ZSGSRD 36960
17-03-17 18:11:34.728 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:11:34.728 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:11:34.728 -07 000000480 INF: FPGA: Recv ZSGSRD 36961
17-03-17 18:11:34.738 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:11:34.738 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:11:34.738 -07 000000501 INF: FPGA: Recv ZSGSRD 36963
17-03-17 18:11:34.748 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:11:34.748 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:11:34.748 -07 000000480 INF: FPGA: Recv ZSGSRD 36954
17-03-17 18:11:34.758 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:11:34.758 -07 000000459 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:11:34.758 -07 000000480 INF: FPGA: Recv ZPIEZORD 33224
17-03-17 18:11:34.768 -07 000000459 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:11:34.768 -07 000000459 INF: Z Motor: Piezo is near 51.0 V (nominally 0 to 100 V), expect near 59.2 V, since DAC is at 5.924 V. Piezo Error = -8.3 V.
17-03-17 18:11:34.768 -07 000000459 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.7 um, Read 10 ADC samples: Avg = 36957 (-176.8 uncal um), Error = 0.9 uncal um, Median = 36957 (-176.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 36953 (-176.8 uncal um), Max = 36963 (-176.9 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 18:11:34.768 -07 000000459 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36957, posNoise = 6, negNoise = 4
17-03-17 18:11:34.768 -07 000000459 INF: Z Motor: After move to -0.177734, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:11:34.768 -07 000000459 INF: Z Motor: Settle wait time = 1439 ms, measure time = 1035 ms (allowed 150 ms), total time = 2474 ms
17-03-17 18:11:34.768 -07 000000459 INF: Z Motor: Warning: Actual position measuring time = 1035 ms, longer than max expected time of 150 ms
17-03-17 18:11:34.768 -07 000000459 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2478 ms
17-03-17 18:11:34.768 -07 000000459 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:11:34.768 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:11:34.768 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:11:34.768 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:11:34.768 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:11:34.768 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:11:34.768 -07 000000541 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:11:34.768 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 18:11:34.768 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:11:34.778 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:11:34.778 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:11:34.788 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 9 ms.
17-03-17 18:11:34.788 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 13 ms.
17-03-17 18:11:34.788 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:11:34.828 -07 000000459 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:11:35.028 -07 000000459 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:11:35.028 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:11:35.028 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:11:35.028 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1179848464, 0x0, 559484976) start.
17-03-17 18:11:35.068 -07 000000501 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:11:35.068 -07 000000541 INF: FPGA: Recv CAMSNAP
17-03-17 18:11:35.078 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 281 ms to get response, and 287 ms overall
17-03-17 18:11:35.148 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1179848464, 0x0, 559484976) end. Duration was 117 ms.
17-03-17 18:11:35.148 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:11:35.148 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-17 18:11:35.148 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 120 ms.
17-03-17 18:11:35.178 -07 000000480 INF: Autofocus start
17-03-17 18:11:35.178 -07 000000480 INF: MeasureProfile start
17-03-17 18:11:35.178 -07 000000541 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:11:35.178 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:11:35.188 -07 000000541 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:11:35.188 -07 000000541 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:11:35.188 -07 000000480 INF: MeasureProfile done
17-03-17 18:11:35.188 -07 000000480 INF: X=32  Z correction [um]=0.09220707
17-03-17 18:11:35.188 -07 000000480 INF: Autofocus finished
17-03-17 18:11:35.388 -07 000000501 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:11:35.388 -07 000000541 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:11:35.388 -07 000000610 INF: ------------ Scan Snapping tile 5 at Y-position 63.22509765625, Z-position -0.177742960134195. ----------
17-03-17 18:11:35.398 -07 000000610 INF: Cycle	10	Tile	5	Exposure Settings		A	392	G	188	T	188	C	392
17-03-17 18:11:35.398 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37359, sync = True, waitForSettling = True)
17-03-17 18:11:35.398 -07 000000610 INF: Z Motor: Moving to -0.171019 mm, started at -0.177743 mm, distance = 6.72 um
17-03-17 18:11:35.398 -07 000000610 INF: FPGA: Xmit ZDACW 37359\n [Z Motor]
17-03-17 18:11:35.398 -07 000000480 INF: FPGA: Recv ZDACW
17-03-17 18:11:35.408 -07 000000610 INF: FPGA: 'ZDACW 37359' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:11:35.408 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:11:35.408 -07 000000459 INF: FPGA: Recv ZDACR 37359
17-03-17 18:11:35.418 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:11:35.418 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:11:35.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:11:35.568 -07 000000541 INF: FPGA: Recv ZSGSRD 35909
17-03-17 18:11:35.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:11:35.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:11:35.578 -07 000000541 INF: FPGA: Recv ZSGSRD 35915
17-03-17 18:11:35.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:11:35.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:11:35.588 -07 000000501 INF: FPGA: Recv ZSGSRD 35910
17-03-17 18:11:35.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:11:35.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:11:35.598 -07 000000480 INF: FPGA: Recv ZSGSRD 35910
17-03-17 18:11:35.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:11:35.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:11:35.608 -07 000000480 INF: FPGA: Recv ZSGSRD 35914
17-03-17 18:11:35.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:11:35.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:11:35.618 -07 000000541 INF: FPGA: Recv ZSGSRD 35916
17-03-17 18:11:35.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:11:35.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:11:35.628 -07 000000541 INF: FPGA: Recv ZSGSRD 35913
17-03-17 18:11:35.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:11:35.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:11:35.638 -07 000000480 INF: FPGA: Recv ZSGSRD 35906
17-03-17 18:11:35.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:11:35.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:11:35.648 -07 000000480 INF: FPGA: Recv ZSGSRD 35913
17-03-17 18:11:35.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:11:35.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:11:35.658 -07 000000541 INF: FPGA: Recv ZSGSRD 35913
17-03-17 18:11:35.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:11:35.668 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:11:35.668 -07 000000459 INF: FPGA: Recv ZPIEZORD 31772
17-03-17 18:11:35.678 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:11:35.678 -07 000000610 INF: Z Motor: Piezo is near 47.9 V (nominally 0 to 100 V), expect near 57.0 V, since DAC is at 5.701 V. Piezo Error = -9.1 V.
17-03-17 18:11:35.678 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.0 um, Read 10 ADC samples: Avg = 35912 (-170.2 uncal um), Error = 0.9 uncal um, Median = 35913 (-170.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35906 (-170.1 uncal um), Max = 35916 (-170.2 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 18:11:35.678 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35912, posNoise = 4, negNoise = 6
17-03-17 18:11:35.678 -07 000000610 INF: Z Motor: After move to -0.171019, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:11:35.678 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 18:11:35.678 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:11:35.678 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:11:35.678 -07 000000459 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:11:35.678 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:11:35.678 -07 000000541 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:11:35.678 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:11:35.678 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:11:35.678 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:11:35.678 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:11:35.678 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:11:35.678 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:11:35.678 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:11:35.688 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 18:11:35.688 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:11:35.688 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 18:11:35.688 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:11:35.698 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 18:11:35.698 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 18:11:35.698 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 18:11:35.698 -07 000000541 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 18:11:35.708 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 392 392 188 188 37536 150\n [Camera]
17-03-17 18:11:35.898 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:11:36.298 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 584
17-03-17 18:11:36.298 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 584
17-03-17 18:11:36.298 -07 000000593 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:11:36.298 -07 000000593 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:11:36.298 -07 000000593 INF: Camera: sBCa_ReadImage(785074288, 1428998304, 0x0, 391868352) start.
17-03-17 18:11:36.298 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 584
17-03-17 18:11:36.298 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 584
17-03-17 18:11:36.298 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:11:36.298 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:11:36.298 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 1464420568, 0x0, 418435064) start.
17-03-17 18:11:36.488 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37536 777
17-03-17 18:11:36.568 -07 000000486 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:11:36.568 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 9. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=90, R2=99, Total=189. Warn if over 250 bubbles per interval.
17-03-17 18:11:36.638 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning grn on 927
17-03-17 18:11:36.698 -07 000000593 INF: Camera: sBCa_ReadImage(785074288, 1428998304, 0x0, 391868352) end. Duration was 402 ms.
17-03-17 18:11:36.698 -07 000000593 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-17 18:11:36.698 -07 000000593 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:11:36.708 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:11:36.708 -07 000000593 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-17 18:11:36.708 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 1464420568, 0x0, 418435064) end. Duration was 404 ms.
17-03-17 18:11:36.708 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-17 18:11:36.708 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:11:36.708 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:11:36.718 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-17 18:11:36.828 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1115
17-03-17 18:11:36.828 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1115
17-03-17 18:11:36.828 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:11:36.828 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:11:36.828 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 18:11:36.828 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1115
17-03-17 18:11:36.828 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1115
17-03-17 18:11:36.828 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:11:36.828 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:11:36.828 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-17 18:11:36.918 -07 000000459 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 10, FrontChillerTemperature: 4.007176,
17-03-17 18:11:37.018 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP 1307
17-03-17 18:11:37.018 -07 000000382 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:11:37.018 -07 000000610 INF: FPGA: 'CAMDBLSNAP 392 392 188 188 37536 150' command took 2 ms to send, 1304 ms to get response, and 1314 ms overall
17-03-17 18:11:37.018 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 18:11:37.018 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 6 at Y-position 63.22509765625, Z-Position -0.171029658446054. ------
17-03-17 18:11:37.148 -07 000000382 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:11:37.168 -07 000000593 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.0626 mm, moving Z to -0.17750 mm
17-03-17 18:11:37.178 -07 000000541 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:11:37.178 -07 000000382 INF: FPGA: 'FOCMRRCUR 80' command took 20 ms to send, 8 ms to get response, and 35 ms overall
17-03-17 18:11:37.178 -07 000000593 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:11:37.178 -07 000000382 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:11:37.188 -07 000000618 INF: Y Motor: Entering MoveAbsStepped (target = 102500 steps, sync = True, waitForSettling = True)
17-03-17 18:11:37.198 -07 000000433 INF: Z Motor: Entering MoveAbsStepped (DAC = 38774, sync = True, waitForSettling = False)
17-03-17 18:11:37.198 -07 000000433 INF: Z Motor: Moving to -0.177496 mm, started at -0.171030 mm, distance = -6.47 um
17-03-17 18:11:37.198 -07 000000433 INF: FPGA: Xmit ZDACW 38774\n [Z Motor]
17-03-17 18:11:37.198 -07 000000618 INF: Y Motor: Moving to 64.0626 mm, started at 63.2251 mm, delta = 0.8375 mm
17-03-17 18:11:37.198 -07 000000541 INF: FPGA: Recv ZDACW
17-03-17 18:11:37.208 -07 000000433 INF: FPGA: 'ZDACW 38774' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:11:37.208 -07 000000433 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:11:37.208 -07 000000480 INF: FPGA: Recv ZDACR 38774
17-03-17 18:11:37.218 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:11:37.218 -07 000000433 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:11:37.218 -07 000000433 INF: Z Motor: MoveAbsStepped took 14 ms (did NOT wait for settling yet))
17-03-17 18:11:37.218 -07 000000541 INF: FPGA: Recv YRDPOS 129485
17-03-17 18:11:37.228 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-17 18:11:37.228 -07 000000618 INF: Y Motor: Encoder = 129485 = motor step 101160.2 = 63.2251 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:11:37.228 -07 000000618 INF: Y Motor: Last commanded position = 63.2326 mm (101172.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:11:37.228 -07 000000618 INF: Y Motor: Moving 1340 steps-16
17-03-17 18:11:37.228 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 400 ms.
17-03-17 18:11:37.228 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 18:11:37.228 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:11:37.238 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 404 ms.
17-03-17 18:11:37.238 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-17 18:11:37.238 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:11:37.238 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 9 ms.
17-03-17 18:11:37.238 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-17 18:11:37.238 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:11:37.248 -07 000000618 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:11:37.248 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 420 ms.
17-03-17 18:11:37.388 -07 000000502 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:11:37.388 -07 000000382 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 201 ms to get response, and 202 ms overall
17-03-17 18:11:37.618 -07 000000012 INF: FPGA: Recv YMVTILE
17-03-17 18:11:37.618 -07 000000618 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 18:11:37.648 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:11:37.658 -07 000000551 INF: FPGA: Recv YRDPOS 131190
17-03-17 18:11:37.658 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 18:11:37.658 -07 000000618 INF: Y Motor: Encoder = 131190 = motor step 102492.2 = 64.0576 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:11:37.658 -07 000000618 INF: Y Motor: Position error before settling (table move) = -10 encoder counts (-0.005 mm)
17-03-17 18:11:37.658 -07 000000618 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.838 mm, average velocity = 2.104 mm/sec
17-03-17 18:11:38.608 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:11:38.608 -07 000000502 INF: FPGA: Recv YRDPOS 131190
17-03-17 18:11:38.618 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:11:38.618 -07 000000618 INF: Y Motor: Encoder = 131190 = motor step 102492.2 = 64.0576 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:11:38.628 -07 000000618 INF: Y Motor: After move to 64.062607, error = -0.004990, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:11:38.628 -07 000000618 INF: Y Motor: Position error after settling (table move) = -10 encoder counts (-0.005 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:11:38.628 -07 000000618 INF: Y Motor: Moved to 64.0576 after 1430 ms (table move)
17-03-17 18:11:38.638 -07 000000593 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177496 mm (DAC = 38774)
17-03-17 18:11:38.638 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:11:38.638 -07 000000480 INF: FPGA: Recv ZSGSRD 36916
17-03-17 18:11:38.648 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:11:38.648 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:11:38.648 -07 000000512 INF: FPGA: Recv ZSGSRD 36914
17-03-17 18:11:38.658 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:11:38.658 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:11:38.658 -07 000000512 INF: FPGA: Recv ZSGSRD 36914
17-03-17 18:11:38.668 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:11:38.668 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:11:38.668 -07 000000512 INF: FPGA: Recv ZSGSRD 36915
17-03-17 18:11:38.678 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:11:38.678 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:11:38.678 -07 000000502 INF: FPGA: Recv ZSGSRD 36927
17-03-17 18:11:38.688 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:11:38.688 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:11:38.688 -07 000000502 INF: FPGA: Recv ZSGSRD 36927
17-03-17 18:11:38.698 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:11:38.698 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:11:38.698 -07 000000502 INF: FPGA: Recv ZSGSRD 36923
17-03-17 18:11:38.708 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:11:38.708 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:11:38.708 -07 000000512 INF: FPGA: Recv ZSGSRD 36919
17-03-17 18:11:38.718 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:11:38.718 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:11:38.718 -07 000000512 INF: FPGA: Recv ZSGSRD 36916
17-03-17 18:11:38.728 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:11:38.728 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:11:38.728 -07 000000502 INF: FPGA: Recv ZSGSRD 36919
17-03-17 18:11:38.738 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:11:38.738 -07 000000593 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:11:38.738 -07 000000502 INF: FPGA: Recv ZPIEZORD 33131
17-03-17 18:11:38.748 -07 000000593 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:11:38.748 -07 000000593 INF: Z Motor: Piezo is near 50.8 V (nominally 0 to 100 V), expect near 59.2 V, since DAC is at 5.917 V. Piezo Error = -8.4 V.
17-03-17 18:11:38.748 -07 000000593 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.5 um, Read 10 ADC samples: Avg = 36919 (-176.6 uncal um), Error = 0.9 uncal um, Median = 36918 (-176.6 uncal um), StdDev = 5 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 36914 (-176.6 uncal um), Max = 36927 (-176.7 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 18:11:38.748 -07 000000593 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36919, posNoise = 8, negNoise = 5
17-03-17 18:11:38.748 -07 000000593 INF: Z Motor: After move to -0.177496, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:11:38.748 -07 000000593 INF: Z Motor: Settle wait time = 1434 ms, measure time = 111 ms (allowed 150 ms), total time = 1545 ms
17-03-17 18:11:38.748 -07 000000593 INF: Z Motor: Waiting extra 39 ms after reading position to reach expected total of 150 ms
17-03-17 18:11:38.788 -07 000000593 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1637 ms
17-03-17 18:11:38.788 -07 000000593 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:11:38.788 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:11:38.788 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:11:38.788 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:11:38.788 -07 000000593 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:11:38.788 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:11:38.788 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:11:38.788 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:11:38.788 -07 000000593 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:11:38.798 -07 000000593 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:11:38.798 -07 000000593 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:11:38.808 -07 000000593 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-17 18:11:38.808 -07 000000593 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-17 18:11:38.808 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:11:38.858 -07 000000502 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:11:39.048 -07 000000512 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:11:39.058 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:11:39.058 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:11:39.058 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 608668944, 0x0, 559484976) start.
17-03-17 18:11:39.088 -07 000000512 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:11:39.098 -07 000000502 INF: FPGA: Recv CAMSNAP
17-03-17 18:11:39.098 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 280 ms to get response, and 284 ms overall
17-03-17 18:11:39.168 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 608668944, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 18:11:39.168 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:11:39.178 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-17 18:11:39.178 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-17 18:11:39.198 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:11:39.198 -07 000000593 INF: Autofocus start
17-03-17 18:11:39.198 -07 000000593 INF: MeasureProfile start
17-03-17 18:11:39.198 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:11:39.208 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:11:39.208 -07 000000512 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:11:39.208 -07 000000593 INF: MeasureProfile done
17-03-17 18:11:39.208 -07 000000593 INF: X=0  Z correction [um]=-0.0713522
17-03-17 18:11:39.208 -07 000000593 INF: Autofocus finished
17-03-17 18:11:39.408 -07 000000502 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:11:39.408 -07 000000512 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:11:39.418 -07 000000610 INF: ------------ Scan Snapping tile 6 at Y-position 64.0576171875, Z-position -0.177498840072808. ----------
17-03-17 18:11:39.418 -07 000000610 INF: Cycle	10	Tile	6	Exposure Settings		A	392	G	188	T	188	C	392
17-03-17 18:11:39.418 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37271, sync = True, waitForSettling = True)
17-03-17 18:11:39.418 -07 000000610 INF: Z Motor: Moving to -0.170616 mm, started at -0.177499 mm, distance = 6.88 um
17-03-17 18:11:39.418 -07 000000610 INF: FPGA: Xmit ZDACW 37271\n [Z Motor]
17-03-17 18:11:39.418 -07 000000502 INF: FPGA: Recv ZDACW
17-03-17 18:11:39.428 -07 000000610 INF: FPGA: 'ZDACW 37271' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 18:11:39.428 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:11:39.428 -07 000000512 INF: FPGA: Recv ZDACR 37271
17-03-17 18:11:39.438 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:11:39.438 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:11:39.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:11:39.588 -07 000000593 INF: FPGA: Recv ZSGSRD 35846
17-03-17 18:11:39.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:11:39.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:11:39.598 -07 000000593 INF: FPGA: Recv ZSGSRD 35851
17-03-17 18:11:39.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:11:39.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:11:39.608 -07 000000593 INF: FPGA: Recv ZSGSRD 35847
17-03-17 18:11:39.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:11:39.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:11:39.618 -07 000000593 INF: FPGA: Recv ZSGSRD 35847
17-03-17 18:11:39.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:11:39.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:11:39.628 -07 000000502 INF: FPGA: Recv ZSGSRD 35853
17-03-17 18:11:39.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:11:39.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:11:39.638 -07 000000512 INF: FPGA: Recv ZSGSRD 35849
17-03-17 18:11:39.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:11:39.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:11:39.648 -07 000000512 INF: FPGA: Recv ZSGSRD 35852
17-03-17 18:11:39.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:11:39.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:11:39.658 -07 000000593 INF: FPGA: Recv ZSGSRD 35846
17-03-17 18:11:39.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:11:39.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:11:39.668 -07 000000512 INF: FPGA: Recv ZSGSRD 35843
17-03-17 18:11:39.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:11:39.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:11:39.678 -07 000000502 INF: FPGA: Recv ZSGSRD 35850
17-03-17 18:11:39.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:11:39.688 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:11:39.688 -07 000000502 INF: FPGA: Recv ZPIEZORD 31717
17-03-17 18:11:39.698 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:11:39.698 -07 000000610 INF: Z Motor: Piezo is near 47.8 V (nominally 0 to 100 V), expect near 56.9 V, since DAC is at 5.687 V. Piezo Error = -9.1 V.
17-03-17 18:11:39.698 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.6 um, Read 10 ADC samples: Avg = 35848 (-169.7 uncal um), Error = 0.9 uncal um, Median = 35848 (-169.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35843 (-169.7 uncal um), Max = 35853 (-169.8 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 18:11:39.698 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35848, posNoise = 5, negNoise = 5
17-03-17 18:11:39.698 -07 000000610 INF: Z Motor: After move to -0.170616, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:11:39.698 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-17 18:11:39.698 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:11:39.698 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:11:39.698 -07 000000459 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:11:39.698 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:11:39.698 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:11:39.698 -07 000000593 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:11:39.698 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:11:39.698 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:11:39.698 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 18:11:39.698 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:11:39.698 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 18:11:39.698 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:11:39.708 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 18:11:39.708 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:11:39.708 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 18:11:39.708 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:11:39.718 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 18:11:39.718 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 18:11:39.718 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-17 18:11:39.718 -07 000000459 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 18:11:39.718 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 392 392 188 188 37448 150\n [Camera]
17-03-17 18:11:39.918 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:11:40.308 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 584
17-03-17 18:11:40.308 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 584
17-03-17 18:11:40.308 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:11:40.308 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 584
17-03-17 18:11:40.308 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 584
17-03-17 18:11:40.308 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:11:40.318 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:11:40.318 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-17 18:11:40.318 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:11:40.318 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 18:11:40.498 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37448 777
17-03-17 18:11:40.648 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP turning grn on 927
17-03-17 18:11:40.688 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 372 ms.
17-03-17 18:11:40.688 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 373 ms.
17-03-17 18:11:40.688 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:11:40.698 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 371 ms.
17-03-17 18:11:40.698 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 372 ms.
17-03-17 18:11:40.698 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:11:40.698 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:11:40.698 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 18:11:40.698 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:11:40.708 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 18:11:40.838 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1115
17-03-17 18:11:40.838 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1115
17-03-17 18:11:40.838 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:11:40.838 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1115
17-03-17 18:11:40.848 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1115
17-03-17 18:11:40.848 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:11:40.968 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:11:40.968 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-17 18:11:40.968 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:11:40.968 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-17 18:11:41.028 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP 1307
17-03-17 18:11:41.028 -07 000000459 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:11:41.028 -07 000000610 INF: FPGA: 'CAMDBLSNAP 392 392 188 188 37448 150' command took 2 ms to send, 1308 ms to get response, and 1314 ms overall
17-03-17 18:11:41.038 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 18:11:41.038 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 7 at Y-position 64.0576171875, Z-Position -0.170618508868982. ------
17-03-17 18:11:41.038 -07 000000501 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.8926 mm, moving Z to -0.17699 mm
17-03-17 18:11:41.038 -07 000000501 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:11:41.038 -07 000000486 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:11:41.038 -07 000000593 INF: Y Motor: Entering MoveAbsStepped (target = 103828 steps, sync = True, waitForSettling = True)
17-03-17 18:11:41.038 -07 000000593 INF: Y Motor: Moving to 64.8926 mm, started at 64.0576 mm, delta = 0.8350 mm
17-03-17 18:11:41.038 -07 000000459 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:11:41.038 -07 000000502 INF: Z Motor: Entering MoveAbsStepped (DAC = 38663, sync = True, waitForSettling = False)
17-03-17 18:11:41.038 -07 000000502 INF: Z Motor: Moving to -0.176988 mm, started at -0.170619 mm, distance = -6.37 um
17-03-17 18:11:41.048 -07 000000486 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 18:11:41.048 -07 000000593 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:11:41.048 -07 000000012 INF: FPGA: Recv YRDPOS 131191
17-03-17 18:11:41.058 -07 000000502 INF: FPGA: Xmit ZDACW 38663\n [Z Motor]
17-03-17 18:11:41.058 -07 000000593 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-17 18:11:41.058 -07 000000593 INF: Y Motor: Encoder = 131191 = motor step 102493.0 = 64.0581 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:11:41.058 -07 000000551 INF: FPGA: Recv ZDACW
17-03-17 18:11:41.058 -07 000000593 INF: Y Motor: Last commanded position = 64.0626 mm (102500.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:11:41.058 -07 000000593 INF: Y Motor: Moving 1335 steps-10
17-03-17 18:11:41.068 -07 000000486 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:11:41.068 -07 000000502 INF: FPGA: 'ZDACW 38663' command took 0 ms to send, 0 ms to get response, and 21 ms overall
17-03-17 18:11:41.078 -07 000000593 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:11:41.088 -07 000000502 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:11:41.088 -07 000000459 INF: FPGA: Recv ZDACR 38663
17-03-17 18:11:41.098 -07 000000502 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:11:41.098 -07 000000502 INF: Z Motor: MoveAbsStepped took 51 ms (did NOT wait for settling yet))
17-03-17 18:11:41.268 -07 000000012 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:11:41.268 -07 000000486 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 18:11:41.348 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 380 ms.
17-03-17 18:11:41.348 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 18:11:41.348 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:11:41.348 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 382 ms.
17-03-17 18:11:41.348 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 383 ms.
17-03-17 18:11:41.348 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:11:41.358 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 18:11:41.358 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 512 ms.
17-03-17 18:11:41.358 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 18:11:41.358 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 517 ms.
17-03-17 18:11:41.448 -07 000000486 INF: FPGA: Recv YMVTILE
17-03-17 18:11:41.448 -07 000000593 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 391 ms overall
17-03-17 18:11:41.488 -07 000000593 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:11:41.488 -07 000000541 INF: FPGA: Recv YRDPOS 132873
17-03-17 18:11:41.498 -07 000000593 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:11:41.498 -07 000000593 INF: Y Motor: Encoder = 132873 = motor step 103807.0 = 64.8794 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:11:41.498 -07 000000593 INF: Y Motor: Position error before settling (table move) = -27 encoder counts (-0.013 mm)
17-03-17 18:11:41.498 -07 000000593 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 392 ms, distance = 0.835 mm, average velocity = 2.130 mm/sec
17-03-17 18:11:41.568 -07 000000459 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:11:41.568 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 9. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=90, R2=99, Total=189. Warn if over 250 bubbles per interval.
17-03-17 18:11:42.288 -07 000000551 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 10, FrontChillerTemperature: 3.989471,
17-03-17 18:11:42.448 -07 000000593 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:11:42.448 -07 000000459 INF: FPGA: Recv YRDPOS 132873
17-03-17 18:11:42.458 -07 000000593 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:11:42.458 -07 000000593 INF: Y Motor: Encoder = 132873 = motor step 103807.0 = 64.8794 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:11:42.478 -07 000000593 INF: Y Motor: After move to 64.892609, error = -0.013214, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:11:42.478 -07 000000593 INF: Y Motor: Position error after settling (table move) = -27 encoder counts (-0.013 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:11:42.478 -07 000000593 INF: Y Motor: Moved to 64.8794 after 1434 ms (table move)
17-03-17 18:11:42.478 -07 000000501 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176988 mm (DAC = 38663)
17-03-17 18:11:42.478 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:11:42.478 -07 000000541 INF: FPGA: Recv ZSGSRD 36836
17-03-17 18:11:42.488 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:11:42.488 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:11:42.488 -07 000000618 INF: FPGA: Recv ZSGSRD 36831
17-03-17 18:11:42.498 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:11:42.498 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:11:42.498 -07 000000541 INF: FPGA: Recv ZSGSRD 36834
17-03-17 18:11:42.508 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:11:42.508 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:11:42.508 -07 000000486 INF: FPGA: Recv ZSGSRD 36841
17-03-17 18:11:42.518 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:11:42.518 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:11:42.518 -07 000000459 INF: FPGA: Recv ZSGSRD 36846
17-03-17 18:11:42.528 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:11:42.528 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:11:42.528 -07 000000459 INF: FPGA: Recv ZSGSRD 36845
17-03-17 18:11:42.538 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:11:42.538 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:11:42.538 -07 000000618 INF: FPGA: Recv ZSGSRD 36841
17-03-17 18:11:42.548 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:11:42.548 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:11:42.548 -07 000000618 INF: FPGA: Recv ZSGSRD 36845
17-03-17 18:11:42.558 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:11:42.558 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:11:42.558 -07 000000618 INF: FPGA: Recv ZSGSRD 36838
17-03-17 18:11:42.568 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:11:42.568 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:11:42.568 -07 000000618 INF: FPGA: Recv ZSGSRD 36837
17-03-17 18:11:42.578 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:11:42.578 -07 000000501 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:11:42.578 -07 000000618 INF: FPGA: Recv ZPIEZORD 33081
17-03-17 18:11:42.588 -07 000000501 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:11:42.588 -07 000000501 INF: Z Motor: Piezo is near 50.7 V (nominally 0 to 100 V), expect near 59.0 V, since DAC is at 5.900 V. Piezo Error = -8.3 V.
17-03-17 18:11:42.588 -07 000000501 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.0 um, Read 10 ADC samples: Avg = 36839 (-176.1 uncal um), Error = 0.9 uncal um, Median = 36840 (-176.1 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 36831 (-176.0 uncal um), Max = 36846 (-176.1 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 18:11:42.588 -07 000000501 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36839, posNoise = 7, negNoise = 8
17-03-17 18:11:42.588 -07 000000501 INF: Z Motor: After move to -0.176988, error = 0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:11:42.588 -07 000000501 INF: Z Motor: Settle wait time = 1436 ms, measure time = 106 ms (allowed 150 ms), total time = 1542 ms
17-03-17 18:11:42.588 -07 000000501 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-17 18:11:42.638 -07 000000501 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1595 ms
17-03-17 18:11:42.638 -07 000000501 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:11:42.638 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:11:42.638 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:11:42.638 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:11:42.638 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:11:42.638 -07 000000459 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:11:42.638 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:11:42.648 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 4 ms.
17-03-17 18:11:42.648 -07 000000459 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:11:42.648 -07 000000459 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:11:42.648 -07 000000459 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:11:42.658 -07 000000459 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 9 ms.
17-03-17 18:11:42.658 -07 000000459 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-17 18:11:42.668 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:11:42.718 -07 000000501 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:11:42.918 -07 000000459 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:11:42.918 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:11:42.918 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:11:42.918 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2432798312, 0x0, 559484976) start.
17-03-17 18:11:42.948 -07 000000459 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:11:42.958 -07 000000501 INF: FPGA: Recv CAMSNAP
17-03-17 18:11:42.958 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 280 ms to get response, and 287 ms overall
17-03-17 18:11:43.028 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2432798312, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 18:11:43.028 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:11:43.028 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 18:11:43.028 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 18:11:43.058 -07 000000459 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:11:43.058 -07 000000618 INF: Autofocus start
17-03-17 18:11:43.058 -07 000000618 INF: MeasureProfile start
17-03-17 18:11:43.068 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:11:43.068 -07 000000459 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 18:11:43.068 -07 000000459 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:11:43.068 -07 000000618 INF: MeasureProfile done
17-03-17 18:11:43.068 -07 000000618 INF: X=16  Z correction [um]=0.01042744
17-03-17 18:11:43.068 -07 000000618 INF: Autofocus finished
17-03-17 18:11:43.268 -07 000000501 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:11:43.268 -07 000000459 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 202 ms overall
17-03-17 18:11:43.278 -07 000000610 INF: ------------ Scan Snapping tile 7 at Y-position 64.87939453125, Z-position -0.176984903101467. ----------
17-03-17 18:11:43.278 -07 000000610 INF: Cycle	10	Tile	7	Exposure Settings		A	392	G	188	T	188	C	392
17-03-17 18:11:43.278 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37177, sync = True, waitForSettling = True)
17-03-17 18:11:43.278 -07 000000610 INF: Z Motor: Moving to -0.170185 mm, started at -0.176985 mm, distance = 6.80 um
17-03-17 18:11:43.278 -07 000000610 INF: FPGA: Xmit ZDACW 37177\n [Z Motor]
17-03-17 18:11:43.278 -07 000000618 INF: FPGA: Recv ZDACW
17-03-17 18:11:43.288 -07 000000610 INF: FPGA: 'ZDACW 37177' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:11:43.288 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:11:43.288 -07 000000501 INF: FPGA: Recv ZDACR 37177
17-03-17 18:11:43.298 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:11:43.298 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:11:43.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:11:43.448 -07 000000459 INF: FPGA: Recv ZSGSRD 35781
17-03-17 18:11:43.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:11:43.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:11:43.458 -07 000000459 INF: FPGA: Recv ZSGSRD 35783
17-03-17 18:11:43.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:11:43.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:11:43.468 -07 000000501 INF: FPGA: Recv ZSGSRD 35785
17-03-17 18:11:43.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:11:43.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:11:43.478 -07 000000501 INF: FPGA: Recv ZSGSRD 35780
17-03-17 18:11:43.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:11:43.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:11:43.488 -07 000000501 INF: FPGA: Recv ZSGSRD 35782
17-03-17 18:11:43.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:11:43.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:11:43.498 -07 000000618 INF: FPGA: Recv ZSGSRD 35783
17-03-17 18:11:43.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:11:43.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:11:43.508 -07 000000382 INF: FPGA: Recv ZSGSRD 35779
17-03-17 18:11:43.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:11:43.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:11:43.518 -07 000000618 INF: FPGA: Recv ZSGSRD 35780
17-03-17 18:11:43.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:11:43.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:11:43.528 -07 000000618 INF: FPGA: Recv ZSGSRD 35788
17-03-17 18:11:43.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:11:43.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:11:43.538 -07 000000618 INF: FPGA: Recv ZSGSRD 35779
17-03-17 18:11:43.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:11:43.548 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:11:43.548 -07 000000618 INF: FPGA: Recv ZPIEZORD 31664
17-03-17 18:11:43.558 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:11:43.558 -07 000000610 INF: Z Motor: Piezo is near 47.6 V (nominally 0 to 100 V), expect near 56.7 V, since DAC is at 5.673 V. Piezo Error = -9.1 V.
17-03-17 18:11:43.558 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.2 um, Read 10 ADC samples: Avg = 35782 (-169.3 uncal um), Error = 0.9 uncal um, Median = 35782 (-169.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35779 (-169.3 uncal um), Max = 35788 (-169.4 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 18:11:43.558 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35782, posNoise = 6, negNoise = 3
17-03-17 18:11:43.558 -07 000000610 INF: Z Motor: After move to -0.170185, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:11:43.558 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-17 18:11:43.558 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:11:43.558 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:11:43.558 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:11:43.558 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:11:43.558 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:11:43.558 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:11:43.558 -07 000000459 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:11:43.558 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:11:43.558 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 18:11:43.558 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:11:43.558 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:11:43.558 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:11:43.568 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 18:11:43.568 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:11:43.568 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 18:11:43.568 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:11:43.568 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 18:11:43.568 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 18:11:43.578 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 18:11:43.578 -07 000000459 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 12 ms.
17-03-17 18:11:43.578 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 392 392 188 188 37354 150\n [Camera]
17-03-17 18:11:43.778 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:11:44.168 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 584
17-03-17 18:11:44.168 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 584
17-03-17 18:11:44.168 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:11:44.168 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 584
17-03-17 18:11:44.168 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 584
17-03-17 18:11:44.178 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:11:44.178 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 18:11:44.178 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:11:44.178 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:11:44.178 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 18:11:44.358 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37354 777
17-03-17 18:11:44.508 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP turning grn on 927
17-03-17 18:11:44.548 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 18:11:44.548 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 18:11:44.548 -07 000000433 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:11:44.548 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 375 ms.
17-03-17 18:11:44.548 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 18:11:44.548 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:11:44.558 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 18:11:44.558 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 18:11:44.558 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-17 18:11:44.568 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 18:11:44.698 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1115
17-03-17 18:11:44.698 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1115
17-03-17 18:11:44.698 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:11:44.698 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:11:44.698 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 2468220576, 0x0, 391868352) start.
17-03-17 18:11:44.698 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1115
17-03-17 18:11:44.698 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1115
17-03-17 18:11:44.698 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:11:44.698 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:11:44.698 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2503642840, 0x0, 418435064) start.
17-03-17 18:11:44.888 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP 1307
17-03-17 18:11:44.888 -07 000000608 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:11:44.888 -07 000000610 INF: FPGA: 'CAMDBLSNAP 392 392 188 188 37354 150' command took 2 ms to send, 1307 ms to get response, and 1314 ms overall
17-03-17 18:11:44.888 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 18:11:44.888 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 8 at Y-position 64.87939453125, Z-Position -0.170194510867626. ------
17-03-17 18:11:44.898 -07 000000512 INF: Y Motor: MoveYZ optimized starting. Moving Y to 65.7226 mm, moving Z to -0.17664 mm
17-03-17 18:11:44.898 -07 000000512 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:11:44.898 -07 000000618 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:11:44.898 -07 000000012 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:11:44.898 -07 000000501 INF: Y Motor: Entering MoveAbsStepped (target = 105156 steps, sync = True, waitForSettling = True)
17-03-17 18:11:44.898 -07 000000501 INF: Y Motor: Moving to 65.7226 mm, started at 64.8794 mm, delta = 0.8432 mm
17-03-17 18:11:44.898 -07 000000608 INF: Z Motor: Entering MoveAbsStepped (DAC = 38587, sync = True, waitForSettling = False)
17-03-17 18:11:44.898 -07 000000608 INF: Z Motor: Moving to -0.176640 mm, started at -0.170195 mm, distance = -6.45 um
17-03-17 18:11:44.908 -07 000000618 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:11:44.908 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:11:44.908 -07 000000593 INF: FPGA: Recv YRDPOS 132874
17-03-17 18:11:44.918 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-17 18:11:44.918 -07 000000501 INF: Y Motor: Encoder = 132874 = motor step 103807.8 = 64.8799 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:11:44.918 -07 000000608 INF: FPGA: Xmit ZDACW 38587\n [Z Motor]
17-03-17 18:11:44.918 -07 000000593 INF: FPGA: Recv ZDACW
17-03-17 18:11:44.918 -07 000000501 INF: Y Motor: Last commanded position = 64.8926 mm (103828.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:11:44.918 -07 000000501 INF: Y Motor: Moving 1348 steps-27
17-03-17 18:11:44.928 -07 000000618 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:11:44.928 -07 000000608 INF: FPGA: 'ZDACW 38587' command took 0 ms to send, 0 ms to get response, and 21 ms overall
17-03-17 18:11:44.938 -07 000000501 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:11:44.948 -07 000000608 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:11:44.948 -07 000000459 INF: FPGA: Recv ZDACR 38587
17-03-17 18:11:44.958 -07 000000608 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:11:44.958 -07 000000608 INF: Z Motor: MoveAbsStepped took 52 ms (did NOT wait for settling yet))
17-03-17 18:11:45.078 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 2468220576, 0x0, 391868352) end. Duration was 379 ms.
17-03-17 18:11:45.078 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-17 18:11:45.078 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:11:45.078 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2503642840, 0x0, 418435064) end. Duration was 380 ms.
17-03-17 18:11:45.078 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-17 18:11:45.078 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:11:45.088 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:11:45.088 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-17 18:11:45.088 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 18:11:45.098 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 18:11:45.128 -07 000000480 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:11:45.128 -07 000000618 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 18:11:45.308 -07 000000012 INF: FPGA: Recv YMVTILE
17-03-17 18:11:45.308 -07 000000501 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 394 ms overall
17-03-17 18:11:45.348 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:11:45.348 -07 000000415 INF: FPGA: Recv YRDPOS 134584
17-03-17 18:11:45.358 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:11:45.358 -07 000000501 INF: Y Motor: Encoder = 134584 = motor step 105143.8 = 65.7148 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:11:45.358 -07 000000501 INF: Y Motor: Position error before settling (table move) = -16 encoder counts (-0.008 mm)
17-03-17 18:11:45.358 -07 000000501 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 396 ms, distance = 0.843 mm, average velocity = 2.129 mm/sec
17-03-17 18:11:46.308 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:11:46.308 -07 000000593 INF: FPGA: Recv YRDPOS 134584
17-03-17 18:11:46.318 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:11:46.318 -07 000000501 INF: Y Motor: Encoder = 134584 = motor step 105143.8 = 65.7148 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:11:46.338 -07 000000501 INF: Y Motor: After move to 65.722610, error = -0.007767, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:11:46.338 -07 000000501 INF: Y Motor: Position error after settling (table move) = -16 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:11:46.338 -07 000000501 INF: Y Motor: Moved to 65.7148 after 1433 ms (table move)
17-03-17 18:11:46.338 -07 000000512 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176640 mm (DAC = 38587)
17-03-17 18:11:46.338 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:11:46.338 -07 000000433 INF: FPGA: Recv ZSGSRD 36778
17-03-17 18:11:46.348 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:11:46.348 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:11:46.348 -07 000000433 INF: FPGA: Recv ZSGSRD 36776
17-03-17 18:11:46.358 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:11:46.358 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:11:46.358 -07 000000433 INF: FPGA: Recv ZSGSRD 36782
17-03-17 18:11:46.368 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:11:46.368 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:11:46.368 -07 000000433 INF: FPGA: Recv ZSGSRD 36795
17-03-17 18:11:46.378 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:11:46.378 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:11:46.378 -07 000000433 INF: FPGA: Recv ZSGSRD 36784
17-03-17 18:11:46.388 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:11:46.388 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:11:46.388 -07 000000433 INF: FPGA: Recv ZSGSRD 36789
17-03-17 18:11:46.398 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:11:46.398 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:11:46.398 -07 000000433 INF: FPGA: Recv ZSGSRD 36785
17-03-17 18:11:46.408 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:11:46.408 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:11:46.408 -07 000000433 INF: FPGA: Recv ZSGSRD 36780
17-03-17 18:11:46.418 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:11:46.418 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:11:46.418 -07 000000433 INF: FPGA: Recv ZSGSRD 36779
17-03-17 18:11:46.428 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:11:46.428 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:11:46.428 -07 000000433 INF: FPGA: Recv ZSGSRD 36781
17-03-17 18:11:46.438 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:11:46.438 -07 000000512 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:11:46.438 -07 000000433 INF: FPGA: Recv ZPIEZORD 32983
17-03-17 18:11:46.448 -07 000000512 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:11:46.448 -07 000000512 INF: Z Motor: Piezo is near 50.5 V (nominally 0 to 100 V), expect near 58.9 V, since DAC is at 5.888 V. Piezo Error = -8.4 V.
17-03-17 18:11:46.448 -07 000000512 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.6 um, Read 10 ADC samples: Avg = 36783 (-175.7 uncal um), Error = 0.9 uncal um, Median = 36782 (-175.7 uncal um), StdDev = 6 (0.0 uncal um), Range = 19 (0.1 uncal um), Min = 36776 (-175.7 uncal um), Max = 36795 (-175.8 uncal um), Pos Noise = 12 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 18:11:46.448 -07 000000512 INF: Z Motor: ADC noise = 12, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36783, posNoise = 12, negNoise = 7
17-03-17 18:11:46.448 -07 000000512 INF: Z Motor: After move to -0.176640, error = 0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:11:46.448 -07 000000512 INF: Z Motor: Settle wait time = 1437 ms, measure time = 105 ms (allowed 150 ms), total time = 1542 ms
17-03-17 18:11:46.448 -07 000000512 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 18:11:46.498 -07 000000512 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1597 ms
17-03-17 18:11:46.498 -07 000000512 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:11:46.498 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:11:46.498 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:11:46.498 -07 000000012 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:11:46.508 -07 000000012 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:11:46.508 -07 000000012 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:11:46.508 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:11:46.508 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:11:46.508 -07 000000012 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:11:46.508 -07 000000012 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:11:46.508 -07 000000012 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:11:46.528 -07 000000012 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 16 ms.
17-03-17 18:11:46.528 -07 000000012 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 20 ms.
17-03-17 18:11:46.528 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:11:46.568 -07 000000012 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:11:46.568 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 9. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=90, R2=99, Total=189. Warn if over 250 bubbles per interval.
17-03-17 18:11:46.578 -07 000000012 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:11:46.778 -07 000000012 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:11:46.778 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:11:46.778 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:11:46.778 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2539065104, 0x0, 559484976) start.
17-03-17 18:11:46.818 -07 000000012 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:11:46.818 -07 000000012 INF: FPGA: Recv CAMSNAP
17-03-17 18:11:46.818 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 281 ms to get response, and 285 ms overall
17-03-17 18:11:46.908 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2539065104, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 18:11:46.908 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:11:46.908 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 18:11:46.908 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 18:11:46.918 -07 000000012 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:11:47.748 -07 000000627 INF: Autofocus start
17-03-17 18:11:47.778 -07 000000627 INF: MeasureProfile start
17-03-17 18:11:47.788 -07 000000627 INF: MeasureProfile done
17-03-17 18:11:47.788 -07 000000627 INF: X=16  Z correction [um]=0.01042744
17-03-17 18:11:47.788 -07 000000627 INF: Autofocus finished
17-03-17 18:11:47.788 -07 000000627 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:11:47.788 -07 000000012 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 864 ms to get response, and 868 ms overall
17-03-17 18:11:47.788 -07 000000012 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:11:47.988 -07 000000627 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:11:47.988 -07 000000012 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 197 ms to get response, and 202 ms overall
17-03-17 18:11:47.998 -07 000000610 INF: ------------ Scan Snapping tile 8 at Y-position 65.71484375, Z-position -0.176625147221528. ----------
17-03-17 18:11:47.998 -07 000000610 INF: Cycle	10	Tile	8	Exposure Settings		A	392	G	188	T	188	C	392
17-03-17 18:11:47.998 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37102, sync = True, waitForSettling = True)
17-03-17 18:11:47.998 -07 000000610 INF: Z Motor: Moving to -0.169842 mm, started at -0.176625 mm, distance = 6.78 um
17-03-17 18:11:47.998 -07 000000610 INF: FPGA: Xmit ZDACW 37102\n [Z Motor]
17-03-17 18:11:47.998 -07 000000627 INF: FPGA: Recv ZDACW
17-03-17 18:11:48.008 -07 000000610 INF: FPGA: 'ZDACW 37102' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 18:11:48.008 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:11:48.008 -07 000000012 INF: FPGA: Recv ZDACR 37102
17-03-17 18:11:48.018 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:11:48.018 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:11:48.098 -07 000000012 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 10, FrontChillerTemperature: 4.015368,
17-03-17 18:11:48.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:11:48.168 -07 000000486 INF: FPGA: Recv ZSGSRD 35727
17-03-17 18:11:48.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:11:48.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:11:48.178 -07 000000502 INF: FPGA: Recv ZSGSRD 35730
17-03-17 18:11:48.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:11:48.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:11:48.188 -07 000000627 INF: FPGA: Recv ZSGSRD 35725
17-03-17 18:11:48.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:11:48.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:11:48.198 -07 000000502 INF: FPGA: Recv ZSGSRD 35725
17-03-17 18:11:48.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:11:48.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:11:48.208 -07 000000486 INF: FPGA: Recv ZSGSRD 35725
17-03-17 18:11:48.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:11:48.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:11:48.218 -07 000000502 INF: FPGA: Recv ZSGSRD 35734
17-03-17 18:11:48.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:11:48.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:11:48.228 -07 000000486 INF: FPGA: Recv ZSGSRD 35732
17-03-17 18:11:48.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:11:48.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:11:48.238 -07 000000627 INF: FPGA: Recv ZSGSRD 35729
17-03-17 18:11:48.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:11:48.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:11:48.248 -07 000000012 INF: FPGA: Recv ZSGSRD 35729
17-03-17 18:11:48.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:11:48.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:11:48.258 -07 000000627 INF: FPGA: Recv ZSGSRD 35729
17-03-17 18:11:48.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:11:48.268 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:11:48.268 -07 000000486 INF: FPGA: Recv ZPIEZORD 31562
17-03-17 18:11:48.278 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:11:48.278 -07 000000610 INF: Z Motor: Piezo is near 47.4 V (nominally 0 to 100 V), expect near 56.6 V, since DAC is at 5.661 V. Piezo Error = -9.2 V.
17-03-17 18:11:48.278 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.8 um, Read 10 ADC samples: Avg = 35728 (-169.0 uncal um), Error = 0.9 uncal um, Median = 35729 (-169.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35725 (-169.0 uncal um), Max = 35734 (-169.0 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 18:11:48.278 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35728, posNoise = 6, negNoise = 3
17-03-17 18:11:48.278 -07 000000610 INF: Z Motor: After move to -0.169842, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:11:48.278 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-17 18:11:48.278 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:11:48.278 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:11:48.278 -07 000000627 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:11:48.278 -07 000000012 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:11:48.278 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:11:48.278 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:11:48.278 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:11:48.278 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:11:48.278 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:11:48.278 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:11:48.278 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:11:48.278 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:11:48.288 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 18:11:48.288 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:11:48.288 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 18:11:48.288 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:11:48.298 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 18:11:48.298 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 18:11:48.298 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 18:11:48.298 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 18:11:48.308 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 392 392 188 188 37278 150\n [Camera]
17-03-17 18:11:48.508 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:11:48.898 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 584
17-03-17 18:11:48.898 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 584
17-03-17 18:11:48.898 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:11:48.898 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:11:48.898 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 1056706608, 0x0, 391868352) start.
17-03-17 18:11:48.898 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 584
17-03-17 18:11:48.898 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 584
17-03-17 18:11:48.898 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:11:48.898 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:11:48.898 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 1092128872, 0x0, 418435064) start.
17-03-17 18:11:49.088 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37278 777
17-03-17 18:11:49.238 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP turning grn on 927
17-03-17 18:11:49.278 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 1092128872, 0x0, 418435064) end. Duration was 380 ms.
17-03-17 18:11:49.278 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 381 ms.
17-03-17 18:11:49.278 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:11:49.288 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 1056706608, 0x0, 391868352) end. Duration was 386 ms.
17-03-17 18:11:49.288 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 18:11:49.288 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:11:49.288 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:11:49.288 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:11:49.288 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-17 18:11:49.288 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 18:11:49.428 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1115
17-03-17 18:11:49.428 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1115
17-03-17 18:11:49.428 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:11:49.548 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1115
17-03-17 18:11:49.548 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1115
17-03-17 18:11:49.548 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:11:49.548 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:11:49.548 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 1127551136, 0x0, 391868352) start.
17-03-17 18:11:49.558 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:11:49.558 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 1056706608, 0x0, 418435064) start.
17-03-17 18:11:49.618 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP 1307
17-03-17 18:11:49.618 -07 000000512 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:11:49.618 -07 000000610 INF: FPGA: 'CAMDBLSNAP 392 392 188 188 37278 150' command took 2 ms to send, 1305 ms to get response, and 1314 ms overall
17-03-17 18:11:49.618 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 18:11:49.618 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 9 at Y-position 65.71484375, Z-Position -0.16984760341197. ------
17-03-17 18:11:49.618 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:11:49.618 -07 000000502 INF: Y Motor: MoveYZ optimized starting. Moving Y to 66.5526 mm, moving Z to -0.17623 mm
17-03-17 18:11:49.628 -07 000000502 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:11:49.628 -07 000000486 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:11:49.628 -07 000000593 INF: Y Motor: Entering MoveAbsStepped (target = 106484 steps, sync = True, waitForSettling = True)
17-03-17 18:11:49.628 -07 000000593 INF: Y Motor: Moving to 66.5526 mm, started at 65.7148 mm, delta = 0.8378 mm
17-03-17 18:11:49.628 -07 000000512 INF: Z Motor: Entering MoveAbsStepped (DAC = 38498, sync = True, waitForSettling = False)
17-03-17 18:11:49.628 -07 000000512 INF: Z Motor: Moving to -0.176233 mm, started at -0.169848 mm, distance = -6.38 um
17-03-17 18:11:49.638 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:11:49.638 -07 000000593 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:11:49.638 -07 000000382 INF: FPGA: Recv YRDPOS 134585
17-03-17 18:11:49.648 -07 000000593 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-17 18:11:49.648 -07 000000593 INF: Y Motor: Encoder = 134585 = motor step 105144.5 = 65.7153 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:11:49.648 -07 000000512 INF: FPGA: Xmit ZDACW 38498\n [Z Motor]
17-03-17 18:11:49.648 -07 000000486 INF: FPGA: Recv ZDACW
17-03-17 18:11:49.648 -07 000000593 INF: Y Motor: Last commanded position = 65.7226 mm (105156.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:11:49.648 -07 000000593 INF: Y Motor: Moving 1340 steps-16
17-03-17 18:11:49.658 -07 000000501 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:11:49.658 -07 000000512 INF: FPGA: 'ZDACW 38498' command took 3 ms to send, 0 ms to get response, and 26 ms overall
17-03-17 18:11:49.668 -07 000000593 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:11:49.678 -07 000000512 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:11:49.678 -07 000000486 INF: FPGA: Recv ZDACR 38498
17-03-17 18:11:49.688 -07 000000512 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:11:49.688 -07 000000512 INF: Z Motor: MoveAbsStepped took 56 ms (did NOT wait for settling yet))
17-03-17 18:11:49.858 -07 000000512 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:11:49.858 -07 000000501 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 18:11:49.948 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 1056706608, 0x0, 418435064) end. Duration was 393 ms.
17-03-17 18:11:49.948 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 18:11:49.948 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:11:49.948 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 1127551136, 0x0, 391868352) end. Duration was 400 ms.
17-03-17 18:11:49.948 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 18:11:49.948 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:11:49.958 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:11:49.958 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:11:49.958 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 528 ms.
17-03-17 18:11:49.958 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-17 18:11:50.038 -07 000000486 INF: FPGA: Recv YMVTILE
17-03-17 18:11:50.038 -07 000000593 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 391 ms overall
17-03-17 18:11:50.078 -07 000000593 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:11:50.078 -07 000000486 INF: FPGA: Recv YRDPOS 136273
17-03-17 18:11:50.088 -07 000000593 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:11:50.088 -07 000000593 INF: Y Motor: Encoder = 136273 = motor step 106463.3 = 66.5396 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:11:50.088 -07 000000593 INF: Y Motor: Position error before settling (table move) = -27 encoder counts (-0.013 mm)
17-03-17 18:11:50.088 -07 000000593 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 391 ms, distance = 0.838 mm, average velocity = 2.143 mm/sec
17-03-17 18:11:51.038 -07 000000593 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:11:51.038 -07 000000501 INF: FPGA: Recv YRDPOS 136273
17-03-17 18:11:51.048 -07 000000593 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:11:51.048 -07 000000593 INF: Y Motor: Encoder = 136273 = motor step 106463.3 = 66.5396 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:11:51.058 -07 000000593 INF: Y Motor: After move to 66.552605, error = -0.013054, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:11:51.058 -07 000000593 INF: Y Motor: Position error after settling (table move) = -27 encoder counts (-0.013 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:11:51.068 -07 000000593 INF: Y Motor: Moved to 66.5396 after 1436 ms (table move)
17-03-17 18:11:51.068 -07 000000502 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176233 mm (DAC = 38498)
17-03-17 18:11:51.068 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:11:51.068 -07 000000486 INF: FPGA: Recv ZSGSRD 36719
17-03-17 18:11:51.078 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 18:11:51.078 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:11:51.078 -07 000000512 INF: FPGA: Recv ZSGSRD 36716
17-03-17 18:11:51.088 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:11:51.088 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:11:51.088 -07 000000486 INF: FPGA: Recv ZSGSRD 36725
17-03-17 18:11:51.098 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:11:51.098 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:11:51.098 -07 000000382 INF: FPGA: Recv ZSGSRD 36725
17-03-17 18:11:51.108 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:11:51.108 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:11:51.108 -07 000000012 INF: FPGA: Recv ZSGSRD 36728
17-03-17 18:11:51.118 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:11:51.118 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:11:51.118 -07 000000541 INF: FPGA: Recv ZSGSRD 36725
17-03-17 18:11:51.128 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:11:51.128 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:11:51.128 -07 000000012 INF: FPGA: Recv ZSGSRD 36732
17-03-17 18:11:51.138 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:11:51.138 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:11:51.138 -07 000000541 INF: FPGA: Recv ZSGSRD 36719
17-03-17 18:11:51.148 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:11:51.148 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:11:51.148 -07 000000501 INF: FPGA: Recv ZSGSRD 36716
17-03-17 18:11:51.158 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:11:51.158 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:11:51.158 -07 000000541 INF: FPGA: Recv ZSGSRD 36723
17-03-17 18:11:51.168 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:11:51.168 -07 000000502 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:11:51.168 -07 000000593 INF: FPGA: Recv ZPIEZORD 32896
17-03-17 18:11:51.178 -07 000000502 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:11:51.178 -07 000000502 INF: Z Motor: Piezo is near 50.3 V (nominally 0 to 100 V), expect near 58.7 V, since DAC is at 5.874 V. Piezo Error = -8.5 V.
17-03-17 18:11:51.178 -07 000000502 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.2 um, Read 10 ADC samples: Avg = 36723 (-175.3 uncal um), Error = 0.9 uncal um, Median = 36724 (-175.4 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 36716 (-175.3 uncal um), Max = 36732 (-175.4 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 18:11:51.178 -07 000000502 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36723, posNoise = 9, negNoise = 7
17-03-17 18:11:51.178 -07 000000502 INF: Z Motor: After move to -0.176233, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:11:51.178 -07 000000502 INF: Z Motor: Settle wait time = 1440 ms, measure time = 107 ms (allowed 150 ms), total time = 1547 ms
17-03-17 18:11:51.178 -07 000000502 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-17 18:11:51.228 -07 000000502 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1600 ms
17-03-17 18:11:51.228 -07 000000502 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:11:51.228 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:11:51.228 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:11:51.228 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:11:51.228 -07 000000486 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:11:51.228 -07 000000593 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:11:51.228 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:11:51.228 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:11:51.228 -07 000000593 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:11:51.238 -07 000000593 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:11:51.238 -07 000000593 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:11:51.248 -07 000000593 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 9 ms.
17-03-17 18:11:51.248 -07 000000593 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 14 ms.
17-03-17 18:11:51.248 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:11:51.298 -07 000000486 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:11:51.488 -07 000000502 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:11:51.488 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:11:51.498 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:11:51.498 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1092128872, 0x0, 559484976) start.
17-03-17 18:11:51.528 -07 000000618 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:11:51.528 -07 000000512 INF: FPGA: Recv CAMSNAP
17-03-17 18:11:51.528 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 279 ms to get response, and 285 ms overall
17-03-17 18:11:51.568 -07 000000486 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:11:51.618 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1092128872, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 18:11:51.618 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:11:51.618 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 18:11:51.618 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 18:11:51.628 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 9. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=90, R2=99, Total=189. Warn if over 250 bubbles per interval.
17-03-17 18:11:51.638 -07 000000541 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:11:51.638 -07 000000512 INF: Autofocus start
17-03-17 18:11:51.638 -07 000000512 INF: MeasureProfile start
17-03-17 18:11:51.638 -07 000000593 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:11:51.648 -07 000000541 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:11:51.648 -07 000000541 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:11:51.648 -07 000000512 INF: MeasureProfile done
17-03-17 18:11:51.648 -07 000000512 INF: X=32  Z correction [um]=0.09220707
17-03-17 18:11:51.648 -07 000000512 INF: Autofocus finished
17-03-17 18:11:51.848 -07 000000618 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:11:51.848 -07 000000541 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:11:51.848 -07 000000610 INF: ------------ Scan Snapping tile 9 at Y-position 66.53955078125, Z-position -0.176239694493023. ----------
17-03-17 18:11:51.848 -07 000000610 INF: Cycle	10	Tile	9	Exposure Settings		A	392	G	188	T	188	C	392
17-03-17 18:11:51.858 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37031, sync = True, waitForSettling = True)
17-03-17 18:11:51.858 -07 000000610 INF: Z Motor: Moving to -0.169517 mm, started at -0.176240 mm, distance = 6.72 um
17-03-17 18:11:51.858 -07 000000610 INF: FPGA: Xmit ZDACW 37031\n [Z Motor]
17-03-17 18:11:51.858 -07 000000501 INF: FPGA: Recv ZDACW
17-03-17 18:11:51.868 -07 000000610 INF: FPGA: 'ZDACW 37031' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:11:51.868 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:11:51.868 -07 000000512 INF: FPGA: Recv ZDACR 37031
17-03-17 18:11:51.878 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:11:51.878 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:11:52.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:11:52.028 -07 000000593 INF: FPGA: Recv ZSGSRD 35679
17-03-17 18:11:52.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:11:52.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:11:52.038 -07 000000512 INF: FPGA: Recv ZSGSRD 35675
17-03-17 18:11:52.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:11:52.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:11:52.048 -07 000000593 INF: FPGA: Recv ZSGSRD 35681
17-03-17 18:11:52.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:11:52.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:11:52.058 -07 000000501 INF: FPGA: Recv ZSGSRD 35678
17-03-17 18:11:52.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:11:52.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:11:52.068 -07 000000486 INF: FPGA: Recv ZSGSRD 35675
17-03-17 18:11:52.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:11:52.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:11:52.078 -07 000000501 INF: FPGA: Recv ZSGSRD 35680
17-03-17 18:11:52.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:11:52.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:11:52.088 -07 000000618 INF: FPGA: Recv ZSGSRD 35677
17-03-17 18:11:52.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:11:52.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:11:52.098 -07 000000593 INF: FPGA: Recv ZSGSRD 35678
17-03-17 18:11:52.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:11:52.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:11:52.108 -07 000000486 INF: FPGA: Recv ZSGSRD 35672
17-03-17 18:11:52.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:11:52.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:11:52.118 -07 000000502 INF: FPGA: Recv ZSGSRD 35680
17-03-17 18:11:52.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:11:52.128 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:11:52.128 -07 000000593 INF: FPGA: Recv ZPIEZORD 31510
17-03-17 18:11:52.138 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:11:52.138 -07 000000610 INF: Z Motor: Piezo is near 47.3 V (nominally 0 to 100 V), expect near 56.5 V, since DAC is at 5.651 V. Piezo Error = -9.2 V.
17-03-17 18:11:52.138 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.5 um, Read 10 ADC samples: Avg = 35678 (-168.7 uncal um), Error = 0.9 uncal um, Median = 35678 (-168.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35672 (-168.6 uncal um), Max = 35681 (-168.7 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 18:11:52.138 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35678, posNoise = 3, negNoise = 6
17-03-17 18:11:52.138 -07 000000610 INF: Z Motor: After move to -0.169517, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:11:52.138 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 18:11:52.138 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:11:52.138 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:11:52.138 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:11:52.138 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:11:52.138 -07 000000486 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:11:52.138 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:11:52.138 -07 000000012 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:11:52.138 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:11:52.138 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:11:52.138 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:11:52.138 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:11:52.138 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:11:52.148 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 18:11:52.148 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:11:52.148 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 18:11:52.148 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:11:52.158 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 18:11:52.158 -07 000000012 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 18:11:52.158 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 18:11:52.158 -07 000000486 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 18:11:52.168 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 392 392 188 188 37208 150\n [Camera]
17-03-17 18:11:52.368 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:11:52.758 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 584
17-03-17 18:11:52.758 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 584
17-03-17 18:11:52.758 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:11:52.758 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:11:52.758 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 18:11:52.758 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 584
17-03-17 18:11:52.758 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 584
17-03-17 18:11:52.758 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:11:52.758 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:11:52.758 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2468220576, 0x0, 418435064) start.
17-03-17 18:11:52.948 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37208 777
17-03-17 18:11:53.098 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP turning grn on 927
17-03-17 18:11:53.238 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 483 ms.
17-03-17 18:11:53.238 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 483 ms.
17-03-17 18:11:53.238 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:11:53.238 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2468220576, 0x0, 418435064) end. Duration was 480 ms.
17-03-17 18:11:53.238 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 482 ms.
17-03-17 18:11:53.238 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:11:53.248 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 18:11:53.248 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 489 ms.
17-03-17 18:11:53.248 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 18:11:53.258 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 494 ms.
17-03-17 18:11:53.288 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1115
17-03-17 18:11:53.288 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1115
17-03-17 18:11:53.288 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:11:53.288 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1115
17-03-17 18:11:53.288 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1115
17-03-17 18:11:53.288 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:11:53.298 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:11:53.298 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-17 18:11:53.298 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:11:53.298 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1056706608, 0x0, 418435064) start.
17-03-17 18:11:53.478 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP 1307
17-03-17 18:11:53.478 -07 000000618 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:11:53.478 -07 000000610 INF: FPGA: 'CAMDBLSNAP 392 392 188 188 37208 150' command took 2 ms to send, 1304 ms to get response, and 1314 ms overall
17-03-17 18:11:53.478 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 18:11:53.478 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 10 at Y-position 66.53955078125, Z-Position -0.169526392804882. ------
17-03-17 18:11:53.478 -07 000000541 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:11:53.478 -07 000000593 INF: Y Motor: MoveYZ optimized starting. Moving Y to 67.3826 mm, moving Z to -0.17637 mm
17-03-17 18:11:53.478 -07 000000593 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:11:53.488 -07 000000415 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:11:53.488 -07 000000541 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 4 ms to get response, and 5 ms overall
17-03-17 18:11:53.488 -07 000000618 INF: Z Motor: Entering MoveAbsStepped (DAC = 38528, sync = True, waitForSettling = False)
17-03-17 18:11:53.488 -07 000000618 INF: Z Motor: Moving to -0.176370 mm, started at -0.169526 mm, distance = -6.84 um
17-03-17 18:11:53.488 -07 000000541 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:11:53.488 -07 000000501 INF: Y Motor: Entering MoveAbsStepped (target = 107812 steps, sync = True, waitForSettling = True)
17-03-17 18:11:53.488 -07 000000501 INF: Y Motor: Moving to 67.3826 mm, started at 66.5396 mm, delta = 0.8431 mm
17-03-17 18:11:53.498 -07 000000618 INF: FPGA: Xmit ZDACW 38528\n [Z Motor]
17-03-17 18:11:53.498 -07 000000608 INF: FPGA: Recv ZDACW
17-03-17 18:11:53.508 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:11:53.508 -07 000000618 INF: FPGA: 'ZDACW 38528' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-17 18:11:53.508 -07 000000415 INF: FPGA: Recv YRDPOS 136274
17-03-17 18:11:53.518 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-17 18:11:53.518 -07 000000501 INF: Y Motor: Encoder = 136274 = motor step 106464.1 = 66.5400 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:11:53.518 -07 000000501 INF: Y Motor: Last commanded position = 66.5526 mm (106484.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:11:53.518 -07 000000501 INF: Y Motor: Moving 1348 steps-27
17-03-17 18:11:53.528 -07 000000618 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:11:53.528 -07 000000415 INF: FPGA: Recv ZDACR 38528
17-03-17 18:11:53.538 -07 000000501 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:11:53.538 -07 000000618 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:11:53.538 -07 000000618 INF: Z Motor: MoveAbsStepped took 45 ms (did NOT wait for settling yet))
17-03-17 18:11:53.558 -07 000000486 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 10, FrontChillerTemperature: 4.005817,
17-03-17 18:11:53.678 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1056706608, 0x0, 418435064) end. Duration was 386 ms.
17-03-17 18:11:53.678 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-17 18:11:53.678 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:11:53.688 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:11:53.688 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 393 ms.
17-03-17 18:11:53.688 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-17 18:11:53.688 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:11:53.688 -07 000000433 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:11:53.688 -07 000000541 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 197 ms to get response, and 203 ms overall
17-03-17 18:11:53.688 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:11:53.688 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-17 18:11:53.698 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 405 ms.
17-03-17 18:11:53.908 -07 000000627 INF: FPGA: Recv YMVTILE
17-03-17 18:11:53.908 -07 000000501 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 394 ms overall
17-03-17 18:11:53.948 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:11:53.948 -07 000000382 INF: FPGA: Recv YRDPOS 137979
17-03-17 18:11:53.958 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:11:53.958 -07 000000501 INF: Y Motor: Encoder = 137979 = motor step 107796.1 = 67.3726 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:11:53.958 -07 000000501 INF: Y Motor: Position error before settling (table move) = -21 encoder counts (-0.010 mm)
17-03-17 18:11:53.958 -07 000000501 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.843 mm, average velocity = 2.140 mm/sec
17-03-17 18:11:54.908 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:11:54.908 -07 000000382 INF: FPGA: Recv YRDPOS 137979
17-03-17 18:11:54.918 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:11:54.918 -07 000000501 INF: Y Motor: Encoder = 137979 = motor step 107796.1 = 67.3726 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:11:54.938 -07 000000501 INF: Y Motor: After move to 67.382607, error = -0.010048, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:11:54.938 -07 000000501 INF: Y Motor: Position error after settling (table move) = -21 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:11:54.938 -07 000000501 INF: Y Motor: Moved to 67.3726 after 1445 ms (table move)
17-03-17 18:11:54.938 -07 000000593 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176370 mm (DAC = 38528)
17-03-17 18:11:54.938 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:11:54.938 -07 000000502 INF: FPGA: Recv ZSGSRD 36741
17-03-17 18:11:54.948 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 18:11:54.948 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:11:54.948 -07 000000012 INF: FPGA: Recv ZSGSRD 36735
17-03-17 18:11:54.958 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:11:54.958 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:11:54.958 -07 000000459 INF: FPGA: Recv ZSGSRD 36741
17-03-17 18:11:54.968 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:11:54.968 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:11:54.968 -07 000000382 INF: FPGA: Recv ZSGSRD 36736
17-03-17 18:11:54.978 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:11:54.978 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:11:54.978 -07 000000502 INF: FPGA: Recv ZSGSRD 36746
17-03-17 18:11:54.988 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:11:54.988 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:11:54.988 -07 000000012 INF: FPGA: Recv ZSGSRD 36744
17-03-17 18:11:54.998 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:11:54.998 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:11:54.998 -07 000000627 INF: FPGA: Recv ZSGSRD 36751
17-03-17 18:11:55.008 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:11:55.008 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:11:55.008 -07 000000551 INF: FPGA: Recv ZSGSRD 36744
17-03-17 18:11:55.018 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:11:55.018 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:11:55.018 -07 000000608 INF: FPGA: Recv ZSGSRD 36740
17-03-17 18:11:55.028 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:11:55.028 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:11:55.028 -07 000000502 INF: FPGA: Recv ZSGSRD 36737
17-03-17 18:11:55.038 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:11:55.038 -07 000000593 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:11:55.038 -07 000000541 INF: FPGA: Recv ZPIEZORD 32954
17-03-17 18:11:55.048 -07 000000593 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:11:55.048 -07 000000593 INF: Z Motor: Piezo is near 50.4 V (nominally 0 to 100 V), expect near 58.8 V, since DAC is at 5.879 V. Piezo Error = -8.4 V.
17-03-17 18:11:55.048 -07 000000593 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.4 um, Read 10 ADC samples: Avg = 36742 (-175.5 uncal um), Error = 0.9 uncal um, Median = 36741 (-175.5 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 36735 (-175.4 uncal um), Max = 36751 (-175.5 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 18:11:55.048 -07 000000593 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36742, posNoise = 9, negNoise = 7
17-03-17 18:11:55.048 -07 000000593 INF: Z Motor: After move to -0.176370, error = 0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:11:55.048 -07 000000593 INF: Z Motor: Settle wait time = 1449 ms, measure time = 106 ms (allowed 150 ms), total time = 1555 ms
17-03-17 18:11:55.048 -07 000000593 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-17 18:11:55.098 -07 000000593 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1610 ms
17-03-17 18:11:55.098 -07 000000593 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:11:55.098 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:11:55.098 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:11:55.098 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:11:55.098 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:11:55.098 -07 000000512 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:11:55.098 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:11:55.108 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:11:55.108 -07 000000512 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:11:55.108 -07 000000512 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 18:11:55.108 -07 000000512 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:11:55.118 -07 000000512 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-17 18:11:55.118 -07 000000512 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms.
17-03-17 18:11:55.118 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:11:55.168 -07 000000618 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:11:55.368 -07 000000480 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:11:55.368 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:11:55.368 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:11:55.368 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1092128872, 0x0, 559484976) start.
17-03-17 18:11:55.408 -07 000000501 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:11:55.408 -07 000000541 INF: FPGA: Recv CAMSNAP
17-03-17 18:11:55.408 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 274 ms to get response, and 285 ms overall
17-03-17 18:11:55.498 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1092128872, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 18:11:55.498 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:11:55.498 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 18:11:55.498 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 18:11:55.508 -07 000000480 INF: Autofocus start
17-03-17 18:11:55.508 -07 000000480 INF: MeasureProfile start
17-03-17 18:11:55.508 -07 000000459 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:11:55.508 -07 000000012 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:11:55.518 -07 000000459 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:11:55.518 -07 000000459 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:11:55.518 -07 000000480 INF: MeasureProfile done
17-03-17 18:11:55.518 -07 000000480 INF: X=-16  Z correction [um]=-0.1496812
17-03-17 18:11:55.518 -07 000000480 INF: Autofocus finished
17-03-17 18:11:55.718 -07 000000551 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:11:55.718 -07 000000459 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:11:55.718 -07 000000610 INF: ------------ Scan Snapping tile 10 at Y-position 67.37255859375, Z-position -0.176361754523716. ----------
17-03-17 18:11:55.718 -07 000000610 INF: Cycle	10	Tile	10	Exposure Settings		A	392	G	188	T	188	C	392
17-03-17 18:11:55.728 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37008, sync = True, waitForSettling = True)
17-03-17 18:11:55.728 -07 000000610 INF: Z Motor: Moving to -0.169412 mm, started at -0.176362 mm, distance = 6.95 um
17-03-17 18:11:55.728 -07 000000610 INF: FPGA: Xmit ZDACW 37008\n [Z Motor]
17-03-17 18:11:55.728 -07 000000480 INF: FPGA: Recv ZDACW
17-03-17 18:11:55.738 -07 000000610 INF: FPGA: 'ZDACW 37008' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:11:55.738 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:11:55.738 -07 000000593 INF: FPGA: Recv ZDACR 37008
17-03-17 18:11:55.748 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:11:55.748 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:11:55.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:11:55.898 -07 000000415 INF: FPGA: Recv ZSGSRD 35665
17-03-17 18:11:55.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:11:55.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:11:55.908 -07 000000608 INF: FPGA: Recv ZSGSRD 35660
17-03-17 18:11:55.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:11:55.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:11:55.918 -07 000000618 INF: FPGA: Recv ZSGSRD 35658
17-03-17 18:11:55.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:11:55.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:11:55.928 -07 000000541 INF: FPGA: Recv ZSGSRD 35664
17-03-17 18:11:55.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:11:55.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:11:55.938 -07 000000501 INF: FPGA: Recv ZSGSRD 35663
17-03-17 18:11:55.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:11:55.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:11:55.948 -07 000000486 INF: FPGA: Recv ZSGSRD 35660
17-03-17 18:11:55.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:11:55.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:11:55.958 -07 000000618 INF: FPGA: Recv ZSGSRD 35654
17-03-17 18:11:55.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:11:55.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:11:55.968 -07 000000541 INF: FPGA: Recv ZSGSRD 35667
17-03-17 18:11:55.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:11:55.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:11:55.978 -07 000000502 INF: FPGA: Recv ZSGSRD 35665
17-03-17 18:11:55.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:11:55.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:11:55.988 -07 000000541 INF: FPGA: Recv ZSGSRD 35659
17-03-17 18:11:55.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:11:55.998 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:11:55.998 -07 000000618 INF: FPGA: Recv ZPIEZORD 31496
17-03-17 18:11:56.008 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:11:56.008 -07 000000610 INF: Z Motor: Piezo is near 47.3 V (nominally 0 to 100 V), expect near 56.5 V, since DAC is at 5.647 V. Piezo Error = -9.2 V.
17-03-17 18:11:56.008 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.4 um, Read 10 ADC samples: Avg = 35662 (-168.6 uncal um), Error = 0.9 uncal um, Median = 35662 (-168.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 35654 (-168.5 uncal um), Max = 35667 (-168.6 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 18:11:56.008 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35662, posNoise = 5, negNoise = 8
17-03-17 18:11:56.008 -07 000000610 INF: Z Motor: After move to -0.169412, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:11:56.008 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 18:11:56.008 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:11:56.008 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:11:56.008 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:11:56.008 -07 000000541 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:11:56.008 -07 000000433 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:11:56.008 -07 000000486 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:11:56.008 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:11:56.008 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:11:56.008 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:11:56.008 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:11:56.008 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:11:56.008 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:11:56.008 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 18:11:56.008 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:11:56.008 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 18:11:56.008 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:11:56.028 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 18:11:56.028 -07 000000433 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 18:11:56.028 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 18:11:56.028 -07 000000486 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 18:11:56.028 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 392 392 188 188 37184 150\n [Camera]
17-03-17 18:11:56.228 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:11:56.568 -07 000000486 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:11:56.568 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 9. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=90, R2=99, Total=189. Warn if over 250 bubbles per interval.
17-03-17 18:11:56.628 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 584
17-03-17 18:11:56.628 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 584
17-03-17 18:11:56.628 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:11:56.628 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:11:56.628 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2503642840, 0x0, 391868352) start.
17-03-17 18:11:56.628 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 584
17-03-17 18:11:56.628 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 584
17-03-17 18:11:56.628 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:11:56.628 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:11:56.628 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 1106804952, 0x0, 418435064) start.
17-03-17 18:11:56.818 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37184 777
17-03-17 18:11:56.968 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP turning grn on 929
17-03-17 18:11:56.998 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 1106804952, 0x0, 418435064) end. Duration was 372 ms.
17-03-17 18:11:56.998 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 373 ms.
17-03-17 18:11:56.998 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:11:57.008 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2503642840, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 18:11:57.008 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 18:11:57.008 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:11:57.008 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:11:57.008 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:11:57.008 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 18:11:57.018 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-17 18:11:57.158 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1115
17-03-17 18:11:57.158 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1115
17-03-17 18:11:57.158 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:11:57.158 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:11:57.158 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 1142227216, 0x0, 391868352) start.
17-03-17 18:11:57.158 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1115
17-03-17 18:11:57.158 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1115
17-03-17 18:11:57.158 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:11:57.158 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:11:57.158 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 1406045800, 0x0, 418435064) start.
17-03-17 18:11:57.348 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP 1307
17-03-17 18:11:57.348 -07 000000501 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:11:57.348 -07 000000610 INF: FPGA: 'CAMDBLSNAP 392 392 188 188 37184 150' command took 2 ms to send, 1304 ms to get response, and 1314 ms overall
17-03-17 18:11:57.348 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 18:11:57.348 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 11 at Y-position 67.37255859375, Z-Position -0.169423605410614. ------
17-03-17 18:11:57.358 -07 000000618 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:11:57.358 -07 000000433 INF: Y Motor: MoveYZ optimized starting. Moving Y to 68.2126 mm, moving Z to -0.17535 mm
17-03-17 18:11:57.358 -07 000000433 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:11:57.358 -07 000000501 INF: Y Motor: Entering MoveAbsStepped (target = 109140 steps, sync = True, waitForSettling = True)
17-03-17 18:11:57.358 -07 000000593 INF: Z Motor: Entering MoveAbsStepped (DAC = 38305, sync = True, waitForSettling = False)
17-03-17 18:11:57.358 -07 000000593 INF: Z Motor: Moving to -0.175349 mm, started at -0.169424 mm, distance = -5.93 um
17-03-17 18:11:57.358 -07 000000501 INF: Y Motor: Moving to 68.2126 mm, started at 67.3726 mm, delta = 0.8400 mm
17-03-17 18:11:57.368 -07 000000593 INF: FPGA: Xmit ZDACW 38305\n [Z Motor]
17-03-17 18:11:57.378 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:11:57.538 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 1142227216, 0x0, 391868352) end. Duration was 383 ms.
17-03-17 18:11:57.538 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 18:11:57.538 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:11:57.538 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 1406045800, 0x0, 418435064) end. Duration was 381 ms.
17-03-17 18:11:57.538 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-17 18:11:57.538 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:11:57.548 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:11:57.548 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 18:11:57.548 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-17 18:11:57.558 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 18:11:57.758 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:11:57.758 -07 000000502 INF: FPGA: Recv ZDACW
17-03-17 18:11:57.758 -07 000000502 INF: FPGA: Recv YRDPOS 137980
17-03-17 18:11:57.758 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 372 ms to get response, and 398 ms overall
17-03-17 18:11:57.758 -07 000000501 INF: Y Motor: Encoder = 137980 = motor step 107796.9 = 67.3730 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:11:57.758 -07 000000593 INF: FPGA: 'ZDACW 38305' command took 0 ms to send, 382 ms to get response, and 398 ms overall
17-03-17 18:11:57.758 -07 000000618 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 392 ms to get response, and 402 ms overall
17-03-17 18:11:57.758 -07 000000593 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:11:57.758 -07 000000502 INF: FPGA: Recv ZDACR 38305
17-03-17 18:11:57.758 -07 000000501 INF: Y Motor: Last commanded position = 67.3826 mm (107812.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:11:57.758 -07 000000501 INF: Y Motor: Moving 1343 steps-21
17-03-17 18:11:57.768 -07 000000593 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:11:57.768 -07 000000593 INF: Z Motor: MoveAbsStepped took 406 ms (did NOT wait for settling yet))
17-03-17 18:11:57.768 -07 000000501 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:11:57.778 -07 000000618 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:11:57.978 -07 000000541 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:11:57.978 -07 000000618 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 218 ms overall
17-03-17 18:11:58.138 -07 000000502 INF: FPGA: Recv YMVTILE
17-03-17 18:11:58.138 -07 000000501 INF: FPGA: 'YMVTILE 1327' command took 1 ms to send, 369 ms to get response, and 380 ms overall
17-03-17 18:11:58.178 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:11:58.178 -07 000000502 INF: FPGA: Recv YRDPOS 139685
17-03-17 18:11:58.188 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 18:11:58.188 -07 000000501 INF: Y Motor: Encoder = 139685 = motor step 109128.9 = 68.2056 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:11:58.188 -07 000000501 INF: Y Motor: Position error before settling (table move) = -14 encoder counts (-0.007 mm)
17-03-17 18:11:58.188 -07 000000501 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 381 ms, distance = 0.840 mm, average velocity = 2.205 mm/sec
17-03-17 18:11:58.918 -07 000000502 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 10, FrontChillerTemperature: 3.985358,
17-03-17 18:11:59.138 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:11:59.138 -07 000000459 INF: FPGA: Recv YRDPOS 139685
17-03-17 18:11:59.148 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:11:59.148 -07 000000501 INF: Y Motor: Encoder = 139685 = motor step 109128.9 = 68.2056 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:11:59.158 -07 000000501 INF: Y Motor: After move to 68.212608, error = -0.007042, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:11:59.158 -07 000000501 INF: Y Motor: Position error after settling (table move) = -14 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:11:59.158 -07 000000501 INF: Y Motor: Moved to 68.2056 after 1804 ms (table move)
17-03-17 18:11:59.168 -07 000000433 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175349 mm (DAC = 38305)
17-03-17 18:11:59.168 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:11:59.168 -07 000000415 INF: FPGA: Recv ZSGSRD 36581
17-03-17 18:11:59.178 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:11:59.178 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:11:59.178 -07 000000501 INF: FPGA: Recv ZSGSRD 36591
17-03-17 18:11:59.188 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:11:59.188 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:11:59.188 -07 000000012 INF: FPGA: Recv ZSGSRD 36589
17-03-17 18:11:59.198 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:11:59.198 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:11:59.198 -07 000000415 INF: FPGA: Recv ZSGSRD 36589
17-03-17 18:11:59.208 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:11:59.208 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:11:59.208 -07 000000501 INF: FPGA: Recv ZSGSRD 36587
17-03-17 18:11:59.218 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:11:59.218 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:11:59.218 -07 000000415 INF: FPGA: Recv ZSGSRD 36583
17-03-17 18:11:59.228 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:11:59.248 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:11:59.248 -07 000000551 INF: FPGA: Recv ZSGSRD 36590
17-03-17 18:11:59.258 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:11:59.268 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:11:59.268 -07 000000382 INF: FPGA: Recv ZSGSRD 36584
17-03-17 18:11:59.278 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-17 18:11:59.298 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:11:59.298 -07 000000502 INF: FPGA: Recv ZSGSRD 36579
17-03-17 18:11:59.308 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:11:59.308 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:11:59.308 -07 000000618 INF: FPGA: Recv ZSGSRD 36575
17-03-17 18:11:59.318 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:11:59.318 -07 000000433 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:11:59.318 -07 000000502 INF: FPGA: Recv ZPIEZORD 32727
17-03-17 18:11:59.328 -07 000000433 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:11:59.328 -07 000000433 INF: Z Motor: Piezo is near 49.9 V (nominally 0 to 100 V), expect near 58.4 V, since DAC is at 5.845 V. Piezo Error = -8.5 V.
17-03-17 18:11:59.328 -07 000000433 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.3 um, Read 10 ADC samples: Avg = 36585 (-174.5 uncal um), Error = 0.9 uncal um, Median = 36586 (-174.5 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 36575 (-174.4 uncal um), Max = 36591 (-174.5 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-17 18:11:59.328 -07 000000433 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36585, posNoise = 6, negNoise = 10
17-03-17 18:11:59.328 -07 000000433 INF: Z Motor: After move to -0.175349, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:11:59.328 -07 000000433 INF: Z Motor: Settle wait time = 1808 ms, measure time = 158 ms (allowed 150 ms), total time = 1966 ms
17-03-17 18:11:59.328 -07 000000433 INF: Z Motor: Warning: Actual position measuring time = 158 ms, longer than max expected time of 150 ms
17-03-17 18:11:59.328 -07 000000433 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1969 ms
17-03-17 18:11:59.328 -07 000000433 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:11:59.328 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:11:59.328 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:11:59.328 -07 000000415 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:11:59.328 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:11:59.328 -07 000000627 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:11:59.328 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:11:59.328 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:11:59.328 -07 000000627 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:11:59.338 -07 000000627 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 18:11:59.338 -07 000000627 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:11:59.348 -07 000000627 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-17 18:11:59.348 -07 000000627 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 18:11:59.348 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:11:59.398 -07 000000551 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:11:59.588 -07 000000627 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:11:59.598 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:11:59.598 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:11:59.598 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 679626736, 0x0, 559484976) start.
17-03-17 18:11:59.628 -07 000000459 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:11:59.638 -07 000000382 INF: FPGA: Recv CAMSNAP
17-03-17 18:11:59.638 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 280 ms to get response, and 285 ms overall
17-03-17 18:11:59.718 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 679626736, 0x0, 559484976) end. Duration was 128 ms.
17-03-17 18:11:59.718 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:11:59.728 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-17 18:11:59.728 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 131 ms.
17-03-17 18:11:59.738 -07 000000415 INF: Autofocus start
17-03-17 18:11:59.738 -07 000000415 INF: MeasureProfile start
17-03-17 18:11:59.738 -07 000000480 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:11:59.738 -07 000000012 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:11:59.748 -07 000000480 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:11:59.748 -07 000000480 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:11:59.748 -07 000000415 INF: MeasureProfile done
17-03-17 18:11:59.748 -07 000000415 INF: X=0  Z correction [um]=-0.0713522
17-03-17 18:11:59.748 -07 000000415 INF: Autofocus finished
17-03-17 18:11:59.948 -07 000000627 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:11:59.948 -07 000000480 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 202 ms overall
17-03-17 18:11:59.948 -07 000000610 INF: ------------ Scan Snapping tile 11 at Y-position 68.20556640625, Z-position -0.17535315321746. ----------
17-03-17 18:11:59.948 -07 000000610 INF: Cycle	10	Tile	11	Exposure Settings		A	392	G	188	T	188	C	392
17-03-17 18:11:59.958 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36802, sync = True, waitForSettling = True)
17-03-17 18:11:59.958 -07 000000610 INF: Z Motor: Moving to -0.168469 mm, started at -0.175353 mm, distance = 6.88 um
17-03-17 18:11:59.958 -07 000000610 INF: FPGA: Xmit ZDACW 36802\n [Z Motor]
17-03-17 18:11:59.958 -07 000000551 INF: FPGA: Recv ZDACW
17-03-17 18:11:59.968 -07 000000610 INF: FPGA: 'ZDACW 36802' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:11:59.968 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:11:59.968 -07 000000501 INF: FPGA: Recv ZDACR 36802
17-03-17 18:11:59.978 -07 000000610 INF: FPGA: 'ZDACR' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:11:59.978 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:12:00.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:00.128 -07 000000618 INF: FPGA: Recv ZSGSRD 35517
17-03-17 18:12:00.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:12:00.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:00.138 -07 000000012 INF: FPGA: Recv ZSGSRD 35521
17-03-17 18:12:00.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:00.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:00.148 -07 000000618 INF: FPGA: Recv ZSGSRD 35515
17-03-17 18:12:00.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:00.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:00.158 -07 000000501 INF: FPGA: Recv ZSGSRD 35511
17-03-17 18:12:00.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:00.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:00.168 -07 000000618 INF: FPGA: Recv ZSGSRD 35512
17-03-17 18:12:00.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:00.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:00.178 -07 000000501 INF: FPGA: Recv ZSGSRD 35523
17-03-17 18:12:00.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:00.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:00.188 -07 000000433 INF: FPGA: Recv ZSGSRD 35510
17-03-17 18:12:00.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:00.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:00.198 -07 000000593 INF: FPGA: Recv ZSGSRD 35508
17-03-17 18:12:00.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:00.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:00.208 -07 000000541 INF: FPGA: Recv ZSGSRD 35518
17-03-17 18:12:00.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:00.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:00.218 -07 000000593 INF: FPGA: Recv ZSGSRD 35512
17-03-17 18:12:00.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:00.228 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:12:00.228 -07 000000627 INF: FPGA: Recv ZPIEZORD 31293
17-03-17 18:12:00.238 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:00.238 -07 000000610 INF: Z Motor: Piezo is near 46.9 V (nominally 0 to 100 V), expect near 56.2 V, since DAC is at 5.616 V. Piezo Error = -9.3 V.
17-03-17 18:12:00.238 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.5 um, Read 10 ADC samples: Avg = 35515 (-167.6 uncal um), Error = 0.9 uncal um, Median = 35514 (-167.6 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 35508 (-167.6 uncal um), Max = 35523 (-167.7 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 18:12:00.238 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35515, posNoise = 8, negNoise = 7
17-03-17 18:12:00.238 -07 000000610 INF: Z Motor: After move to -0.168469, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:12:00.238 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 18:12:00.238 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:12:00.238 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:12:00.238 -07 000000551 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:12:00.238 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:12:00.238 -07 000000415 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:12:00.238 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:12:00.238 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:12:00.238 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:12:00.238 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:12:00.238 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:12:00.238 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:12:00.238 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:12:00.238 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 18:12:00.238 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:12:00.248 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 18:12:00.248 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:12:00.258 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 18:12:00.258 -07 000000415 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 18:12:00.258 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 18:12:00.258 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 23 ms.
17-03-17 18:12:00.268 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 392 392 188 188 36979 150\n [Camera]
17-03-17 18:12:00.468 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:12:00.858 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 584
17-03-17 18:12:00.858 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 584
17-03-17 18:12:00.858 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:12:00.858 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:12:00.858 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 1441468064, 0x0, 391868352) start.
17-03-17 18:12:00.858 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 584
17-03-17 18:12:00.858 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 584
17-03-17 18:12:00.858 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:12:00.858 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:12:00.858 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 1476890328, 0x0, 418435064) start.
17-03-17 18:12:01.048 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36979 777
17-03-17 18:12:01.198 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP turning grn on 927
17-03-17 18:12:01.258 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 1441468064, 0x0, 391868352) end. Duration was 402 ms.
17-03-17 18:12:01.258 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-17 18:12:01.258 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:12:01.268 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 1476890328, 0x0, 418435064) end. Duration was 403 ms.
17-03-17 18:12:01.268 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-17 18:12:01.268 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:12:01.268 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:12:01.268 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-17 18:12:01.268 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:12:01.278 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-17 18:12:01.388 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1115
17-03-17 18:12:01.388 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1115
17-03-17 18:12:01.388 -07 000000593 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:12:01.388 -07 000000593 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:12:01.388 -07 000000593 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 18:12:01.388 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1115
17-03-17 18:12:01.388 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1115
17-03-17 18:12:01.388 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:12:01.388 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:12:01.388 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2199785120, 0x0, 418435064) start.
17-03-17 18:12:01.568 -07 000000627 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:12:01.568 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 9. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=90, R2=99, Total=189. Warn if over 250 bubbles per interval.
17-03-17 18:12:01.578 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP 1307
17-03-17 18:12:01.578 -07 000000415 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:12:01.578 -07 000000610 INF: FPGA: 'CAMDBLSNAP 392 392 188 188 36979 150' command took 2 ms to send, 1306 ms to get response, and 1315 ms overall
17-03-17 18:12:01.578 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 18:12:01.578 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 12 at Y-position 68.20556640625, Z-Position -0.168479246225775. ------
17-03-17 18:12:01.588 -07 000000551 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:12:01.588 -07 000000627 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.0426 mm, moving Z to -0.17504 mm
17-03-17 18:12:01.588 -07 000000627 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:12:01.588 -07 000000415 INF: Y Motor: Entering MoveAbsStepped (target = 110468 steps, sync = True, waitForSettling = True)
17-03-17 18:12:01.588 -07 000000415 INF: Y Motor: Moving to 69.0426 mm, started at 68.2056 mm, delta = 0.8370 mm
17-03-17 18:12:01.598 -07 000000415 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:12:01.798 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2199785120, 0x0, 418435064) end. Duration was 406 ms.
17-03-17 18:12:01.798 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 406 ms.
17-03-17 18:12:01.798 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:12:01.798 -07 000000593 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 408 ms.
17-03-17 18:12:01.798 -07 000000593 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 410 ms.
17-03-17 18:12:01.798 -07 000000593 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:12:01.798 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:12:01.808 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-17 18:12:01.808 -07 000000593 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 419 ms.
17-03-17 18:12:01.808 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 417 ms.
17-03-17 18:12:01.998 -07 000000593 INF: Z Motor: Entering MoveAbsStepped (DAC = 38237, sync = True, waitForSettling = False)
17-03-17 18:12:01.998 -07 000000593 INF: Z Motor: Moving to -0.175038 mm, started at -0.168479 mm, distance = -6.56 um
17-03-17 18:12:01.998 -07 000000593 INF: FPGA: Xmit ZDACW 38237\n [Z Motor]
17-03-17 18:12:02.068 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:12:02.068 -07 000000502 INF: FPGA: Recv YRDPOS 139686
17-03-17 18:12:02.068 -07 000000502 INF: FPGA: Recv ZDACW
17-03-17 18:12:02.068 -07 000000551 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 472 ms to get response, and 481 ms overall
17-03-17 18:12:02.068 -07 000000593 INF: FPGA: 'ZDACW 38237' command took 0 ms to send, 62 ms to get response, and 67 ms overall
17-03-17 18:12:02.068 -07 000000415 INF: FPGA: 'YRDPOS' command took 0 ms to send, 462 ms to get response, and 478 ms overall
17-03-17 18:12:02.068 -07 000000593 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:12:02.068 -07 000000415 INF: Y Motor: Encoder = 139686 = motor step 109129.7 = 68.2061 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:12:02.068 -07 000000415 INF: Y Motor: Last commanded position = 68.2126 mm (109140.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:12:02.068 -07 000000415 INF: Y Motor: Moving 1338 steps-14
17-03-17 18:12:02.068 -07 000000502 INF: FPGA: Recv ZDACR 38237
17-03-17 18:12:02.078 -07 000000593 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:12:02.078 -07 000000593 INF: Z Motor: MoveAbsStepped took 75 ms (did NOT wait for settling yet))
17-03-17 18:12:02.078 -07 000000415 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:12:02.088 -07 000000551 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:12:02.288 -07 000000593 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:12:02.288 -07 000000551 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 220 ms overall
17-03-17 18:12:02.448 -07 000000502 INF: FPGA: Recv YMVTILE
17-03-17 18:12:02.448 -07 000000415 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 369 ms to get response, and 383 ms overall
17-03-17 18:12:02.488 -07 000000415 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:12:02.488 -07 000000551 INF: FPGA: Recv YRDPOS 141368
17-03-17 18:12:02.498 -07 000000415 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:12:02.498 -07 000000415 INF: Y Motor: Encoder = 141368 = motor step 110443.8 = 69.0273 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:12:02.498 -07 000000415 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-17 18:12:02.498 -07 000000415 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 383 ms, distance = 0.837 mm, average velocity = 2.185 mm/sec
17-03-17 18:12:03.448 -07 000000415 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:12:03.448 -07 000000502 INF: FPGA: Recv YRDPOS 141369
17-03-17 18:12:03.458 -07 000000415 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:03.458 -07 000000415 INF: Y Motor: Encoder = 141369 = motor step 110444.5 = 69.0278 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:12:03.478 -07 000000415 INF: Y Motor: After move to 69.042610, error = -0.014778, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:12:03.478 -07 000000415 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 18:12:03.478 -07 000000415 INF: Y Motor: Moved to 69.0278 after 1886 ms (table move)
17-03-17 18:12:03.478 -07 000000627 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175038 mm (DAC = 38237)
17-03-17 18:12:03.478 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:03.478 -07 000000502 INF: FPGA: Recv ZSGSRD 36543
17-03-17 18:12:03.488 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:12:03.488 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:03.488 -07 000000551 INF: FPGA: Recv ZSGSRD 36537
17-03-17 18:12:03.498 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:03.498 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:03.498 -07 000000502 INF: FPGA: Recv ZSGSRD 36537
17-03-17 18:12:03.508 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:03.508 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:03.508 -07 000000551 INF: FPGA: Recv ZSGSRD 36536
17-03-17 18:12:03.518 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:03.518 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:03.518 -07 000000551 INF: FPGA: Recv ZSGSRD 36537
17-03-17 18:12:03.528 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:03.528 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:03.528 -07 000000415 INF: FPGA: Recv ZSGSRD 36543
17-03-17 18:12:03.538 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:03.538 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:03.538 -07 000000502 INF: FPGA: Recv ZSGSRD 36537
17-03-17 18:12:03.548 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:03.548 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:03.548 -07 000000593 INF: FPGA: Recv ZSGSRD 36533
17-03-17 18:12:03.558 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:03.558 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:03.558 -07 000000502 INF: FPGA: Recv ZSGSRD 36534
17-03-17 18:12:03.568 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:03.568 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:03.568 -07 000000608 INF: FPGA: Recv ZSGSRD 36537
17-03-17 18:12:03.578 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:03.578 -07 000000627 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:12:03.578 -07 000000608 INF: FPGA: Recv ZPIEZORD 32681
17-03-17 18:12:03.588 -07 000000627 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:03.588 -07 000000627 INF: Z Motor: Piezo is near 49.8 V (nominally 0 to 100 V), expect near 58.3 V, since DAC is at 5.835 V. Piezo Error = -8.5 V.
17-03-17 18:12:03.588 -07 000000627 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.0 um, Read 10 ADC samples: Avg = 36537 (-174.2 uncal um), Error = 0.9 uncal um, Median = 36537 (-174.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 36533 (-174.1 uncal um), Max = 36543 (-174.2 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 18:12:03.588 -07 000000627 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36537, posNoise = 6, negNoise = 4
17-03-17 18:12:03.588 -07 000000627 INF: Z Motor: After move to -0.175038, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:12:03.588 -07 000000627 INF: Z Motor: Settle wait time = 1478 ms, measure time = 108 ms (allowed 150 ms), total time = 1586 ms
17-03-17 18:12:03.588 -07 000000627 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-17 18:12:03.638 -07 000000627 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2049 ms
17-03-17 18:12:03.638 -07 000000627 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:12:03.638 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:12:03.638 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:12:03.638 -07 000000608 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:12:03.638 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:12:03.638 -07 000000627 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:12:03.638 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:12:03.638 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 18:12:03.638 -07 000000627 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:12:03.648 -07 000000627 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:12:03.648 -07 000000627 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:12:03.658 -07 000000627 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 9 ms.
17-03-17 18:12:03.658 -07 000000627 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 14 ms.
17-03-17 18:12:03.658 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:12:03.698 -07 000000486 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:12:03.898 -07 000000502 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:12:03.898 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:12:03.898 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:12:03.898 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1177649480, 0x0, 559484976) start.
17-03-17 18:12:03.938 -07 000000415 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:12:03.938 -07 000000512 INF: FPGA: Recv CAMSNAP
17-03-17 18:12:03.938 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 278 ms to get response, and 284 ms overall
17-03-17 18:12:04.028 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1177649480, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 18:12:04.028 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:12:04.028 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-17 18:12:04.028 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 18:12:04.238 -07 000000433 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:12:04.238 -07 000000608 INF: Autofocus start
17-03-17 18:12:04.238 -07 000000608 INF: MeasureProfile start
17-03-17 18:12:04.238 -07 000000415 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:12:04.248 -07 000000433 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:12:04.248 -07 000000433 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:12:04.248 -07 000000608 INF: MeasureProfile done
17-03-17 18:12:04.248 -07 000000608 INF: X=0  Z correction [um]=-0.0713522
17-03-17 18:12:04.248 -07 000000608 INF: Autofocus finished
17-03-17 18:12:04.288 -07 000000502 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 10, FrontChillerTemperature: 4.005817,
17-03-17 18:12:04.448 -07 000000415 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:12:04.448 -07 000000433 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 203 ms overall
17-03-17 18:12:04.448 -07 000000610 INF: ------------ Scan Snapping tile 12 at Y-position 69.02783203125, Z-position -0.175044791034655. ----------
17-03-17 18:12:04.448 -07 000000610 INF: Cycle	10	Tile	12	Exposure Settings		A	392	G	188	T	188	C	392
17-03-17 18:12:04.458 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36734, sync = True, waitForSettling = True)
17-03-17 18:12:04.458 -07 000000610 INF: Z Motor: Moving to -0.168157 mm, started at -0.175045 mm, distance = 6.89 um
17-03-17 18:12:04.458 -07 000000610 INF: FPGA: Xmit ZDACW 36734\n [Z Motor]
17-03-17 18:12:04.458 -07 000000512 INF: FPGA: Recv ZDACW
17-03-17 18:12:04.468 -07 000000610 INF: FPGA: 'ZDACW 36734' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:12:04.468 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:12:04.468 -07 000000627 INF: FPGA: Recv ZDACR 36734
17-03-17 18:12:04.478 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:04.478 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:12:04.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:04.628 -07 000000627 INF: FPGA: Recv ZSGSRD 35469
17-03-17 18:12:04.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:04.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:04.658 -07 000000551 INF: FPGA: Recv ZSGSRD 35464
17-03-17 18:12:04.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:12:04.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:04.668 -07 000000415 INF: FPGA: Recv ZSGSRD 35464
17-03-17 18:12:04.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:04.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:04.688 -07 000000608 INF: FPGA: Recv ZSGSRD 35467
17-03-17 18:12:04.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 18:12:04.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:04.698 -07 000000486 INF: FPGA: Recv ZSGSRD 35470
17-03-17 18:12:04.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:04.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:04.708 -07 000000627 INF: FPGA: Recv ZSGSRD 35467
17-03-17 18:12:04.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:04.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:04.718 -07 000000433 INF: FPGA: Recv ZSGSRD 35459
17-03-17 18:12:04.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:04.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:04.728 -07 000000512 INF: FPGA: Recv ZSGSRD 35468
17-03-17 18:12:04.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:04.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:04.738 -07 000000627 INF: FPGA: Recv ZSGSRD 35470
17-03-17 18:12:04.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:04.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:04.748 -07 000000512 INF: FPGA: Recv ZSGSRD 35469
17-03-17 18:12:04.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:04.758 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:12:04.758 -07 000000433 INF: FPGA: Recv ZPIEZORD 31244
17-03-17 18:12:04.768 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:04.768 -07 000000610 INF: Z Motor: Piezo is near 46.7 V (nominally 0 to 100 V), expect near 56.1 V, since DAC is at 5.605 V. Piezo Error = -9.3 V.
17-03-17 18:12:04.768 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.2 um, Read 10 ADC samples: Avg = 35467 (-167.3 uncal um), Error = 0.9 uncal um, Median = 35468 (-167.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35459 (-167.2 uncal um), Max = 35470 (-167.3 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 18:12:04.768 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35467, posNoise = 3, negNoise = 8
17-03-17 18:12:04.768 -07 000000610 INF: Z Motor: After move to -0.168157, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:12:04.768 -07 000000610 INF: Z Motor: MoveAbsStepped took 309 ms)
17-03-17 18:12:04.768 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:12:04.768 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:12:04.768 -07 000000593 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:12:04.768 -07 000000551 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:12:04.768 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:12:04.768 -07 000000486 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:12:04.768 -07 000000627 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:12:04.768 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:12:04.768 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:12:04.768 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:12:04.768 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:12:04.768 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:12:04.778 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-17 18:12:04.778 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:12:04.778 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 18:12:04.778 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:12:04.788 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 18:12:04.788 -07 000000551 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 18:12:04.788 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 18:12:04.788 -07 000000627 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 18:12:04.798 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 392 392 188 188 36910 150\n [Camera]
17-03-17 18:12:04.998 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:12:05.388 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 584
17-03-17 18:12:05.388 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 584
17-03-17 18:12:05.388 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:12:05.388 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:12:05.388 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 2235207384, 0x0, 391868352) start.
17-03-17 18:12:05.388 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 584
17-03-17 18:12:05.388 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 584
17-03-17 18:12:05.388 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:12:05.388 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:12:05.388 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-17 18:12:05.578 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36910 779
17-03-17 18:12:05.728 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP turning grn on 927
17-03-17 18:12:05.788 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 2235207384, 0x0, 391868352) end. Duration was 403 ms.
17-03-17 18:12:05.788 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 18:12:05.788 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:12:05.788 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 402 ms.
17-03-17 18:12:05.788 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-17 18:12:05.788 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:12:05.798 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:12:05.798 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 408 ms.
17-03-17 18:12:05.798 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 18:12:05.808 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 415 ms.
17-03-17 18:12:05.918 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1115
17-03-17 18:12:05.918 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1115
17-03-17 18:12:05.918 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:12:05.918 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:12:05.918 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) start.
17-03-17 18:12:05.918 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1115
17-03-17 18:12:05.918 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1115
17-03-17 18:12:05.918 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:12:05.918 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:12:05.918 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 2369425112, 0x0, 418435064) start.
17-03-17 18:12:06.108 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP 1307
17-03-17 18:12:06.108 -07 000000486 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:12:06.108 -07 000000610 INF: FPGA: 'CAMDBLSNAP 392 392 188 188 36910 150' command took 2 ms to send, 1305 ms to get response, and 1315 ms overall
17-03-17 18:12:06.108 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 18:12:06.108 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 13 at Y-position 69.02783203125, Z-Position -0.168170884042971. ------
17-03-17 18:12:06.118 -07 000000593 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:12:06.118 -07 000000459 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.8726 mm, moving Z to -0.17452 mm
17-03-17 18:12:06.118 -07 000000459 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:12:06.118 -07 000000486 INF: Y Motor: Entering MoveAbsStepped (target = 111796 steps, sync = True, waitForSettling = True)
17-03-17 18:12:06.118 -07 000000486 INF: Y Motor: Moving to 69.8726 mm, started at 69.0278 mm, delta = 0.8448 mm
17-03-17 18:12:06.128 -07 000000486 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:12:06.318 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 2369425112, 0x0, 418435064) end. Duration was 396 ms.
17-03-17 18:12:06.318 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 18:12:06.318 -07 000000433 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:12:06.318 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) end. Duration was 402 ms.
17-03-17 18:12:06.318 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-17 18:12:06.318 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:12:06.318 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:12:06.328 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 407 ms.
17-03-17 18:12:06.328 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 18:12:06.328 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-17 18:12:06.598 -07 000000433 INF: Z Motor: Entering MoveAbsStepped (DAC = 38123, sync = True, waitForSettling = False)
17-03-17 18:12:06.598 -07 000000433 INF: Z Motor: Moving to -0.174516 mm, started at -0.168171 mm, distance = -6.35 um
17-03-17 18:12:06.598 -07 000000433 INF: FPGA: Xmit ZDACW 38123\n [Z Motor]
17-03-17 18:12:06.638 -07 000000512 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:12:06.638 -07 000000512 INF: FPGA: Recv YRDPOS 141369
17-03-17 18:12:06.638 -07 000000593 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 510 ms to get response, and 520 ms overall
17-03-17 18:12:06.638 -07 000000486 INF: FPGA: 'YRDPOS' command took 0 ms to send, 500 ms to get response, and 516 ms overall
17-03-17 18:12:06.638 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:12:06.638 -07 000000512 INF: FPGA: Recv ZDACW
17-03-17 18:12:06.638 -07 000000433 INF: FPGA: 'ZDACW 38123' command took 0 ms to send, 31 ms to get response, and 35 ms overall
17-03-17 18:12:06.638 -07 000000433 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:12:06.638 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 9. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=90, R2=99, Total=189. Warn if over 250 bubbles per interval.
17-03-17 18:12:06.638 -07 000000486 INF: Y Motor: Encoder = 141369 = motor step 110444.5 = 69.0278 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:12:06.638 -07 000000486 INF: Y Motor: Last commanded position = 69.0426 mm (110468.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:12:06.638 -07 000000486 INF: Y Motor: Moving 1352 steps-31
17-03-17 18:12:06.638 -07 000000512 INF: FPGA: Recv ZDACR 38123
17-03-17 18:12:06.648 -07 000000433 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:12:06.648 -07 000000433 INF: Z Motor: MoveAbsStepped took 44 ms (did NOT wait for settling yet))
17-03-17 18:12:06.648 -07 000000486 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:12:06.658 -07 000000593 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:12:06.858 -07 000000512 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:12:06.858 -07 000000593 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 221 ms overall
17-03-17 18:12:07.018 -07 000000433 INF: FPGA: Recv YMVTILE
17-03-17 18:12:07.018 -07 000000486 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 385 ms overall
17-03-17 18:12:07.058 -07 000000486 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:12:07.058 -07 000000593 INF: FPGA: Recv YRDPOS 143081
17-03-17 18:12:07.068 -07 000000486 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:12:07.068 -07 000000486 INF: Y Motor: Encoder = 143081 = motor step 111782.0 = 69.8638 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:12:07.068 -07 000000486 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-17 18:12:07.068 -07 000000486 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 385 ms, distance = 0.845 mm, average velocity = 2.194 mm/sec
17-03-17 18:12:08.018 -07 000000486 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:12:08.018 -07 000000433 INF: FPGA: Recv YRDPOS 143081
17-03-17 18:12:08.028 -07 000000486 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:08.028 -07 000000486 INF: Y Motor: Encoder = 143081 = motor step 111782.0 = 69.8638 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:12:08.048 -07 000000486 INF: Y Motor: After move to 69.872612, error = -0.008842, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:12:08.048 -07 000000486 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:12:08.048 -07 000000486 INF: Y Motor: Moved to 69.8638 after 1926 ms (table move)
17-03-17 18:12:08.048 -07 000000459 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174516 mm (DAC = 38123)
17-03-17 18:12:08.048 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:08.048 -07 000000486 INF: FPGA: Recv ZSGSRD 36452
17-03-17 18:12:08.058 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:12:08.058 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:08.058 -07 000000486 INF: FPGA: Recv ZSGSRD 36459
17-03-17 18:12:08.068 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:08.068 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:08.068 -07 000000593 INF: FPGA: Recv ZSGSRD 36449
17-03-17 18:12:08.078 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:08.078 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:08.078 -07 000000593 INF: FPGA: Recv ZSGSRD 36448
17-03-17 18:12:08.088 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:08.088 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:08.088 -07 000000593 INF: FPGA: Recv ZSGSRD 36460
17-03-17 18:12:08.098 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:08.098 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:08.098 -07 000000593 INF: FPGA: Recv ZSGSRD 36463
17-03-17 18:12:08.108 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:08.108 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:08.108 -07 000000512 INF: FPGA: Recv ZSGSRD 36453
17-03-17 18:12:08.118 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:08.118 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:08.118 -07 000000486 INF: FPGA: Recv ZSGSRD 36451
17-03-17 18:12:08.128 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:08.128 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:08.128 -07 000000486 INF: FPGA: Recv ZSGSRD 36455
17-03-17 18:12:08.138 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:08.138 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:08.138 -07 000000593 INF: FPGA: Recv ZSGSRD 36454
17-03-17 18:12:08.148 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:08.148 -07 000000459 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:12:08.148 -07 000000593 INF: FPGA: Recv ZPIEZORD 32562
17-03-17 18:12:08.158 -07 000000459 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:08.158 -07 000000459 INF: Z Motor: Piezo is near 49.6 V (nominally 0 to 100 V), expect near 58.2 V, since DAC is at 5.817 V. Piezo Error = -8.6 V.
17-03-17 18:12:08.158 -07 000000459 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.5 um, Read 10 ADC samples: Avg = 36454 (-173.6 uncal um), Error = 0.9 uncal um, Median = 36454 (-173.6 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 36448 (-173.6 uncal um), Max = 36463 (-173.7 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 18:12:08.158 -07 000000459 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36454, posNoise = 9, negNoise = 6
17-03-17 18:12:08.158 -07 000000459 INF: Z Motor: After move to -0.174516, error = 0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:12:08.158 -07 000000459 INF: Z Motor: Settle wait time = 1449 ms, measure time = 105 ms (allowed 150 ms), total time = 1554 ms
17-03-17 18:12:08.158 -07 000000459 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 18:12:08.208 -07 000000459 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2089 ms
17-03-17 18:12:08.208 -07 000000459 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:12:08.208 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:12:08.208 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:12:08.208 -07 000000433 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:12:08.208 -07 000000486 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:12:08.208 -07 000000512 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:12:08.208 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:12:08.208 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 18:12:08.208 -07 000000512 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:12:08.218 -07 000000512 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:12:08.218 -07 000000512 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:12:08.228 -07 000000512 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-17 18:12:08.228 -07 000000512 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-17 18:12:08.228 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:12:08.278 -07 000000459 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:12:08.478 -07 000000593 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:12:08.478 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:12:08.478 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:12:08.478 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2270629648, 0x0, 559484976) start.
17-03-17 18:12:08.508 -07 000000486 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:12:08.518 -07 000000459 INF: FPGA: Recv CAMSNAP
17-03-17 18:12:08.518 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 280 ms to get response, and 284 ms overall
17-03-17 18:12:08.598 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2270629648, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 18:12:08.598 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:12:08.608 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-17 18:12:08.608 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 18:12:08.618 -07 000000459 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:12:08.618 -07 000000486 INF: Autofocus start
17-03-17 18:12:08.618 -07 000000486 INF: MeasureProfile start
17-03-17 18:12:08.618 -07 000000512 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:12:08.628 -07 000000459 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:12:08.628 -07 000000459 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:12:08.628 -07 000000486 INF: MeasureProfile done
17-03-17 18:12:08.628 -07 000000486 INF: X=32  Z correction [um]=0.09220707
17-03-17 18:12:08.628 -07 000000486 INF: Autofocus finished
17-03-17 18:12:08.828 -07 000000012 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:12:08.828 -07 000000459 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:12:08.828 -07 000000610 INF: ------------ Scan Snapping tile 13 at Y-position 69.86376953125, Z-position -0.174511581426889. ----------
17-03-17 18:12:08.828 -07 000000610 INF: Cycle	10	Tile	13	Exposure Settings		A	392	G	188	T	188	C	392
17-03-17 18:12:08.838 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36656, sync = True, waitForSettling = True)
17-03-17 18:12:08.838 -07 000000610 INF: Z Motor: Moving to -0.167800 mm, started at -0.174512 mm, distance = 6.71 um
17-03-17 18:12:08.838 -07 000000610 INF: FPGA: Xmit ZDACW 36656\n [Z Motor]
17-03-17 18:12:08.838 -07 000000486 INF: FPGA: Recv ZDACW
17-03-17 18:12:08.848 -07 000000610 INF: FPGA: 'ZDACW 36656' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:12:08.848 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:12:08.848 -07 000000541 INF: FPGA: Recv ZDACR 36656
17-03-17 18:12:08.858 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:08.858 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:12:09.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:09.008 -07 000000433 INF: FPGA: Recv ZSGSRD 35414
17-03-17 18:12:09.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:12:09.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:09.018 -07 000000541 INF: FPGA: Recv ZSGSRD 35413
17-03-17 18:12:09.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:09.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:09.028 -07 000000486 INF: FPGA: Recv ZSGSRD 35410
17-03-17 18:12:09.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:09.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:09.038 -07 000000512 INF: FPGA: Recv ZSGSRD 35407
17-03-17 18:12:09.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:09.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:09.048 -07 000000433 INF: FPGA: Recv ZSGSRD 35414
17-03-17 18:12:09.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:09.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:09.058 -07 000000541 INF: FPGA: Recv ZSGSRD 35409
17-03-17 18:12:09.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:09.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:09.068 -07 000000433 INF: FPGA: Recv ZSGSRD 35413
17-03-17 18:12:09.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:09.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:09.078 -07 000000593 INF: FPGA: Recv ZSGSRD 35409
17-03-17 18:12:09.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:09.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:09.088 -07 000000433 INF: FPGA: Recv ZSGSRD 35404
17-03-17 18:12:09.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:09.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:09.098 -07 000000593 INF: FPGA: Recv ZSGSRD 35416
17-03-17 18:12:09.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:09.108 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:12:09.108 -07 000000486 INF: FPGA: Recv ZPIEZORD 31163
17-03-17 18:12:09.118 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:09.118 -07 000000610 INF: Z Motor: Piezo is near 46.6 V (nominally 0 to 100 V), expect near 55.9 V, since DAC is at 5.593 V. Piezo Error = -9.4 V.
17-03-17 18:12:09.118 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.8 um, Read 10 ADC samples: Avg = 35411 (-166.9 uncal um), Error = 0.9 uncal um, Median = 35412 (-166.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35404 (-166.9 uncal um), Max = 35416 (-167.0 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 18:12:09.118 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35411, posNoise = 5, negNoise = 7
17-03-17 18:12:09.118 -07 000000610 INF: Z Motor: After move to -0.167800, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:12:09.118 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 18:12:09.118 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:12:09.118 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:12:09.118 -07 000000593 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:12:09.118 -07 000000541 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:12:09.118 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:12:09.118 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:12:09.118 -07 000000486 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:12:09.118 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:12:09.118 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:12:09.118 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:12:09.118 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:12:09.118 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:12:09.128 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 18:12:09.128 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:12:09.128 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 18:12:09.128 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:12:09.138 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 18:12:09.138 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 18:12:09.138 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 18:12:09.138 -07 000000486 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 18:12:09.138 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 392 392 188 188 36833 150\n [Camera]
17-03-17 18:12:09.348 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:12:09.658 -07 000000486 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 10, FrontChillerTemperature: 3.985358,
17-03-17 18:12:09.738 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 584
17-03-17 18:12:09.738 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 584
17-03-17 18:12:09.738 -07 000000593 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:12:09.738 -07 000000593 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:12:09.738 -07 000000593 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) start.
17-03-17 18:12:09.738 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 584
17-03-17 18:12:09.738 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 584
17-03-17 18:12:09.738 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:12:09.738 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:12:09.738 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) start.
17-03-17 18:12:09.928 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36833 777
17-03-17 18:12:10.078 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning grn on 927
17-03-17 18:12:10.128 -07 000000593 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) end. Duration was 396 ms.
17-03-17 18:12:10.128 -07 000000593 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 18:12:10.128 -07 000000593 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:12:10.138 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:12:10.138 -07 000000593 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 18:12:10.138 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) end. Duration was 399 ms.
17-03-17 18:12:10.138 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 18:12:10.138 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:12:10.148 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-17 18:12:10.148 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-17 18:12:10.268 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1115
17-03-17 18:12:10.268 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1115
17-03-17 18:12:10.268 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:12:10.398 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1115
17-03-17 18:12:10.398 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1115
17-03-17 18:12:10.398 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:12:10.398 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:12:10.398 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 2620985504, 0x0, 391868352) start.
17-03-17 18:12:10.408 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:12:10.408 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-17 18:12:10.458 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP 1307
17-03-17 18:12:10.458 -07 000000486 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:12:10.458 -07 000000610 INF: FPGA: 'CAMDBLSNAP 392 392 188 188 36833 150' command took 2 ms to send, 1304 ms to get response, and 1314 ms overall
17-03-17 18:12:10.458 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 18:12:10.458 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 14 at Y-position 69.86376953125, Z-Position -0.167811128163032. ------
17-03-17 18:12:10.458 -07 000000382 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:12:10.458 -07 000000012 INF: Y Motor: MoveYZ optimized starting. Moving Y to 70.7026 mm, moving Z to -0.17424 mm
17-03-17 18:12:10.458 -07 000000012 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:12:10.468 -07 000000480 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:12:10.468 -07 000000512 INF: Y Motor: Entering MoveAbsStepped (target = 113124 steps, sync = True, waitForSettling = True)
17-03-17 18:12:10.468 -07 000000382 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 18:12:10.468 -07 000000512 INF: Y Motor: Moving to 70.7026 mm, started at 69.8638 mm, delta = 0.8388 mm
17-03-17 18:12:10.468 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:12:10.468 -07 000000551 INF: Z Motor: Entering MoveAbsStepped (DAC = 38063, sync = True, waitForSettling = False)
17-03-17 18:12:10.468 -07 000000551 INF: Z Motor: Moving to -0.174241 mm, started at -0.167811 mm, distance = -6.43 um
17-03-17 18:12:10.468 -07 000000541 INF: FPGA: Recv YRDPOS 143082
17-03-17 18:12:10.478 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:12:10.478 -07 000000512 INF: Y Motor: Encoder = 143082 = motor step 111782.8 = 69.8643 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:12:10.478 -07 000000551 INF: FPGA: Xmit ZDACW 38063\n [Z Motor]
17-03-17 18:12:10.478 -07 000000512 INF: Y Motor: Last commanded position = 69.8726 mm (111796.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:12:10.478 -07 000000512 INF: Y Motor: Moving 1341 steps-18
17-03-17 18:12:10.478 -07 000000541 INF: FPGA: Recv ZDACW
17-03-17 18:12:10.488 -07 000000382 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:12:10.488 -07 000000551 INF: FPGA: 'ZDACW 38063' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-17 18:12:10.498 -07 000000512 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:12:10.508 -07 000000551 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:12:10.798 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 394 ms.
17-03-17 18:12:10.798 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 18:12:10.798 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:12:10.798 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 2620985504, 0x0, 391868352) end. Duration was 401 ms.
17-03-17 18:12:10.798 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 18:12:10.798 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:12:10.798 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:12:10.808 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:12:10.808 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 538 ms.
17-03-17 18:12:10.808 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-17 18:12:10.918 -07 000000541 INF: FPGA: Recv ZDACR 38063
17-03-17 18:12:10.918 -07 000000541 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:12:10.918 -07 000000541 INF: FPGA: Recv YMVTILE
17-03-17 18:12:10.918 -07 000000382 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 426 ms to get response, and 453 ms overall
17-03-17 18:12:10.918 -07 000000512 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 416 ms to get response, and 440 ms overall
17-03-17 18:12:10.918 -07 000000551 INF: FPGA: 'ZDACR' command took 0 ms to send, 405 ms to get response, and 435 ms overall
17-03-17 18:12:10.918 -07 000000551 INF: Z Motor: MoveAbsStepped took 454 ms (did NOT wait for settling yet))
17-03-17 18:12:10.948 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:12:10.958 -07 000000382 INF: FPGA: Recv YRDPOS 144771
17-03-17 18:12:10.968 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:12:10.968 -07 000000512 INF: Y Motor: Encoder = 144771 = motor step 113102.3 = 70.6890 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:12:10.968 -07 000000512 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 18:12:10.968 -07 000000512 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 440 ms, distance = 0.839 mm, average velocity = 1.906 mm/sec
17-03-17 18:12:11.568 -07 000000551 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:12:11.578 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 9. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=90, R2=99, Total=189. Warn if over 250 bubbles per interval.
17-03-17 18:12:11.918 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:12:11.918 -07 000000382 INF: FPGA: Recv YRDPOS 144771
17-03-17 18:12:11.928 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:11.928 -07 000000512 INF: Y Motor: Encoder = 144771 = motor step 113102.3 = 70.6890 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:12:11.938 -07 000000512 INF: Y Motor: After move to 70.702606, error = -0.013641, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:12:11.948 -07 000000512 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:12:11.948 -07 000000512 INF: Y Motor: Moved to 70.6890 after 1477 ms (table move)
17-03-17 18:12:11.948 -07 000000012 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174241 mm (DAC = 38063)
17-03-17 18:12:11.948 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:11.948 -07 000000551 INF: FPGA: Recv ZSGSRD 36414
17-03-17 18:12:11.958 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:12:11.958 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:11.958 -07 000000512 INF: FPGA: Recv ZSGSRD 36411
17-03-17 18:12:11.968 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:12:11.968 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:11.968 -07 000000382 INF: FPGA: Recv ZSGSRD 36412
17-03-17 18:12:11.978 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:11.978 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:11.978 -07 000000512 INF: FPGA: Recv ZSGSRD 36417
17-03-17 18:12:11.988 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:11.988 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:11.988 -07 000000382 INF: FPGA: Recv ZSGSRD 36409
17-03-17 18:12:11.998 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:11.998 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:11.998 -07 000000382 INF: FPGA: Recv ZSGSRD 36412
17-03-17 18:12:12.008 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:12.008 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:12.008 -07 000000551 INF: FPGA: Recv ZSGSRD 36415
17-03-17 18:12:12.018 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:12.018 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:12.018 -07 000000541 INF: FPGA: Recv ZSGSRD 36414
17-03-17 18:12:12.028 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:12.028 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:12.028 -07 000000551 INF: FPGA: Recv ZSGSRD 36415
17-03-17 18:12:12.038 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:12.038 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:12.038 -07 000000541 INF: FPGA: Recv ZSGSRD 36410
17-03-17 18:12:12.048 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:12.048 -07 000000012 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:12:12.048 -07 000000541 INF: FPGA: Recv ZPIEZORD 32516
17-03-17 18:12:12.058 -07 000000012 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:12.058 -07 000000012 INF: Z Motor: Piezo is near 49.5 V (nominally 0 to 100 V), expect near 58.1 V, since DAC is at 5.808 V. Piezo Error = -8.6 V.
17-03-17 18:12:12.058 -07 000000012 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.2 um, Read 10 ADC samples: Avg = 36413 (-173.4 uncal um), Error = 0.9 uncal um, Median = 36413 (-173.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 36409 (-173.3 uncal um), Max = 36417 (-173.4 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 18:12:12.058 -07 000000012 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36413, posNoise = 4, negNoise = 4
17-03-17 18:12:12.058 -07 000000012 INF: Z Motor: After move to -0.174241, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:12:12.058 -07 000000012 INF: Z Motor: Settle wait time = 1479 ms, measure time = 108 ms (allowed 150 ms), total time = 1587 ms
17-03-17 18:12:12.058 -07 000000012 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-17 18:12:12.108 -07 000000012 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1640 ms
17-03-17 18:12:12.108 -07 000000012 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:12:12.108 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:12:12.108 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:12:12.108 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:12:12.108 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:12:12.108 -07 000000551 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:12:12.108 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:12:12.108 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 18:12:12.108 -07 000000551 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:12:12.118 -07 000000551 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:12:12.118 -07 000000551 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:12:12.118 -07 000000551 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 18:12:12.118 -07 000000551 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 13 ms.
17-03-17 18:12:12.128 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:12:12.168 -07 000000382 INF: FPGA: Recv @CAMSNAP turning led on 42
17-03-17 18:12:12.368 -07 000000382 INF: FPGA: Recv @CAMSNAP img rdy 242
17-03-17 18:12:12.368 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 242
17-03-17 18:12:12.378 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:12:12.378 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2281705520, 0x0, 559484976) start.
17-03-17 18:12:12.408 -07 000000012 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:12:12.408 -07 000000551 INF: FPGA: Recv CAMSNAP
17-03-17 18:12:12.408 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 277 ms to get response, and 284 ms overall
17-03-17 18:12:12.498 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2281705520, 0x0, 559484976) end. Duration was 125 ms.
17-03-17 18:12:12.498 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:12:12.498 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 18:12:12.498 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms.
17-03-17 18:12:12.608 -07 000000012 INF: Autofocus start
17-03-17 18:12:12.608 -07 000000012 INF: MeasureProfile start
17-03-17 18:12:12.608 -07 000000382 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:12:12.608 -07 000000551 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:12:12.618 -07 000000382 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:12:12.618 -07 000000382 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:12:12.618 -07 000000012 INF: MeasureProfile done
17-03-17 18:12:12.618 -07 000000012 INF: X=0  Z correction [um]=-0.0713522
17-03-17 18:12:12.618 -07 000000012 INF: Autofocus finished
17-03-17 18:12:12.818 -07 000000551 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:12:12.818 -07 000000382 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:12:12.818 -07 000000610 INF: ------------ Scan Snapping tile 14 at Y-position 70.68896484375, Z-position -0.174248188729077. ----------
17-03-17 18:12:12.818 -07 000000610 INF: Cycle	10	Tile	14	Exposure Settings		A	392	G	188	T	188	C	392
17-03-17 18:12:12.828 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36560, sync = True, waitForSettling = True)
17-03-17 18:12:12.828 -07 000000610 INF: Z Motor: Moving to -0.167361 mm, started at -0.174248 mm, distance = 6.89 um
17-03-17 18:12:12.828 -07 000000610 INF: FPGA: Xmit ZDACW 36560\n [Z Motor]
17-03-17 18:12:12.828 -07 000000512 INF: FPGA: Recv ZDACW
17-03-17 18:12:12.838 -07 000000610 INF: FPGA: 'ZDACW 36560' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:12:12.838 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:12:12.838 -07 000000512 INF: FPGA: Recv ZDACR 36560
17-03-17 18:12:12.848 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:12.848 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:12:12.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:12.998 -07 000000551 INF: FPGA: Recv ZSGSRD 35346
17-03-17 18:12:13.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:12:13.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:13.008 -07 000000512 INF: FPGA: Recv ZSGSRD 35342
17-03-17 18:12:13.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:13.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:13.018 -07 000000541 INF: FPGA: Recv ZSGSRD 35337
17-03-17 18:12:13.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:13.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:13.028 -07 000000382 INF: FPGA: Recv ZSGSRD 35347
17-03-17 18:12:13.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:13.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:13.038 -07 000000541 INF: FPGA: Recv ZSGSRD 35340
17-03-17 18:12:13.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:13.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:13.048 -07 000000551 INF: FPGA: Recv ZSGSRD 35347
17-03-17 18:12:13.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:13.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:13.058 -07 000000551 INF: FPGA: Recv ZSGSRD 35343
17-03-17 18:12:13.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:13.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:13.068 -07 000000551 INF: FPGA: Recv ZSGSRD 35346
17-03-17 18:12:13.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:13.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:13.078 -07 000000382 INF: FPGA: Recv ZSGSRD 35341
17-03-17 18:12:13.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:13.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:13.088 -07 000000382 INF: FPGA: Recv ZSGSRD 35336
17-03-17 18:12:13.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:13.098 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:12:13.098 -07 000000512 INF: FPGA: Recv ZPIEZORD 31091
17-03-17 18:12:13.108 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:13.108 -07 000000610 INF: Z Motor: Piezo is near 46.4 V (nominally 0 to 100 V), expect near 55.8 V, since DAC is at 5.579 V. Piezo Error = -9.4 V.
17-03-17 18:12:13.108 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.4 um, Read 10 ADC samples: Avg = 35342 (-166.5 uncal um), Error = 0.9 uncal um, Median = 35342 (-166.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35336 (-166.5 uncal um), Max = 35347 (-166.5 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 18:12:13.108 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35342, posNoise = 5, negNoise = 6
17-03-17 18:12:13.108 -07 000000610 INF: Z Motor: After move to -0.167361, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:12:13.108 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 18:12:13.108 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:12:13.108 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:12:13.108 -07 000000551 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:12:13.108 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:12:13.108 -07 000000012 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:12:13.108 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:12:13.108 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:12:13.108 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:12:13.108 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:12:13.108 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:12:13.108 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:12:13.108 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:12:13.118 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 18:12:13.118 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:12:13.118 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 18:12:13.118 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:12:13.128 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 18:12:13.128 -07 000000012 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 18:12:13.128 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms.
17-03-17 18:12:13.128 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 18:12:13.128 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 392 392 188 188 36736 150\n [Camera]
17-03-17 18:12:13.328 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:12:13.728 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 584
17-03-17 18:12:13.728 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 584
17-03-17 18:12:13.728 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:12:13.728 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 584
17-03-17 18:12:13.728 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 584
17-03-17 18:12:13.728 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:12:13.738 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:12:13.738 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2300786904, 0x0, 391868352) start.
17-03-17 18:12:13.738 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:12:13.738 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 2336209168, 0x0, 418435064) start.
17-03-17 18:12:13.918 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36736 777
17-03-17 18:12:14.068 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP turning grn on 927
17-03-17 18:12:14.128 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2300786904, 0x0, 391868352) end. Duration was 398 ms.
17-03-17 18:12:14.128 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-17 18:12:14.138 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:12:14.138 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 2336209168, 0x0, 418435064) end. Duration was 396 ms.
17-03-17 18:12:14.248 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 507 ms.
17-03-17 18:12:14.248 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:12:14.248 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 114 ms.
17-03-17 18:12:14.248 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 522 ms.
17-03-17 18:12:14.248 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:12:14.258 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1115
17-03-17 18:12:14.258 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1115
17-03-17 18:12:14.258 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:12:14.258 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1115
17-03-17 18:12:14.258 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1115
17-03-17 18:12:14.258 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 529 ms.
17-03-17 18:12:14.258 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:12:14.258 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:12:14.258 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 18:12:14.268 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:12:14.268 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-17 18:12:14.448 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP 1308
17-03-17 18:12:14.448 -07 000000512 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:12:14.448 -07 000000610 INF: FPGA: 'CAMDBLSNAP 392 392 188 188 36736 150' command took 2 ms to send, 1304 ms to get response, and 1315 ms overall
17-03-17 18:12:14.448 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 18:12:14.448 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 15 at Y-position 70.68896484375, Z-Position -0.167367857525251. ------
17-03-17 18:12:14.448 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:12:14.448 -07 000000608 INF: Y Motor: MoveYZ optimized starting. Moving Y to 71.5326 mm, moving Z to -0.17405 mm
17-03-17 18:12:14.448 -07 000000608 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:12:14.458 -07 000000551 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:12:14.458 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 18:12:14.458 -07 000000501 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:12:14.458 -07 000000012 INF: Z Motor: Entering MoveAbsStepped (DAC = 38021, sync = True, waitForSettling = False)
17-03-17 18:12:14.458 -07 000000012 INF: Z Motor: Moving to -0.174049 mm, started at -0.167368 mm, distance = -6.68 um
17-03-17 18:12:14.458 -07 000000415 INF: Y Motor: Entering MoveAbsStepped (target = 114452 steps, sync = True, waitForSettling = True)
17-03-17 18:12:14.458 -07 000000415 INF: Y Motor: Moving to 71.5326 mm, started at 70.6890 mm, delta = 0.8436 mm
17-03-17 18:12:14.468 -07 000000012 INF: FPGA: Xmit ZDACW 38021\n [Z Motor]
17-03-17 18:12:14.468 -07 000000551 INF: FPGA: Recv ZDACW
17-03-17 18:12:14.478 -07 000000012 INF: FPGA: 'ZDACW 38021' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-17 18:12:14.478 -07 000000415 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:12:14.478 -07 000000512 INF: FPGA: Recv YRDPOS 144772
17-03-17 18:12:14.488 -07 000000012 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:12:14.488 -07 000000415 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-17 18:12:14.488 -07 000000415 INF: Y Motor: Encoder = 144772 = motor step 113103.1 = 70.6895 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:12:14.488 -07 000000502 INF: FPGA: Recv ZDACR 38021
17-03-17 18:12:14.488 -07 000000415 INF: Y Motor: Last commanded position = 70.7026 mm (113124.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:12:14.488 -07 000000415 INF: Y Motor: Moving 1349 steps-28
17-03-17 18:12:14.498 -07 000000012 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 18:12:14.498 -07 000000012 INF: Z Motor: MoveAbsStepped took 34 ms (did NOT wait for settling yet))
17-03-17 18:12:14.498 -07 000000415 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:12:14.658 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 395 ms.
17-03-17 18:12:14.658 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 18:12:14.658 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:12:14.658 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 400 ms.
17-03-17 18:12:14.658 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-17 18:12:14.658 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:12:14.658 -07 000000459 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:12:14.658 -07 000000501 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 198 ms to get response, and 203 ms overall
17-03-17 18:12:14.668 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 18:12:14.668 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 408 ms.
17-03-17 18:12:14.668 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:12:14.678 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-17 18:12:14.868 -07 000000502 INF: FPGA: Recv YMVTILE
17-03-17 18:12:14.868 -07 000000415 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 383 ms overall
17-03-17 18:12:14.908 -07 000000415 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:12:14.908 -07 000000502 INF: FPGA: Recv YRDPOS 146472
17-03-17 18:12:14.918 -07 000000415 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:14.918 -07 000000415 INF: Y Motor: Encoder = 146472 = motor step 114431.3 = 71.5195 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:12:14.918 -07 000000415 INF: Y Motor: Position error before settling (table move) = -27 encoder counts (-0.013 mm)
17-03-17 18:12:14.918 -07 000000415 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 383 ms, distance = 0.844 mm, average velocity = 2.203 mm/sec
17-03-17 18:12:15.028 -07 000000382 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 10, FrontChillerTemperature: 3.996267,
17-03-17 18:12:15.868 -07 000000415 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:12:15.868 -07 000000486 INF: FPGA: Recv YRDPOS 146472
17-03-17 18:12:15.878 -07 000000415 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:15.878 -07 000000415 INF: Y Motor: Encoder = 146472 = motor step 114431.3 = 71.5195 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:12:15.898 -07 000000415 INF: Y Motor: After move to 71.532608, error = -0.013077, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:12:15.898 -07 000000415 INF: Y Motor: Position error after settling (table move) = -27 encoder counts (-0.013 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:12:15.898 -07 000000415 INF: Y Motor: Moved to 71.5195 after 1434 ms (table move)
17-03-17 18:12:15.898 -07 000000608 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174049 mm (DAC = 38021)
17-03-17 18:12:15.898 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:15.898 -07 000000502 INF: FPGA: Recv ZSGSRD 36380
17-03-17 18:12:15.908 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:12:15.908 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:15.908 -07 000000459 INF: FPGA: Recv ZSGSRD 36376
17-03-17 18:12:15.918 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:15.918 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:15.918 -07 000000415 INF: FPGA: Recv ZSGSRD 36375
17-03-17 18:12:15.928 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:15.928 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:15.928 -07 000000415 INF: FPGA: Recv ZSGSRD 36382
17-03-17 18:12:15.938 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:15.938 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:15.938 -07 000000502 INF: FPGA: Recv ZSGSRD 36385
17-03-17 18:12:15.948 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:15.948 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:15.948 -07 000000415 INF: FPGA: Recv ZSGSRD 36390
17-03-17 18:12:15.958 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:15.958 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:15.958 -07 000000415 INF: FPGA: Recv ZSGSRD 36389
17-03-17 18:12:15.968 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:15.968 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:15.968 -07 000000486 INF: FPGA: Recv ZSGSRD 36385
17-03-17 18:12:15.978 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:15.978 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:15.978 -07 000000459 INF: FPGA: Recv ZSGSRD 36380
17-03-17 18:12:15.988 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:15.988 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:15.988 -07 000000502 INF: FPGA: Recv ZSGSRD 36376
17-03-17 18:12:15.998 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:15.998 -07 000000608 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:12:15.998 -07 000000415 INF: FPGA: Recv ZPIEZORD 32519
17-03-17 18:12:16.008 -07 000000608 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:16.008 -07 000000608 INF: Z Motor: Piezo is near 49.5 V (nominally 0 to 100 V), expect near 58.0 V, since DAC is at 5.802 V. Piezo Error = -8.5 V.
17-03-17 18:12:16.008 -07 000000608 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.0 um, Read 10 ADC samples: Avg = 36382 (-173.2 uncal um), Error = 0.9 uncal um, Median = 36381 (-173.2 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 36375 (-173.1 uncal um), Max = 36390 (-173.2 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 18:12:16.008 -07 000000608 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36382, posNoise = 8, negNoise = 7
17-03-17 18:12:16.008 -07 000000608 INF: Z Motor: After move to -0.174049, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:12:16.008 -07 000000608 INF: Z Motor: Settle wait time = 1438 ms, measure time = 106 ms (allowed 150 ms), total time = 1544 ms
17-03-17 18:12:16.008 -07 000000608 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-17 18:12:16.058 -07 000000608 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1600 ms
17-03-17 18:12:16.058 -07 000000608 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:12:16.058 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:12:16.058 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:12:16.058 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:12:16.058 -07 000000415 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:12:16.058 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:12:16.058 -07 000000608 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:12:16.058 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:12:16.058 -07 000000415 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:12:16.068 -07 000000415 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:12:16.068 -07 000000415 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:12:16.078 -07 000000415 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-17 18:12:16.078 -07 000000415 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-17 18:12:16.078 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:12:16.128 -07 000000415 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:12:16.318 -07 000000608 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:12:16.318 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:12:16.328 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:12:16.328 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2281705520, 0x0, 559484976) start.
17-03-17 18:12:16.358 -07 000000415 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:12:16.358 -07 000000486 INF: FPGA: Recv CAMSNAP
17-03-17 18:12:16.368 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 279 ms to get response, and 284 ms overall
17-03-17 18:12:16.448 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2281705520, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 18:12:16.448 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:12:16.458 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 18:12:16.458 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 18:12:16.468 -07 000000459 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:12:16.468 -07 000000415 INF: Autofocus start
17-03-17 18:12:16.468 -07 000000415 INF: MeasureProfile start
17-03-17 18:12:16.468 -07 000000608 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:12:16.478 -07 000000459 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 18:12:16.478 -07 000000459 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:12:16.478 -07 000000415 INF: MeasureProfile done
17-03-17 18:12:16.478 -07 000000415 INF: X=32  Z correction [um]=0.09220707
17-03-17 18:12:16.478 -07 000000415 INF: Autofocus finished
17-03-17 18:12:16.568 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:12:16.568 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 9. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=90, R2=99, Total=189. Warn if over 250 bubbles per interval.
17-03-17 18:12:16.678 -07 000000486 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:12:16.678 -07 000000459 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:12:16.678 -07 000000610 INF: ------------ Scan Snapping tile 15 at Y-position 71.51953125, Z-position -0.174049038152682. ----------
17-03-17 18:12:16.678 -07 000000610 INF: Cycle	10	Tile	15	Exposure Settings		A	392	G	188	T	188	C	392
17-03-17 18:12:16.688 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36554, sync = True, waitForSettling = True)
17-03-17 18:12:16.688 -07 000000610 INF: Z Motor: Moving to -0.167333 mm, started at -0.174049 mm, distance = 6.72 um
17-03-17 18:12:16.688 -07 000000610 INF: FPGA: Xmit ZDACW 36554\n [Z Motor]
17-03-17 18:12:16.688 -07 000000415 INF: FPGA: Recv ZDACW
17-03-17 18:12:16.698 -07 000000610 INF: FPGA: 'ZDACW 36554' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:16.698 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:12:16.698 -07 000000459 INF: FPGA: Recv ZDACR 36554
17-03-17 18:12:16.708 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:16.708 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:12:16.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:16.858 -07 000000459 INF: FPGA: Recv ZSGSRD 35343
17-03-17 18:12:16.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:12:16.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:16.868 -07 000000415 INF: FPGA: Recv ZSGSRD 35334
17-03-17 18:12:16.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:16.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:16.878 -07 000000486 INF: FPGA: Recv ZSGSRD 35343
17-03-17 18:12:16.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:16.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:16.888 -07 000000608 INF: FPGA: Recv ZSGSRD 35342
17-03-17 18:12:16.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:16.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:16.898 -07 000000459 INF: FPGA: Recv ZSGSRD 35336
17-03-17 18:12:16.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:16.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:16.908 -07 000000608 INF: FPGA: Recv ZSGSRD 35344
17-03-17 18:12:16.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:16.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:16.918 -07 000000608 INF: FPGA: Recv ZSGSRD 35337
17-03-17 18:12:16.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:16.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:16.928 -07 000000415 INF: FPGA: Recv ZSGSRD 35337
17-03-17 18:12:16.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:16.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:16.938 -07 000000486 INF: FPGA: Recv ZSGSRD 35336
17-03-17 18:12:16.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:16.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:16.948 -07 000000415 INF: FPGA: Recv ZSGSRD 35335
17-03-17 18:12:16.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:16.958 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:12:16.958 -07 000000618 INF: FPGA: Recv ZPIEZORD 31084
17-03-17 18:12:16.968 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:16.968 -07 000000610 INF: Z Motor: Piezo is near 46.4 V (nominally 0 to 100 V), expect near 55.8 V, since DAC is at 5.578 V. Piezo Error = -9.4 V.
17-03-17 18:12:16.968 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.3 um, Read 10 ADC samples: Avg = 35339 (-166.5 uncal um), Error = 0.9 uncal um, Median = 35337 (-166.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35334 (-166.4 uncal um), Max = 35344 (-166.5 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 18:12:16.968 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35339, posNoise = 5, negNoise = 5
17-03-17 18:12:16.968 -07 000000610 INF: Z Motor: After move to -0.167333, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:12:16.968 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 18:12:16.968 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:12:16.968 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:12:16.968 -07 000000459 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:12:16.968 -07 000000608 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:12:16.968 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:12:16.968 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:12:16.968 -07 000000415 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:12:16.968 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:12:16.968 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 18:12:16.968 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:12:16.968 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 18:12:16.968 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:12:16.978 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 18:12:16.978 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:12:16.978 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-17 18:12:16.978 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:12:16.988 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 18:12:16.988 -07 000000415 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 18:12:16.988 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 18:12:16.988 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 18:12:16.998 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 392 392 188 188 36731 150\n [Camera]
17-03-17 18:12:17.198 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:12:17.588 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 584
17-03-17 18:12:17.588 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 584
17-03-17 18:12:17.588 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:12:17.588 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:12:17.588 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 2468220576, 0x0, 391868352) start.
17-03-17 18:12:17.588 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 584
17-03-17 18:12:17.588 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 584
17-03-17 18:12:17.588 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:12:17.588 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:12:17.588 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 2503642840, 0x0, 418435064) start.
17-03-17 18:12:17.778 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36731 777
17-03-17 18:12:17.928 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP turning grn on 927
17-03-17 18:12:17.988 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 2468220576, 0x0, 391868352) end. Duration was 403 ms.
17-03-17 18:12:17.988 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 18:12:17.988 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:12:17.988 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 2503642840, 0x0, 418435064) end. Duration was 403 ms.
17-03-17 18:12:17.998 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-17 18:12:17.998 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:12:17.998 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:12:17.998 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-17 18:12:17.998 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:12:18.008 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-17 18:12:18.118 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1115
17-03-17 18:12:18.118 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1115
17-03-17 18:12:18.118 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:12:18.118 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:12:18.118 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 2371631432, 0x0, 391868352) start.
17-03-17 18:12:18.118 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1115
17-03-17 18:12:18.118 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1115
17-03-17 18:12:18.118 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:12:18.118 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:12:18.118 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 1056706608, 0x0, 418435064) start.
17-03-17 18:12:18.308 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP 1307
17-03-17 18:12:18.308 -07 000000459 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:12:18.308 -07 000000610 INF: FPGA: 'CAMDBLSNAP 392 392 188 188 36731 150' command took 2 ms to send, 1305 ms to get response, and 1314 ms overall
17-03-17 18:12:18.308 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 18:12:18.308 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 16 at Y-position 71.51953125, Z-Position -0.167348584888825. ------
17-03-17 18:12:18.318 -07 000000618 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:12:18.318 -07 000000502 INF: Y Motor: MoveYZ optimized starting. Moving Y to 72.3626 mm, moving Z to -0.17336 mm
17-03-17 18:12:18.318 -07 000000502 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:12:18.318 -07 000000433 INF: Z Motor: Entering MoveAbsStepped (DAC = 37870, sync = True, waitForSettling = False)
17-03-17 18:12:18.318 -07 000000433 INF: Z Motor: Moving to -0.173358 mm, started at -0.167349 mm, distance = -6.01 um
17-03-17 18:12:18.318 -07 000000486 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:12:18.318 -07 000000627 INF: Y Motor: Entering MoveAbsStepped (target = 115780 steps, sync = True, waitForSettling = True)
17-03-17 18:12:18.318 -07 000000627 INF: Y Motor: Moving to 72.3626 mm, started at 71.5195 mm, delta = 0.8431 mm
17-03-17 18:12:18.328 -07 000000618 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:12:18.328 -07 000000627 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:12:18.328 -07 000000480 INF: FPGA: Recv YRDPOS 146472
17-03-17 18:12:18.338 -07 000000627 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-17 18:12:18.338 -07 000000433 INF: FPGA: Xmit ZDACW 37870\n [Z Motor]
17-03-17 18:12:18.338 -07 000000627 INF: Y Motor: Encoder = 146472 = motor step 114431.3 = 71.5195 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:12:18.338 -07 000000627 INF: Y Motor: Last commanded position = 71.5326 mm (114452.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:12:18.338 -07 000000627 INF: Y Motor: Moving 1349 steps-27
17-03-17 18:12:18.338 -07 000000459 INF: FPGA: Recv ZDACW
17-03-17 18:12:18.348 -07 000000618 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:12:18.348 -07 000000433 INF: FPGA: 'ZDACW 37870' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-17 18:12:18.358 -07 000000627 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:12:18.368 -07 000000433 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:12:18.368 -07 000000480 INF: FPGA: Recv ZDACR 37870
17-03-17 18:12:18.378 -07 000000433 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:12:18.378 -07 000000433 INF: Z Motor: MoveAbsStepped took 54 ms (did NOT wait for settling yet))
17-03-17 18:12:18.508 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 2371631432, 0x0, 391868352) end. Duration was 393 ms.
17-03-17 18:12:18.508 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-17 18:12:18.508 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:12:18.518 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 9 ms.
17-03-17 18:12:18.518 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 18:12:18.528 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 1056706608, 0x0, 418435064) end. Duration was 402 ms.
17-03-17 18:12:18.528 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-17 18:12:18.528 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:12:18.528 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:12:18.538 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-17 18:12:18.548 -07 000000480 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:12:18.548 -07 000000618 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 18:12:18.728 -07 000000608 INF: FPGA: Recv YMVTILE
17-03-17 18:12:18.728 -07 000000627 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 18:12:18.768 -07 000000627 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:12:18.768 -07 000000551 INF: FPGA: Recv YRDPOS 148173
17-03-17 18:12:18.778 -07 000000627 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:12:18.778 -07 000000627 INF: Y Motor: Encoder = 148173 = motor step 115760.2 = 72.3501 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:12:18.778 -07 000000627 INF: Y Motor: Position error before settling (table move) = -26 encoder counts (-0.013 mm)
17-03-17 18:12:18.778 -07 000000627 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.843 mm, average velocity = 2.124 mm/sec
17-03-17 18:12:19.728 -07 000000627 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:12:19.728 -07 000000541 INF: FPGA: Recv YRDPOS 148173
17-03-17 18:12:19.738 -07 000000627 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:12:19.738 -07 000000627 INF: Y Motor: Encoder = 148173 = motor step 115760.2 = 72.3501 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:12:19.758 -07 000000627 INF: Y Motor: After move to 72.362610, error = -0.012512, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:12:19.758 -07 000000627 INF: Y Motor: Position error after settling (table move) = -26 encoder counts (-0.013 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:12:19.758 -07 000000627 INF: Y Motor: Moved to 72.3501 after 1434 ms (table move)
17-03-17 18:12:19.758 -07 000000502 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173358 mm (DAC = 37870)
17-03-17 18:12:19.758 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:19.758 -07 000000415 INF: FPGA: Recv ZSGSRD 36283
17-03-17 18:12:19.768 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 18:12:19.768 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:19.768 -07 000000415 INF: FPGA: Recv ZSGSRD 36279
17-03-17 18:12:19.778 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:19.778 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:19.778 -07 000000480 INF: FPGA: Recv ZSGSRD 36274
17-03-17 18:12:19.788 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:19.788 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:19.788 -07 000000480 INF: FPGA: Recv ZSGSRD 36267
17-03-17 18:12:19.798 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:19.798 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:19.798 -07 000000480 INF: FPGA: Recv ZSGSRD 36280
17-03-17 18:12:19.808 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:19.808 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:19.808 -07 000000480 INF: FPGA: Recv ZSGSRD 36278
17-03-17 18:12:19.818 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:19.818 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:19.818 -07 000000627 INF: FPGA: Recv ZSGSRD 36281
17-03-17 18:12:19.828 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:19.828 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:19.828 -07 000000480 INF: FPGA: Recv ZSGSRD 36277
17-03-17 18:12:19.838 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:19.838 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:19.838 -07 000000627 INF: FPGA: Recv ZSGSRD 36275
17-03-17 18:12:19.848 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:19.848 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:19.848 -07 000000480 INF: FPGA: Recv ZSGSRD 36279
17-03-17 18:12:19.858 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:19.858 -07 000000502 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:12:19.858 -07 000000480 INF: FPGA: Recv ZPIEZORD 32363
17-03-17 18:12:19.868 -07 000000502 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:19.868 -07 000000502 INF: Z Motor: Piezo is near 49.1 V (nominally 0 to 100 V), expect near 57.8 V, since DAC is at 5.779 V. Piezo Error = -8.7 V.
17-03-17 18:12:19.868 -07 000000502 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.4 um, Read 10 ADC samples: Avg = 36277 (-172.5 uncal um), Error = 0.9 uncal um, Median = 36278 (-172.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 36267 (-172.4 uncal um), Max = 36283 (-172.5 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-17 18:12:19.868 -07 000000502 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36277, posNoise = 6, negNoise = 10
17-03-17 18:12:19.868 -07 000000502 INF: Z Motor: After move to -0.173358, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:12:19.868 -07 000000502 INF: Z Motor: Settle wait time = 1438 ms, measure time = 106 ms (allowed 150 ms), total time = 1544 ms
17-03-17 18:12:19.868 -07 000000502 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-17 18:12:19.918 -07 000000502 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1596 ms
17-03-17 18:12:19.918 -07 000000502 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:12:19.918 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:12:19.918 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:12:19.918 -07 000000486 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:12:19.918 -07 000000627 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:12:19.918 -07 000000415 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:12:19.918 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:12:19.918 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:12:19.918 -07 000000415 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:12:19.928 -07 000000415 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:12:19.928 -07 000000415 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:12:19.938 -07 000000415 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 18:12:19.938 -07 000000415 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-17 18:12:19.938 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:12:19.988 -07 000000486 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:12:20.188 -07 000000502 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:12:20.188 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:12:20.188 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:12:20.188 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2539065104, 0x0, 559484976) start.
17-03-17 18:12:20.228 -07 000000459 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:12:20.228 -07 000000502 INF: FPGA: Recv CAMSNAP
17-03-17 18:12:20.228 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 2 ms to send, 282 ms to get response, and 285 ms overall
17-03-17 18:12:20.308 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2539065104, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 18:12:20.318 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:12:20.318 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 18:12:20.318 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 18:12:20.328 -07 000000541 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:12:20.328 -07 000000415 INF: Autofocus start
17-03-17 18:12:20.328 -07 000000415 INF: MeasureProfile start
17-03-17 18:12:20.328 -07 000000627 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:12:20.338 -07 000000541 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:12:20.338 -07 000000541 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:12:20.338 -07 000000415 INF: MeasureProfile done
17-03-17 18:12:20.338 -07 000000415 INF: X=0  Z correction [um]=-0.0713522
17-03-17 18:12:20.338 -07 000000415 INF: Autofocus finished
17-03-17 18:12:20.398 -07 000000433 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 10, FrontChillerTemperature: 3.997626,
17-03-17 18:12:20.538 -07 000000433 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:12:20.538 -07 000000541 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:12:20.538 -07 000000610 INF: ------------ Scan Snapping tile 16 at Y-position 72.35009765625, Z-position -0.173374495877797. ----------
17-03-17 18:12:20.538 -07 000000610 INF: Cycle	10	Tile	16	Exposure Settings		A	392	G	188	T	188	C	392
17-03-17 18:12:20.548 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36367, sync = True, waitForSettling = True)
17-03-17 18:12:20.548 -07 000000610 INF: Z Motor: Moving to -0.166477 mm, started at -0.173374 mm, distance = 6.90 um
17-03-17 18:12:20.548 -07 000000610 INF: FPGA: Xmit ZDACW 36367\n [Z Motor]
17-03-17 18:12:20.548 -07 000000541 INF: FPGA: Recv ZDACW
17-03-17 18:12:20.558 -07 000000610 INF: FPGA: 'ZDACW 36367' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:20.558 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:12:20.558 -07 000000459 INF: FPGA: Recv ZDACR 36367
17-03-17 18:12:20.568 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:20.568 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:12:20.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:20.728 -07 000000627 INF: FPGA: Recv ZSGSRD 35203
17-03-17 18:12:20.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 18:12:20.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:20.738 -07 000000433 INF: FPGA: Recv ZSGSRD 35206
17-03-17 18:12:20.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:20.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:20.758 -07 000000459 INF: FPGA: Recv ZSGSRD 35204
17-03-17 18:12:20.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 18:12:20.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:20.768 -07 000000627 INF: FPGA: Recv ZSGSRD 35204
17-03-17 18:12:20.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:20.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:20.798 -07 000000627 INF: FPGA: Recv ZSGSRD 35199
17-03-17 18:12:20.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:12:20.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:20.808 -07 000000459 INF: FPGA: Recv ZSGSRD 35203
17-03-17 18:12:20.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:12:20.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:20.828 -07 000000541 INF: FPGA: Recv ZSGSRD 35207
17-03-17 18:12:20.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 18:12:20.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:20.838 -07 000000627 INF: FPGA: Recv ZSGSRD 35202
17-03-17 18:12:20.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:20.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:20.848 -07 000000627 INF: FPGA: Recv ZSGSRD 35202
17-03-17 18:12:20.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:20.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:20.858 -07 000000433 INF: FPGA: Recv ZSGSRD 35211
17-03-17 18:12:20.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:20.868 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:12:20.868 -07 000000433 INF: FPGA: Recv ZPIEZORD 30935
17-03-17 18:12:20.878 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:20.878 -07 000000610 INF: Z Motor: Piezo is near 46.1 V (nominally 0 to 100 V), expect near 55.5 V, since DAC is at 5.549 V. Piezo Error = -9.4 V.
17-03-17 18:12:20.878 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.5 um, Read 10 ADC samples: Avg = 35204 (-165.6 uncal um), Error = 0.9 uncal um, Median = 35204 (-165.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35199 (-165.6 uncal um), Max = 35211 (-165.7 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 18:12:20.878 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35204, posNoise = 7, negNoise = 5
17-03-17 18:12:20.878 -07 000000610 INF: Z Motor: After move to -0.166477, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:12:20.878 -07 000000610 INF: Z Motor: MoveAbsStepped took 331 ms)
17-03-17 18:12:20.878 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:12:20.878 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:12:20.878 -07 000000541 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:12:20.878 -07 000000433 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:12:20.878 -07 000000627 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:12:20.878 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:12:20.878 -07 000000459 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:12:20.878 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:12:20.878 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 18:12:20.878 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:12:20.878 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:12:20.878 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:12:20.878 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 18:12:20.878 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:12:20.888 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 18:12:20.888 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:12:20.898 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 13 ms.
17-03-17 18:12:20.898 -07 000000627 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 18:12:20.898 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 13 ms.
17-03-17 18:12:20.898 -07 000000459 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 19 ms.
17-03-17 18:12:20.898 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 392 392 188 188 36543 150\n [Camera]
17-03-17 18:12:21.098 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:12:21.488 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 584
17-03-17 18:12:21.488 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 584
17-03-17 18:12:21.498 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:12:21.498 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:12:21.498 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 1092128872, 0x0, 391868352) start.
17-03-17 18:12:21.498 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 584
17-03-17 18:12:21.498 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 584
17-03-17 18:12:21.498 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:12:21.498 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:12:21.498 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 1127551136, 0x0, 418435064) start.
17-03-17 18:12:21.568 -07 000000433 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:12:21.568 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 9. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=90, R2=99, Total=189. Warn if over 250 bubbles per interval.
17-03-17 18:12:21.688 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36543 777
17-03-17 18:12:21.838 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning grn on 927
17-03-17 18:12:21.878 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 1127551136, 0x0, 418435064) end. Duration was 381 ms.
17-03-17 18:12:21.878 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 381 ms.
17-03-17 18:12:21.878 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:12:21.878 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:12:21.888 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 1092128872, 0x0, 391868352) end. Duration was 391 ms.
17-03-17 18:12:21.888 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-17 18:12:21.888 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:12:21.888 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 18:12:21.888 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:12:21.888 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 18:12:22.028 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1115
17-03-17 18:12:22.028 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1115
17-03-17 18:12:22.028 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:12:22.028 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:12:22.028 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 18:12:22.028 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1115
17-03-17 18:12:22.028 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1115
17-03-17 18:12:22.028 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:12:22.028 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:12:22.028 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-17 18:12:22.218 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP 1307
17-03-17 18:12:22.218 -07 000000382 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:12:22.218 -07 000000610 INF: FPGA: 'CAMDBLSNAP 392 392 188 188 36543 150' command took 2 ms to send, 1312 ms to get response, and 1314 ms overall
17-03-17 18:12:22.218 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 18:12:22.218 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 17 at Y-position 72.35009765625, Z-Position -0.166481316249688. ------
17-03-17 18:12:22.218 -07 000000459 INF: Y Motor: MoveYZ optimized starting. Moving Y to 73.1926 mm, moving Z to -0.17300 mm
17-03-17 18:12:22.218 -07 000000459 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:12:22.218 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:12:22.228 -07 000000593 INF: Y Motor: Entering MoveAbsStepped (target = 117108 steps, sync = True, waitForSettling = True)
17-03-17 18:12:22.228 -07 000000593 INF: Y Motor: Moving to 73.1926 mm, started at 72.3501 mm, delta = 0.8425 mm
17-03-17 18:12:22.228 -07 000000593 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:12:22.228 -07 000000382 INF: Z Motor: Entering MoveAbsStepped (DAC = 37792, sync = True, waitForSettling = False)
17-03-17 18:12:22.228 -07 000000382 INF: Z Motor: Moving to -0.173001 mm, started at -0.166481 mm, distance = -6.52 um
17-03-17 18:12:22.228 -07 000000541 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:12:22.228 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 18:12:22.228 -07 000000541 INF: FPGA: Recv YRDPOS 148173
17-03-17 18:12:22.238 -07 000000593 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:12:22.238 -07 000000502 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:12:22.238 -07 000000593 INF: Y Motor: Encoder = 148173 = motor step 115760.2 = 72.3501 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:12:22.238 -07 000000593 INF: Y Motor: Last commanded position = 72.3626 mm (115780.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:12:22.238 -07 000000593 INF: Y Motor: Moving 1348 steps-26
17-03-17 18:12:22.248 -07 000000382 INF: FPGA: Xmit ZDACW 37792\n [Z Motor]
17-03-17 18:12:22.248 -07 000000608 INF: FPGA: Recv ZDACW
17-03-17 18:12:22.258 -07 000000593 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:12:22.318 -07 000000382 INF: FPGA: 'ZDACW 37792' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-17 18:12:22.328 -07 000000382 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:12:22.328 -07 000000433 INF: FPGA: Recv ZDACR 37792
17-03-17 18:12:22.338 -07 000000382 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 18:12:22.338 -07 000000382 INF: Z Motor: MoveAbsStepped took 108 ms (did NOT wait for settling yet))
17-03-17 18:12:22.428 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 402 ms.
17-03-17 18:12:22.428 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-17 18:12:22.428 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:12:22.428 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 400 ms.
17-03-17 18:12:22.428 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 18:12:22.428 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:12:22.438 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:12:22.438 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 18:12:22.438 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 410 ms.
17-03-17 18:12:22.438 -07 000000541 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:12:22.438 -07 000000502 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 210 ms overall
17-03-17 18:12:22.438 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-17 18:12:22.698 -07 000000608 INF: FPGA: Recv YMVTILE
17-03-17 18:12:22.698 -07 000000593 INF: FPGA: 'YMVTILE 1327' command took 68 ms to send, 376 ms to get response, and 464 ms overall
17-03-17 18:12:22.738 -07 000000593 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:12:22.738 -07 000000512 INF: FPGA: Recv YRDPOS 149865
17-03-17 18:12:22.748 -07 000000593 INF: FPGA: 'YRDPOS' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:22.748 -07 000000593 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:12:22.748 -07 000000593 INF: Y Motor: Position error before settling (table move) = -33 encoder counts (-0.016 mm)
17-03-17 18:12:22.748 -07 000000593 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 466 ms, distance = 0.843 mm, average velocity = 1.808 mm/sec
17-03-17 18:12:23.698 -07 000000593 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:12:23.818 -07 000000541 INF: FPGA: Recv YRDPOS 149866
17-03-17 18:12:23.828 -07 000000593 INF: FPGA: 'YRDPOS' command took 122 ms to send, 0 ms to get response, and 129 ms overall
17-03-17 18:12:23.828 -07 000000593 INF: Y Motor: Encoder = 149866 = motor step 117082.8 = 73.1768 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:12:23.848 -07 000000593 INF: Y Motor: After move to 73.192604, error = -0.015846, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:12:23.848 -07 000000593 INF: Y Motor: Position error after settling (table move) = -32 encoder counts (-0.016 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 18:12:23.848 -07 000000593 INF: Y Motor: Moved to 73.1768 after 1619 ms (table move)
17-03-17 18:12:23.848 -07 000000459 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173001 mm (DAC = 37792)
17-03-17 18:12:23.848 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:23.848 -07 000000618 INF: FPGA: Recv ZSGSRD 36229
17-03-17 18:12:23.858 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:12:23.858 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:23.858 -07 000000551 INF: FPGA: Recv ZSGSRD 36225
17-03-17 18:12:23.868 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:23.868 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:23.868 -07 000000618 INF: FPGA: Recv ZSGSRD 36220
17-03-17 18:12:23.878 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:23.878 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:23.878 -07 000000502 INF: FPGA: Recv ZSGSRD 36218
17-03-17 18:12:23.888 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:12:23.888 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:23.888 -07 000000512 INF: FPGA: Recv ZSGSRD 36224
17-03-17 18:12:23.898 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:23.898 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:23.898 -07 000000486 INF: FPGA: Recv ZSGSRD 36226
17-03-17 18:12:23.908 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:23.908 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:23.908 -07 000000512 INF: FPGA: Recv ZSGSRD 36218
17-03-17 18:12:23.918 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:23.918 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:23.918 -07 000000541 INF: FPGA: Recv ZSGSRD 36212
17-03-17 18:12:23.928 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:23.928 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:23.928 -07 000000382 INF: FPGA: Recv ZSGSRD 36220
17-03-17 18:12:23.938 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:23.938 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:23.938 -07 000000486 INF: FPGA: Recv ZSGSRD 36226
17-03-17 18:12:23.948 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:23.948 -07 000000459 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:12:23.948 -07 000000512 INF: FPGA: Recv ZPIEZORD 32307
17-03-17 18:12:23.958 -07 000000459 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:23.958 -07 000000459 INF: Z Motor: Piezo is near 49.0 V (nominally 0 to 100 V), expect near 57.7 V, since DAC is at 5.767 V. Piezo Error = -8.7 V.
17-03-17 18:12:23.958 -07 000000459 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.0 um, Read 10 ADC samples: Avg = 36222 (-172.1 uncal um), Error = 0.9 uncal um, Median = 36222 (-172.1 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 36212 (-172.1 uncal um), Max = 36229 (-172.2 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-17 18:12:23.958 -07 000000459 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36222, posNoise = 7, negNoise = 10
17-03-17 18:12:23.958 -07 000000459 INF: Z Motor: After move to -0.173001, error = -0.000020, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:12:23.958 -07 000000459 INF: Z Motor: Settle wait time = 1621 ms, measure time = 107 ms (allowed 150 ms), total time = 1728 ms
17-03-17 18:12:23.958 -07 000000459 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-17 18:12:24.008 -07 000000459 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1781 ms
17-03-17 18:12:24.008 -07 000000459 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:12:24.008 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:12:24.008 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:12:24.008 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:12:24.008 -07 000000608 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:12:24.008 -07 000000551 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:12:24.008 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:12:24.008 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 18:12:24.008 -07 000000551 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:12:24.018 -07 000000551 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:12:24.018 -07 000000551 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:12:24.028 -07 000000551 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-17 18:12:24.028 -07 000000551 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 18:12:24.028 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:12:24.078 -07 000000501 INF: FPGA: Recv @CAMSNAP turning led on 43
17-03-17 18:12:24.278 -07 000000608 INF: FPGA: Recv @CAMSNAP img rdy 243
17-03-17 18:12:24.278 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 243
17-03-17 18:12:24.278 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:12:24.278 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1179848464, 0x0, 559484976) start.
17-03-17 18:12:24.308 -07 000000502 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:12:24.308 -07 000000382 INF: FPGA: Recv CAMSNAP
17-03-17 18:12:24.318 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 279 ms to get response, and 285 ms overall
17-03-17 18:12:24.408 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1179848464, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 18:12:24.408 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:12:24.408 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 18:12:24.408 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 18:12:24.418 -07 000000551 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:12:24.418 -07 000000459 INF: Autofocus start
17-03-17 18:12:24.418 -07 000000459 INF: MeasureProfile start
17-03-17 18:12:24.418 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:12:24.428 -07 000000551 INF: FPGA: 'FOCMRRCUR 80' command took 2 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:12:24.428 -07 000000551 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:12:24.428 -07 000000459 INF: MeasureProfile done
17-03-17 18:12:24.428 -07 000000459 INF: X=32  Z correction [um]=0.09220707
17-03-17 18:12:24.428 -07 000000459 INF: Autofocus finished
17-03-17 18:12:24.628 -07 000000486 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:12:24.628 -07 000000551 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:12:24.628 -07 000000610 INF: ------------ Scan Snapping tile 17 at Y-position 73.1767578125, Z-position -0.17302116421. ----------
17-03-17 18:12:24.628 -07 000000610 INF: Cycle	10	Tile	17	Exposure Settings		A	392	G	188	T	188	C	392
17-03-17 18:12:24.638 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36325, sync = True, waitForSettling = True)
17-03-17 18:12:24.638 -07 000000610 INF: Z Motor: Moving to -0.166285 mm, started at -0.173021 mm, distance = 6.74 um
17-03-17 18:12:24.638 -07 000000610 INF: FPGA: Xmit ZDACW 36325\n [Z Motor]
17-03-17 18:12:24.638 -07 000000486 INF: FPGA: Recv ZDACW
17-03-17 18:12:24.648 -07 000000610 INF: FPGA: 'ZDACW 36325' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:12:24.648 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:12:24.648 -07 000000486 INF: FPGA: Recv ZDACR 36325
17-03-17 18:12:24.658 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:24.658 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:12:24.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:24.808 -07 000000627 INF: FPGA: Recv ZSGSRD 35177
17-03-17 18:12:24.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:12:24.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:24.818 -07 000000486 INF: FPGA: Recv ZSGSRD 35175
17-03-17 18:12:24.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:24.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:24.828 -07 000000486 INF: FPGA: Recv ZSGSRD 35172
17-03-17 18:12:24.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:24.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:24.838 -07 000000627 INF: FPGA: Recv ZSGSRD 35173
17-03-17 18:12:24.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:24.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:24.848 -07 000000551 INF: FPGA: Recv ZSGSRD 35169
17-03-17 18:12:24.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:24.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:24.858 -07 000000627 INF: FPGA: Recv ZSGSRD 35178
17-03-17 18:12:24.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:24.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:24.868 -07 000000486 INF: FPGA: Recv ZSGSRD 35178
17-03-17 18:12:24.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:24.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:24.878 -07 000000627 INF: FPGA: Recv ZSGSRD 35176
17-03-17 18:12:24.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:24.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:24.888 -07 000000486 INF: FPGA: Recv ZSGSRD 35176
17-03-17 18:12:24.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:24.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:24.898 -07 000000551 INF: FPGA: Recv ZSGSRD 35175
17-03-17 18:12:24.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:24.908 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:12:24.908 -07 000000627 INF: FPGA: Recv ZPIEZORD 30900
17-03-17 18:12:24.918 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:24.918 -07 000000610 INF: Z Motor: Piezo is near 46.0 V (nominally 0 to 100 V), expect near 55.4 V, since DAC is at 5.543 V. Piezo Error = -9.4 V.
17-03-17 18:12:24.918 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.3 um, Read 10 ADC samples: Avg = 35175 (-165.4 uncal um), Error = 0.9 uncal um, Median = 35176 (-165.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35169 (-165.4 uncal um), Max = 35178 (-165.4 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 18:12:24.918 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35175, posNoise = 3, negNoise = 6
17-03-17 18:12:24.918 -07 000000610 INF: Z Motor: After move to -0.166285, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:12:24.918 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 18:12:24.918 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:12:24.918 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:12:24.918 -07 000000627 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:12:24.918 -07 000000551 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:12:24.918 -07 000000486 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:12:24.918 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:12:24.918 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:12:24.918 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:12:24.918 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-17 18:12:24.918 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:12:24.918 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:12:24.918 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:12:24.928 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 18:12:24.928 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:12:24.928 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 18:12:24.928 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:12:24.938 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 18:12:24.938 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 23 ms.
17-03-17 18:12:24.938 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 18:12:24.938 -07 000000486 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 23 ms.
17-03-17 18:12:24.948 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 392 392 188 188 36501 150\n [Camera]
17-03-17 18:12:25.148 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:12:25.538 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 584
17-03-17 18:12:25.538 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 584
17-03-17 18:12:25.538 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:12:25.538 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:12:25.538 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 1468825872, 0x0, 391868352) start.
17-03-17 18:12:25.538 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 584
17-03-17 18:12:25.538 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 584
17-03-17 18:12:25.538 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:12:25.538 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:12:25.538 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 18:12:25.728 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36501 777
17-03-17 18:12:25.768 -07 000000551 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 10, FrontChillerTemperature: 3.988112,
17-03-17 18:12:25.878 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning grn on 927
17-03-17 18:12:25.938 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 1468825872, 0x0, 391868352) end. Duration was 399 ms.
17-03-17 18:12:25.938 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 18:12:25.938 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:12:25.938 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 399 ms.
17-03-17 18:12:25.938 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 18:12:25.938 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:12:25.948 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 18:12:25.948 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-17 18:12:25.948 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:12:25.948 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-17 18:12:26.068 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1115
17-03-17 18:12:26.068 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1115
17-03-17 18:12:26.068 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:12:26.068 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:12:26.068 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-17 18:12:26.068 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1115
17-03-17 18:12:26.068 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1115
17-03-17 18:12:26.068 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:12:26.068 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:12:26.068 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) start.
17-03-17 18:12:26.258 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP 1307
17-03-17 18:12:26.258 -07 000000012 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:12:26.258 -07 000000610 INF: FPGA: 'CAMDBLSNAP 392 392 188 188 36501 150' command took 2 ms to send, 1305 ms to get response, and 1314 ms overall
17-03-17 18:12:26.258 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 18:12:26.258 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 18 at Y-position 73.1767578125, Z-Position -0.166295014097577. ------
17-03-17 18:12:26.268 -07 000000618 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:12:26.268 -07 000000486 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.0226 mm, moving Z to -0.17273 mm
17-03-17 18:12:26.268 -07 000000486 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:12:26.268 -07 000000433 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:12:26.268 -07 000000551 INF: Y Motor: Entering MoveAbsStepped (target = 118436 steps, sync = True, waitForSettling = True)
17-03-17 18:12:26.268 -07 000000551 INF: Y Motor: Moving to 74.0226 mm, started at 73.1768 mm, delta = 0.8458 mm
17-03-17 18:12:26.268 -07 000000627 INF: Z Motor: Entering MoveAbsStepped (DAC = 37732, sync = True, waitForSettling = False)
17-03-17 18:12:26.268 -07 000000627 INF: Z Motor: Moving to -0.172726 mm, started at -0.166295 mm, distance = -6.43 um
17-03-17 18:12:26.278 -07 000000618 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:26.278 -07 000000627 INF: FPGA: Xmit ZDACW 37732\n [Z Motor]
17-03-17 18:12:26.278 -07 000000541 INF: FPGA: Recv ZDACW
17-03-17 18:12:26.288 -07 000000627 INF: FPGA: 'ZDACW 37732' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-17 18:12:26.288 -07 000000551 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:12:26.288 -07 000000012 INF: FPGA: Recv YRDPOS 149866
17-03-17 18:12:26.298 -07 000000618 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:12:26.298 -07 000000551 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-17 18:12:26.298 -07 000000551 INF: Y Motor: Encoder = 149866 = motor step 117082.8 = 73.1768 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:12:26.298 -07 000000551 INF: Y Motor: Last commanded position = 73.1926 mm (117108.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:12:26.298 -07 000000551 INF: Y Motor: Moving 1353 steps-33
17-03-17 18:12:26.308 -07 000000627 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:12:26.308 -07 000000012 INF: FPGA: Recv ZDACR 37732
17-03-17 18:12:26.318 -07 000000551 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:12:26.318 -07 000000627 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:12:26.318 -07 000000627 INF: Z Motor: MoveAbsStepped took 44 ms (did NOT wait for settling yet))
17-03-17 18:12:26.468 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) end. Duration was 400 ms.
17-03-17 18:12:26.468 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 402 ms.
17-03-17 18:12:26.468 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 18:12:26.468 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:12:26.468 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 18:12:26.468 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:12:26.478 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:12:26.478 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-17 18:12:26.478 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 412 ms.
17-03-17 18:12:26.478 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-17 18:12:26.498 -07 000000382 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:12:26.498 -07 000000618 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 18:12:26.568 -07 000000433 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:12:26.568 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 9. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=90, R2=99, Total=189. Warn if over 250 bubbles per interval.
17-03-17 18:12:26.688 -07 000000012 INF: FPGA: Recv YMVTILE
17-03-17 18:12:26.688 -07 000000551 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 18:12:26.718 -07 000000551 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:12:26.728 -07 000000480 INF: FPGA: Recv YRDPOS 151570
17-03-17 18:12:26.728 -07 000000551 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 18:12:26.728 -07 000000551 INF: Y Motor: Encoder = 151570 = motor step 118414.1 = 74.0088 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:12:26.728 -07 000000551 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 18:12:26.728 -07 000000551 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.846 mm, average velocity = 2.125 mm/sec
17-03-17 18:12:27.678 -07 000000551 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:12:27.678 -07 000000382 INF: FPGA: Recv YRDPOS 151570
17-03-17 18:12:27.688 -07 000000551 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:27.688 -07 000000551 INF: Y Motor: Encoder = 151570 = motor step 118414.1 = 74.0088 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:12:27.698 -07 000000551 INF: Y Motor: After move to 74.022606, error = -0.013817, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:12:27.698 -07 000000551 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:12:27.698 -07 000000551 INF: Y Motor: Moved to 74.0088 after 1429 ms (table move)
17-03-17 18:12:27.698 -07 000000486 INF: Z Motor: EndOfMoveAbsStepped: target = -0.172726 mm (DAC = 37732)
17-03-17 18:12:27.698 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:27.708 -07 000000608 INF: FPGA: Recv ZSGSRD 36182
17-03-17 18:12:27.708 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 2 ms overall
17-03-17 18:12:27.708 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:27.708 -07 000000608 INF: FPGA: Recv ZSGSRD 36181
17-03-17 18:12:27.718 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:12:27.718 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:27.718 -07 000000382 INF: FPGA: Recv ZSGSRD 36172
17-03-17 18:12:27.728 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:27.728 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:27.728 -07 000000382 INF: FPGA: Recv ZSGSRD 36179
17-03-17 18:12:27.738 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:27.738 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:27.738 -07 000000627 INF: FPGA: Recv ZSGSRD 36178
17-03-17 18:12:27.748 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:27.748 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:27.748 -07 000000551 INF: FPGA: Recv ZSGSRD 36176
17-03-17 18:12:27.758 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:27.758 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:27.758 -07 000000012 INF: FPGA: Recv ZSGSRD 36184
17-03-17 18:12:27.768 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:27.768 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:27.768 -07 000000012 INF: FPGA: Recv ZSGSRD 36183
17-03-17 18:12:27.778 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:27.778 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:27.778 -07 000000551 INF: FPGA: Recv ZSGSRD 36176
17-03-17 18:12:27.788 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:27.788 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:27.788 -07 000000551 INF: FPGA: Recv ZSGSRD 36174
17-03-17 18:12:27.798 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:27.798 -07 000000486 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:12:27.798 -07 000000480 INF: FPGA: Recv ZPIEZORD 32246
17-03-17 18:12:27.808 -07 000000486 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:27.808 -07 000000486 INF: Z Motor: Piezo is near 48.9 V (nominally 0 to 100 V), expect near 57.6 V, since DAC is at 5.758 V. Piezo Error = -8.7 V.
17-03-17 18:12:27.808 -07 000000486 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.7 um, Read 10 ADC samples: Avg = 36178 (-171.9 uncal um), Error = 0.9 uncal um, Median = 36178 (-171.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 36172 (-171.8 uncal um), Max = 36184 (-171.9 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 18:12:27.808 -07 000000486 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36178, posNoise = 6, negNoise = 6
17-03-17 18:12:27.808 -07 000000486 INF: Z Motor: After move to -0.172726, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:12:27.808 -07 000000486 INF: Z Motor: Settle wait time = 1433 ms, measure time = 101 ms (allowed 150 ms), total time = 1534 ms
17-03-17 18:12:27.808 -07 000000486 INF: Z Motor: Waiting extra 49 ms after reading position to reach expected total of 150 ms
17-03-17 18:12:27.858 -07 000000486 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1590 ms
17-03-17 18:12:27.858 -07 000000486 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:12:27.858 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:12:27.858 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:12:27.858 -07 000000415 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:12:27.858 -07 000000627 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:12:27.858 -07 000000608 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:12:27.858 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:12:27.868 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:12:27.868 -07 000000608 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:12:27.868 -07 000000608 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:12:27.868 -07 000000608 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:12:27.878 -07 000000608 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-17 18:12:27.878 -07 000000608 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-17 18:12:27.878 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:12:27.928 -07 000000486 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:12:28.128 -07 000000480 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:12:28.128 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:12:28.128 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:12:28.128 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2253754584, 0x0, 559484976) start.
17-03-17 18:12:28.168 -07 000000551 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:12:28.168 -07 000000012 INF: FPGA: Recv CAMSNAP
17-03-17 18:12:28.168 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 282 ms to get response, and 286 ms overall
17-03-17 18:12:28.258 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2253754584, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 18:12:28.258 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:12:28.258 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 18:12:28.258 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 130 ms.
17-03-17 18:12:28.268 -07 000000382 INF: Autofocus start
17-03-17 18:12:28.268 -07 000000382 INF: MeasureProfile start
17-03-17 18:12:28.268 -07 000000551 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:12:28.268 -07 000000486 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:12:28.278 -07 000000551 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:12:28.278 -07 000000551 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:12:28.278 -07 000000382 INF: MeasureProfile done
17-03-17 18:12:28.278 -07 000000382 INF: X=-16  Z correction [um]=-0.1496812
17-03-17 18:12:28.278 -07 000000382 INF: Autofocus finished
17-03-17 18:12:28.478 -07 000000459 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:12:28.478 -07 000000551 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:12:28.478 -07 000000610 INF: ------------ Scan Snapping tile 18 at Y-position 74.0087890625, Z-position -0.172738498875763. ----------
17-03-17 18:12:28.478 -07 000000610 INF: Cycle	10	Tile	18	Exposure Settings		A	392	G	188	T	188	C	392
17-03-17 18:12:28.488 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36212, sync = True, waitForSettling = True)
17-03-17 18:12:28.488 -07 000000610 INF: Z Motor: Moving to -0.165768 mm, started at -0.172738 mm, distance = 6.97 um
17-03-17 18:12:28.488 -07 000000610 INF: FPGA: Xmit ZDACW 36212\n [Z Motor]
17-03-17 18:12:28.488 -07 000000608 INF: FPGA: Recv ZDACW
17-03-17 18:12:28.498 -07 000000610 INF: FPGA: 'ZDACW 36212' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:12:28.498 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:12:28.498 -07 000000608 INF: FPGA: Recv ZDACR 36212
17-03-17 18:12:28.508 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:28.508 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:12:28.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:28.658 -07 000000551 INF: FPGA: Recv ZSGSRD 35096
17-03-17 18:12:28.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:12:28.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:28.668 -07 000000551 INF: FPGA: Recv ZSGSRD 35095
17-03-17 18:12:28.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:28.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:28.678 -07 000000608 INF: FPGA: Recv ZSGSRD 35095
17-03-17 18:12:28.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:28.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:28.688 -07 000000551 INF: FPGA: Recv ZSGSRD 35087
17-03-17 18:12:28.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:28.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:28.698 -07 000000608 INF: FPGA: Recv ZSGSRD 35099
17-03-17 18:12:28.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:28.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:28.708 -07 000000551 INF: FPGA: Recv ZSGSRD 35098
17-03-17 18:12:28.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:28.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:28.718 -07 000000551 INF: FPGA: Recv ZSGSRD 35089
17-03-17 18:12:28.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:28.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:28.728 -07 000000608 INF: FPGA: Recv ZSGSRD 35095
17-03-17 18:12:28.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:28.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:28.738 -07 000000551 INF: FPGA: Recv ZSGSRD 35096
17-03-17 18:12:28.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:28.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:28.748 -07 000000618 INF: FPGA: Recv ZSGSRD 35100
17-03-17 18:12:28.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:28.758 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:12:28.758 -07 000000551 INF: FPGA: Recv ZPIEZORD 30809
17-03-17 18:12:28.768 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:28.768 -07 000000610 INF: Z Motor: Piezo is near 45.8 V (nominally 0 to 100 V), expect near 55.3 V, since DAC is at 5.526 V. Piezo Error = -9.4 V.
17-03-17 18:12:28.768 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -165.8 um, Read 10 ADC samples: Avg = 35095 (-164.9 uncal um), Error = 0.9 uncal um, Median = 35096 (-164.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 35087 (-164.9 uncal um), Max = 35100 (-164.9 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 18:12:28.768 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35095, posNoise = 5, negNoise = 8
17-03-17 18:12:28.768 -07 000000610 INF: Z Motor: After move to -0.165768, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:12:28.768 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 18:12:28.768 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:12:28.768 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:12:28.768 -07 000000608 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:12:28.768 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:12:28.768 -07 000000551 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:12:28.768 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:12:28.768 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:12:28.768 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:12:28.768 -07 000000551 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:12:28.768 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:12:28.778 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:12:28.778 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:12:28.778 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 18:12:28.778 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:12:28.778 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 18:12:28.778 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:12:28.788 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 18:12:28.788 -07 000000608 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 19 ms.
17-03-17 18:12:28.788 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms.
17-03-17 18:12:28.788 -07 000000551 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 19 ms.
17-03-17 18:12:28.798 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 392 392 188 188 36389 150\n [Camera]
17-03-17 18:12:28.998 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:12:29.388 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 585
17-03-17 18:12:29.388 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 585
17-03-17 18:12:29.388 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 585
17-03-17 18:12:29.388 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 585
17-03-17 18:12:29.388 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:12:29.388 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:12:29.388 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) start.
17-03-17 18:12:29.388 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:12:29.388 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:12:29.388 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) start.
17-03-17 18:12:29.578 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36389 777
17-03-17 18:12:29.728 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP turning grn on 927
17-03-17 18:12:29.768 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) end. Duration was 378 ms.
17-03-17 18:12:29.768 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-17 18:12:29.768 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:12:29.768 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) end. Duration was 377 ms.
17-03-17 18:12:29.768 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-17 18:12:29.768 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:12:29.778 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 18:12:29.778 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 18:12:29.778 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 18:12:29.778 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 18:12:29.918 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1115
17-03-17 18:12:29.918 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1115
17-03-17 18:12:29.918 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:12:30.048 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1115
17-03-17 18:12:30.048 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1115
17-03-17 18:12:30.048 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:12:30.048 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:12:30.048 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 2620985504, 0x0, 391868352) start.
17-03-17 18:12:30.058 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:12:30.058 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-17 18:12:30.108 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP 1307
17-03-17 18:12:30.108 -07 000000502 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:12:30.108 -07 000000610 INF: FPGA: 'CAMDBLSNAP 392 392 188 188 36389 150' command took 2 ms to send, 1306 ms to get response, and 1314 ms overall
17-03-17 18:12:30.108 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 18:12:30.108 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 19 at Y-position 74.0087890625, Z-Position -0.165781077126236. ------
17-03-17 18:12:30.118 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:12:30.118 -07 000000551 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.8526 mm, moving Z to -0.17212 mm
17-03-17 18:12:30.118 -07 000000551 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:12:30.118 -07 000000501 INF: Y Motor: Entering MoveAbsStepped (target = 119764 steps, sync = True, waitForSettling = True)
17-03-17 18:12:30.118 -07 000000501 INF: Y Motor: Moving to 74.8526 mm, started at 74.0088 mm, delta = 0.8438 mm
17-03-17 18:12:30.118 -07 000000480 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:12:30.118 -07 000000502 INF: Z Motor: Entering MoveAbsStepped (DAC = 37599, sync = True, waitForSettling = False)
17-03-17 18:12:30.118 -07 000000502 INF: Z Motor: Moving to -0.172117 mm, started at -0.165781 mm, distance = -6.34 um
17-03-17 18:12:30.128 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:12:30.128 -07 000000502 INF: FPGA: Xmit ZDACW 37599\n [Z Motor]
17-03-17 18:12:30.128 -07 000000480 INF: FPGA: Recv ZDACW
17-03-17 18:12:30.138 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:12:30.138 -07 000000502 INF: FPGA: 'ZDACW 37599' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-17 18:12:30.138 -07 000000415 INF: FPGA: Recv YRDPOS 151570
17-03-17 18:12:30.148 -07 000000512 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:12:30.148 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-17 18:12:30.148 -07 000000501 INF: Y Motor: Encoder = 151570 = motor step 118414.1 = 74.0088 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:12:30.148 -07 000000501 INF: Y Motor: Last commanded position = 74.0226 mm (118436.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:12:30.148 -07 000000501 INF: Y Motor: Moving 1350 steps-28
17-03-17 18:12:30.158 -07 000000502 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:12:30.158 -07 000000486 INF: FPGA: Recv ZDACR 37599
17-03-17 18:12:30.168 -07 000000502 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:12:30.168 -07 000000502 INF: Z Motor: MoveAbsStepped took 44 ms (did NOT wait for settling yet))
17-03-17 18:12:30.168 -07 000000501 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:12:30.348 -07 000000627 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:12:30.348 -07 000000512 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 18:12:30.448 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 393 ms.
17-03-17 18:12:30.448 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 18:12:30.448 -07 000000593 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:12:30.458 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 2620985504, 0x0, 391868352) end. Duration was 400 ms.
17-03-17 18:12:30.458 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 18:12:30.458 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:12:30.458 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:12:30.458 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:12:30.458 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 539 ms.
17-03-17 18:12:30.458 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-17 18:12:30.538 -07 000000486 INF: FPGA: Recv YMVTILE
17-03-17 18:12:30.538 -07 000000501 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 395 ms overall
17-03-17 18:12:30.558 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:12:30.568 -07 000000433 INF: FPGA: Recv YRDPOS 153257
17-03-17 18:12:30.568 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 18:12:30.568 -07 000000501 INF: Y Motor: Encoder = 153257 = motor step 119732.0 = 74.8325 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:12:30.568 -07 000000501 INF: Y Motor: Position error before settling (table move) = -41 encoder counts (-0.020 mm)
17-03-17 18:12:30.568 -07 000000501 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 396 ms, distance = 0.844 mm, average velocity = 2.131 mm/sec
17-03-17 18:12:31.248 -07 000000480 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 10, FrontChillerTemperature: 3.983999,
17-03-17 18:12:31.518 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:12:31.518 -07 000000541 INF: FPGA: Recv YRDPOS 153258
17-03-17 18:12:31.528 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:12:31.528 -07 000000501 INF: Y Motor: Encoder = 153258 = motor step 119732.8 = 74.8330 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:12:31.538 -07 000000501 INF: Y Motor: After move to 74.852608, error = -0.019600, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:12:31.538 -07 000000501 INF: Y Motor: Position error after settling (table move) = -40 encoder counts (-0.020 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 18:12:31.538 -07 000000501 INF: Y Motor: Moved to 74.8330 after 1420 ms (table move)
17-03-17 18:12:31.538 -07 000000551 INF: Z Motor: EndOfMoveAbsStepped: target = -0.172117 mm (DAC = 37599)
17-03-17 18:12:31.538 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:31.548 -07 000000486 INF: FPGA: Recv ZSGSRD 36077
17-03-17 18:12:31.548 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 18:12:31.568 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:31.568 -07 000000541 INF: FPGA: Recv ZSGSRD 36077
17-03-17 18:12:31.568 -07 000000593 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:12:31.568 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 9. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=90, R2=99, Total=189. Warn if over 250 bubbles per interval.
17-03-17 18:12:31.578 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-17 18:12:31.588 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:31.588 -07 000000541 INF: FPGA: Recv ZSGSRD 36076
17-03-17 18:12:31.598 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 18:12:31.618 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:31.618 -07 000000480 INF: FPGA: Recv ZSGSRD 36086
17-03-17 18:12:31.628 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:12:31.628 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:31.628 -07 000000502 INF: FPGA: Recv ZSGSRD 36083
17-03-17 18:12:31.638 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:31.638 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:31.638 -07 000000541 INF: FPGA: Recv ZSGSRD 36079
17-03-17 18:12:31.648 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:31.648 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:31.648 -07 000000012 INF: FPGA: Recv ZSGSRD 36085
17-03-17 18:12:31.658 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:31.658 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:31.658 -07 000000480 INF: FPGA: Recv ZSGSRD 36078
17-03-17 18:12:31.668 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:31.668 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:31.668 -07 000000012 INF: FPGA: Recv ZSGSRD 36075
17-03-17 18:12:31.678 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:31.678 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:31.678 -07 000000627 INF: FPGA: Recv ZSGSRD 36079
17-03-17 18:12:31.688 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:12:31.688 -07 000000551 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:12:31.688 -07 000000501 INF: FPGA: Recv ZPIEZORD 32142
17-03-17 18:12:31.698 -07 000000551 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:31.698 -07 000000551 INF: Z Motor: Piezo is near 48.7 V (nominally 0 to 100 V), expect near 57.4 V, since DAC is at 5.737 V. Piezo Error = -8.7 V.
17-03-17 18:12:31.698 -07 000000551 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.1 um, Read 10 ADC samples: Avg = 36080 (-171.2 uncal um), Error = 0.9 uncal um, Median = 36078 (-171.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 36075 (-171.2 uncal um), Max = 36086 (-171.3 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 18:12:31.698 -07 000000551 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36080, posNoise = 6, negNoise = 5
17-03-17 18:12:31.698 -07 000000551 INF: Z Motor: After move to -0.172117, error = 0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:12:31.698 -07 000000551 INF: Z Motor: Settle wait time = 1422 ms, measure time = 152 ms (allowed 150 ms), total time = 1574 ms
17-03-17 18:12:31.698 -07 000000551 INF: Z Motor: Warning: Actual position measuring time = 152 ms, longer than max expected time of 150 ms
17-03-17 18:12:31.698 -07 000000551 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1578 ms
17-03-17 18:12:31.698 -07 000000551 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:12:31.698 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:12:31.698 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:12:31.698 -07 000000433 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:12:31.698 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:12:31.698 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:12:31.698 -07 000000486 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:12:31.698 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 18:12:31.698 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:12:31.698 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:12:31.698 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:12:31.718 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-17 18:12:31.718 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-17 18:12:31.718 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:12:31.758 -07 000000551 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:12:31.958 -07 000000608 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:12:31.958 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:12:31.958 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:12:31.968 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2147487792, 0x0, 559484976) start.
17-03-17 18:12:31.998 -07 000000012 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:12:31.998 -07 000000512 INF: FPGA: Recv CAMSNAP
17-03-17 18:12:31.998 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 279 ms to get response, and 285 ms overall
17-03-17 18:12:32.088 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2147487792, 0x0, 559484976) end. Duration was 125 ms.
17-03-17 18:12:32.088 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:12:32.088 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 18:12:32.088 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms.
17-03-17 18:12:32.198 -07 000000480 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:12:32.198 -07 000000012 INF: Autofocus start
17-03-17 18:12:32.198 -07 000000012 INF: MeasureProfile start
17-03-17 18:12:32.198 -07 000000512 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:12:32.208 -07 000000480 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:12:32.208 -07 000000480 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:12:32.208 -07 000000012 INF: MeasureProfile done
17-03-17 18:12:32.208 -07 000000012 INF: X=48  Z correction [um]=0.1739867
17-03-17 18:12:32.208 -07 000000012 INF: Autofocus finished
17-03-17 18:12:32.408 -07 000000012 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:12:32.408 -07 000000480 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:12:32.408 -07 000000610 INF: ------------ Scan Snapping tile 19 at Y-position 74.8330078125, Z-position -0.17210892608587. ----------
17-03-17 18:12:32.408 -07 000000610 INF: Cycle	10	Tile	19	Exposure Settings		A	392	G	188	T	188	C	392
17-03-17 18:12:32.418 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36150, sync = True, waitForSettling = True)
17-03-17 18:12:32.418 -07 000000610 INF: Z Motor: Moving to -0.165484 mm, started at -0.172109 mm, distance = 6.62 um
17-03-17 18:12:32.418 -07 000000610 INF: FPGA: Xmit ZDACW 36150\n [Z Motor]
17-03-17 18:12:32.418 -07 000000480 INF: FPGA: Recv ZDACW
17-03-17 18:12:32.428 -07 000000610 INF: FPGA: 'ZDACW 36150' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:32.428 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:12:32.428 -07 000000512 INF: FPGA: Recv ZDACR 36150
17-03-17 18:12:32.438 -07 000000610 INF: FPGA: 'ZDACR' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:32.438 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:12:32.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:32.588 -07 000000480 INF: FPGA: Recv ZSGSRD 35051
17-03-17 18:12:32.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:12:32.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:32.598 -07 000000512 INF: FPGA: Recv ZSGSRD 35052
17-03-17 18:12:32.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:32.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:32.608 -07 000000512 INF: FPGA: Recv ZSGSRD 35051
17-03-17 18:12:32.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:32.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:32.618 -07 000000480 INF: FPGA: Recv ZSGSRD 35049
17-03-17 18:12:32.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:32.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:32.628 -07 000000480 INF: FPGA: Recv ZSGSRD 35056
17-03-17 18:12:32.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:32.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:32.638 -07 000000012 INF: FPGA: Recv ZSGSRD 35049
17-03-17 18:12:32.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:32.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:32.648 -07 000000480 INF: FPGA: Recv ZSGSRD 35047
17-03-17 18:12:32.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:32.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:32.658 -07 000000012 INF: FPGA: Recv ZSGSRD 35050
17-03-17 18:12:32.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:32.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:32.668 -07 000000480 INF: FPGA: Recv ZSGSRD 35050
17-03-17 18:12:32.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:32.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:32.678 -07 000000012 INF: FPGA: Recv ZSGSRD 35054
17-03-17 18:12:32.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:32.688 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:12:32.688 -07 000000480 INF: FPGA: Recv ZPIEZORD 30778
17-03-17 18:12:32.698 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:32.698 -07 000000610 INF: Z Motor: Piezo is near 45.7 V (nominally 0 to 100 V), expect near 55.2 V, since DAC is at 5.516 V. Piezo Error = -9.4 V.
17-03-17 18:12:32.698 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -165.5 um, Read 10 ADC samples: Avg = 35051 (-164.6 uncal um), Error = 0.8 uncal um, Median = 35050 (-164.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35047 (-164.6 uncal um), Max = 35056 (-164.7 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 18:12:32.698 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35051, posNoise = 5, negNoise = 4
17-03-17 18:12:32.698 -07 000000610 INF: Z Motor: After move to -0.165484, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:12:32.698 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 18:12:32.698 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:12:32.698 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:12:32.698 -07 000000480 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:12:32.698 -07 000000012 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:12:32.698 -07 000000012 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:12:32.698 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:12:32.698 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:12:32.698 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:12:32.698 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:12:32.698 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:12:32.698 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:12:32.708 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 18:12:32.708 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:12:32.708 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:12:32.708 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 18:12:32.708 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:12:32.718 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 11 ms.
17-03-17 18:12:32.718 -07 000000012 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 18:12:32.718 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-17 18:12:32.718 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 18 ms.
17-03-17 18:12:32.718 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 392 392 188 188 36326 150\n [Camera]
17-03-17 18:12:32.918 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:12:33.308 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 584
17-03-17 18:12:33.318 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 584
17-03-17 18:12:33.318 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:12:33.318 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 584
17-03-17 18:12:33.318 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 584
17-03-17 18:12:33.318 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:12:33.328 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:12:33.328 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 2166569176, 0x0, 391868352) start.
17-03-17 18:12:33.328 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:12:33.328 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2201991440, 0x0, 418435064) start.
17-03-17 18:12:33.698 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2201991440, 0x0, 418435064) end. Duration was 368 ms.
17-03-17 18:12:33.698 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 369 ms.
17-03-17 18:12:33.698 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:12:33.698 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:12:33.698 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 2166569176, 0x0, 391868352) end. Duration was 373 ms.
17-03-17 18:12:33.698 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 374 ms.
17-03-17 18:12:33.698 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:12:33.708 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:12:33.708 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-17 18:12:33.708 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 18:12:33.718 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36326 777
17-03-17 18:12:33.718 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning grn on 927
17-03-17 18:12:33.848 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1115
17-03-17 18:12:33.848 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1115
17-03-17 18:12:33.848 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:12:33.958 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1115
17-03-17 18:12:33.958 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1115
17-03-17 18:12:33.958 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:12:33.958 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:12:33.958 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 18:12:33.968 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:12:33.968 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-17 18:12:34.038 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP 1307
17-03-17 18:12:34.038 -07 000000382 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:12:34.038 -07 000000610 INF: FPGA: 'CAMDBLSNAP 392 392 188 188 36326 150' command took 2 ms to send, 1302 ms to get response, and 1315 ms overall
17-03-17 18:12:34.368 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 401 ms.
17-03-17 18:12:34.368 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 18:12:34.368 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:12:34.368 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 406 ms.
17-03-17 18:12:34.368 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 407 ms.
17-03-17 18:12:34.368 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:12:34.368 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:12:34.368 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 527 ms.
17-03-17 18:12:34.368 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) start.
17-03-17 18:12:34.378 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:12:34.378 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 418 ms.
17-03-17 18:12:34.418 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) end. Duration was 42 ms.
17-03-17 18:12:34.418 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) start.
17-03-17 18:12:34.458 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) end. Duration was 42 ms.
17-03-17 18:12:34.458 -07 000000610 INF: Move compensator for Bottom-surface imaging.
17-03-17 18:12:34.458 -07 000000610 INF: FPGA: Xmit EMCUR 80\n [Compensator]
17-03-17 18:12:34.458 -07 000000486 INF: FPGA: Recv EMCUR 
17-03-17 18:12:34.468 -07 000000610 INF: FPGA: 'EMCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:12:34.468 -07 000000610 INF: FPGA: Xmit EMIN 20 40\n [Compensator]
17-03-17 18:12:34.968 -07 000000593 INF: FPGA: Recv EMIN
17-03-17 18:12:34.968 -07 000000610 INF: FPGA: 'EMIN 20 40' command took 0 ms to send, 492 ms to get response, and 502 ms overall
17-03-17 18:12:34.968 -07 000000610 INF: FPGA: Xmit EMCUR 60\n [Compensator]
17-03-17 18:12:34.968 -07 000000459 INF: FPGA: Recv EMCUR 
17-03-17 18:12:34.978 -07 000000610 INF: FPGA: 'EMCUR 60' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:12:34.978 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 18:12:34.978 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 1 at Y-position 74.8330078125, Z-Position -0.165498411791998. ------
17-03-17 18:12:34.978 -07 000000486 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:12:34.978 -07 000000501 INF: Y Motor: MoveYZ optimized starting. Moving Y to 59.9126 mm, moving Z to -0.14001 mm
17-03-17 18:12:34.978 -07 000000501 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:12:34.988 -07 000000480 INF: Z Motor: Entering MoveAbsStepped (DAC = 30585, sync = True, waitForSettling = False)
17-03-17 18:12:34.988 -07 000000480 INF: Z Motor: Moving to -0.140009 mm, started at -0.165498 mm, distance = 25.49 um
17-03-17 18:12:34.988 -07 000000480 INF: FPGA: Xmit ZDACW 30585\n [Z Motor]
17-03-17 18:12:34.988 -07 000000012 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True)
17-03-17 18:12:34.988 -07 000000012 INF: Y Motor: Moving to 59.9126 mm, started at 74.8330 mm, delta = -14.9204 mm
17-03-17 18:12:34.988 -07 000000415 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:12:34.988 -07 000000486 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 3 ms to get response, and 6 ms overall
17-03-17 18:12:34.988 -07 000000502 INF: FPGA: Recv ZDACW
17-03-17 18:12:34.998 -07 000000480 INF: FPGA: 'ZDACW 30585' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:12:34.998 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:12:34.998 -07 000000415 INF: FPGA: Recv YRDPOS 153259
17-03-17 18:12:35.008 -07 000000486 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:12:35.008 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-17 18:12:35.008 -07 000000012 INF: Y Motor: Encoder = 153259 = motor step 119733.6 = 74.8335 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:12:35.008 -07 000000012 INF: Y Motor: Last commanded position = 74.8526 mm (119764.2 steps), delta from last commanded position = -14.9400 mm (-23904.0 steps). UsingTableMove = False
17-03-17 18:12:35.008 -07 000000012 INF: Y Motor: Moving to 122701 encoder counts
17-03-17 18:12:35.018 -07 000000480 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:12:35.018 -07 000000459 INF: FPGA: Recv ZDACR 30585
17-03-17 18:12:35.028 -07 000000012 INF: FPGA: Xmit YMVTO 122701\n [Y Motor]
17-03-17 18:12:35.028 -07 000000480 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:12:35.028 -07 000000480 INF: Z Motor: MoveAbsStepped took 39 ms (did NOT wait for settling yet))
17-03-17 18:12:35.208 -07 000000433 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:12:35.208 -07 000000486 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 219 ms overall
17-03-17 18:12:36.568 -07 000000480 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:12:36.568 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 9. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=90, R2=99, Total=189. Warn if over 250 bubbles per interval.
17-03-17 18:12:36.608 -07 000000433 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 10, FrontChillerTemperature: 3.996267,
17-03-17 18:12:36.648 -07 000000433 INF: FPGA: Recv YMVTO 122702 23904
17-03-17 18:12:36.648 -07 000000012 INF: FPGA: 'YMVTO 122701' command took 0 ms to send, 1618 ms to get response, and 1644 ms overall
17-03-17 18:12:36.648 -07 000000012 INF: Y Motor: Position error before settling = 1 encoder counts (0.000 mm)
17-03-17 18:12:36.648 -07 000000012 INF: Y Motor: To move from 74.833 to 59.913 (-14.920 mm) should take 23873 steps, but required 23904 steps (14.940 mm). Slippage = 0.019 mm (0.00%).
17-03-17 18:12:36.648 -07 000000012 INF: Y Motor: FPGA move command 'YMVTO 122701' took 1644 ms, distance = 14.920 mm, average velocity = 9.076 mm/sec
17-03-17 18:12:39.498 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:12:39.498 -07 000000541 INF: FPGA: Recv YRDPOS 122699
17-03-17 18:12:39.508 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:12:39.508 -07 000000012 INF: Y Motor: Encoder = 122699 = motor step 95858.6 = 59.9116 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:12:39.528 -07 000000012 INF: Y Motor: After move to 59.912609, error = -0.000988, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:12:39.528 -07 000000012 INF: Y Motor: Position error after settling = -2 encoder counts (-0.001 mm), Delta during settling = -3 counts (-0.001 mm)
17-03-17 18:12:39.528 -07 000000012 INF: Y Motor: Moved to 59.9116 after 4546 ms
17-03-17 18:12:39.538 -07 000000501 INF: Z Motor: EndOfMoveAbsStepped: target = -0.140009 mm (DAC = 30585)
17-03-17 18:12:39.538 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:39.538 -07 000000012 INF: FPGA: Recv ZSGSRD 31083
17-03-17 18:12:39.548 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:12:39.548 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:39.548 -07 000000012 INF: FPGA: Recv ZSGSRD 31082
17-03-17 18:12:39.558 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:39.558 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:39.558 -07 000000012 INF: FPGA: Recv ZSGSRD 31083
17-03-17 18:12:39.568 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:39.568 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:39.568 -07 000000593 INF: FPGA: Recv ZSGSRD 31085
17-03-17 18:12:39.578 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:39.578 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:40.358 -07 000000502 INF: FPGA: Recv ZSGSRD 31084
17-03-17 18:12:40.358 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 770 ms to get response, and 780 ms overall
17-03-17 18:12:40.358 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:40.358 -07 000000459 INF: FPGA: Recv ZSGSRD 31087
17-03-17 18:12:40.368 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:40.368 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:40.368 -07 000000486 INF: FPGA: Recv ZSGSRD 31088
17-03-17 18:12:40.378 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:40.378 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:40.378 -07 000000415 INF: FPGA: Recv ZSGSRD 31087
17-03-17 18:12:40.388 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:40.388 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:40.388 -07 000000502 INF: FPGA: Recv ZSGSRD 31085
17-03-17 18:12:40.398 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:40.398 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:40.398 -07 000000433 INF: FPGA: Recv ZSGSRD 31079
17-03-17 18:12:40.408 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:40.408 -07 000000501 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:12:40.408 -07 000000012 INF: FPGA: Recv ZPIEZORD 26627
17-03-17 18:12:40.418 -07 000000501 INF: FPGA: 'ZPIEZORD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:40.418 -07 000000501 INF: Z Motor: Piezo is near 36.9 V (nominally 0 to 100 V), expect near 46.7 V, since DAC is at 4.667 V. Piezo Error = -9.8 V.
17-03-17 18:12:40.418 -07 000000501 INF: Z Motor: ReadAdcAverage: Commanded Z = -140.0 um, Read 10 ADC samples: Avg = 31084 (-139.2 uncal um), Error = 0.8 uncal um, Median = 31084 (-139.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 31079 (-139.2 uncal um), Max = 31088 (-139.2 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 18:12:40.418 -07 000000501 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 31084, posNoise = 4, negNoise = 5
17-03-17 18:12:40.418 -07 000000501 INF: Z Motor: After move to -0.140009, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:12:40.418 -07 000000501 INF: Z Motor: Settle wait time = 4550 ms, measure time = 879 ms (allowed 150 ms), total time = 5429 ms
17-03-17 18:12:40.418 -07 000000501 INF: Z Motor: Warning: Actual position measuring time = 879 ms, longer than max expected time of 150 ms
17-03-17 18:12:40.418 -07 000000501 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 5433 ms
17-03-17 18:12:40.418 -07 000000501 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:12:40.418 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:12:40.418 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:12:40.418 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:12:40.418 -07 000000486 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:12:40.418 -07 000000502 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:12:40.418 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:12:40.418 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:12:40.418 -07 000000502 INF: Camera: sBCa_SetPowerMode(785074288, 1) start.
17-03-17 18:12:40.448 -07 000000502 INF: Camera: sBCa_SetPowerMode(785074288, 1) end. Duration was 23 ms.
17-03-17 18:12:40.448 -07 000000502 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:12:40.448 -07 000000502 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms.
17-03-17 18:12:40.448 -07 000000502 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:12:40.458 -07 000000502 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 18:12:40.458 -07 000000502 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 42 ms.
17-03-17 18:12:40.468 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:12:40.508 -07 000000459 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:12:40.708 -07 000000501 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:12:40.708 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:12:40.708 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:12:40.718 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2147487792, 0x0, 559484976) start.
17-03-17 18:12:40.748 -07 000000382 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:12:40.748 -07 000000502 INF: FPGA: Recv CAMSNAP
17-03-17 18:12:40.748 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 278 ms to get response, and 285 ms overall
17-03-17 18:12:40.838 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2147487792, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 18:12:40.838 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:12:40.838 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 18:12:40.838 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 18:12:40.948 -07 000000593 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:12:40.948 -07 000000486 INF: Image SNR check: start
17-03-17 18:12:40.948 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:12:40.958 -07 000000593 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:12:40.958 -07 000000593 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:12:40.958 -07 000000486 INF: Image SNR check: pass  [peak (Max-Min)=57.44]
17-03-17 18:12:40.958 -07 000000486 INF: Autofocus start
17-03-17 18:12:40.958 -07 000000486 INF: MeasureProfile start
17-03-17 18:12:40.978 -07 000000486 INF: MeasureProfile done
17-03-17 18:12:40.978 -07 000000486 INF: X=33  Z correction [um]=0.1347945
17-03-17 18:12:40.978 -07 000000486 INF: Autofocus finished
17-03-17 18:12:41.158 -07 000000501 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:12:41.158 -07 000000593 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:12:41.158 -07 000000610 INF: ------------ Scan Snapping tile 1 at Y-position 59.91162109375, Z-position -0.140013562225633. ----------
17-03-17 18:12:41.158 -07 000000610 INF: Cycle	10	Tile	1	Exposure Settings		A	392	G	188	T	188	C	392
17-03-17 18:12:41.168 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 29127, sync = True, waitForSettling = True)
17-03-17 18:12:41.168 -07 000000610 INF: Z Motor: Moving to -0.133335 mm, started at -0.140014 mm, distance = 6.68 um
17-03-17 18:12:41.168 -07 000000610 INF: FPGA: Xmit ZDACW 29127\n [Z Motor]
17-03-17 18:12:41.168 -07 000000382 INF: FPGA: Recv ZDACW
17-03-17 18:12:41.178 -07 000000610 INF: FPGA: 'ZDACW 29127' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:41.178 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:12:41.178 -07 000000415 INF: FPGA: Recv ZDACR 29127
17-03-17 18:12:41.188 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:41.188 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:12:41.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:41.338 -07 000000433 INF: FPGA: Recv ZSGSRD 30047
17-03-17 18:12:41.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:12:41.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:41.348 -07 000000593 INF: FPGA: Recv ZSGSRD 30048
17-03-17 18:12:41.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:41.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:41.358 -07 000000459 INF: FPGA: Recv ZSGSRD 30043
17-03-17 18:12:41.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:41.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:41.368 -07 000000012 INF: FPGA: Recv ZSGSRD 30040
17-03-17 18:12:41.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:41.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:41.378 -07 000000502 INF: FPGA: Recv ZSGSRD 30044
17-03-17 18:12:41.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:41.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:41.388 -07 000000593 INF: FPGA: Recv ZSGSRD 30047
17-03-17 18:12:41.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:41.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:41.398 -07 000000382 INF: FPGA: Recv ZSGSRD 30045
17-03-17 18:12:41.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:41.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:41.408 -07 000000415 INF: FPGA: Recv ZSGSRD 30045
17-03-17 18:12:41.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:41.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:41.418 -07 000000012 INF: FPGA: Recv ZSGSRD 30044
17-03-17 18:12:41.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:41.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:41.428 -07 000000486 INF: FPGA: Recv ZSGSRD 30041
17-03-17 18:12:41.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:41.438 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:12:41.438 -07 000000502 INF: FPGA: Recv ZPIEZORD 25510
17-03-17 18:12:41.448 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:41.448 -07 000000610 INF: Z Motor: Piezo is near 34.5 V (nominally 0 to 100 V), expect near 44.4 V, since DAC is at 4.444 V. Piezo Error = -9.9 V.
17-03-17 18:12:41.448 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.3 um, Read 10 ADC samples: Avg = 30044 (-132.5 uncal um), Error = 0.8 uncal um, Median = 30044 (-132.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 30040 (-132.5 uncal um), Max = 30048 (-132.6 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 18:12:41.448 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30044, posNoise = 4, negNoise = 4
17-03-17 18:12:41.448 -07 000000610 INF: Z Motor: After move to -0.133335, error = 0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:12:41.448 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 18:12:41.448 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:12:41.448 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:12:41.448 -07 000000459 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:12:41.448 -07 000000593 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:12:41.448 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:12:41.448 -07 000000486 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:12:41.448 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:12:41.448 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:12:41.448 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:12:41.448 -07 000000593 INF: Camera: sBCa_SetPowerMode(785074704, 1) start.
17-03-17 18:12:41.448 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 18:12:41.448 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:12:41.458 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 18:12:41.458 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:12:41.468 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-17 18:12:41.468 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 18:12:41.468 -07 000000593 INF: Camera: sBCa_SetPowerMode(785074704, 1) end. Duration was 20 ms.
17-03-17 18:12:41.468 -07 000000593 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:12:41.468 -07 000000593 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 18:12:41.468 -07 000000593 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:12:41.478 -07 000000593 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 18:12:41.478 -07 000000593 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 32 ms.
17-03-17 18:12:41.478 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 392 392 188 188 29304 150\n [Camera]
17-03-17 18:12:41.568 -07 000000486 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:12:41.568 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 9. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=90, R2=99, Total=189. Warn if over 250 bubbles per interval.
17-03-17 18:12:41.678 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:12:41.978 -07 000000382 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 10, FrontChillerTemperature: 4.003063,
17-03-17 18:12:42.078 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 584
17-03-17 18:12:42.078 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 584
17-03-17 18:12:42.078 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:12:42.078 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:12:42.078 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 2468220576, 0x0, 391868352) start.
17-03-17 18:12:42.078 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 584
17-03-17 18:12:42.078 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 584
17-03-17 18:12:42.078 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:12:42.078 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:12:42.078 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 2503642840, 0x0, 418435064) start.
17-03-17 18:12:42.268 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29304 777
17-03-17 18:12:42.418 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP turning grn on 927
17-03-17 18:12:42.468 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 2468220576, 0x0, 391868352) end. Duration was 392 ms.
17-03-17 18:12:42.468 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-17 18:12:42.578 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:12:42.578 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 2503642840, 0x0, 418435064) end. Duration was 496 ms.
17-03-17 18:12:42.578 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 497 ms.
17-03-17 18:12:42.578 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:12:42.588 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 113 ms.
17-03-17 18:12:42.588 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 507 ms.
17-03-17 18:12:42.588 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 18:12:42.588 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 509 ms.
17-03-17 18:12:42.608 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1115
17-03-17 18:12:42.608 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1115
17-03-17 18:12:42.608 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:12:42.608 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1115
17-03-17 18:12:42.608 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1115
17-03-17 18:12:42.608 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:12:42.608 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:12:42.608 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 18:12:42.618 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:12:42.618 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-17 18:12:42.798 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP 1307
17-03-17 18:12:42.798 -07 000000593 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:12:42.798 -07 000000610 INF: FPGA: 'CAMDBLSNAP 392 392 188 188 29304 150' command took 2 ms to send, 1304 ms to get response, and 1315 ms overall
17-03-17 18:12:42.798 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 18:12:42.798 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 2 at Y-position 59.91162109375, Z-Position -0.133332381598201. ------
17-03-17 18:12:42.798 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:12:42.808 -07 000000501 INF: Y Motor: MoveYZ optimized starting. Moving Y to 60.7426 mm, moving Z to -0.13981 mm
17-03-17 18:12:42.808 -07 000000501 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:12:42.808 -07 000000608 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:12:42.808 -07 000000608 INF: Y Motor: Entering MoveAbsStepped (target = 97188 steps, sync = True, waitForSettling = True)
17-03-17 18:12:42.808 -07 000000608 INF: Y Motor: Moving to 60.7426 mm, started at 59.9116 mm, delta = 0.8310 mm
17-03-17 18:12:42.808 -07 000000415 INF: Z Motor: Entering MoveAbsStepped (DAC = 30542, sync = True, waitForSettling = False)
17-03-17 18:12:42.808 -07 000000415 INF: Z Motor: Moving to -0.139812 mm, started at -0.133332 mm, distance = -6.48 um
17-03-17 18:12:42.818 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:12:42.818 -07 000000415 INF: FPGA: Xmit ZDACW 30542\n [Z Motor]
17-03-17 18:12:42.818 -07 000000012 INF: FPGA: Recv ZDACW
17-03-17 18:12:42.828 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:12:42.828 -07 000000415 INF: FPGA: 'ZDACW 30542' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-17 18:12:42.828 -07 000000551 INF: FPGA: Recv YRDPOS 122699
17-03-17 18:12:42.838 -07 000000502 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:12:42.838 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-17 18:12:42.838 -07 000000608 INF: Y Motor: Encoder = 122699 = motor step 95858.6 = 59.9116 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:12:42.838 -07 000000608 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:12:42.838 -07 000000608 INF: Y Motor: Moving 1330 steps1
17-03-17 18:12:42.848 -07 000000415 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:12:42.848 -07 000000382 INF: FPGA: Recv ZDACR 30542
17-03-17 18:12:42.858 -07 000000608 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:12:42.858 -07 000000415 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:12:42.858 -07 000000415 INF: Z Motor: MoveAbsStepped took 43 ms (did NOT wait for settling yet))
17-03-17 18:12:42.988 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 376 ms.
17-03-17 18:12:42.988 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-17 18:12:42.988 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:12:42.988 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 376 ms.
17-03-17 18:12:42.988 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-17 18:12:42.988 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:12:42.988 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:12:42.998 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:12:42.998 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 18:12:42.998 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 18:12:43.038 -07 000000012 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:12:43.038 -07 000000502 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 18:12:43.228 -07 000000382 INF: FPGA: Recv YMVTILE
17-03-17 18:12:43.228 -07 000000608 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 396 ms overall
17-03-17 18:12:43.268 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:12:43.268 -07 000000593 INF: FPGA: Recv YRDPOS 124382
17-03-17 18:12:43.278 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:43.278 -07 000000608 INF: Y Motor: Encoder = 124382 = motor step 97173.4 = 60.7334 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:12:43.278 -07 000000608 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm)
17-03-17 18:12:43.278 -07 000000608 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.831 mm, average velocity = 2.093 mm/sec
17-03-17 18:12:44.228 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:12:44.228 -07 000000415 INF: FPGA: Recv YRDPOS 124383
17-03-17 18:12:44.238 -07 000000608 INF: FPGA: 'YRDPOS' command took 1 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:12:44.238 -07 000000608 INF: Y Motor: Encoder = 124383 = motor step 97174.2 = 60.7339 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:12:44.248 -07 000000608 INF: Y Motor: After move to 60.742607, error = -0.008720, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:12:44.258 -07 000000608 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 18:12:44.258 -07 000000608 INF: Y Motor: Moved to 60.7339 after 1443 ms (table move)
17-03-17 18:12:44.258 -07 000000501 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139812 mm (DAC = 30542)
17-03-17 18:12:44.258 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:44.258 -07 000000502 INF: FPGA: Recv ZSGSRD 31060
17-03-17 18:12:44.268 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:12:44.268 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:44.268 -07 000000459 INF: FPGA: Recv ZSGSRD 31047
17-03-17 18:12:44.278 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:44.278 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:44.278 -07 000000608 INF: FPGA: Recv ZSGSRD 31056
17-03-17 18:12:44.288 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:44.288 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:44.288 -07 000000502 INF: FPGA: Recv ZSGSRD 31051
17-03-17 18:12:44.298 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:44.298 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:44.298 -07 000000608 INF: FPGA: Recv ZSGSRD 31061
17-03-17 18:12:44.308 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:44.308 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:44.308 -07 000000382 INF: FPGA: Recv ZSGSRD 31055
17-03-17 18:12:44.318 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:44.318 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:44.318 -07 000000459 INF: FPGA: Recv ZSGSRD 31050
17-03-17 18:12:44.328 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:44.328 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:44.328 -07 000000502 INF: FPGA: Recv ZSGSRD 31054
17-03-17 18:12:44.338 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:44.338 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:44.338 -07 000000459 INF: FPGA: Recv ZSGSRD 31052
17-03-17 18:12:44.348 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:44.348 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:44.348 -07 000000382 INF: FPGA: Recv ZSGSRD 31053
17-03-17 18:12:44.358 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:44.358 -07 000000501 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:12:44.358 -07 000000608 INF: FPGA: Recv ZPIEZORD 26862
17-03-17 18:12:44.368 -07 000000501 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:44.368 -07 000000501 INF: Z Motor: Piezo is near 37.4 V (nominally 0 to 100 V), expect near 46.6 V, since DAC is at 4.660 V. Piezo Error = -9.2 V.
17-03-17 18:12:44.368 -07 000000501 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.8 um, Read 10 ADC samples: Avg = 31054 (-139.0 uncal um), Error = 0.8 uncal um, Median = 31054 (-139.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 31047 (-139.0 uncal um), Max = 31061 (-139.1 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 18:12:44.368 -07 000000501 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 31054, posNoise = 7, negNoise = 7
17-03-17 18:12:44.368 -07 000000501 INF: Z Motor: After move to -0.139812, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:12:44.368 -07 000000501 INF: Z Motor: Settle wait time = 1446 ms, measure time = 107 ms (allowed 150 ms), total time = 1553 ms
17-03-17 18:12:44.368 -07 000000501 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-17 18:12:44.418 -07 000000501 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1609 ms
17-03-17 18:12:44.418 -07 000000501 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:12:44.418 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:12:44.418 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:12:44.418 -07 000000433 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:12:44.418 -07 000000486 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:12:44.418 -07 000000551 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:12:44.418 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:12:44.418 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:12:44.418 -07 000000551 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:12:44.428 -07 000000551 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:12:44.428 -07 000000551 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:12:44.438 -07 000000551 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-17 18:12:44.438 -07 000000551 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 14 ms.
17-03-17 18:12:44.438 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:12:44.478 -07 000000415 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:12:44.678 -07 000000593 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:12:44.678 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:12:44.678 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:12:44.678 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 675221432, 0x0, 559484976) start.
17-03-17 18:12:44.718 -07 000000486 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:12:44.718 -07 000000502 INF: FPGA: Recv CAMSNAP
17-03-17 18:12:44.718 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 278 ms to get response, and 285 ms overall
17-03-17 18:12:44.808 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 675221432, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 18:12:44.808 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:12:44.808 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 18:12:44.808 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 18:12:44.918 -07 000000627 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:12:44.918 -07 000000608 INF: Autofocus start
17-03-17 18:12:44.918 -07 000000608 INF: MeasureProfile start
17-03-17 18:12:44.918 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:12:44.928 -07 000000627 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:12:44.928 -07 000000627 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:12:44.928 -07 000000608 INF: MeasureProfile done
17-03-17 18:12:44.928 -07 000000608 INF: X=0  Z correction [um]=-0.02394831
17-03-17 18:12:44.928 -07 000000608 INF: Autofocus finished
17-03-17 18:12:45.128 -07 000000415 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:12:45.128 -07 000000627 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:12:45.128 -07 000000610 INF: ------------ Scan Snapping tile 2 at Y-position 60.73388671875, Z-position -0.13982083586138. ----------
17-03-17 18:12:45.128 -07 000000610 INF: Cycle	10	Tile	2	Exposure Settings		A	392	G	188	T	188	C	392
17-03-17 18:12:45.128 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 29050, sync = True, waitForSettling = True)
17-03-17 18:12:45.138 -07 000000610 INF: Z Motor: Moving to -0.132982 mm, started at -0.139821 mm, distance = 6.84 um
17-03-17 18:12:45.138 -07 000000610 INF: FPGA: Xmit ZDACW 29050\n [Z Motor]
17-03-17 18:12:45.138 -07 000000433 INF: FPGA: Recv ZDACW
17-03-17 18:12:45.148 -07 000000610 INF: FPGA: 'ZDACW 29050' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:12:45.148 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:12:45.148 -07 000000608 INF: FPGA: Recv ZDACR 29050
17-03-17 18:12:45.158 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:45.158 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:12:45.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:45.308 -07 000000382 INF: FPGA: Recv ZSGSRD 29996
17-03-17 18:12:45.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:12:45.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:45.318 -07 000000502 INF: FPGA: Recv ZSGSRD 29991
17-03-17 18:12:45.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:45.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:45.328 -07 000000551 INF: FPGA: Recv ZSGSRD 29993
17-03-17 18:12:45.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:45.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:45.338 -07 000000486 INF: FPGA: Recv ZSGSRD 29987
17-03-17 18:12:45.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:45.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:45.348 -07 000000382 INF: FPGA: Recv ZSGSRD 29989
17-03-17 18:12:45.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:45.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:45.358 -07 000000627 INF: FPGA: Recv ZSGSRD 29996
17-03-17 18:12:45.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:45.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:45.368 -07 000000618 INF: FPGA: Recv ZSGSRD 29989
17-03-17 18:12:45.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:45.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:45.378 -07 000000459 INF: FPGA: Recv ZSGSRD 29991
17-03-17 18:12:45.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:45.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:45.388 -07 000000593 INF: FPGA: Recv ZSGSRD 29988
17-03-17 18:12:45.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:45.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:45.398 -07 000000608 INF: FPGA: Recv ZSGSRD 29993
17-03-17 18:12:45.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:45.408 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:12:45.408 -07 000000551 INF: FPGA: Recv ZPIEZORD 25482
17-03-17 18:12:45.418 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:45.418 -07 000000610 INF: Z Motor: Piezo is near 34.4 V (nominally 0 to 100 V), expect near 44.3 V, since DAC is at 4.433 V. Piezo Error = -9.9 V.
17-03-17 18:12:45.418 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.0 um, Read 10 ADC samples: Avg = 29991 (-132.2 uncal um), Error = 0.8 uncal um, Median = 29991 (-132.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29987 (-132.2 uncal um), Max = 29996 (-132.2 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 18:12:45.418 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29991, posNoise = 5, negNoise = 4
17-03-17 18:12:45.418 -07 000000610 INF: Z Motor: After move to -0.132982, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:12:45.418 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 18:12:45.418 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:12:45.418 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:12:45.418 -07 000000459 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:12:45.418 -07 000000433 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:12:45.418 -07 000000012 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:12:45.418 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:12:45.418 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:12:45.418 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:12:45.418 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 18:12:45.418 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:12:45.418 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-17 18:12:45.418 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:12:45.428 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 18:12:45.428 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:12:45.428 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 18:12:45.428 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:12:45.428 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 18:12:45.438 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 18:12:45.438 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 18:12:45.438 -07 000000012 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 18:12:45.438 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 392 392 188 188 29227 150\n [Camera]
17-03-17 18:12:45.638 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:12:46.028 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 584
17-03-17 18:12:46.028 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 584
17-03-17 18:12:46.028 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:12:46.028 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:12:46.028 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 1056706608, 0x0, 391868352) start.
17-03-17 18:12:46.028 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 584
17-03-17 18:12:46.028 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 584
17-03-17 18:12:46.028 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:12:46.028 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:12:46.028 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 1092128872, 0x0, 418435064) start.
17-03-17 18:12:46.218 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29227 777
17-03-17 18:12:46.368 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning grn on 927
17-03-17 18:12:46.428 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 1056706608, 0x0, 391868352) end. Duration was 398 ms.
17-03-17 18:12:46.428 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 18:12:46.428 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:12:46.428 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:12:46.428 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-17 18:12:46.428 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 1092128872, 0x0, 418435064) end. Duration was 399 ms.
17-03-17 18:12:46.428 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 18:12:46.428 -07 000000593 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:12:46.438 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:12:46.438 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-17 18:12:46.558 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1115
17-03-17 18:12:46.558 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1115
17-03-17 18:12:46.558 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:12:46.558 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:12:46.558 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 1127551136, 0x0, 391868352) start.
17-03-17 18:12:46.558 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1115
17-03-17 18:12:46.558 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1115
17-03-17 18:12:46.568 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:12:46.568 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:12:46.568 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 18:12:46.568 -07 000000382 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:12:46.568 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 9. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=90, R2=99, Total=189. Warn if over 250 bubbles per interval.
17-03-17 18:12:46.748 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP 1307
17-03-17 18:12:46.748 -07 000000502 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:12:46.748 -07 000000610 INF: FPGA: 'CAMDBLSNAP 392 392 188 188 29227 150' command took 2 ms to send, 1307 ms to get response, and 1314 ms overall
17-03-17 18:12:46.748 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 18:12:46.748 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 3 at Y-position 60.73388671875, Z-Position -0.132991898354688. ------
17-03-17 18:12:46.758 -07 000000012 INF: Y Motor: MoveYZ optimized starting. Moving Y to 61.5726 mm, moving Z to -0.13966 mm
17-03-17 18:12:46.758 -07 000000012 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:12:46.758 -07 000000593 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:12:46.758 -07 000000502 INF: Z Motor: Entering MoveAbsStepped (DAC = 30508, sync = True, waitForSettling = False)
17-03-17 18:12:46.758 -07 000000502 INF: Z Motor: Moving to -0.139657 mm, started at -0.132992 mm, distance = -6.66 um
17-03-17 18:12:46.758 -07 000000382 INF: Y Motor: Entering MoveAbsStepped (target = 98516 steps, sync = True, waitForSettling = True)
17-03-17 18:12:46.758 -07 000000608 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:12:46.758 -07 000000382 INF: Y Motor: Moving to 61.5726 mm, started at 60.7339 mm, delta = 0.8387 mm
17-03-17 18:12:46.768 -07 000000593 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 18:12:46.768 -07 000000502 INF: FPGA: Xmit ZDACW 30508\n [Z Motor]
17-03-17 18:12:46.768 -07 000000608 INF: FPGA: Recv ZDACW
17-03-17 18:12:46.778 -07 000000502 INF: FPGA: 'ZDACW 30508' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-17 18:12:46.778 -07 000000502 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:12:46.778 -07 000000608 INF: FPGA: Recv ZDACR 30508
17-03-17 18:12:46.788 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:12:46.788 -07 000000502 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:46.788 -07 000000502 INF: Z Motor: MoveAbsStepped took 23 ms (did NOT wait for settling yet))
17-03-17 18:12:46.788 -07 000000502 INF: FPGA: Recv YRDPOS 124383
17-03-17 18:12:46.798 -07 000000593 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:12:46.798 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 31 ms overall
17-03-17 18:12:46.798 -07 000000382 INF: Y Motor: Encoder = 124383 = motor step 97174.2 = 60.7339 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:12:46.798 -07 000000382 INF: Y Motor: Last commanded position = 60.7426 mm (97188.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:12:46.798 -07 000000382 INF: Y Motor: Moving 1342 steps-19
17-03-17 18:12:46.808 -07 000000382 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:12:46.948 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 379 ms.
17-03-17 18:12:46.948 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-17 18:12:46.948 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:12:46.948 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 1127551136, 0x0, 391868352) end. Duration was 384 ms.
17-03-17 18:12:46.948 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 18:12:46.948 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:12:46.948 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:12:46.958 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-17 18:12:46.958 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-17 18:12:46.958 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 18:12:46.998 -07 000000608 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:12:46.998 -07 000000593 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 232 ms overall
17-03-17 18:12:47.178 -07 000000608 INF: FPGA: Recv YMVTILE
17-03-17 18:12:47.178 -07 000000382 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-17 18:12:47.218 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:12:47.218 -07 000000502 INF: FPGA: Recv YRDPOS 126084
17-03-17 18:12:47.228 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:47.228 -07 000000382 INF: Y Motor: Encoder = 126084 = motor step 98503.1 = 61.5645 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:12:47.228 -07 000000382 INF: Y Motor: Position error before settling (table move) = -17 encoder counts (-0.008 mm)
17-03-17 18:12:47.228 -07 000000382 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 387 ms, distance = 0.839 mm, average velocity = 2.167 mm/sec
17-03-17 18:12:47.348 -07 000000502 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 10, FrontChillerTemperature: 3.996267,
17-03-17 18:12:48.178 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:12:48.178 -07 000000608 INF: FPGA: Recv YRDPOS 126084
17-03-17 18:12:48.188 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:12:48.188 -07 000000382 INF: Y Motor: Encoder = 126084 = motor step 98503.1 = 61.5645 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:12:48.208 -07 000000382 INF: Y Motor: After move to 61.572609, error = -0.008156, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:12:48.208 -07 000000382 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:12:48.208 -07 000000382 INF: Y Motor: Moved to 61.5645 after 1442 ms (table move)
17-03-17 18:12:48.208 -07 000000012 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139657 mm (DAC = 30508)
17-03-17 18:12:48.208 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:48.208 -07 000000593 INF: FPGA: Recv ZSGSRD 31036
17-03-17 18:12:48.218 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:12:48.218 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:48.218 -07 000000627 INF: FPGA: Recv ZSGSRD 31030
17-03-17 18:12:48.228 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:48.228 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:48.228 -07 000000608 INF: FPGA: Recv ZSGSRD 31026
17-03-17 18:12:48.238 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:48.238 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:48.238 -07 000000627 INF: FPGA: Recv ZSGSRD 31030
17-03-17 18:12:48.248 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:48.248 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:48.248 -07 000000501 INF: FPGA: Recv ZSGSRD 31034
17-03-17 18:12:48.258 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:48.258 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:48.258 -07 000000512 INF: FPGA: Recv ZSGSRD 31036
17-03-17 18:12:48.268 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:48.268 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:48.268 -07 000000608 INF: FPGA: Recv ZSGSRD 31036
17-03-17 18:12:48.278 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:48.278 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:48.278 -07 000000627 INF: FPGA: Recv ZSGSRD 31025
17-03-17 18:12:48.288 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:48.288 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:48.288 -07 000000502 INF: FPGA: Recv ZSGSRD 31027
17-03-17 18:12:48.298 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:48.298 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:48.298 -07 000000608 INF: FPGA: Recv ZSGSRD 31030
17-03-17 18:12:48.308 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:48.308 -07 000000012 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:12:48.308 -07 000000627 INF: FPGA: Recv ZPIEZORD 26868
17-03-17 18:12:48.318 -07 000000012 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:48.318 -07 000000012 INF: Z Motor: Piezo is near 37.4 V (nominally 0 to 100 V), expect near 46.6 V, since DAC is at 4.655 V. Piezo Error = -9.2 V.
17-03-17 18:12:48.318 -07 000000012 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.7 um, Read 10 ADC samples: Avg = 31031 (-138.9 uncal um), Error = 0.8 uncal um, Median = 31030 (-138.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 31025 (-138.8 uncal um), Max = 31036 (-138.9 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 18:12:48.318 -07 000000012 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 31031, posNoise = 5, negNoise = 6
17-03-17 18:12:48.318 -07 000000012 INF: Z Motor: After move to -0.139657, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:12:48.318 -07 000000012 INF: Z Motor: Settle wait time = 1446 ms, measure time = 107 ms (allowed 150 ms), total time = 1553 ms
17-03-17 18:12:48.318 -07 000000012 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-17 18:12:48.368 -07 000000012 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1605 ms
17-03-17 18:12:48.368 -07 000000012 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:12:48.368 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:12:48.368 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:12:48.368 -07 000000593 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:12:48.368 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:12:48.368 -07 000000627 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:12:48.368 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:12:48.378 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:12:48.378 -07 000000627 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:12:48.378 -07 000000627 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:12:48.378 -07 000000627 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:12:48.388 -07 000000627 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 9 ms.
17-03-17 18:12:48.388 -07 000000627 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 18:12:48.388 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:12:48.438 -07 000000512 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:12:48.638 -07 000000501 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:12:48.638 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:12:48.638 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:12:48.638 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1179848464, 0x0, 559484976) start.
17-03-17 18:12:48.668 -07 000000502 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:12:48.678 -07 000000382 INF: FPGA: Recv CAMSNAP
17-03-17 18:12:48.678 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 280 ms to get response, and 284 ms overall
17-03-17 18:12:48.758 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1179848464, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 18:12:48.758 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:12:48.768 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-17 18:12:48.768 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 130 ms.
17-03-17 18:12:48.778 -07 000000627 INF: Autofocus start
17-03-17 18:12:48.778 -07 000000627 INF: MeasureProfile start
17-03-17 18:12:48.778 -07 000000012 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:12:48.778 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:12:48.788 -07 000000012 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:12:48.788 -07 000000012 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:12:48.788 -07 000000627 INF: MeasureProfile done
17-03-17 18:12:48.788 -07 000000627 INF: X=0  Z correction [um]=-0.02394831
17-03-17 18:12:48.788 -07 000000627 INF: Autofocus finished
17-03-17 18:12:48.988 -07 000000502 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:12:48.988 -07 000000012 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:12:48.988 -07 000000610 INF: ------------ Scan Snapping tile 3 at Y-position 61.564453125, Z-position -0.139673078982119. ----------
17-03-17 18:12:48.988 -07 000000610 INF: Cycle	10	Tile	3	Exposure Settings		A	392	G	188	T	188	C	392
17-03-17 18:12:48.998 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 29015, sync = True, waitForSettling = True)
17-03-17 18:12:48.998 -07 000000610 INF: Z Motor: Moving to -0.132822 mm, started at -0.139673 mm, distance = 6.85 um
17-03-17 18:12:48.998 -07 000000610 INF: FPGA: Xmit ZDACW 29015\n [Z Motor]
17-03-17 18:12:48.998 -07 000000627 INF: FPGA: Recv ZDACW
17-03-17 18:12:49.008 -07 000000610 INF: FPGA: 'ZDACW 29015' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:12:49.008 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:12:49.008 -07 000000593 INF: FPGA: Recv ZDACR 29015
17-03-17 18:12:49.018 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:49.018 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:12:49.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:49.168 -07 000000593 INF: FPGA: Recv ZSGSRD 29970
17-03-17 18:12:49.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:12:49.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:49.178 -07 000000608 INF: FPGA: Recv ZSGSRD 29967
17-03-17 18:12:49.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:49.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:49.188 -07 000000608 INF: FPGA: Recv ZSGSRD 29970
17-03-17 18:12:49.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:49.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:49.198 -07 000000382 INF: FPGA: Recv ZSGSRD 29964
17-03-17 18:12:49.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:49.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:49.208 -07 000000480 INF: FPGA: Recv ZSGSRD 29968
17-03-17 18:12:49.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:49.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:49.218 -07 000000382 INF: FPGA: Recv ZSGSRD 29970
17-03-17 18:12:49.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:49.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:49.228 -07 000000012 INF: FPGA: Recv ZSGSRD 29966
17-03-17 18:12:49.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:49.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:49.238 -07 000000512 INF: FPGA: Recv ZSGSRD 29966
17-03-17 18:12:49.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:49.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:49.248 -07 000000382 INF: FPGA: Recv ZSGSRD 29971
17-03-17 18:12:49.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:49.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:49.258 -07 000000382 INF: FPGA: Recv ZSGSRD 29961
17-03-17 18:12:49.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:49.268 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:12:49.268 -07 000000627 INF: FPGA: Recv ZPIEZORD 25514
17-03-17 18:12:49.278 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:49.278 -07 000000610 INF: Z Motor: Piezo is near 34.5 V (nominally 0 to 100 V), expect near 44.3 V, since DAC is at 4.427 V. Piezo Error = -9.8 V.
17-03-17 18:12:49.278 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.8 um, Read 10 ADC samples: Avg = 29967 (-132.1 uncal um), Error = 0.8 uncal um, Median = 29968 (-132.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29961 (-132.0 uncal um), Max = 29971 (-132.1 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 18:12:49.278 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29967, posNoise = 4, negNoise = 6
17-03-17 18:12:49.278 -07 000000610 INF: Z Motor: After move to -0.132822, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:12:49.278 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 18:12:49.278 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:12:49.278 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:12:49.278 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:12:49.278 -07 000000593 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:12:49.288 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:12:49.288 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:12:49.288 -07 000000012 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:12:49.288 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:12:49.288 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 18:12:49.288 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:12:49.288 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 18:12:49.288 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:12:49.288 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 18:12:49.288 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:12:49.288 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 18:12:49.288 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:12:49.298 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 18:12:49.298 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 18:12:49.298 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-17 18:12:49.298 -07 000000012 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 18:12:49.298 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 392 392 188 188 29192 150\n [Camera]
17-03-17 18:12:49.498 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:12:49.888 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 584
17-03-17 18:12:49.888 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 584
17-03-17 18:12:49.898 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:12:49.898 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:12:49.898 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 1428998304, 0x0, 391868352) start.
17-03-17 18:12:49.898 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 584
17-03-17 18:12:49.898 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 584
17-03-17 18:12:49.898 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:12:49.898 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:12:49.898 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 1464420568, 0x0, 418435064) start.
17-03-17 18:12:50.088 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29192 777
17-03-17 18:12:50.238 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP turning grn on 927
17-03-17 18:12:50.298 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 1464420568, 0x0, 418435064) end. Duration was 401 ms.
17-03-17 18:12:50.298 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-17 18:12:50.298 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:12:50.298 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 1428998304, 0x0, 391868352) end. Duration was 404 ms.
17-03-17 18:12:50.298 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-17 18:12:50.298 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:12:50.308 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:12:50.308 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:12:50.308 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms.
17-03-17 18:12:50.308 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-17 18:12:50.428 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1115
17-03-17 18:12:50.428 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1115
17-03-17 18:12:50.428 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:12:50.428 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:12:50.428 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 18:12:50.428 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1115
17-03-17 18:12:50.428 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1115
17-03-17 18:12:50.428 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:12:50.428 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:12:50.428 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-17 18:12:50.618 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP 1307
17-03-17 18:12:50.618 -07 000000608 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:12:50.618 -07 000000610 INF: FPGA: 'CAMDBLSNAP 392 392 188 188 29192 150' command took 2 ms to send, 1312 ms to get response, and 1314 ms overall
17-03-17 18:12:50.618 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 18:12:50.618 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 4 at Y-position 61.564453125, Z-Position -0.132837717263286. ------
17-03-17 18:12:50.618 -07 000000382 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:12:50.618 -07 000000512 INF: Y Motor: MoveYZ optimized starting. Moving Y to 62.4026 mm, moving Z to -0.13914 mm
17-03-17 18:12:50.618 -07 000000512 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:12:50.618 -07 000000502 INF: Y Motor: Entering MoveAbsStepped (target = 99844 steps, sync = True, waitForSettling = True)
17-03-17 18:12:50.618 -07 000000502 INF: Y Motor: Moving to 62.4026 mm, started at 61.5645 mm, delta = 0.8382 mm
17-03-17 18:12:50.618 -07 000000608 INF: Z Motor: Entering MoveAbsStepped (DAC = 30395, sync = True, waitForSettling = False)
17-03-17 18:12:50.628 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:12:50.628 -07 000000608 INF: Z Motor: Moving to -0.139139 mm, started at -0.132838 mm, distance = -6.30 um
17-03-17 18:12:50.628 -07 000000480 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:12:50.628 -07 000000382 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 4 ms overall
17-03-17 18:12:50.628 -07 000000480 INF: FPGA: Recv YRDPOS 126084
17-03-17 18:12:50.638 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:12:50.638 -07 000000502 INF: Y Motor: Encoder = 126084 = motor step 98503.1 = 61.5645 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:12:50.638 -07 000000502 INF: Y Motor: Last commanded position = 61.5726 mm (98516.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:12:50.638 -07 000000502 INF: Y Motor: Moving 1341 steps-17
17-03-17 18:12:50.638 -07 000000608 INF: FPGA: Xmit ZDACW 30395\n [Z Motor]
17-03-17 18:12:50.638 -07 000000551 INF: FPGA: Recv ZDACW
17-03-17 18:12:50.648 -07 000000608 INF: FPGA: 'ZDACW 30395' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 18:12:50.648 -07 000000382 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:12:50.658 -07 000000502 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:12:50.668 -07 000000608 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:12:50.668 -07 000000627 INF: FPGA: Recv ZDACR 30395
17-03-17 18:12:50.678 -07 000000608 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:12:50.678 -07 000000608 INF: Z Motor: MoveAbsStepped took 50 ms (did NOT wait for settling yet))
17-03-17 18:12:50.818 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 387 ms.
17-03-17 18:12:50.818 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 18:12:50.818 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:12:50.818 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:12:50.828 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 18:12:50.828 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 400 ms.
17-03-17 18:12:50.828 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 18:12:50.828 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:12:50.838 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 9 ms.
17-03-17 18:12:50.838 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-17 18:12:50.848 -07 000000593 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:12:50.848 -07 000000382 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 218 ms overall
17-03-17 18:12:51.028 -07 000000480 INF: FPGA: Recv YMVTILE
17-03-17 18:12:51.028 -07 000000502 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 18:12:51.068 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:12:51.068 -07 000000459 INF: FPGA: Recv YRDPOS 127787
17-03-17 18:12:51.078 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:12:51.078 -07 000000502 INF: Y Motor: Encoder = 127787 = motor step 99833.6 = 62.3960 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:12:51.078 -07 000000502 INF: Y Motor: Position error before settling (table move) = -14 encoder counts (-0.007 mm)
17-03-17 18:12:51.078 -07 000000502 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.838 mm, average velocity = 2.111 mm/sec
17-03-17 18:12:51.568 -07 000000382 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:12:51.568 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 9. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=90, R2=99, Total=189. Warn if over 250 bubbles per interval.
17-03-17 18:12:52.028 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:12:52.028 -07 000000593 INF: FPGA: Recv YRDPOS 127787
17-03-17 18:12:52.038 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:12:52.038 -07 000000502 INF: Y Motor: Encoder = 127787 = motor step 99833.6 = 62.3960 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:12:52.048 -07 000000502 INF: Y Motor: After move to 62.402607, error = -0.006611, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:12:52.048 -07 000000502 INF: Y Motor: Position error after settling (table move) = -14 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:12:52.048 -07 000000502 INF: Y Motor: Moved to 62.3960 after 1428 ms (table move)
17-03-17 18:12:52.058 -07 000000512 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139139 mm (DAC = 30395)
17-03-17 18:12:52.058 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:52.058 -07 000000551 INF: FPGA: Recv ZSGSRD 30949
17-03-17 18:12:52.068 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:12:52.068 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:52.068 -07 000000593 INF: FPGA: Recv ZSGSRD 30948
17-03-17 18:12:52.078 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:52.078 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:52.078 -07 000000593 INF: FPGA: Recv ZSGSRD 30953
17-03-17 18:12:52.088 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:52.088 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:52.088 -07 000000593 INF: FPGA: Recv ZSGSRD 30949
17-03-17 18:12:52.098 -07 000000512 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:52.098 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:52.098 -07 000000502 INF: FPGA: Recv ZSGSRD 30952
17-03-17 18:12:52.108 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:52.108 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:52.108 -07 000000502 INF: FPGA: Recv ZSGSRD 30954
17-03-17 18:12:52.118 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:52.118 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:52.118 -07 000000593 INF: FPGA: Recv ZSGSRD 30945
17-03-17 18:12:52.128 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:52.128 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:52.128 -07 000000551 INF: FPGA: Recv ZSGSRD 30945
17-03-17 18:12:52.138 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:52.138 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:52.138 -07 000000502 INF: FPGA: Recv ZSGSRD 30943
17-03-17 18:12:52.148 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:52.148 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:52.148 -07 000000502 INF: FPGA: Recv ZSGSRD 30952
17-03-17 18:12:52.158 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:52.158 -07 000000512 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:12:52.158 -07 000000551 INF: FPGA: Recv ZPIEZORD 26809
17-03-17 18:12:52.168 -07 000000512 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:52.168 -07 000000512 INF: Z Motor: Piezo is near 37.3 V (nominally 0 to 100 V), expect near 46.4 V, since DAC is at 4.638 V. Piezo Error = -9.1 V.
17-03-17 18:12:52.168 -07 000000512 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.1 um, Read 10 ADC samples: Avg = 30949 (-138.3 uncal um), Error = 0.8 uncal um, Median = 30949 (-138.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 30943 (-138.3 uncal um), Max = 30954 (-138.4 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 18:12:52.168 -07 000000512 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30949, posNoise = 5, negNoise = 6
17-03-17 18:12:52.168 -07 000000512 INF: Z Motor: After move to -0.139139, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:12:52.168 -07 000000512 INF: Z Motor: Settle wait time = 1431 ms, measure time = 109 ms (allowed 150 ms), total time = 1540 ms
17-03-17 18:12:52.168 -07 000000512 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-17 18:12:52.218 -07 000000512 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1592 ms
17-03-17 18:12:52.218 -07 000000512 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:12:52.218 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:12:52.218 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:12:52.218 -07 000000551 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:12:52.218 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:12:52.218 -07 000000593 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:12:52.218 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:12:52.218 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 3 ms.
17-03-17 18:12:52.218 -07 000000593 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:12:52.228 -07 000000593 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:12:52.228 -07 000000593 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:12:52.238 -07 000000593 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 18:12:52.238 -07 000000593 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms.
17-03-17 18:12:52.238 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:12:52.288 -07 000000593 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:12:52.488 -07 000000502 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:12:52.488 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:12:52.488 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:12:52.488 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2218332320, 0x0, 559484976) start.
17-03-17 18:12:52.528 -07 000000512 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:12:52.528 -07 000000502 INF: FPGA: Recv CAMSNAP
17-03-17 18:12:52.528 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 282 ms to get response, and 285 ms overall
17-03-17 18:12:52.618 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2218332320, 0x0, 559484976) end. Duration was 128 ms.
17-03-17 18:12:52.618 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:12:52.618 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-17 18:12:52.618 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 131 ms.
17-03-17 18:12:52.628 -07 000000551 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:12:52.628 -07 000000502 INF: Autofocus start
17-03-17 18:12:52.628 -07 000000502 INF: MeasureProfile start
17-03-17 18:12:52.628 -07 000000512 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:12:52.638 -07 000000551 INF: FPGA: 'FOCMRRCUR 80' command took 1 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:12:52.638 -07 000000551 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:12:52.638 -07 000000502 INF: MeasureProfile done
17-03-17 18:12:52.638 -07 000000502 INF: X=16  Z correction [um]=0.0530179
17-03-17 18:12:52.638 -07 000000502 INF: Autofocus finished
17-03-17 18:12:52.718 -07 000000593 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 10, FrontChillerTemperature: 3.988112,
17-03-17 18:12:52.838 -07 000000618 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:12:52.838 -07 000000551 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:12:52.838 -07 000000610 INF: ------------ Scan Snapping tile 4 at Y-position 62.39599609375, Z-position -0.139146293586495. ----------
17-03-17 18:12:52.838 -07 000000610 INF: Cycle	10	Tile	4	Exposure Settings		A	392	G	188	T	188	C	392
17-03-17 18:12:52.848 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28919, sync = True, waitForSettling = True)
17-03-17 18:12:52.848 -07 000000610 INF: Z Motor: Moving to -0.132383 mm, started at -0.139146 mm, distance = 6.76 um
17-03-17 18:12:52.848 -07 000000610 INF: FPGA: Xmit ZDACW 28919\n [Z Motor]
17-03-17 18:12:52.848 -07 000000502 INF: FPGA: Recv ZDACW
17-03-17 18:12:52.858 -07 000000610 INF: FPGA: 'ZDACW 28919' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:12:52.858 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:12:52.858 -07 000000512 INF: FPGA: Recv ZDACR 28919
17-03-17 18:12:52.868 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:52.868 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:12:53.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:53.018 -07 000000593 INF: FPGA: Recv ZSGSRD 29905
17-03-17 18:12:53.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:12:53.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:53.038 -07 000000502 INF: FPGA: Recv ZSGSRD 29900
17-03-17 18:12:53.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 18:12:53.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:53.068 -07 000000593 INF: FPGA: Recv ZSGSRD 29898
17-03-17 18:12:53.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:12:53.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:53.098 -07 000000512 INF: FPGA: Recv ZSGSRD 29895
17-03-17 18:12:53.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:12:53.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:53.108 -07 000000551 INF: FPGA: Recv ZSGSRD 29896
17-03-17 18:12:53.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:53.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:53.118 -07 000000415 INF: FPGA: Recv ZSGSRD 29898
17-03-17 18:12:53.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:53.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:53.128 -07 000000512 INF: FPGA: Recv ZSGSRD 29890
17-03-17 18:12:53.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:53.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:53.138 -07 000000415 INF: FPGA: Recv ZSGSRD 29899
17-03-17 18:12:53.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:53.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:53.148 -07 000000593 INF: FPGA: Recv ZSGSRD 29902
17-03-17 18:12:53.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:53.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:53.158 -07 000000551 INF: FPGA: Recv ZSGSRD 29895
17-03-17 18:12:53.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:53.168 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:12:53.168 -07 000000618 INF: FPGA: Recv ZPIEZORD 25423
17-03-17 18:12:53.178 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:53.178 -07 000000610 INF: Z Motor: Piezo is near 34.3 V (nominally 0 to 100 V), expect near 44.1 V, since DAC is at 4.413 V. Piezo Error = -9.8 V.
17-03-17 18:12:53.178 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.4 um, Read 10 ADC samples: Avg = 29898 (-131.6 uncal um), Error = 0.8 uncal um, Median = 29898 (-131.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 29890 (-131.6 uncal um), Max = 29905 (-131.7 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 18:12:53.178 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29898, posNoise = 7, negNoise = 8
17-03-17 18:12:53.178 -07 000000610 INF: Z Motor: After move to -0.132383, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:12:53.178 -07 000000610 INF: Z Motor: MoveAbsStepped took 329 ms)
17-03-17 18:12:53.178 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:12:53.178 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:12:53.178 -07 000000593 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:12:53.178 -07 000000551 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:12:53.178 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:12:53.178 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:12:53.178 -07 000000415 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:12:53.178 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:12:53.178 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:12:53.178 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:12:53.178 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:12:53.178 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:12:53.188 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 18:12:53.188 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:12:53.188 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 18:12:53.188 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:12:53.198 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 18:12:53.198 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 18:12:53.198 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 18:12:53.198 -07 000000415 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 18:12:53.198 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 392 392 188 188 29096 150\n [Camera]
17-03-17 18:12:53.398 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:12:53.798 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 584
17-03-17 18:12:53.798 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 584
17-03-17 18:12:53.798 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:12:53.798 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:12:53.798 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 2233008400, 0x0, 391868352) start.
17-03-17 18:12:53.798 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 584
17-03-17 18:12:53.798 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 584
17-03-17 18:12:53.798 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:12:53.798 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:12:53.798 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-17 18:12:53.988 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29096 777
17-03-17 18:12:54.138 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP turning grn on 927
17-03-17 18:12:54.188 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 390 ms.
17-03-17 18:12:54.188 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 18:12:54.188 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:12:54.198 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:12:54.198 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 2233008400, 0x0, 391868352) end. Duration was 399 ms.
17-03-17 18:12:54.198 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 18:12:54.198 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:12:54.198 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:12:54.198 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-17 18:12:54.198 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-17 18:12:54.328 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1115
17-03-17 18:12:54.328 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1115
17-03-17 18:12:54.328 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:12:54.328 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:12:54.328 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) start.
17-03-17 18:12:54.328 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1115
17-03-17 18:12:54.328 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1115
17-03-17 18:12:54.328 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:12:54.328 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:12:54.328 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 2369425112, 0x0, 418435064) start.
17-03-17 18:12:54.518 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP 1307
17-03-17 18:12:54.518 -07 000000593 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:12:54.518 -07 000000610 INF: FPGA: 'CAMDBLSNAP 392 392 188 188 29096 150' command took 2 ms to send, 1304 ms to get response, and 1314 ms overall
17-03-17 18:12:54.518 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 18:12:54.518 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 5 at Y-position 62.39599609375, Z-Position -0.132394446625504. ------
17-03-17 18:12:54.518 -07 000000618 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:12:54.518 -07 000000502 INF: Y Motor: MoveYZ optimized starting. Moving Y to 63.2326 mm, moving Z to -0.13916 mm
17-03-17 18:12:54.518 -07 000000502 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:12:54.528 -07 000000480 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:12:54.528 -07 000000618 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 18:12:54.528 -07 000000618 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:12:54.528 -07 000000512 INF: Y Motor: Entering MoveAbsStepped (target = 101172 steps, sync = True, waitForSettling = True)
17-03-17 18:12:54.528 -07 000000593 INF: Z Motor: Entering MoveAbsStepped (DAC = 30399, sync = True, waitForSettling = False)
17-03-17 18:12:54.528 -07 000000593 INF: Z Motor: Moving to -0.139158 mm, started at -0.132394 mm, distance = -6.76 um
17-03-17 18:12:54.528 -07 000000512 INF: Y Motor: Moving to 63.2326 mm, started at 62.3960 mm, delta = 0.8366 mm
17-03-17 18:12:54.538 -07 000000593 INF: FPGA: Xmit ZDACW 30399\n [Z Motor]
17-03-17 18:12:54.538 -07 000000012 INF: FPGA: Recv ZDACW
17-03-17 18:12:54.548 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:12:54.548 -07 000000593 INF: FPGA: 'ZDACW 30399' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-17 18:12:54.548 -07 000000627 INF: FPGA: Recv YRDPOS 127788
17-03-17 18:12:54.558 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-17 18:12:54.558 -07 000000512 INF: Y Motor: Encoder = 127788 = motor step 99834.4 = 62.3965 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:12:54.558 -07 000000593 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:12:54.558 -07 000000012 INF: FPGA: Recv ZDACR 30399
17-03-17 18:12:54.558 -07 000000512 INF: Y Motor: Last commanded position = 62.4026 mm (99844.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:12:54.558 -07 000000512 INF: Y Motor: Moving 1338 steps-14
17-03-17 18:12:54.568 -07 000000593 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 18:12:54.568 -07 000000593 INF: Z Motor: MoveAbsStepped took 33 ms (did NOT wait for settling yet))
17-03-17 18:12:54.568 -07 000000512 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:12:54.728 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) end. Duration was 397 ms.
17-03-17 18:12:54.728 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 18:12:54.728 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:12:54.728 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 2369425112, 0x0, 418435064) end. Duration was 400 ms.
17-03-17 18:12:54.728 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 18:12:54.728 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:12:54.728 -07 000000551 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:12:54.728 -07 000000618 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 198 ms to get response, and 203 ms overall
17-03-17 18:12:54.738 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 18:12:54.738 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 13 ms.
17-03-17 18:12:54.738 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-17 18:12:54.748 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-17 18:12:54.938 -07 000000627 INF: FPGA: Recv YMVTILE
17-03-17 18:12:54.938 -07 000000512 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 385 ms overall
17-03-17 18:12:54.978 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:12:54.988 -07 000000012 INF: FPGA: Recv YRDPOS 129485
17-03-17 18:12:54.988 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:12:54.988 -07 000000512 INF: Y Motor: Encoder = 129485 = motor step 101160.2 = 63.2251 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:12:54.988 -07 000000512 INF: Y Motor: Position error before settling (table move) = -15 encoder counts (-0.007 mm)
17-03-17 18:12:54.988 -07 000000512 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 385 ms, distance = 0.837 mm, average velocity = 2.173 mm/sec
17-03-17 18:12:55.938 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:12:55.938 -07 000000459 INF: FPGA: Recv YRDPOS 129485
17-03-17 18:12:55.948 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:12:55.948 -07 000000512 INF: Y Motor: Encoder = 129485 = motor step 101160.2 = 63.2251 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:12:55.958 -07 000000512 INF: Y Motor: After move to 63.232609, error = -0.007511, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:12:55.968 -07 000000512 INF: Y Motor: Position error after settling (table move) = -15 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:12:55.968 -07 000000512 INF: Y Motor: Moved to 63.2251 after 1433 ms (table move)
17-03-17 18:12:55.968 -07 000000502 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139158 mm (DAC = 30399)
17-03-17 18:12:55.968 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:55.968 -07 000000512 INF: FPGA: Recv ZSGSRD 30951
17-03-17 18:12:55.978 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:12:55.978 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:55.978 -07 000000480 INF: FPGA: Recv ZSGSRD 30950
17-03-17 18:12:55.988 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:55.988 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:55.988 -07 000000486 INF: FPGA: Recv ZSGSRD 30955
17-03-17 18:12:55.998 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:55.998 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:55.998 -07 000000618 INF: FPGA: Recv ZSGSRD 30954
17-03-17 18:12:56.008 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:56.008 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:56.008 -07 000000415 INF: FPGA: Recv ZSGSRD 30953
17-03-17 18:12:56.018 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:56.018 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:56.018 -07 000000593 INF: FPGA: Recv ZSGSRD 30959
17-03-17 18:12:56.028 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:56.028 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:56.028 -07 000000618 INF: FPGA: Recv ZSGSRD 30949
17-03-17 18:12:56.038 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:56.038 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:56.038 -07 000000501 INF: FPGA: Recv ZSGSRD 30943
17-03-17 18:12:56.048 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:56.048 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:56.048 -07 000000593 INF: FPGA: Recv ZSGSRD 30949
17-03-17 18:12:56.058 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:56.058 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:56.058 -07 000000512 INF: FPGA: Recv ZSGSRD 30952
17-03-17 18:12:56.068 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:56.068 -07 000000502 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:12:56.068 -07 000000593 INF: FPGA: Recv ZPIEZORD 26834
17-03-17 18:12:56.078 -07 000000502 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:56.078 -07 000000502 INF: Z Motor: Piezo is near 37.3 V (nominally 0 to 100 V), expect near 46.4 V, since DAC is at 4.639 V. Piezo Error = -9.1 V.
17-03-17 18:12:56.078 -07 000000502 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.2 um, Read 10 ADC samples: Avg = 30952 (-138.4 uncal um), Error = 0.8 uncal um, Median = 30952 (-138.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 30943 (-138.3 uncal um), Max = 30959 (-138.4 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 18:12:56.078 -07 000000502 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30952, posNoise = 7, negNoise = 9
17-03-17 18:12:56.078 -07 000000502 INF: Z Motor: After move to -0.139158, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:12:56.078 -07 000000502 INF: Z Motor: Settle wait time = 1438 ms, measure time = 106 ms (allowed 150 ms), total time = 1544 ms
17-03-17 18:12:56.078 -07 000000502 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-17 18:12:56.128 -07 000000502 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1600 ms
17-03-17 18:12:56.128 -07 000000502 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:12:56.128 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:12:56.128 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:12:56.128 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:12:56.128 -07 000000459 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:12:56.128 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:12:56.128 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:12:56.138 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:12:56.138 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:12:56.138 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 18:12:56.138 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:12:56.148 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 18:12:56.148 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms.
17-03-17 18:12:56.148 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:12:56.198 -07 000000551 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:12:56.398 -07 000000551 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:12:56.398 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:12:56.398 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:12:56.398 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2268430664, 0x0, 559484976) start.
17-03-17 18:12:56.438 -07 000000593 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:12:56.438 -07 000000551 INF: FPGA: Recv CAMSNAP
17-03-17 18:12:56.438 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 274 ms to get response, and 285 ms overall
17-03-17 18:12:56.528 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2268430664, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 18:12:56.528 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:12:56.528 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-17 18:12:56.528 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 130 ms.
17-03-17 18:12:56.538 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:12:56.538 -07 000000551 INF: Autofocus start
17-03-17 18:12:56.538 -07 000000551 INF: MeasureProfile start
17-03-17 18:12:56.538 -07 000000486 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:12:56.548 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:12:56.548 -07 000000502 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:12:56.548 -07 000000551 INF: MeasureProfile done
17-03-17 18:12:56.548 -07 000000551 INF: X=0  Z correction [um]=-0.02394831
17-03-17 18:12:56.548 -07 000000551 INF: Autofocus finished
17-03-17 18:12:56.568 -07 000000486 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:12:56.568 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 9. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=90, R2=99, Total=189. Warn if over 250 bubbles per interval.
17-03-17 18:12:56.748 -07 000000415 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:12:56.748 -07 000000502 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:12:56.748 -07 000000610 INF: ------------ Scan Snapping tile 5 at Y-position 63.22509765625, Z-position -0.13916556622292. ----------
17-03-17 18:12:56.748 -07 000000610 INF: Cycle	10	Tile	5	Exposure Settings		A	392	G	188	T	188	C	392
17-03-17 18:12:56.758 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28907, sync = True, waitForSettling = True)
17-03-17 18:12:56.758 -07 000000610 INF: Z Motor: Moving to -0.132328 mm, started at -0.139166 mm, distance = 6.84 um
17-03-17 18:12:56.758 -07 000000610 INF: FPGA: Xmit ZDACW 28907\n [Z Motor]
17-03-17 18:12:56.758 -07 000000512 INF: FPGA: Recv ZDACW
17-03-17 18:12:56.768 -07 000000610 INF: FPGA: 'ZDACW 28907' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:12:56.768 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:12:56.768 -07 000000512 INF: FPGA: Recv ZDACR 28907
17-03-17 18:12:56.778 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:56.778 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:12:56.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:56.928 -07 000000512 INF: FPGA: Recv ZSGSRD 29891
17-03-17 18:12:56.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:56.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:56.938 -07 000000512 INF: FPGA: Recv ZSGSRD 29894
17-03-17 18:12:56.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:56.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:56.948 -07 000000618 INF: FPGA: Recv ZSGSRD 29889
17-03-17 18:12:56.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:56.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:56.958 -07 000000618 INF: FPGA: Recv ZSGSRD 29888
17-03-17 18:12:56.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:56.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:56.968 -07 000000512 INF: FPGA: Recv ZSGSRD 29887
17-03-17 18:12:56.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:56.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:56.978 -07 000000512 INF: FPGA: Recv ZSGSRD 29895
17-03-17 18:12:56.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:56.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:56.988 -07 000000512 INF: FPGA: Recv ZSGSRD 29894
17-03-17 18:12:56.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:56.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:56.998 -07 000000512 INF: FPGA: Recv ZSGSRD 29885
17-03-17 18:12:57.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:57.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:57.008 -07 000000512 INF: FPGA: Recv ZSGSRD 29893
17-03-17 18:12:57.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:57.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:57.018 -07 000000512 INF: FPGA: Recv ZSGSRD 29888
17-03-17 18:12:57.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:57.028 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:12:57.028 -07 000000618 INF: FPGA: Recv ZPIEZORD 25429
17-03-17 18:12:57.038 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:57.038 -07 000000610 INF: Z Motor: Piezo is near 34.3 V (nominally 0 to 100 V), expect near 44.1 V, since DAC is at 4.411 V. Piezo Error = -9.8 V.
17-03-17 18:12:57.038 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.3 um, Read 10 ADC samples: Avg = 29890 (-131.6 uncal um), Error = 0.8 uncal um, Median = 29890 (-131.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29885 (-131.5 uncal um), Max = 29895 (-131.6 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 18:12:57.038 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29890, posNoise = 5, negNoise = 5
17-03-17 18:12:57.038 -07 000000610 INF: Z Motor: After move to -0.132328, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:12:57.038 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 18:12:57.038 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:12:57.038 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:12:57.038 -07 000000551 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:12:57.038 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:12:57.038 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:12:57.038 -07 000000593 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:12:57.038 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:12:57.038 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:12:57.038 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 18:12:57.038 -07 000000593 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:12:57.038 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:12:57.038 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:12:57.048 -07 000000593 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 18:12:57.048 -07 000000593 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:12:57.048 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 18:12:57.048 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:12:57.058 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 18:12:57.058 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 18:12:57.068 -07 000000593 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 17 ms.
17-03-17 18:12:57.068 -07 000000593 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 18:12:57.068 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 392 392 188 188 29083 150\n [Camera]
17-03-17 18:12:57.268 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:12:57.658 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 584
17-03-17 18:12:57.658 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 584
17-03-17 18:12:57.658 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:12:57.658 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:12:57.658 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) start.
17-03-17 18:12:57.658 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 584
17-03-17 18:12:57.658 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 584
17-03-17 18:12:57.658 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:12:57.658 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:12:57.658 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) start.
17-03-17 18:12:57.848 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29083 777
17-03-17 18:12:57.998 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP turning grn on 927
17-03-17 18:12:58.038 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) end. Duration was 384 ms.
17-03-17 18:12:58.038 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 18:12:58.048 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:12:58.048 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:12:58.048 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 18:12:58.048 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) end. Duration was 385 ms.
17-03-17 18:12:58.048 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-17 18:12:58.048 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:12:58.048 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-17 18:12:58.058 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 18:12:58.088 -07 000000415 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 10, FrontChillerTemperature: 3.99219,
17-03-17 18:12:58.188 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1115
17-03-17 18:12:58.188 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1115
17-03-17 18:12:58.188 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:12:58.318 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1115
17-03-17 18:12:58.318 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1115
17-03-17 18:12:58.318 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:12:58.318 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:12:58.318 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 2620985504, 0x0, 391868352) start.
17-03-17 18:12:58.328 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:12:58.328 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-17 18:12:58.378 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP 1307
17-03-17 18:12:58.378 -07 000000501 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:12:58.378 -07 000000610 INF: FPGA: 'CAMDBLSNAP 392 392 188 188 29083 150' command took 2 ms to send, 1306 ms to get response, and 1315 ms overall
17-03-17 18:12:58.378 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 18:12:58.378 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 6 at Y-position 63.22509765625, Z-Position -0.13234305292837. ------
17-03-17 18:12:58.388 -07 000000480 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.0626 mm, moving Z to -0.13884 mm
17-03-17 18:12:58.388 -07 000000480 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:12:58.388 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:12:58.388 -07 000000459 INF: Y Motor: Entering MoveAbsStepped (target = 102500 steps, sync = True, waitForSettling = True)
17-03-17 18:12:58.388 -07 000000459 INF: Y Motor: Moving to 64.0626 mm, started at 63.2251 mm, delta = 0.8375 mm
17-03-17 18:12:58.388 -07 000000501 INF: Z Motor: Entering MoveAbsStepped (DAC = 30330, sync = True, waitForSettling = False)
17-03-17 18:12:58.388 -07 000000501 INF: Z Motor: Moving to -0.138842 mm, started at -0.132343 mm, distance = -6.50 um
17-03-17 18:12:58.388 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:12:58.398 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 1 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:12:58.398 -07 000000501 INF: FPGA: Xmit ZDACW 30330\n [Z Motor]
17-03-17 18:12:58.398 -07 000000593 INF: FPGA: Recv ZDACW
17-03-17 18:12:58.408 -07 000000459 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:12:58.408 -07 000000501 INF: FPGA: 'ZDACW 30330' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-17 18:12:58.408 -07 000000551 INF: FPGA: Recv YRDPOS 129485
17-03-17 18:12:58.418 -07 000000512 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:12:58.418 -07 000000459 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-17 18:12:58.418 -07 000000459 INF: Y Motor: Encoder = 129485 = motor step 101160.2 = 63.2251 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:12:58.418 -07 000000459 INF: Y Motor: Last commanded position = 63.2326 mm (101172.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:12:58.418 -07 000000459 INF: Y Motor: Moving 1340 steps-15
17-03-17 18:12:58.428 -07 000000501 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:12:58.428 -07 000000593 INF: FPGA: Recv ZDACR 30330
17-03-17 18:12:58.438 -07 000000501 INF: FPGA: 'ZDACR' command took 2 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:12:58.438 -07 000000501 INF: Z Motor: MoveAbsStepped took 45 ms (did NOT wait for settling yet))
17-03-17 18:12:58.448 -07 000000459 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:12:58.618 -07 000000618 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:12:58.618 -07 000000512 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 18:12:58.718 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 391 ms.
17-03-17 18:12:58.718 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 18:12:58.718 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:12:58.718 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 2620985504, 0x0, 391868352) end. Duration was 398 ms.
17-03-17 18:12:58.718 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 18:12:58.718 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:12:58.718 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:12:58.718 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:12:58.718 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 533 ms.
17-03-17 18:12:58.728 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 408 ms.
17-03-17 18:12:58.818 -07 000000512 INF: FPGA: Recv YMVTILE
17-03-17 18:12:58.818 -07 000000459 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 407 ms overall
17-03-17 18:12:58.858 -07 000000459 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:12:58.858 -07 000000486 INF: FPGA: Recv YRDPOS 131190
17-03-17 18:12:58.868 -07 000000459 INF: FPGA: 'YRDPOS' command took 1 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:12:58.868 -07 000000459 INF: Y Motor: Encoder = 131190 = motor step 102492.2 = 64.0576 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:12:58.868 -07 000000459 INF: Y Motor: Position error before settling (table move) = -10 encoder counts (-0.005 mm)
17-03-17 18:12:58.868 -07 000000459 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 408 ms, distance = 0.838 mm, average velocity = 2.053 mm/sec
17-03-17 18:12:59.818 -07 000000459 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:12:59.818 -07 000000502 INF: FPGA: Recv YRDPOS 131190
17-03-17 18:12:59.828 -07 000000459 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:59.828 -07 000000459 INF: Y Motor: Encoder = 131190 = motor step 102492.2 = 64.0576 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:12:59.838 -07 000000459 INF: Y Motor: After move to 64.062607, error = -0.004990, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:12:59.838 -07 000000459 INF: Y Motor: Position error after settling (table move) = -10 encoder counts (-0.005 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:12:59.838 -07 000000459 INF: Y Motor: Moved to 64.0576 after 1451 ms (table move)
17-03-17 18:12:59.838 -07 000000480 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138842 mm (DAC = 30330)
17-03-17 18:12:59.838 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:59.848 -07 000000501 INF: FPGA: Recv ZSGSRD 30910
17-03-17 18:12:59.848 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 2 ms overall
17-03-17 18:12:59.848 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:59.848 -07 000000501 INF: FPGA: Recv ZSGSRD 30904
17-03-17 18:12:59.858 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:12:59.858 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:59.858 -07 000000502 INF: FPGA: Recv ZSGSRD 30912
17-03-17 18:12:59.868 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:59.868 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:59.868 -07 000000502 INF: FPGA: Recv ZSGSRD 30908
17-03-17 18:12:59.878 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:59.878 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:59.878 -07 000000502 INF: FPGA: Recv ZSGSRD 30904
17-03-17 18:12:59.888 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:59.888 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:59.888 -07 000000502 INF: FPGA: Recv ZSGSRD 30909
17-03-17 18:12:59.898 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:59.898 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:59.898 -07 000000502 INF: FPGA: Recv ZSGSRD 30903
17-03-17 18:12:59.908 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:59.908 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:59.908 -07 000000512 INF: FPGA: Recv ZSGSRD 30896
17-03-17 18:12:59.918 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:59.918 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:59.918 -07 000000512 INF: FPGA: Recv ZSGSRD 30894
17-03-17 18:12:59.928 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:59.928 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:12:59.928 -07 000000618 INF: FPGA: Recv ZSGSRD 30903
17-03-17 18:12:59.938 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:59.938 -07 000000480 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:12:59.938 -07 000000459 INF: FPGA: Recv ZPIEZORD 26748
17-03-17 18:12:59.948 -07 000000480 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:12:59.948 -07 000000480 INF: Z Motor: Piezo is near 37.1 V (nominally 0 to 100 V), expect near 46.3 V, since DAC is at 4.628 V. Piezo Error = -9.1 V.
17-03-17 18:12:59.948 -07 000000480 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.8 um, Read 10 ADC samples: Avg = 30904 (-138.1 uncal um), Error = 0.8 uncal um, Median = 30904 (-138.1 uncal um), StdDev = 6 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 30894 (-138.0 uncal um), Max = 30912 (-138.1 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-17 18:12:59.948 -07 000000480 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30904, posNoise = 8, negNoise = 10
17-03-17 18:12:59.948 -07 000000480 INF: Z Motor: After move to -0.138842, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:12:59.948 -07 000000480 INF: Z Motor: Settle wait time = 1454 ms, measure time = 101 ms (allowed 150 ms), total time = 1555 ms
17-03-17 18:12:59.948 -07 000000480 INF: Z Motor: Waiting extra 49 ms after reading position to reach expected total of 150 ms
17-03-17 18:12:59.998 -07 000000480 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1607 ms
17-03-17 18:12:59.998 -07 000000480 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:12:59.998 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:12:59.998 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:12:59.998 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:12:59.998 -07 000000459 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:12:59.998 -07 000000512 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:13:00.008 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:13:00.008 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:13:00.008 -07 000000512 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:13:00.008 -07 000000512 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:13:00.008 -07 000000512 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:13:00.018 -07 000000512 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-17 18:13:00.018 -07 000000512 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms.
17-03-17 18:13:00.028 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:13:00.068 -07 000000512 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:13:00.268 -07 000000502 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:13:00.268 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:13:00.268 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:13:00.268 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2281705520, 0x0, 559484976) start.
17-03-17 18:13:00.308 -07 000000551 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:13:00.308 -07 000000593 INF: FPGA: Recv CAMSNAP
17-03-17 18:13:00.308 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 276 ms to get response, and 284 ms overall
17-03-17 18:13:00.398 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2281705520, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 18:13:00.398 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:13:00.398 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 18:13:00.398 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 18:13:00.508 -07 000000459 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:13:00.508 -07 000000480 INF: Autofocus start
17-03-17 18:13:00.508 -07 000000480 INF: MeasureProfile start
17-03-17 18:13:00.508 -07 000000512 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:13:00.518 -07 000000459 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:13:00.518 -07 000000459 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:13:00.518 -07 000000480 INF: MeasureProfile done
17-03-17 18:13:00.518 -07 000000480 INF: X=16  Z correction [um]=0.0530179
17-03-17 18:13:00.518 -07 000000480 INF: Autofocus finished
17-03-17 18:13:00.718 -07 000000415 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:13:00.718 -07 000000459 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:13:00.718 -07 000000610 INF: ------------ Scan Snapping tile 6 at Y-position 64.0576171875, Z-position -0.138857204040116. ----------
17-03-17 18:13:00.718 -07 000000610 INF: Cycle	10	Tile	6	Exposure Settings		A	392	G	188	T	188	C	392
17-03-17 18:13:00.728 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28854, sync = True, waitForSettling = True)
17-03-17 18:13:00.728 -07 000000610 INF: Z Motor: Moving to -0.132085 mm, started at -0.138857 mm, distance = 6.77 um
17-03-17 18:13:00.728 -07 000000610 INF: FPGA: Xmit ZDACW 28854\n [Z Motor]
17-03-17 18:13:00.728 -07 000000551 INF: FPGA: Recv ZDACW
17-03-17 18:13:00.738 -07 000000610 INF: FPGA: 'ZDACW 28854' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:00.738 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:13:00.738 -07 000000512 INF: FPGA: Recv ZDACR 28854
17-03-17 18:13:00.748 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:00.748 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:13:00.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:13:00.898 -07 000000512 INF: FPGA: Recv ZSGSRD 29852
17-03-17 18:13:00.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:00.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:13:00.908 -07 000000486 INF: FPGA: Recv ZSGSRD 29849
17-03-17 18:13:00.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:00.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:13:00.918 -07 000000551 INF: FPGA: Recv ZSGSRD 29855
17-03-17 18:13:00.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:00.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:13:00.928 -07 000000618 INF: FPGA: Recv ZSGSRD 29850
17-03-17 18:13:00.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:00.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:13:00.938 -07 000000459 INF: FPGA: Recv ZSGSRD 29851
17-03-17 18:13:00.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:00.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:13:00.948 -07 000000415 INF: FPGA: Recv ZSGSRD 29855
17-03-17 18:13:00.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:00.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:13:00.958 -07 000000593 INF: FPGA: Recv ZSGSRD 29850
17-03-17 18:13:00.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:00.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:13:00.968 -07 000000415 INF: FPGA: Recv ZSGSRD 29849
17-03-17 18:13:00.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:00.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:13:00.978 -07 000000459 INF: FPGA: Recv ZSGSRD 29851
17-03-17 18:13:00.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:00.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:13:00.988 -07 000000415 INF: FPGA: Recv ZSGSRD 29853
17-03-17 18:13:00.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:00.998 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:13:00.998 -07 000000512 INF: FPGA: Recv ZPIEZORD 25391
17-03-17 18:13:01.008 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:01.008 -07 000000610 INF: Z Motor: Piezo is near 34.2 V (nominally 0 to 100 V), expect near 44.0 V, since DAC is at 4.403 V. Piezo Error = -9.8 V.
17-03-17 18:13:01.008 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.1 um, Read 10 ADC samples: Avg = 29852 (-131.3 uncal um), Error = 0.8 uncal um, Median = 29851 (-131.3 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 29849 (-131.3 uncal um), Max = 29855 (-131.3 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 18:13:01.008 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29852, posNoise = 3, negNoise = 3
17-03-17 18:13:01.008 -07 000000610 INF: Z Motor: After move to -0.132085, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:13:01.008 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 18:13:01.008 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:13:01.008 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:13:01.008 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:13:01.008 -07 000000551 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:13:01.008 -07 000000608 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:13:01.008 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:13:01.008 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:13:01.008 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:13:01.008 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 18:13:01.008 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:13:01.008 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:13:01.008 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:13:01.008 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 18:13:01.008 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:13:01.018 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-17 18:13:01.018 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:13:01.028 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms.
17-03-17 18:13:01.028 -07 000000608 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 19 ms.
17-03-17 18:13:01.028 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 18:13:01.028 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 18:13:01.038 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 392 392 188 188 29031 150\n [Camera]
17-03-17 18:13:01.238 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:13:01.568 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:13:01.568 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 9. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=90, R2=99, Total=189. Warn if over 250 bubbles per interval.
17-03-17 18:13:01.628 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 584
17-03-17 18:13:01.628 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 584
17-03-17 18:13:01.628 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:13:01.628 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 584
17-03-17 18:13:01.628 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 584
17-03-17 18:13:01.628 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:13:01.638 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:13:01.638 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 2300786904, 0x0, 391868352) start.
17-03-17 18:13:01.638 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:13:01.638 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2336209168, 0x0, 418435064) start.
17-03-17 18:13:01.818 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29031 777
17-03-17 18:13:01.968 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP turning grn on 927
17-03-17 18:13:02.038 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 2300786904, 0x0, 391868352) end. Duration was 397 ms.
17-03-17 18:13:02.038 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 18:13:02.038 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:13:02.038 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2336209168, 0x0, 418435064) end. Duration was 397 ms.
17-03-17 18:13:02.038 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-17 18:13:02.038 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:13:02.038 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:13:02.038 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 410 ms.
17-03-17 18:13:02.038 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:13:02.048 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 418 ms.
17-03-17 18:13:02.158 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1115
17-03-17 18:13:02.158 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1115
17-03-17 18:13:02.158 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:13:02.278 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1115
17-03-17 18:13:02.288 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1115
17-03-17 18:13:02.288 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:13:02.288 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:13:02.288 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 18:13:02.288 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:13:02.288 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-17 18:13:02.348 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP 1308
17-03-17 18:13:02.348 -07 000000512 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:13:02.348 -07 000000610 INF: FPGA: 'CAMDBLSNAP 392 392 188 188 29031 150' command took 2 ms to send, 1305 ms to get response, and 1314 ms overall
17-03-17 18:13:02.348 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 18:13:02.348 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 7 at Y-position 64.0576171875, Z-Position -0.132098932866983. ------
17-03-17 18:13:02.358 -07 000000618 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:13:02.358 -07 000000415 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.8926 mm, moving Z to -0.13858 mm
17-03-17 18:13:02.358 -07 000000415 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:13:02.358 -07 000000433 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:13:02.358 -07 000000512 INF: Y Motor: Entering MoveAbsStepped (target = 103828 steps, sync = True, waitForSettling = True)
17-03-17 18:13:02.358 -07 000000593 INF: Z Motor: Entering MoveAbsStepped (DAC = 30274, sync = True, waitForSettling = False)
17-03-17 18:13:02.358 -07 000000593 INF: Z Motor: Moving to -0.138585 mm, started at -0.132099 mm, distance = -6.49 um
17-03-17 18:13:02.358 -07 000000512 INF: Y Motor: Moving to 64.8926 mm, started at 64.0576 mm, delta = 0.8350 mm
17-03-17 18:13:02.368 -07 000000618 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:02.368 -07 000000593 INF: FPGA: Xmit ZDACW 30274\n [Z Motor]
17-03-17 18:13:02.368 -07 000000459 INF: FPGA: Recv ZDACW
17-03-17 18:13:02.378 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:13:02.378 -07 000000593 INF: FPGA: 'ZDACW 30274' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-17 18:13:02.378 -07 000000433 INF: FPGA: Recv YRDPOS 131191
17-03-17 18:13:02.388 -07 000000618 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:13:02.388 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-17 18:13:02.388 -07 000000512 INF: Y Motor: Encoder = 131191 = motor step 102493.0 = 64.0581 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:13:02.388 -07 000000512 INF: Y Motor: Last commanded position = 64.0626 mm (102500.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:13:02.388 -07 000000512 INF: Y Motor: Moving 1335 steps-10
17-03-17 18:13:02.398 -07 000000593 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:13:02.398 -07 000000551 INF: FPGA: Recv ZDACR 30274
17-03-17 18:13:02.408 -07 000000512 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:13:02.408 -07 000000593 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:13:02.408 -07 000000593 INF: Z Motor: MoveAbsStepped took 46 ms (did NOT wait for settling yet))
17-03-17 18:13:02.588 -07 000000593 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:13:02.588 -07 000000618 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 222 ms overall
17-03-17 18:13:02.668 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 379 ms.
17-03-17 18:13:02.668 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 374 ms.
17-03-17 18:13:02.668 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 375 ms.
17-03-17 18:13:02.668 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:13:02.668 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-17 18:13:02.668 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:13:02.668 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 18:13:02.668 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 512 ms.
17-03-17 18:13:02.668 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 18:13:02.678 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-17 18:13:02.788 -07 000000501 INF: FPGA: Recv YMVTILE
17-03-17 18:13:02.788 -07 000000512 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 371 ms to get response, and 394 ms overall
17-03-17 18:13:02.818 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:13:02.818 -07 000000501 INF: FPGA: Recv YRDPOS 132873
17-03-17 18:13:02.828 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:13:02.828 -07 000000512 INF: Y Motor: Encoder = 132873 = motor step 103807.0 = 64.8794 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:13:02.828 -07 000000512 INF: Y Motor: Position error before settling (table move) = -27 encoder counts (-0.013 mm)
17-03-17 18:13:02.828 -07 000000512 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.835 mm, average velocity = 2.119 mm/sec
17-03-17 18:13:03.458 -07 000000459 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 10, FrontChillerTemperature: 3.994908,
17-03-17 18:13:03.778 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:13:03.778 -07 000000480 INF: FPGA: Recv YRDPOS 132873
17-03-17 18:13:03.788 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:13:03.788 -07 000000512 INF: Y Motor: Encoder = 132873 = motor step 103807.0 = 64.8794 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:13:03.808 -07 000000512 INF: Y Motor: After move to 64.892609, error = -0.013214, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:13:03.808 -07 000000512 INF: Y Motor: Position error after settling (table move) = -27 encoder counts (-0.013 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:13:03.808 -07 000000512 INF: Y Motor: Moved to 64.8794 after 1446 ms (table move)
17-03-17 18:13:03.808 -07 000000415 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138585 mm (DAC = 30274)
17-03-17 18:13:03.828 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:13:03.828 -07 000000618 INF: FPGA: Recv ZSGSRD 30860
17-03-17 18:13:03.838 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-17 18:13:03.848 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:13:03.848 -07 000000480 INF: FPGA: Recv ZSGSRD 30861
17-03-17 18:13:03.858 -07 000000415 INF: FPGA: 'ZSGSRD' command took 2 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 18:13:03.868 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:13:03.868 -07 000000459 INF: FPGA: Recv ZSGSRD 30859
17-03-17 18:13:03.878 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 18:13:03.878 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:13:03.878 -07 000000551 INF: FPGA: Recv ZSGSRD 30856
17-03-17 18:13:03.888 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:13:03.898 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:13:03.898 -07 000000501 INF: FPGA: Recv ZSGSRD 30857
17-03-17 18:13:03.908 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 18:13:03.908 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:13:03.908 -07 000000551 INF: FPGA: Recv ZSGSRD 30869
17-03-17 18:13:03.918 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:03.918 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:13:03.918 -07 000000480 INF: FPGA: Recv ZSGSRD 30863
17-03-17 18:13:03.928 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:03.928 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:13:03.928 -07 000000501 INF: FPGA: Recv ZSGSRD 30866
17-03-17 18:13:03.938 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:03.938 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:13:03.938 -07 000000433 INF: FPGA: Recv ZSGSRD 30871
17-03-17 18:13:03.948 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:03.948 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:13:03.948 -07 000000502 INF: FPGA: Recv ZSGSRD 30858
17-03-17 18:13:03.958 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:03.958 -07 000000415 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:13:03.958 -07 000000512 INF: FPGA: Recv ZPIEZORD 26744
17-03-17 18:13:03.968 -07 000000415 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:03.968 -07 000000415 INF: Z Motor: Piezo is near 37.1 V (nominally 0 to 100 V), expect near 46.2 V, since DAC is at 4.620 V. Piezo Error = -9.1 V.
17-03-17 18:13:03.968 -07 000000415 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.6 um, Read 10 ADC samples: Avg = 30862 (-137.8 uncal um), Error = 0.8 uncal um, Median = 30860 (-137.8 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 30856 (-137.7 uncal um), Max = 30871 (-137.8 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 18:13:03.968 -07 000000415 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30862, posNoise = 9, negNoise = 6
17-03-17 18:13:03.968 -07 000000415 INF: Z Motor: After move to -0.138585, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:13:03.968 -07 000000415 INF: Z Motor: Settle wait time = 1449 ms, measure time = 157 ms (allowed 150 ms), total time = 1606 ms
17-03-17 18:13:03.968 -07 000000415 INF: Z Motor: Warning: Actual position measuring time = 157 ms, longer than max expected time of 150 ms
17-03-17 18:13:03.968 -07 000000415 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1610 ms
17-03-17 18:13:03.968 -07 000000415 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:13:03.968 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:13:03.968 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:13:03.968 -07 000000593 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:13:03.968 -07 000000551 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:13:03.968 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:13:03.968 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:13:03.978 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:13:03.978 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:13:03.978 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:13:03.978 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:13:03.988 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 18:13:03.988 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 13 ms.
17-03-17 18:13:03.988 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:13:04.028 -07 000000480 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:13:04.228 -07 000000480 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:13:04.228 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:13:04.228 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:13:04.238 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2281705520, 0x0, 559484976) start.
17-03-17 18:13:04.268 -07 000000618 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:13:04.268 -07 000000480 INF: FPGA: Recv CAMSNAP
17-03-17 18:13:04.268 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 278 ms to get response, and 284 ms overall
17-03-17 18:13:04.348 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2281705520, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 18:13:04.348 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:13:04.348 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 18:13:04.348 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-17 18:13:04.368 -07 000000502 INF: Autofocus start
17-03-17 18:13:04.368 -07 000000551 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:13:04.368 -07 000000502 INF: MeasureProfile start
17-03-17 18:13:04.368 -07 000000512 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:13:04.378 -07 000000551 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:13:04.378 -07 000000551 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:13:04.378 -07 000000502 INF: MeasureProfile done
17-03-17 18:13:04.378 -07 000000502 INF: X=16  Z correction [um]=0.0530179
17-03-17 18:13:04.378 -07 000000502 INF: Autofocus finished
17-03-17 18:13:04.578 -07 000000480 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:13:04.578 -07 000000551 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:13:04.578 -07 000000610 INF: ------------ Scan Snapping tile 7 at Y-position 64.87939453125, Z-position -0.138587387130162. ----------
17-03-17 18:13:04.588 -07 000000610 INF: Cycle	10	Tile	7	Exposure Settings		A	392	G	188	T	188	C	392
17-03-17 18:13:04.588 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28798, sync = True, waitForSettling = True)
17-03-17 18:13:04.588 -07 000000610 INF: Z Motor: Moving to -0.131829 mm, started at -0.138587 mm, distance = 6.76 um
17-03-17 18:13:04.588 -07 000000610 INF: FPGA: Xmit ZDACW 28798\n [Z Motor]
17-03-17 18:13:04.588 -07 000000502 INF: FPGA: Recv ZDACW
17-03-17 18:13:04.598 -07 000000610 INF: FPGA: 'ZDACW 28798' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 18:13:04.598 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:13:04.598 -07 000000502 INF: FPGA: Recv ZDACR 28798
17-03-17 18:13:04.608 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:04.608 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:13:04.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:13:04.758 -07 000000618 INF: FPGA: Recv ZSGSRD 29807
17-03-17 18:13:04.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:13:04.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:13:04.768 -07 000000502 INF: FPGA: Recv ZSGSRD 29811
17-03-17 18:13:04.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:04.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:13:04.778 -07 000000618 INF: FPGA: Recv ZSGSRD 29812
17-03-17 18:13:04.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:04.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:13:04.788 -07 000000502 INF: FPGA: Recv ZSGSRD 29812
17-03-17 18:13:04.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:04.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:13:04.798 -07 000000618 INF: FPGA: Recv ZSGSRD 29807
17-03-17 18:13:04.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:04.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:13:04.808 -07 000000502 INF: FPGA: Recv ZSGSRD 29809
17-03-17 18:13:04.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:04.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:13:04.818 -07 000000618 INF: FPGA: Recv ZSGSRD 29813
17-03-17 18:13:04.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:04.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:13:04.828 -07 000000501 INF: FPGA: Recv ZSGSRD 29805
17-03-17 18:13:04.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:04.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:13:04.838 -07 000000501 INF: FPGA: Recv ZSGSRD 29804
17-03-17 18:13:04.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:04.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:13:04.848 -07 000000501 INF: FPGA: Recv ZSGSRD 29807
17-03-17 18:13:04.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:04.858 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:13:04.858 -07 000000501 INF: FPGA: Recv ZPIEZORD 25367
17-03-17 18:13:04.868 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:04.868 -07 000000610 INF: Z Motor: Piezo is near 34.2 V (nominally 0 to 100 V), expect near 43.9 V, since DAC is at 4.394 V. Piezo Error = -9.8 V.
17-03-17 18:13:04.868 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.8 um, Read 10 ADC samples: Avg = 29809 (-131.0 uncal um), Error = 0.8 uncal um, Median = 29808 (-131.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29804 (-131.0 uncal um), Max = 29813 (-131.1 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 18:13:04.868 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29809, posNoise = 4, negNoise = 5
17-03-17 18:13:04.868 -07 000000610 INF: Z Motor: After move to -0.131829, error = 0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:13:04.868 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-17 18:13:04.868 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:13:04.868 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:13:04.868 -07 000000551 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:13:04.868 -07 000000459 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:13:04.868 -07 000000433 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:13:04.868 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:13:04.868 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:13:04.868 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:13:04.868 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:13:04.868 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:13:04.868 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:13:04.868 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:13:04.878 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 18:13:04.878 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:13:04.878 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 18:13:04.878 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:13:04.888 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 18:13:04.888 -07 000000433 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 18:13:04.888 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 18:13:04.888 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 18:13:04.898 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 392 392 188 188 28975 150\n [Camera]
17-03-17 18:13:05.098 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP turning red on 195
17-03-17 18:13:05.488 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 586
17-03-17 18:13:05.488 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 586
17-03-17 18:13:05.488 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:13:05.488 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:13:05.488 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 2468220576, 0x0, 391868352) start.
17-03-17 18:13:05.488 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 586
17-03-17 18:13:05.488 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 586
17-03-17 18:13:05.488 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:13:05.488 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:13:05.488 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 2503642840, 0x0, 418435064) start.
17-03-17 18:13:05.678 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28975 777
17-03-17 18:13:05.828 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP turning grn on 927
17-03-17 18:13:05.868 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 2503642840, 0x0, 418435064) end. Duration was 377 ms.
17-03-17 18:13:05.868 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-17 18:13:05.868 -07 000000433 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:13:05.868 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:13:05.878 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 18:13:05.988 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 2468220576, 0x0, 391868352) end. Duration was 497 ms.
17-03-17 18:13:05.988 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 497 ms.
17-03-17 18:13:05.988 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:13:05.988 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-17 18:13:05.988 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 501 ms.
17-03-17 18:13:06.018 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1115
17-03-17 18:13:06.018 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1115
17-03-17 18:13:06.018 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:13:06.018 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1115
17-03-17 18:13:06.018 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1115
17-03-17 18:13:06.018 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:13:06.018 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:13:06.018 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 18:13:06.028 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:13:06.028 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-17 18:13:06.208 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP 1307
17-03-17 18:13:06.208 -07 000000501 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:13:06.208 -07 000000610 INF: FPGA: 'CAMDBLSNAP 392 392 188 188 28975 150' command took 2 ms to send, 1305 ms to get response, and 1314 ms overall
17-03-17 18:13:06.208 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 18:13:06.208 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 8 at Y-position 64.87939453125, Z-Position -0.131822691744887. ------
17-03-17 18:13:06.218 -07 000000593 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:13:06.218 -07 000000551 INF: Y Motor: MoveYZ optimized starting. Moving Y to 65.7226 mm, moving Z to -0.13841 mm
17-03-17 18:13:06.218 -07 000000551 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:13:06.218 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:13:06.218 -07 000000433 INF: Y Motor: Entering MoveAbsStepped (target = 105156 steps, sync = True, waitForSettling = True)
17-03-17 18:13:06.218 -07 000000433 INF: Y Motor: Moving to 65.7226 mm, started at 64.8794 mm, delta = 0.8432 mm
17-03-17 18:13:06.218 -07 000000501 INF: Z Motor: Entering MoveAbsStepped (DAC = 30235, sync = True, waitForSettling = False)
17-03-17 18:13:06.218 -07 000000501 INF: Z Motor: Moving to -0.138407 mm, started at -0.131823 mm, distance = -6.58 um
17-03-17 18:13:06.228 -07 000000593 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:06.228 -07 000000433 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:13:06.228 -07 000000512 INF: FPGA: Recv YRDPOS 132874
17-03-17 18:13:06.238 -07 000000501 INF: FPGA: Xmit ZDACW 30235\n [Z Motor]
17-03-17 18:13:06.238 -07 000000433 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-17 18:13:06.238 -07 000000433 INF: Y Motor: Encoder = 132874 = motor step 103807.8 = 64.8799 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:13:06.238 -07 000000512 INF: FPGA: Recv ZDACW
17-03-17 18:13:06.238 -07 000000433 INF: Y Motor: Last commanded position = 64.8926 mm (103828.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:13:06.238 -07 000000433 INF: Y Motor: Moving 1348 steps-27
17-03-17 18:13:06.248 -07 000000593 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:13:06.248 -07 000000501 INF: FPGA: 'ZDACW 30235' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-17 18:13:06.258 -07 000000433 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:13:06.268 -07 000000501 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:13:06.268 -07 000000415 INF: FPGA: Recv ZDACR 30235
17-03-17 18:13:06.278 -07 000000501 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:13:06.278 -07 000000501 INF: Z Motor: MoveAbsStepped took 54 ms (did NOT wait for settling yet))
17-03-17 18:13:06.418 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 396 ms.
17-03-17 18:13:06.418 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 18:13:06.418 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:13:06.418 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 399 ms.
17-03-17 18:13:06.418 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 18:13:06.418 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:13:06.428 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:13:06.428 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-17 18:13:06.428 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:13:06.428 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-17 18:13:06.448 -07 000000501 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:13:06.448 -07 000000593 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 18:13:06.568 -07 000000459 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:13:06.568 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 9. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=90, R2=99, Total=189. Warn if over 250 bubbles per interval.
17-03-17 18:13:06.628 -07 000000593 INF: FPGA: Recv YMVTILE
17-03-17 18:13:06.628 -07 000000433 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 394 ms overall
17-03-17 18:13:06.668 -07 000000433 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:13:06.668 -07 000000593 INF: FPGA: Recv YRDPOS 134584
17-03-17 18:13:06.678 -07 000000433 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:06.678 -07 000000433 INF: Y Motor: Encoder = 134584 = motor step 105143.8 = 65.7148 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:13:06.678 -07 000000433 INF: Y Motor: Position error before settling (table move) = -16 encoder counts (-0.008 mm)
17-03-17 18:13:06.678 -07 000000433 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.843 mm, average velocity = 2.140 mm/sec
17-03-17 18:13:07.628 -07 000000433 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:13:07.628 -07 000000502 INF: FPGA: Recv YRDPOS 134584
17-03-17 18:13:07.638 -07 000000433 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:13:07.638 -07 000000433 INF: Y Motor: Encoder = 134584 = motor step 105143.8 = 65.7148 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:13:07.658 -07 000000433 INF: Y Motor: After move to 65.722610, error = -0.007767, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:13:07.658 -07 000000433 INF: Y Motor: Position error after settling (table move) = -16 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:13:07.658 -07 000000433 INF: Y Motor: Moved to 65.7148 after 1436 ms (table move)
17-03-17 18:13:07.658 -07 000000551 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138407 mm (DAC = 30235)
17-03-17 18:13:07.658 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:13:07.658 -07 000000480 INF: FPGA: Recv ZSGSRD 30832
17-03-17 18:13:07.668 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 18:13:07.668 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:13:07.668 -07 000000480 INF: FPGA: Recv ZSGSRD 30831
17-03-17 18:13:07.678 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:07.678 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:13:07.678 -07 000000459 INF: FPGA: Recv ZSGSRD 30831
17-03-17 18:13:07.688 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:07.688 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:13:07.688 -07 000000512 INF: FPGA: Recv ZSGSRD 30841
17-03-17 18:13:07.698 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:07.698 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:13:07.698 -07 000000433 INF: FPGA: Recv ZSGSRD 30840
17-03-17 18:13:07.708 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:07.708 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:13:07.708 -07 000000433 INF: FPGA: Recv ZSGSRD 30836
17-03-17 18:13:07.718 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:07.718 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:13:07.718 -07 000000618 INF: FPGA: Recv ZSGSRD 30832
17-03-17 18:13:07.728 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:07.728 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:13:07.728 -07 000000618 INF: FPGA: Recv ZSGSRD 30830
17-03-17 18:13:07.738 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:07.738 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:13:07.738 -07 000000512 INF: FPGA: Recv ZSGSRD 30834
17-03-17 18:13:07.748 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:07.748 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:13:07.748 -07 000000512 INF: FPGA: Recv ZSGSRD 30829
17-03-17 18:13:07.758 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:07.758 -07 000000551 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:13:07.758 -07 000000512 INF: FPGA: Recv ZPIEZORD 26732
17-03-17 18:13:07.768 -07 000000551 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:13:07.768 -07 000000551 INF: Z Motor: Piezo is near 37.1 V (nominally 0 to 100 V), expect near 46.1 V, since DAC is at 4.614 V. Piezo Error = -9.0 V.
17-03-17 18:13:07.768 -07 000000551 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.4 um, Read 10 ADC samples: Avg = 30834 (-137.6 uncal um), Error = 0.8 uncal um, Median = 30832 (-137.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 30829 (-137.6 uncal um), Max = 30841 (-137.7 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 18:13:07.768 -07 000000551 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30834, posNoise = 7, negNoise = 5
17-03-17 18:13:07.768 -07 000000551 INF: Z Motor: After move to -0.138407, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:13:07.768 -07 000000551 INF: Z Motor: Settle wait time = 1438 ms, measure time = 106 ms (allowed 150 ms), total time = 1544 ms
17-03-17 18:13:07.768 -07 000000551 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-17 18:13:07.818 -07 000000551 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1599 ms
17-03-17 18:13:07.818 -07 000000551 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:13:07.818 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:13:07.818 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:13:07.818 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:13:07.818 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:13:07.818 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:13:07.818 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:13:07.818 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:13:07.818 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:13:07.828 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:13:07.828 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:13:07.838 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-17 18:13:07.838 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-17 18:13:07.838 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:13:07.888 -07 000000551 INF: FPGA: Recv @CAMSNAP turning led on 41
17-03-17 18:13:08.088 -07 000000551 INF: FPGA: Recv @CAMSNAP img rdy 241
17-03-17 18:13:08.088 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 241
17-03-17 18:13:08.088 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:13:08.088 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 675221432, 0x0, 559484976) start.
17-03-17 18:13:08.128 -07 000000512 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:13:08.128 -07 000000382 INF: FPGA: Recv CAMSNAP
17-03-17 18:13:08.128 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 282 ms to get response, and 285 ms overall
17-03-17 18:13:08.218 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 675221432, 0x0, 559484976) end. Duration was 128 ms.
17-03-17 18:13:08.218 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:13:08.218 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 18:13:08.218 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 130 ms.
17-03-17 18:13:08.228 -07 000000480 INF: Autofocus start
17-03-17 18:13:08.228 -07 000000480 INF: MeasureProfile start
17-03-17 18:13:08.228 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:13:08.228 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:13:08.238 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:13:08.238 -07 000000512 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:13:08.238 -07 000000480 INF: MeasureProfile done
17-03-17 18:13:08.238 -07 000000480 INF: X=-3  Z correction [um]=-0.01800644
17-03-17 18:13:08.238 -07 000000480 INF: Autofocus finished
17-03-17 18:13:08.438 -07 000000618 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:13:08.438 -07 000000512 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:13:08.438 -07 000000610 INF: ------------ Scan Snapping tile 8 at Y-position 65.71484375, Z-position -0.138407509190192. ----------
17-03-17 18:13:08.438 -07 000000610 INF: Cycle	10	Tile	8	Exposure Settings		A	392	G	188	T	188	C	392
17-03-17 18:13:08.448 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28744, sync = True, waitForSettling = True)
17-03-17 18:13:08.448 -07 000000610 INF: Z Motor: Moving to -0.131582 mm, started at -0.138408 mm, distance = 6.83 um
17-03-17 18:13:08.448 -07 000000610 INF: FPGA: Xmit ZDACW 28744\n [Z Motor]
17-03-17 18:13:08.448 -07 000000382 INF: FPGA: Recv ZDACW
17-03-17 18:13:08.458 -07 000000610 INF: FPGA: 'ZDACW 28744' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:13:08.458 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:13:08.458 -07 000000541 INF: FPGA: Recv ZDACR 28744
17-03-17 18:13:08.468 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:08.468 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:13:08.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:13:08.618 -07 000000382 INF: FPGA: Recv ZSGSRD 29773
17-03-17 18:13:08.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:13:08.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:13:08.628 -07 000000480 INF: FPGA: Recv ZSGSRD 29776
17-03-17 18:13:08.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:08.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:13:08.638 -07 000000415 INF: FPGA: Recv ZSGSRD 29769
17-03-17 18:13:08.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:08.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:13:08.648 -07 000000480 INF: FPGA: Recv ZSGSRD 29770
17-03-17 18:13:08.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:08.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:13:08.658 -07 000000459 INF: FPGA: Recv ZSGSRD 29774
17-03-17 18:13:08.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:08.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:13:08.668 -07 000000480 INF: FPGA: Recv ZSGSRD 29775
17-03-17 18:13:08.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:08.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:13:08.678 -07 000000459 INF: FPGA: Recv ZSGSRD 29770
17-03-17 18:13:08.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:08.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:13:08.688 -07 000000480 INF: FPGA: Recv ZSGSRD 29773
17-03-17 18:13:08.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:08.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:13:08.698 -07 000000415 INF: FPGA: Recv ZSGSRD 29772
17-03-17 18:13:08.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:08.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:13:08.708 -07 000000480 INF: FPGA: Recv ZSGSRD 29775
17-03-17 18:13:08.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:08.718 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:13:08.718 -07 000000415 INF: FPGA: Recv ZPIEZORD 25303
17-03-17 18:13:08.728 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:08.728 -07 000000610 INF: Z Motor: Piezo is near 34.1 V (nominally 0 to 100 V), expect near 43.9 V, since DAC is at 4.386 V. Piezo Error = -9.8 V.
17-03-17 18:13:08.728 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.6 um, Read 10 ADC samples: Avg = 29773 (-130.8 uncal um), Error = 0.8 uncal um, Median = 29773 (-130.8 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 29769 (-130.8 uncal um), Max = 29776 (-130.8 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 18:13:08.728 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29773, posNoise = 3, negNoise = 4
17-03-17 18:13:08.728 -07 000000610 INF: Z Motor: After move to -0.131582, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:13:08.728 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 18:13:08.728 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:13:08.728 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:13:08.728 -07 000000541 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:13:08.728 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:13:08.728 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:13:08.728 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:13:08.728 -07 000000551 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:13:08.728 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:13:08.728 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 18:13:08.728 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:13:08.728 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 18:13:08.728 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:13:08.738 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 18:13:08.738 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:13:08.738 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 18:13:08.738 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:13:08.748 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 18:13:08.748 -07 000000541 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 18:13:08.748 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 18:13:08.748 -07 000000551 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 18:13:08.748 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 392 392 188 188 28921 150\n [Camera]
17-03-17 18:13:08.818 -07 000000480 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 10, FrontChillerTemperature: 3.960826,
17-03-17 18:13:08.948 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:13:09.338 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 584
17-03-17 18:13:09.338 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 584
17-03-17 18:13:09.338 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:13:09.338 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:13:09.338 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 2508048144, 0x0, 391868352) start.
17-03-17 18:13:09.338 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 584
17-03-17 18:13:09.338 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 584
17-03-17 18:13:09.338 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:13:09.338 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:13:09.338 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 1056706608, 0x0, 418435064) start.
17-03-17 18:13:09.528 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28921 777
17-03-17 18:13:09.678 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning grn on 927
17-03-17 18:13:09.738 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 2508048144, 0x0, 391868352) end. Duration was 402 ms.
17-03-17 18:13:09.738 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-17 18:13:09.738 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:13:09.748 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 1056706608, 0x0, 418435064) end. Duration was 400 ms.
17-03-17 18:13:09.748 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-17 18:13:09.748 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:13:09.748 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:13:09.748 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-17 18:13:09.748 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:13:09.758 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-17 18:13:09.868 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1115
17-03-17 18:13:09.868 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1115
17-03-17 18:13:09.868 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:13:09.868 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:13:09.868 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 1092128872, 0x0, 391868352) start.
17-03-17 18:13:09.868 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1115
17-03-17 18:13:09.868 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1115
17-03-17 18:13:09.868 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:13:09.868 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:13:09.868 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 1144426200, 0x0, 418435064) start.
17-03-17 18:13:10.058 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP 1307
17-03-17 18:13:10.058 -07 000000541 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:13:10.058 -07 000000610 INF: FPGA: 'CAMDBLSNAP 392 392 188 188 28921 150' command took 2 ms to send, 1307 ms to get response, and 1314 ms overall
17-03-17 18:13:10.058 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 18:13:10.058 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 9 at Y-position 65.71484375, Z-Position -0.131591420107784. ------
17-03-17 18:13:10.068 -07 000000618 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:13:10.068 -07 000000480 INF: Y Motor: MoveYZ optimized starting. Moving Y to 66.5526 mm, moving Z to -0.13796 mm
17-03-17 18:13:10.068 -07 000000480 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:13:10.068 -07 000000512 INF: Y Motor: Entering MoveAbsStepped (target = 106484 steps, sync = True, waitForSettling = True)
17-03-17 18:13:10.068 -07 000000512 INF: Y Motor: Moving to 66.5526 mm, started at 65.7148 mm, delta = 0.8378 mm
17-03-17 18:13:10.068 -07 000000415 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:13:10.068 -07 000000541 INF: Z Motor: Entering MoveAbsStepped (DAC = 30137, sync = True, waitForSettling = False)
17-03-17 18:13:10.068 -07 000000541 INF: Z Motor: Moving to -0.137958 mm, started at -0.131591 mm, distance = -6.37 um
17-03-17 18:13:10.078 -07 000000618 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 18:13:10.078 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:13:10.078 -07 000000012 INF: FPGA: Recv YRDPOS 134585
17-03-17 18:13:10.088 -07 000000541 INF: FPGA: Xmit ZDACW 30137\n [Z Motor]
17-03-17 18:13:10.088 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-17 18:13:10.088 -07 000000512 INF: Y Motor: Encoder = 134585 = motor step 105144.5 = 65.7153 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:13:10.088 -07 000000502 INF: FPGA: Recv ZDACW
17-03-17 18:13:10.088 -07 000000512 INF: Y Motor: Last commanded position = 65.7226 mm (105156.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:13:10.088 -07 000000512 INF: Y Motor: Moving 1340 steps-16
17-03-17 18:13:10.098 -07 000000618 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:13:10.098 -07 000000541 INF: FPGA: 'ZDACW 30137' command took 0 ms to send, 0 ms to get response, and 21 ms overall
17-03-17 18:13:10.108 -07 000000512 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:13:10.118 -07 000000541 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:13:10.118 -07 000000415 INF: FPGA: Recv ZDACR 30137
17-03-17 18:13:10.128 -07 000000541 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:13:10.128 -07 000000541 INF: Z Motor: MoveAbsStepped took 51 ms (did NOT wait for settling yet))
17-03-17 18:13:10.278 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 1144426200, 0x0, 418435064) end. Duration was 401 ms.
17-03-17 18:13:10.278 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-17 18:13:10.278 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:13:10.278 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 1092128872, 0x0, 391868352) end. Duration was 404 ms.
17-03-17 18:13:10.278 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-17 18:13:10.278 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:13:10.278 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:13:10.288 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-17 18:13:10.288 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 414 ms.
17-03-17 18:13:10.288 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-17 18:13:10.298 -07 000000627 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:13:10.298 -07 000000618 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 18:13:10.478 -07 000000382 INF: FPGA: Recv YMVTILE
17-03-17 18:13:10.478 -07 000000512 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 393 ms overall
17-03-17 18:13:10.508 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:13:10.518 -07 000000541 INF: FPGA: Recv YRDPOS 136273
17-03-17 18:13:10.518 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 18:13:10.518 -07 000000512 INF: Y Motor: Encoder = 136273 = motor step 106463.3 = 66.5396 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:13:10.518 -07 000000512 INF: Y Motor: Position error before settling (table move) = -27 encoder counts (-0.013 mm)
17-03-17 18:13:10.518 -07 000000512 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 393 ms, distance = 0.838 mm, average velocity = 2.132 mm/sec
17-03-17 18:13:11.468 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:13:11.468 -07 000000382 INF: FPGA: Recv YRDPOS 136274
17-03-17 18:13:11.478 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:13:11.478 -07 000000512 INF: Y Motor: Encoder = 136274 = motor step 106464.1 = 66.5400 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:13:11.498 -07 000000512 INF: Y Motor: After move to 66.552605, error = -0.012566, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:13:11.498 -07 000000512 INF: Y Motor: Position error after settling (table move) = -26 encoder counts (-0.013 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 18:13:11.498 -07 000000512 INF: Y Motor: Moved to 66.5400 after 1423 ms (table move)
17-03-17 18:13:11.498 -07 000000480 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137958 mm (DAC = 30137)
17-03-17 18:13:11.498 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:13:11.498 -07 000000415 INF: FPGA: Recv ZSGSRD 30765
17-03-17 18:13:11.508 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 18:13:11.508 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:13:11.508 -07 000000415 INF: FPGA: Recv ZSGSRD 30757
17-03-17 18:13:11.518 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:11.518 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:13:11.518 -07 000000012 INF: FPGA: Recv ZSGSRD 30764
17-03-17 18:13:11.528 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:11.528 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:13:11.528 -07 000000012 INF: FPGA: Recv ZSGSRD 30764
17-03-17 18:13:11.538 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:11.538 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:13:11.538 -07 000000415 INF: FPGA: Recv ZSGSRD 30771
17-03-17 18:13:11.548 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:11.548 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:13:11.548 -07 000000012 INF: FPGA: Recv ZSGSRD 30772
17-03-17 18:13:11.558 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:11.558 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:13:11.558 -07 000000012 INF: FPGA: Recv ZSGSRD 30769
17-03-17 18:13:11.568 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:11.568 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:13:11.568 -07 000000012 INF: FPGA: Recv ZSGSRD 30767
17-03-17 18:13:11.568 -07 000000541 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:13:11.568 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 9. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=90, R2=99, Total=189. Warn if over 250 bubbles per interval.
17-03-17 18:13:11.578 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:11.578 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:13:11.578 -07 000000541 INF: FPGA: Recv ZSGSRD 30757
17-03-17 18:13:11.588 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:11.588 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:13:11.588 -07 000000541 INF: FPGA: Recv ZSGSRD 30767
17-03-17 18:13:11.598 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:11.598 -07 000000480 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:13:11.598 -07 000000551 INF: FPGA: Recv ZPIEZORD 26620
17-03-17 18:13:11.608 -07 000000480 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:11.608 -07 000000480 INF: Z Motor: Piezo is near 36.9 V (nominally 0 to 100 V), expect near 46.0 V, since DAC is at 4.599 V. Piezo Error = -9.1 V.
17-03-17 18:13:11.608 -07 000000480 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.0 um, Read 10 ADC samples: Avg = 30765 (-137.2 uncal um), Error = 0.8 uncal um, Median = 30766 (-137.2 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 30757 (-137.1 uncal um), Max = 30772 (-137.2 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 18:13:11.608 -07 000000480 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30765, posNoise = 7, negNoise = 8
17-03-17 18:13:11.608 -07 000000480 INF: Z Motor: After move to -0.137958, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:13:11.608 -07 000000480 INF: Z Motor: Settle wait time = 1425 ms, measure time = 107 ms (allowed 150 ms), total time = 1532 ms
17-03-17 18:13:11.608 -07 000000480 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-17 18:13:11.658 -07 000000480 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1585 ms
17-03-17 18:13:11.658 -07 000000480 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:13:11.658 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:13:11.658 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:13:11.658 -07 000000459 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:13:11.658 -07 000000541 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:13:11.658 -07 000000627 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:13:11.658 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:13:11.658 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:13:11.658 -07 000000627 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:13:11.668 -07 000000627 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:13:11.668 -07 000000627 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:13:11.678 -07 000000627 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-17 18:13:11.678 -07 000000627 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-17 18:13:11.678 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:13:11.728 -07 000000502 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:13:11.928 -07 000000541 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:13:11.928 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:13:11.928 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:13:11.928 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1179848464, 0x0, 559484976) start.
17-03-17 18:13:11.958 -07 000000541 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:13:11.958 -07 000000480 INF: FPGA: Recv CAMSNAP
17-03-17 18:13:11.968 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 279 ms to get response, and 285 ms overall
17-03-17 18:13:12.048 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1179848464, 0x0, 559484976) end. Duration was 128 ms.
17-03-17 18:13:12.048 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:13:12.058 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-17 18:13:12.058 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 130 ms.
17-03-17 18:13:12.068 -07 000000459 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:13:12.068 -07 000000415 INF: Autofocus start
17-03-17 18:13:12.068 -07 000000415 INF: MeasureProfile start
17-03-17 18:13:12.068 -07 000000551 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:13:12.078 -07 000000459 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:13:12.078 -07 000000459 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:13:12.078 -07 000000415 INF: MeasureProfile done
17-03-17 18:13:12.078 -07 000000415 INF: X=-16  Z correction [um]=-0.08128808
17-03-17 18:13:12.078 -07 000000415 INF: Autofocus finished
17-03-17 18:13:12.278 -07 000000551 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:13:12.278 -07 000000459 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 191 ms to get response, and 202 ms overall
17-03-17 18:13:12.278 -07 000000610 INF: ------------ Scan Snapping tile 9 at Y-position 66.5400390625, Z-position -0.137964238552411. ----------
17-03-17 18:13:12.278 -07 000000610 INF: Cycle	10	Tile	9	Exposure Settings		A	392	G	188	T	188	C	392
17-03-17 18:13:12.288 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28631, sync = True, waitForSettling = True)
17-03-17 18:13:12.288 -07 000000610 INF: Z Motor: Moving to -0.131064 mm, started at -0.137964 mm, distance = 6.90 um
17-03-17 18:13:12.288 -07 000000610 INF: FPGA: Xmit ZDACW 28631\n [Z Motor]
17-03-17 18:13:12.288 -07 000000541 INF: FPGA: Recv ZDACW
17-03-17 18:13:12.298 -07 000000610 INF: FPGA: 'ZDACW 28631' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:12.298 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:13:12.298 -07 000000541 INF: FPGA: Recv ZDACR 28631
17-03-17 18:13:12.308 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:12.308 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:13:12.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:13:12.458 -07 000000541 INF: FPGA: Recv ZSGSRD 29694
17-03-17 18:13:12.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:13:12.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:13:12.468 -07 000000382 INF: FPGA: Recv ZSGSRD 29693
17-03-17 18:13:12.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:12.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:13:12.478 -07 000000618 INF: FPGA: Recv ZSGSRD 29695
17-03-17 18:13:12.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:12.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:13:12.488 -07 000000012 INF: FPGA: Recv ZSGSRD 29685
17-03-17 18:13:12.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:12.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:13:12.498 -07 000000012 INF: FPGA: Recv ZSGSRD 29696
17-03-17 18:13:12.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:12.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:13:12.508 -07 000000012 INF: FPGA: Recv ZSGSRD 29694
17-03-17 18:13:12.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:12.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:13:12.518 -07 000000459 INF: FPGA: Recv ZSGSRD 29685
17-03-17 18:13:12.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:12.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:13:12.528 -07 000000459 INF: FPGA: Recv ZSGSRD 29695
17-03-17 18:13:12.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:12.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:13:12.538 -07 000000012 INF: FPGA: Recv ZSGSRD 29694
17-03-17 18:13:12.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:12.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:13:12.548 -07 000000502 INF: FPGA: Recv ZSGSRD 29702
17-03-17 18:13:12.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:13:12.558 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:13:12.558 -07 000000502 INF: FPGA: Recv ZPIEZORD 25231
17-03-17 18:13:12.568 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:12.568 -07 000000610 INF: Z Motor: Piezo is near 33.9 V (nominally 0 to 100 V), expect near 43.7 V, since DAC is at 4.369 V. Piezo Error = -9.8 V.
17-03-17 18:13:12.568 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.1 um, Read 10 ADC samples: Avg = 29693 (-130.3 uncal um), Error = 0.8 uncal um, Median = 29694 (-130.3 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 29685 (-130.2 uncal um), Max = 29702 (-130.4 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 18:13:12.568 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29693, posNoise = 9, negNoise = 8
17-03-17 18:13:12.568 -07 000000610 INF: Z Motor: After move to -0.131064, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:13:12.568 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 18:13:12.568 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:13:12.568 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:13:12.568 -07 000000012 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:13:12.568 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:13:12.568 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:13:12.568 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:13:12.568 -07 000000415 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:13:12.568 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:13:12.568 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:13:12.568 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:13:12.568 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:13:12.568 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:13:12.568 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 18:13:12.578 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:13:12.578 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 18:13:12.578 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:13:12.588 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 18:13:12.588 -07 000000415 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 19 ms.
17-03-17 18:13:12.588 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 18:13:12.588 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 18:13:12.588 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 392 392 188 188 28808 150\n [Camera]
17-03-17 18:13:12.788 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:13:13.188 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 584
17-03-17 18:13:13.188 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 584
17-03-17 18:13:13.188 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:13:13.188 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:13:13.188 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 1393576040, 0x0, 391868352) start.
17-03-17 18:13:13.188 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 584
17-03-17 18:13:13.188 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 584
17-03-17 18:13:13.188 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:13:13.308 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:13:13.308 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-17 18:13:13.378 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28808 777
17-03-17 18:13:13.528 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP turning grn on 927
17-03-17 18:13:13.588 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 1393576040, 0x0, 391868352) end. Duration was 398 ms.
17-03-17 18:13:13.588 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-17 18:13:13.588 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:13:13.588 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:13:13.588 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-17 18:13:13.698 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 392 ms.
17-03-17 18:13:13.698 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-17 18:13:13.698 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:13:13.708 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-17 18:13:13.708 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 518 ms.
17-03-17 18:13:13.718 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1115
17-03-17 18:13:13.718 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1115
17-03-17 18:13:13.718 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:13:13.718 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1115
17-03-17 18:13:13.718 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1115
17-03-17 18:13:13.718 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:13:13.728 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:13:13.728 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 2468220576, 0x0, 391868352) start.
17-03-17 18:13:13.728 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:13:13.728 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 2503642840, 0x0, 418435064) start.
17-03-17 18:13:13.908 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP 1308
17-03-17 18:13:13.908 -07 000000415 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:13:13.908 -07 000000610 INF: FPGA: 'CAMDBLSNAP 392 392 188 188 28808 150' command took 2 ms to send, 1304 ms to get response, and 1315 ms overall
17-03-17 18:13:13.908 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 18:13:13.908 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 10 at Y-position 66.5400390625, Z-Position -0.131077483136443. ------
17-03-17 18:13:13.908 -07 000000618 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:13:13.908 -07 000000512 INF: Y Motor: MoveYZ optimized starting. Moving Y to 67.3826 mm, moving Z to -0.13782 mm
17-03-17 18:13:13.908 -07 000000512 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:13:13.918 -07 000000382 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:13:13.918 -07 000000618 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 3 ms to get response, and 4 ms overall
17-03-17 18:13:13.918 -07 000000618 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:13:13.918 -07 000000551 INF: Y Motor: Entering MoveAbsStepped (target = 107812 steps, sync = True, waitForSettling = True)
17-03-17 18:13:13.918 -07 000000551 INF: Y Motor: Moving to 67.3826 mm, started at 66.5400 mm, delta = 0.8426 mm
17-03-17 18:13:13.918 -07 000000502 INF: Z Motor: Entering MoveAbsStepped (DAC = 30107, sync = True, waitForSettling = False)
17-03-17 18:13:13.918 -07 000000502 INF: Z Motor: Moving to -0.137821 mm, started at -0.131077 mm, distance = -6.74 um
17-03-17 18:13:13.928 -07 000000551 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:13:13.928 -07 000000382 INF: FPGA: Recv YRDPOS 136274
17-03-17 18:13:13.938 -07 000000502 INF: FPGA: Xmit ZDACW 30107\n [Z Motor]
17-03-17 18:13:13.938 -07 000000551 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-17 18:13:13.938 -07 000000551 INF: Y Motor: Encoder = 136274 = motor step 106464.1 = 66.5400 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:13:13.938 -07 000000551 INF: Y Motor: Last commanded position = 66.5526 mm (106484.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:13:13.938 -07 000000551 INF: Y Motor: Moving 1348 steps-27
17-03-17 18:13:13.938 -07 000000486 INF: FPGA: Recv ZDACW
17-03-17 18:13:13.948 -07 000000502 INF: FPGA: 'ZDACW 30107' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-17 18:13:13.948 -07 000000502 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:13:13.948 -07 000000593 INF: FPGA: Recv ZDACR 30107
17-03-17 18:13:13.958 -07 000000551 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:13:13.958 -07 000000502 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:13:13.958 -07 000000502 INF: Z Motor: MoveAbsStepped took 35 ms (did NOT wait for settling yet))
17-03-17 18:13:14.118 -07 000000501 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:13:14.118 -07 000000618 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 196 ms to get response, and 202 ms overall
17-03-17 18:13:14.128 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 2468220576, 0x0, 391868352) end. Duration was 396 ms.
17-03-17 18:13:14.128 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 2503642840, 0x0, 418435064) end. Duration was 396 ms.
17-03-17 18:13:14.128 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 18:13:14.128 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:13:14.128 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 18:13:14.128 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:13:14.128 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 18:13:14.128 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 416 ms.
17-03-17 18:13:14.138 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 18:13:14.138 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 421 ms.
17-03-17 18:13:14.178 -07 000000618 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 10, FrontChillerTemperature: 3.970374,
17-03-17 18:13:14.328 -07 000000501 INF: FPGA: Recv YMVTILE
17-03-17 18:13:14.328 -07 000000551 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 18:13:14.368 -07 000000551 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:13:14.368 -07 000000502 INF: FPGA: Recv YRDPOS 137979
17-03-17 18:13:14.378 -07 000000551 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:14.378 -07 000000551 INF: Y Motor: Encoder = 137979 = motor step 107796.1 = 67.3726 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:13:14.378 -07 000000551 INF: Y Motor: Position error before settling (table move) = -21 encoder counts (-0.010 mm)
17-03-17 18:13:14.378 -07 000000551 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.843 mm, average velocity = 2.117 mm/sec
17-03-17 18:13:15.328 -07 000000551 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:13:15.328 -07 000000501 INF: FPGA: Recv YRDPOS 137979
17-03-17 18:13:15.338 -07 000000551 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:13:15.338 -07 000000551 INF: Y Motor: Encoder = 137979 = motor step 107796.1 = 67.3726 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:13:15.358 -07 000000551 INF: Y Motor: After move to 67.382607, error = -0.010048, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:13:15.358 -07 000000551 INF: Y Motor: Position error after settling (table move) = -21 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:13:15.358 -07 000000551 INF: Y Motor: Moved to 67.3726 after 1435 ms (table move)
17-03-17 18:13:15.358 -07 000000512 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137821 mm (DAC = 30107)
17-03-17 18:13:15.358 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:13:15.358 -07 000000618 INF: FPGA: Recv ZSGSRD 30744
17-03-17 18:13:15.368 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 18:13:15.368 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:13:15.368 -07 000000502 INF: FPGA: Recv ZSGSRD 30742
17-03-17 18:13:15.378 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:15.378 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:13:15.378 -07 000000501 INF: FPGA: Recv ZSGSRD 30747
17-03-17 18:13:15.388 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:15.388 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:13:15.388 -07 000000480 INF: FPGA: Recv ZSGSRD 30738
17-03-17 18:13:15.398 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:15.398 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:13:15.398 -07 000000593 INF: FPGA: Recv ZSGSRD 30743
17-03-17 18:13:15.408 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:15.408 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:13:15.408 -07 000000480 INF: FPGA: Recv ZSGSRD 30752
17-03-17 18:13:15.418 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:15.418 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:13:15.418 -07 000000593 INF: FPGA: Recv ZSGSRD 30743
17-03-17 18:13:15.428 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:15.428 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:13:15.428 -07 000000618 INF: FPGA: Recv ZSGSRD 30733
17-03-17 18:13:15.438 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:15.438 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:13:15.438 -07 000000502 INF: FPGA: Recv ZSGSRD 30738
17-03-17 18:13:15.448 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:15.448 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:13:15.448 -07 000000501 INF: FPGA: Recv ZSGSRD 30742
17-03-17 18:13:15.458 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:15.458 -07 000000512 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:13:15.458 -07 000000502 INF: FPGA: Recv ZPIEZORD 26645
17-03-17 18:13:15.468 -07 000000512 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:15.468 -07 000000512 INF: Z Motor: Piezo is near 36.9 V (nominally 0 to 100 V), expect near 45.9 V, since DAC is at 4.594 V. Piezo Error = -9.0 V.
17-03-17 18:13:15.468 -07 000000512 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.8 um, Read 10 ADC samples: Avg = 30742 (-137.0 uncal um), Error = 0.8 uncal um, Median = 30742 (-137.0 uncal um), StdDev = 5 (0.0 uncal um), Range = 19 (0.1 uncal um), Min = 30733 (-137.0 uncal um), Max = 30752 (-137.1 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 18:13:15.468 -07 000000512 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30742, posNoise = 10, negNoise = 9
17-03-17 18:13:15.468 -07 000000512 INF: Z Motor: After move to -0.137821, error = 0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:13:15.468 -07 000000512 INF: Z Motor: Settle wait time = 1438 ms, measure time = 107 ms (allowed 150 ms), total time = 1545 ms
17-03-17 18:13:15.468 -07 000000512 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-17 18:13:15.518 -07 000000512 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1600 ms
17-03-17 18:13:15.518 -07 000000512 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:13:15.518 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:13:15.518 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:13:15.518 -07 000000593 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:13:15.518 -07 000000551 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:13:15.518 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:13:15.518 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:13:15.518 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:13:15.518 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:13:15.528 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:13:15.528 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:13:15.538 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 15 ms.
17-03-17 18:13:15.538 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 19 ms.
17-03-17 18:13:15.538 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:13:15.588 -07 000000502 INF: FPGA: Recv @CAMSNAP turning led on 42
17-03-17 18:13:15.788 -07 000000551 INF: FPGA: Recv @CAMSNAP img rdy 242
17-03-17 18:13:15.788 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 242
17-03-17 18:13:15.788 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:13:15.788 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 639799168, 0x0, 559484976) start.
17-03-17 18:13:15.828 -07 000000480 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:13:15.828 -07 000000512 INF: FPGA: Recv CAMSNAP
17-03-17 18:13:15.828 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 274 ms to get response, and 285 ms overall
17-03-17 18:13:15.918 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 639799168, 0x0, 559484976) end. Duration was 124 ms.
17-03-17 18:13:15.918 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:13:15.918 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 18:13:15.918 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 126 ms.
17-03-17 18:13:15.928 -07 000000551 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:13:15.928 -07 000000480 INF: Autofocus start
17-03-17 18:13:15.928 -07 000000480 INF: MeasureProfile start
17-03-17 18:13:16.038 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:13:16.038 -07 000000551 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 111 ms overall
17-03-17 18:13:16.038 -07 000000551 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:13:16.048 -07 000000480 INF: MeasureProfile done
17-03-17 18:13:16.048 -07 000000480 INF: X=25  Z correction [um]=0.0963114
17-03-17 18:13:16.048 -07 000000480 INF: Autofocus finished
17-03-17 18:13:16.238 -07 000000459 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:13:16.238 -07 000000551 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 199 ms to get response, and 202 ms overall
17-03-17 18:13:16.248 -07 000000610 INF: ------------ Scan Snapping tile 10 at Y-position 67.37255859375, Z-position -0.13781648167315. ----------
17-03-17 18:13:16.248 -07 000000610 INF: Cycle	10	Tile	10	Exposure Settings		A	392	G	188	T	188	C	392
17-03-17 18:13:16.248 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28641, sync = True, waitForSettling = True)
17-03-17 18:13:16.248 -07 000000610 INF: Z Motor: Moving to -0.131110 mm, started at -0.137816 mm, distance = 6.71 um
17-03-17 18:13:16.248 -07 000000610 INF: FPGA: Xmit ZDACW 28641\n [Z Motor]
17-03-17 18:13:16.258 -07 000000480 INF: FPGA: Recv ZDACW
17-03-17 18:13:16.258 -07 000000610 INF: FPGA: 'ZDACW 28641' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 18:13:16.258 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:13:16.258 -07 000000618 INF: FPGA: Recv ZDACR 28641
17-03-17 18:13:16.268 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:16.268 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:13:16.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:13:16.418 -07 000000502 INF: FPGA: Recv ZSGSRD 29705
17-03-17 18:13:16.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:16.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:13:16.428 -07 000000551 INF: FPGA: Recv ZSGSRD 29694
17-03-17 18:13:16.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:13:16.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:13:16.438 -07 000000480 INF: FPGA: Recv ZSGSRD 29697
17-03-17 18:13:16.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:16.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:13:16.448 -07 000000501 INF: FPGA: Recv ZSGSRD 29696
17-03-17 18:13:16.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:16.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:13:16.458 -07 000000512 INF: FPGA: Recv ZSGSRD 29701
17-03-17 18:13:16.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:16.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:13:16.468 -07 000000502 INF: FPGA: Recv ZSGSRD 29708
17-03-17 18:13:16.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:16.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:13:16.478 -07 000000551 INF: FPGA: Recv ZSGSRD 29698
17-03-17 18:13:16.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:16.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:13:16.488 -07 000000501 INF: FPGA: Recv ZSGSRD 29694
17-03-17 18:13:16.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:16.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:13:16.498 -07 000000593 INF: FPGA: Recv ZSGSRD 29698
17-03-17 18:13:16.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:16.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:13:16.508 -07 000000501 INF: FPGA: Recv ZSGSRD 29694
17-03-17 18:13:16.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:16.518 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:13:16.518 -07 000000551 INF: FPGA: Recv ZPIEZORD 25276
17-03-17 18:13:16.528 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:16.528 -07 000000610 INF: Z Motor: Piezo is near 34.0 V (nominally 0 to 100 V), expect near 43.7 V, since DAC is at 4.370 V. Piezo Error = -9.7 V.
17-03-17 18:13:16.528 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.1 um, Read 10 ADC samples: Avg = 29698 (-130.3 uncal um), Error = 0.8 uncal um, Median = 29698 (-130.3 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 29694 (-130.3 uncal um), Max = 29708 (-130.4 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 18:13:16.528 -07 000000610 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29698, posNoise = 10, negNoise = 4
17-03-17 18:13:16.528 -07 000000610 INF: Z Motor: After move to -0.131110, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:13:16.528 -07 000000610 INF: Z Motor: MoveAbsStepped took 273 ms)
17-03-17 18:13:16.528 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:13:16.528 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:13:16.528 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:13:16.528 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:13:16.528 -07 000000551 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:13:16.528 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:13:16.528 -07 000000593 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:13:16.528 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:13:16.528 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:13:16.528 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:13:16.528 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:13:16.528 -07 000000593 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:13:16.538 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 18:13:16.538 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:13:16.538 -07 000000593 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 18:13:16.538 -07 000000593 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:13:16.548 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms.
17-03-17 18:13:16.548 -07 000000551 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 18:13:16.548 -07 000000593 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 14 ms.
17-03-17 18:13:16.548 -07 000000593 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 18:13:16.548 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 392 392 188 188 28818 150\n [Camera]
17-03-17 18:13:16.568 -07 000000480 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:13:16.568 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 9. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=90, R2=99, Total=189. Warn if over 250 bubbles per interval.
17-03-17 18:13:16.748 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:13:17.138 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 584
17-03-17 18:13:17.138 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 584
17-03-17 18:13:17.148 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:13:17.148 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 584
17-03-17 18:13:17.148 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 584
17-03-17 18:13:17.148 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:13:17.148 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:13:17.148 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 18:13:17.148 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:13:17.148 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-17 18:13:17.338 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28818 777
17-03-17 18:13:17.488 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP turning grn on 927
17-03-17 18:13:17.538 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 392 ms.
17-03-17 18:13:17.538 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-17 18:13:17.538 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:13:17.538 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 395 ms.
17-03-17 18:13:17.548 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 18:13:17.548 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:13:17.548 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:13:17.548 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 18:13:17.548 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-17 18:13:17.548 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 405 ms.
17-03-17 18:13:17.678 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1115
17-03-17 18:13:17.678 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1115
17-03-17 18:13:17.678 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1115
17-03-17 18:13:17.678 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1115
17-03-17 18:13:17.678 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:13:17.678 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:13:17.678 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 2468220576, 0x0, 391868352) start.
17-03-17 18:13:17.678 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:13:17.678 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:13:17.678 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 2503642840, 0x0, 418435064) start.
17-03-17 18:13:17.868 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP 1307
17-03-17 18:13:17.868 -07 000000512 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:13:17.868 -07 000000610 INF: FPGA: 'CAMDBLSNAP 392 392 188 188 28818 150' command took 2 ms to send, 1302 ms to get response, and 1314 ms overall
17-03-17 18:13:17.868 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 18:13:17.868 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 11 at Y-position 67.37255859375, Z-Position -0.131109604197152. ------
17-03-17 18:13:17.868 -07 000000480 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:13:17.868 -07 000000551 INF: Y Motor: MoveYZ optimized starting. Moving Y to 68.2126 mm, moving Z to -0.13707 mm
17-03-17 18:13:17.868 -07 000000551 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:13:17.878 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:13:17.878 -07 000000480 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 18:13:17.878 -07 000000512 INF: Z Motor: Entering MoveAbsStepped (DAC = 29942, sync = True, waitForSettling = False)
17-03-17 18:13:17.878 -07 000000512 INF: Z Motor: Moving to -0.137066 mm, started at -0.131110 mm, distance = -5.96 um
17-03-17 18:13:17.878 -07 000000480 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:13:17.878 -07 000000502 INF: Y Motor: Entering MoveAbsStepped (target = 109140 steps, sync = True, waitForSettling = True)
17-03-17 18:13:17.878 -07 000000502 INF: Y Motor: Moving to 68.2126 mm, started at 67.3726 mm, delta = 0.8400 mm
17-03-17 18:13:17.888 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:13:17.888 -07 000000415 INF: FPGA: Recv YRDPOS 137980
17-03-17 18:13:17.898 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-17 18:13:17.898 -07 000000502 INF: Y Motor: Encoder = 137980 = motor step 107796.9 = 67.3730 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:13:17.898 -07 000000512 INF: FPGA: Xmit ZDACW 29942\n [Z Motor]
17-03-17 18:13:17.898 -07 000000501 INF: FPGA: Recv ZDACW
17-03-17 18:13:17.898 -07 000000502 INF: Y Motor: Last commanded position = 67.3826 mm (107812.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:13:17.898 -07 000000502 INF: Y Motor: Moving 1343 steps-21
17-03-17 18:13:17.908 -07 000000512 INF: FPGA: 'ZDACW 29942' command took 3 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:13:17.908 -07 000000512 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:13:17.908 -07 000000618 INF: FPGA: Recv ZDACR 29942
17-03-17 18:13:17.918 -07 000000502 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:13:17.918 -07 000000512 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:17.918 -07 000000512 INF: Z Motor: MoveAbsStepped took 39 ms (did NOT wait for settling yet))
17-03-17 18:13:18.058 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 2503642840, 0x0, 418435064) end. Duration was 381 ms.
17-03-17 18:13:18.058 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 381 ms.
17-03-17 18:13:18.058 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:13:18.058 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 2468220576, 0x0, 391868352) end. Duration was 385 ms.
17-03-17 18:13:18.058 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 18:13:18.068 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:13:18.068 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:13:18.068 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 18:13:18.068 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-17 18:13:18.068 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-17 18:13:18.078 -07 000000415 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:13:18.078 -07 000000480 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:13:18.288 -07 000000382 INF: FPGA: Recv YMVTILE
17-03-17 18:13:18.288 -07 000000502 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 391 ms overall
17-03-17 18:13:18.328 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:13:18.328 -07 000000627 INF: FPGA: Recv YRDPOS 139685
17-03-17 18:13:18.338 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:13:18.338 -07 000000502 INF: Y Motor: Encoder = 139685 = motor step 109128.9 = 68.2056 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:13:18.338 -07 000000502 INF: Y Motor: Position error before settling (table move) = -14 encoder counts (-0.007 mm)
17-03-17 18:13:18.338 -07 000000502 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 392 ms, distance = 0.840 mm, average velocity = 2.143 mm/sec
17-03-17 18:13:19.288 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:13:19.288 -07 000000593 INF: FPGA: Recv YRDPOS 139685
17-03-17 18:13:19.298 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:13:19.298 -07 000000502 INF: Y Motor: Encoder = 139685 = motor step 109128.9 = 68.2056 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:13:19.308 -07 000000502 INF: Y Motor: After move to 68.212608, error = -0.007042, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:13:19.308 -07 000000502 INF: Y Motor: Position error after settling (table move) = -14 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:13:19.308 -07 000000502 INF: Y Motor: Moved to 68.2056 after 1437 ms (table move)
17-03-17 18:13:19.318 -07 000000551 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137066 mm (DAC = 29942)
17-03-17 18:13:19.318 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:13:19.318 -07 000000512 INF: FPGA: Recv ZSGSRD 30636
17-03-17 18:13:19.328 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:13:19.328 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:13:19.328 -07 000000512 INF: FPGA: Recv ZSGSRD 30628
17-03-17 18:13:19.338 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:19.338 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:13:19.338 -07 000000512 INF: FPGA: Recv ZSGSRD 30628
17-03-17 18:13:19.348 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:19.348 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:13:19.348 -07 000000512 INF: FPGA: Recv ZSGSRD 30634
17-03-17 18:13:19.358 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:19.358 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:13:19.358 -07 000000512 INF: FPGA: Recv ZSGSRD 30636
17-03-17 18:13:19.368 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:19.368 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:13:19.368 -07 000000593 INF: FPGA: Recv ZSGSRD 30623
17-03-17 18:13:19.378 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:19.378 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:13:19.378 -07 000000502 INF: FPGA: Recv ZSGSRD 30628
17-03-17 18:13:19.388 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:19.388 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:13:19.388 -07 000000502 INF: FPGA: Recv ZSGSRD 30629
17-03-17 18:13:19.398 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:19.398 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:13:19.398 -07 000000502 INF: FPGA: Recv ZSGSRD 30628
17-03-17 18:13:19.408 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:19.408 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:13:19.408 -07 000000502 INF: FPGA: Recv ZSGSRD 30623
17-03-17 18:13:19.418 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:19.418 -07 000000551 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:13:19.418 -07 000000502 INF: FPGA: Recv ZPIEZORD 26468
17-03-17 18:13:19.428 -07 000000551 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:19.428 -07 000000551 INF: Z Motor: Piezo is near 36.5 V (nominally 0 to 100 V), expect near 45.7 V, since DAC is at 4.569 V. Piezo Error = -9.1 V.
17-03-17 18:13:19.428 -07 000000551 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.1 um, Read 10 ADC samples: Avg = 30629 (-136.3 uncal um), Error = 0.8 uncal um, Median = 30628 (-136.3 uncal um), StdDev = 5 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 30623 (-136.3 uncal um), Max = 30636 (-136.3 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 18:13:19.428 -07 000000551 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30629, posNoise = 7, negNoise = 6
17-03-17 18:13:19.428 -07 000000551 INF: Z Motor: After move to -0.137066, error = -0.000025, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:13:19.428 -07 000000551 INF: Z Motor: Settle wait time = 1442 ms, measure time = 107 ms (allowed 150 ms), total time = 1549 ms
17-03-17 18:13:19.428 -07 000000551 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-17 18:13:19.478 -07 000000551 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1602 ms
17-03-17 18:13:19.478 -07 000000551 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:13:19.478 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:13:19.478 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:13:19.478 -07 000000382 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:13:19.478 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:13:19.478 -07 000000480 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:13:19.478 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 18:13:19.478 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:13:19.488 -07 000000382 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:13:19.488 -07 000000382 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms.
17-03-17 18:13:19.488 -07 000000382 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:13:19.498 -07 000000382 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 18:13:19.498 -07 000000382 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 13 ms.
17-03-17 18:13:19.498 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:13:19.538 -07 000000593 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 10, FrontChillerTemperature: 3.999021,
17-03-17 18:13:19.538 -07 000000618 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:13:19.738 -07 000000415 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:13:19.738 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:13:19.748 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:13:19.848 -07 000000593 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:13:19.848 -07 000000593 INF: FPGA: Recv CAMSNAP
17-03-17 18:13:19.848 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 349 ms to get response, and 355 ms overall
17-03-17 18:13:19.858 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 613074248, 0x0, 559484976) start.
17-03-17 18:13:19.968 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 613074248, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 18:13:19.968 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:13:19.968 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 18:13:19.968 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 226 ms.
17-03-17 18:13:20.058 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:13:20.058 -07 000000551 INF: Autofocus start
17-03-17 18:13:20.058 -07 000000551 INF: MeasureProfile start
17-03-17 18:13:20.058 -07 000000627 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:13:20.068 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:13:20.068 -07 000000502 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:13:20.068 -07 000000551 INF: MeasureProfile done
17-03-17 18:13:20.068 -07 000000551 INF: X=-16  Z correction [um]=-0.08128808
17-03-17 18:13:20.068 -07 000000551 INF: Autofocus finished
17-03-17 18:13:20.268 -07 000000627 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:13:20.268 -07 000000502 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 191 ms to get response, and 202 ms overall
17-03-17 18:13:20.268 -07 000000610 INF: ------------ Scan Snapping tile 11 at Y-position 68.20556640625, Z-position -0.137090545701131. ----------
17-03-17 18:13:20.268 -07 000000610 INF: Cycle	10	Tile	11	Exposure Settings		A	392	G	188	T	188	C	392
17-03-17 18:13:20.278 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28437, sync = True, waitForSettling = True)
17-03-17 18:13:20.278 -07 000000610 INF: Z Motor: Moving to -0.130176 mm, started at -0.137091 mm, distance = 6.91 um
17-03-17 18:13:20.278 -07 000000610 INF: FPGA: Xmit ZDACW 28437\n [Z Motor]
17-03-17 18:13:20.278 -07 000000459 INF: FPGA: Recv ZDACW
17-03-17 18:13:20.288 -07 000000610 INF: FPGA: 'ZDACW 28437' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:20.288 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:13:20.288 -07 000000551 INF: FPGA: Recv ZDACR 28437
17-03-17 18:13:20.298 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:20.298 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:13:20.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:13:20.448 -07 000000512 INF: FPGA: Recv ZSGSRD 29552
17-03-17 18:13:20.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:13:20.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:13:20.458 -07 000000627 INF: FPGA: Recv ZSGSRD 29560
17-03-17 18:13:20.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:20.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:13:20.468 -07 000000433 INF: FPGA: Recv ZSGSRD 29547
17-03-17 18:13:20.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:20.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:13:20.478 -07 000000627 INF: FPGA: Recv ZSGSRD 29551
17-03-17 18:13:20.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:20.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:13:20.488 -07 000000459 INF: FPGA: Recv ZSGSRD 29555
17-03-17 18:13:20.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:20.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:13:20.498 -07 000000627 INF: FPGA: Recv ZSGSRD 29554
17-03-17 18:13:20.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:20.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:13:20.508 -07 000000551 INF: FPGA: Recv ZSGSRD 29554
17-03-17 18:13:20.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:20.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:13:20.518 -07 000000618 INF: FPGA: Recv ZSGSRD 29552
17-03-17 18:13:20.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:20.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:13:20.528 -07 000000512 INF: FPGA: Recv ZSGSRD 29552
17-03-17 18:13:20.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:20.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:13:20.538 -07 000000618 INF: FPGA: Recv ZSGSRD 29553
17-03-17 18:13:20.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:20.548 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:13:20.548 -07 000000502 INF: FPGA: Recv ZPIEZORD 25081
17-03-17 18:13:20.558 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:20.558 -07 000000610 INF: Z Motor: Piezo is near 33.6 V (nominally 0 to 100 V), expect near 43.4 V, since DAC is at 4.339 V. Piezo Error = -9.8 V.
17-03-17 18:13:20.558 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.2 um, Read 10 ADC samples: Avg = 29553 (-129.4 uncal um), Error = 0.8 uncal um, Median = 29552 (-129.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 29547 (-129.4 uncal um), Max = 29560 (-129.4 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 18:13:20.558 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29553, posNoise = 7, negNoise = 6
17-03-17 18:13:20.558 -07 000000610 INF: Z Motor: After move to -0.130176, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:13:20.558 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 18:13:20.558 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:13:20.558 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:13:20.558 -07 000000433 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:13:20.558 -07 000000459 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:13:20.558 -07 000000551 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:13:20.558 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:13:20.558 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:13:20.558 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:13:20.558 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 18:13:20.558 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:13:20.558 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:13:20.558 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:13:20.558 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 18:13:20.558 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:13:20.568 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 18:13:20.568 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:13:20.568 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 18:13:20.568 -07 000000551 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 18:13:20.568 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 18:13:20.568 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 18:13:20.578 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 392 392 188 188 28614 150\n [Camera]
17-03-17 18:13:20.778 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:13:21.168 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 584
17-03-17 18:13:21.168 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 584
17-03-17 18:13:21.168 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:13:21.168 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 584
17-03-17 18:13:21.168 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 584
17-03-17 18:13:21.168 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:13:21.178 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:13:21.178 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-17 18:13:21.178 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:13:21.178 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 18:13:21.358 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28614 777
17-03-17 18:13:21.508 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP turning grn on 927
17-03-17 18:13:21.558 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 381 ms.
17-03-17 18:13:21.568 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 18:13:21.568 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:13:21.568 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 391 ms.
17-03-17 18:13:21.568 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 18:13:21.568 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:13:21.568 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:13:21.568 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 9. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=90, R2=99, Total=189. Warn if over 250 bubbles per interval.
17-03-17 18:13:21.578 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:13:21.578 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:13:21.578 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 408 ms.
17-03-17 18:13:21.578 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-17 18:13:21.698 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1115
17-03-17 18:13:21.698 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1115
17-03-17 18:13:21.698 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:13:21.698 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:13:21.698 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 2468220576, 0x0, 391868352) start.
17-03-17 18:13:21.698 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1115
17-03-17 18:13:21.698 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1115
17-03-17 18:13:21.698 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:13:21.708 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:13:21.708 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1056706608, 0x0, 418435064) start.
17-03-17 18:13:21.888 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP 1310
17-03-17 18:13:21.888 -07 000000551 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:13:21.888 -07 000000610 INF: FPGA: 'CAMDBLSNAP 392 392 188 188 28614 150' command took 4 ms to send, 1308 ms to get response, and 1317 ms overall
17-03-17 18:13:21.898 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 18:13:21.898 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 12 at Y-position 68.20556640625, Z-Position -0.130178093436597. ------
17-03-17 18:13:21.898 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:13:21.898 -07 000000618 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.0426 mm, moving Z to -0.13678 mm
17-03-17 18:13:21.898 -07 000000618 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:13:21.898 -07 000000551 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:13:21.908 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 18:13:21.908 -07 000000433 INF: Y Motor: Entering MoveAbsStepped (target = 110468 steps, sync = True, waitForSettling = True)
17-03-17 18:13:21.908 -07 000000433 INF: Y Motor: Moving to 69.0426 mm, started at 68.2056 mm, delta = 0.8370 mm
17-03-17 18:13:21.908 -07 000000541 INF: Z Motor: Entering MoveAbsStepped (DAC = 29879, sync = True, waitForSettling = False)
17-03-17 18:13:21.908 -07 000000541 INF: Z Motor: Moving to -0.136777 mm, started at -0.130178 mm, distance = -6.60 um
17-03-17 18:13:21.908 -07 000000433 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:13:21.908 -07 000000486 INF: FPGA: Recv YRDPOS 139686
17-03-17 18:13:21.918 -07 000000433 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:21.918 -07 000000541 INF: FPGA: Xmit ZDACW 29879\n [Z Motor]
17-03-17 18:13:21.918 -07 000000433 INF: Y Motor: Encoder = 139686 = motor step 109129.7 = 68.2061 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:13:21.918 -07 000000012 INF: FPGA: Recv ZDACW
17-03-17 18:13:21.918 -07 000000433 INF: Y Motor: Last commanded position = 68.2126 mm (109140.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:13:21.918 -07 000000433 INF: Y Motor: Moving 1338 steps-14
17-03-17 18:13:21.928 -07 000000512 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:13:21.928 -07 000000541 INF: FPGA: 'ZDACW 29879' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 18:13:21.938 -07 000000433 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:13:21.948 -07 000000541 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:13:21.948 -07 000000012 INF: FPGA: Recv ZDACR 29879
17-03-17 18:13:21.958 -07 000000541 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:13:21.958 -07 000000541 INF: Z Motor: MoveAbsStepped took 49 ms (did NOT wait for settling yet))
17-03-17 18:13:22.088 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 2468220576, 0x0, 391868352) end. Duration was 383 ms.
17-03-17 18:13:22.088 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 18:13:22.088 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:13:22.088 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1056706608, 0x0, 418435064) end. Duration was 382 ms.
17-03-17 18:13:22.088 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 383 ms.
17-03-17 18:13:22.088 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:13:22.088 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:13:22.098 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 14 ms.
17-03-17 18:13:22.098 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-17 18:13:22.098 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 18:13:22.128 -07 000000627 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:13:22.128 -07 000000512 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 18:13:22.308 -07 000000012 INF: FPGA: Recv YMVTILE
17-03-17 18:13:22.308 -07 000000433 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 393 ms overall
17-03-17 18:13:22.348 -07 000000433 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:13:22.348 -07 000000608 INF: FPGA: Recv YRDPOS 141369
17-03-17 18:13:22.358 -07 000000433 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:13:22.358 -07 000000433 INF: Y Motor: Encoder = 141369 = motor step 110444.5 = 69.0278 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:13:22.358 -07 000000433 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-17 18:13:22.358 -07 000000433 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.837 mm, average velocity = 2.124 mm/sec
17-03-17 18:13:23.308 -07 000000433 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:13:23.308 -07 000000541 INF: FPGA: Recv YRDPOS 141369
17-03-17 18:13:23.318 -07 000000433 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:13:23.318 -07 000000433 INF: Y Motor: Encoder = 141369 = motor step 110444.5 = 69.0278 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:13:23.338 -07 000000433 INF: Y Motor: After move to 69.042610, error = -0.014778, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:13:23.338 -07 000000433 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:13:23.338 -07 000000433 INF: Y Motor: Moved to 69.0278 after 1435 ms (table move)
17-03-17 18:13:23.338 -07 000000618 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136777 mm (DAC = 29879)
17-03-17 18:13:23.338 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:13:23.348 -07 000000608 INF: FPGA: Recv ZSGSRD 30582
17-03-17 18:13:23.358 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:13:23.358 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:13:23.358 -07 000000551 INF: FPGA: Recv ZSGSRD 30580
17-03-17 18:13:23.368 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:23.368 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:13:23.368 -07 000000551 INF: FPGA: Recv ZSGSRD 30588
17-03-17 18:13:23.378 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:23.378 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:13:23.378 -07 000000433 INF: FPGA: Recv ZSGSRD 30589
17-03-17 18:13:23.388 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:23.388 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:13:23.388 -07 000000433 INF: FPGA: Recv ZSGSRD 30585
17-03-17 18:13:23.398 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:23.398 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:13:23.398 -07 000000433 INF: FPGA: Recv ZSGSRD 30578
17-03-17 18:13:23.408 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:23.408 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:13:23.408 -07 000000433 INF: FPGA: Recv ZSGSRD 30574
17-03-17 18:13:23.418 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:23.418 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:13:23.418 -07 000000433 INF: FPGA: Recv ZSGSRD 30580
17-03-17 18:13:23.428 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:23.428 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:13:23.428 -07 000000433 INF: FPGA: Recv ZSGSRD 30578
17-03-17 18:13:23.438 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:23.438 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:13:23.438 -07 000000627 INF: FPGA: Recv ZSGSRD 30579
17-03-17 18:13:23.448 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:23.448 -07 000000618 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:13:23.448 -07 000000627 INF: FPGA: Recv ZPIEZORD 26467
17-03-17 18:13:23.458 -07 000000618 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:23.458 -07 000000618 INF: Z Motor: Piezo is near 36.5 V (nominally 0 to 100 V), expect near 45.6 V, since DAC is at 4.559 V. Piezo Error = -9.1 V.
17-03-17 18:13:23.458 -07 000000618 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.8 um, Read 10 ADC samples: Avg = 30581 (-136.0 uncal um), Error = 0.8 uncal um, Median = 30580 (-136.0 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 30574 (-135.9 uncal um), Max = 30589 (-136.0 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 18:13:23.458 -07 000000618 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30581, posNoise = 8, negNoise = 7
17-03-17 18:13:23.458 -07 000000618 INF: Z Motor: After move to -0.136777, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:13:23.458 -07 000000618 INF: Z Motor: Settle wait time = 1438 ms, measure time = 111 ms (allowed 150 ms), total time = 1549 ms
17-03-17 18:13:23.458 -07 000000618 INF: Z Motor: Waiting extra 39 ms after reading position to reach expected total of 150 ms
17-03-17 18:13:23.498 -07 000000618 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1593 ms
17-03-17 18:13:23.498 -07 000000618 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:13:23.498 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:13:23.498 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:13:23.498 -07 000000551 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:13:23.508 -07 000000433 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:13:23.508 -07 000000541 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:13:23.508 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:13:23.508 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 18:13:23.508 -07 000000541 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:13:23.508 -07 000000541 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:13:23.508 -07 000000541 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:13:23.518 -07 000000541 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 18:13:23.518 -07 000000541 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-17 18:13:23.518 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:13:23.568 -07 000000608 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:13:23.768 -07 000000459 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:13:23.768 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:13:23.768 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:13:23.768 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2520517904, 0x0, 559484976) start.
17-03-17 18:13:23.808 -07 000000512 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:13:23.808 -07 000000608 INF: FPGA: Recv CAMSNAP
17-03-17 18:13:23.808 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 281 ms to get response, and 285 ms overall
17-03-17 18:13:23.878 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2520517904, 0x0, 559484976) end. Duration was 116 ms.
17-03-17 18:13:23.878 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:13:23.888 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-17 18:13:23.888 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-17 18:13:23.908 -07 000000012 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:13:23.908 -07 000000618 INF: Autofocus start
17-03-17 18:13:23.908 -07 000000618 INF: MeasureProfile start
17-03-17 18:13:23.908 -07 000000551 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:13:23.918 -07 000000012 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:13:23.918 -07 000000012 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:13:23.918 -07 000000618 INF: MeasureProfile done
17-03-17 18:13:23.918 -07 000000618 INF: X=16  Z correction [um]=0.0530179
17-03-17 18:13:23.918 -07 000000618 INF: Autofocus finished
17-03-17 18:13:24.118 -07 000000459 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:13:24.118 -07 000000012 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:13:24.118 -07 000000610 INF: ------------ Scan Snapping tile 12 at Y-position 69.02783203125, Z-position -0.136782183518327. ----------
17-03-17 18:13:24.118 -07 000000610 INF: Cycle	10	Tile	12	Exposure Settings		A	392	G	188	T	188	C	392
17-03-17 18:13:24.128 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28404, sync = True, waitForSettling = True)
17-03-17 18:13:24.128 -07 000000610 INF: Z Motor: Moving to -0.130025 mm, started at -0.136782 mm, distance = 6.76 um
17-03-17 18:13:24.128 -07 000000610 INF: FPGA: Xmit ZDACW 28404\n [Z Motor]
17-03-17 18:13:24.128 -07 000000512 INF: FPGA: Recv ZDACW
17-03-17 18:13:24.138 -07 000000610 INF: FPGA: 'ZDACW 28404' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:24.138 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:13:24.138 -07 000000512 INF: FPGA: Recv ZDACR 28404
17-03-17 18:13:24.148 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:24.148 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:13:24.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:13:24.298 -07 000000512 INF: FPGA: Recv ZSGSRD 29531
17-03-17 18:13:24.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:13:24.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:13:24.308 -07 000000012 INF: FPGA: Recv ZSGSRD 29533
17-03-17 18:13:24.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:13:24.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:13:24.318 -07 000000012 INF: FPGA: Recv ZSGSRD 29528
17-03-17 18:13:24.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:24.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:13:24.328 -07 000000433 INF: FPGA: Recv ZSGSRD 29529
17-03-17 18:13:24.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:24.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:13:24.338 -07 000000433 INF: FPGA: Recv ZSGSRD 29535
17-03-17 18:13:24.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:24.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:13:24.348 -07 000000433 INF: FPGA: Recv ZSGSRD 29531
17-03-17 18:13:24.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:24.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:13:24.358 -07 000000433 INF: FPGA: Recv ZSGSRD 29532
17-03-17 18:13:24.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:24.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:13:24.368 -07 000000502 INF: FPGA: Recv ZSGSRD 29530
17-03-17 18:13:24.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:24.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:13:24.378 -07 000000012 INF: FPGA: Recv ZSGSRD 29536
17-03-17 18:13:24.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:24.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:13:24.388 -07 000000502 INF: FPGA: Recv ZSGSRD 29531
17-03-17 18:13:24.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:24.398 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:13:24.398 -07 000000502 INF: FPGA: Recv ZPIEZORD 25064
17-03-17 18:13:24.408 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:24.408 -07 000000610 INF: Z Motor: Piezo is near 33.5 V (nominally 0 to 100 V), expect near 43.3 V, since DAC is at 4.334 V. Piezo Error = -9.8 V.
17-03-17 18:13:24.408 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.0 um, Read 10 ADC samples: Avg = 29532 (-129.3 uncal um), Error = 0.8 uncal um, Median = 29531 (-129.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 29528 (-129.2 uncal um), Max = 29536 (-129.3 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 18:13:24.408 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29532, posNoise = 4, negNoise = 4
17-03-17 18:13:24.408 -07 000000610 INF: Z Motor: After move to -0.130025, error = -0.000018, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:13:24.408 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 18:13:24.408 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:13:24.408 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:13:24.408 -07 000000541 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:13:24.408 -07 000000459 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:13:24.408 -07 000000486 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:13:24.408 -07 000000608 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:13:24.408 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:13:24.408 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:13:24.408 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 18:13:24.408 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:13:24.408 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:13:24.408 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:13:24.418 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 18:13:24.418 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:13:24.418 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 18:13:24.418 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:13:24.428 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 18:13:24.428 -07 000000486 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 18:13:24.428 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 11 ms.
17-03-17 18:13:24.428 -07 000000608 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 18:13:24.428 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 392 392 188 188 28580 150\n [Camera]
17-03-17 18:13:24.628 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:13:24.898 -07 000000551 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 10, FrontChillerTemperature: 3.989471,
17-03-17 18:13:25.018 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 584
17-03-17 18:13:25.018 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 584
17-03-17 18:13:25.018 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:13:25.018 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:13:25.018 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 1092128872, 0x0, 391868352) start.
17-03-17 18:13:25.018 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 584
17-03-17 18:13:25.018 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 584
17-03-17 18:13:25.028 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:13:25.028 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:13:25.028 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 1127551136, 0x0, 418435064) start.
17-03-17 18:13:25.208 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28580 777
17-03-17 18:13:25.358 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP turning grn on 927
17-03-17 18:13:25.418 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 1092128872, 0x0, 391868352) end. Duration was 398 ms.
17-03-17 18:13:25.418 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-17 18:13:25.418 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:13:25.418 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 1127551136, 0x0, 418435064) end. Duration was 398 ms.
17-03-17 18:13:25.418 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-17 18:13:25.418 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:13:25.428 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:13:25.428 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 18:13:25.428 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:13:25.438 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-17 18:13:25.548 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1115
17-03-17 18:13:25.548 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1115
17-03-17 18:13:25.688 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1115
17-03-17 18:13:25.688 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1115
17-03-17 18:13:25.688 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:13:25.688 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:13:25.688 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:13:25.688 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-17 18:13:25.698 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:13:25.698 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 2468220576, 0x0, 418435064) start.
17-03-17 18:13:25.738 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP 1307
17-03-17 18:13:25.738 -07 000000433 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:13:25.738 -07 000000610 INF: FPGA: 'CAMDBLSNAP 392 392 188 188 28580 150' command took 2 ms to send, 1309 ms to get response, and 1315 ms overall
17-03-17 18:13:25.748 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 18:13:25.748 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 13 at Y-position 69.02783203125, Z-Position -0.13004318498162. ------
17-03-17 18:13:25.748 -07 000000433 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.8726 mm, moving Z to -0.13644 mm
17-03-17 18:13:25.748 -07 000000433 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:13:25.748 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:13:25.748 -07 000000486 INF: Y Motor: Entering MoveAbsStepped (target = 111796 steps, sync = True, waitForSettling = True)
17-03-17 18:13:25.748 -07 000000486 INF: Y Motor: Moving to 69.8726 mm, started at 69.0278 mm, delta = 0.8448 mm
17-03-17 18:13:25.748 -07 000000608 INF: Z Motor: Entering MoveAbsStepped (DAC = 29805, sync = True, waitForSettling = False)
17-03-17 18:13:25.748 -07 000000608 INF: Z Motor: Moving to -0.136439 mm, started at -0.130043 mm, distance = -6.40 um
17-03-17 18:13:25.758 -07 000000486 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:13:25.768 -07 000000608 INF: FPGA: Xmit ZDACW 29805\n [Z Motor]
17-03-17 18:13:26.068 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 2468220576, 0x0, 418435064) end. Duration was 371 ms.
17-03-17 18:13:26.068 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 372 ms.
17-03-17 18:13:26.068 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:13:26.068 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 375 ms.
17-03-17 18:13:26.068 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-17 18:13:26.068 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:13:26.078 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 18:13:26.078 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 18:13:26.078 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-17 18:13:26.078 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 18:13:26.088 -07 000000541 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:13:26.088 -07 000000541 INF: FPGA: Recv YRDPOS 141369
17-03-17 18:13:26.088 -07 000000541 INF: FPGA: Recv ZDACW
17-03-17 18:13:26.088 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 334 ms to get response, and 338 ms overall
17-03-17 18:13:26.088 -07 000000486 INF: FPGA: 'YRDPOS' command took 0 ms to send, 324 ms to get response, and 336 ms overall
17-03-17 18:13:26.088 -07 000000486 INF: Y Motor: Encoder = 141369 = motor step 110444.5 = 69.0278 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:13:26.088 -07 000000486 INF: Y Motor: Last commanded position = 69.0426 mm (110468.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:13:26.088 -07 000000486 INF: Y Motor: Moving 1352 steps-30
17-03-17 18:13:26.088 -07 000000608 INF: FPGA: 'ZDACW 29805' command took 0 ms to send, 314 ms to get response, and 336 ms overall
17-03-17 18:13:26.088 -07 000000512 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:13:26.098 -07 000000486 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:13:26.108 -07 000000608 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:13:26.108 -07 000000012 INF: FPGA: Recv ZDACR 29805
17-03-17 18:13:26.118 -07 000000608 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-17 18:13:26.118 -07 000000608 INF: Z Motor: MoveAbsStepped took 362 ms (did NOT wait for settling yet))
17-03-17 18:13:26.288 -07 000000608 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:13:26.288 -07 000000512 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 198 ms to get response, and 203 ms overall
17-03-17 18:13:26.468 -07 000000541 INF: FPGA: Recv YMVTILE
17-03-17 18:13:26.468 -07 000000486 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 383 ms overall
17-03-17 18:13:26.508 -07 000000486 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:13:26.508 -07 000000012 INF: FPGA: Recv YRDPOS 143081
17-03-17 18:13:26.518 -07 000000486 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:13:26.518 -07 000000486 INF: Y Motor: Encoder = 143081 = motor step 111782.0 = 69.8638 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:13:26.518 -07 000000486 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-17 18:13:26.518 -07 000000486 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 383 ms, distance = 0.845 mm, average velocity = 2.206 mm/sec
17-03-17 18:13:26.568 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:13:26.568 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 9. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=90, R2=99, Total=189. Warn if over 250 bubbles per interval.
17-03-17 18:13:27.468 -07 000000486 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:13:27.468 -07 000000541 INF: FPGA: Recv YRDPOS 143081
17-03-17 18:13:27.478 -07 000000486 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:13:27.478 -07 000000486 INF: Y Motor: Encoder = 143081 = motor step 111782.0 = 69.8638 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:13:27.498 -07 000000486 INF: Y Motor: After move to 69.872612, error = -0.008842, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:13:27.498 -07 000000486 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:13:27.498 -07 000000486 INF: Y Motor: Moved to 69.8638 after 1743 ms (table move)
17-03-17 18:13:27.498 -07 000000433 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136439 mm (DAC = 29805)
17-03-17 18:13:27.498 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:13:27.498 -07 000000608 INF: FPGA: Recv ZSGSRD 30519
17-03-17 18:13:27.508 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 18:13:27.508 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:13:27.508 -07 000000608 INF: FPGA: Recv ZSGSRD 30524
17-03-17 18:13:27.518 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:27.518 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:13:27.518 -07 000000541 INF: FPGA: Recv ZSGSRD 30527
17-03-17 18:13:27.528 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:27.528 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:13:27.528 -07 000000012 INF: FPGA: Recv ZSGSRD 30532
17-03-17 18:13:27.538 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:27.538 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:13:27.538 -07 000000012 INF: FPGA: Recv ZSGSRD 30531
17-03-17 18:13:27.548 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:27.548 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:13:27.548 -07 000000541 INF: FPGA: Recv ZSGSRD 30531
17-03-17 18:13:27.558 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:27.558 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:13:27.558 -07 000000012 INF: FPGA: Recv ZSGSRD 30525
17-03-17 18:13:27.568 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:27.568 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:13:27.568 -07 000000512 INF: FPGA: Recv ZSGSRD 30523
17-03-17 18:13:27.578 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:27.578 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:13:27.578 -07 000000512 INF: FPGA: Recv ZSGSRD 30522
17-03-17 18:13:27.588 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:27.588 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:13:27.588 -07 000000608 INF: FPGA: Recv ZSGSRD 30522
17-03-17 18:13:27.598 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:27.598 -07 000000433 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:13:27.598 -07 000000012 INF: FPGA: Recv ZPIEZORD 26383
17-03-17 18:13:27.608 -07 000000433 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:27.608 -07 000000433 INF: Z Motor: Piezo is near 36.4 V (nominally 0 to 100 V), expect near 45.5 V, since DAC is at 4.548 V. Piezo Error = -9.1 V.
17-03-17 18:13:27.608 -07 000000433 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.4 um, Read 10 ADC samples: Avg = 30526 (-135.6 uncal um), Error = 0.8 uncal um, Median = 30524 (-135.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 30519 (-135.6 uncal um), Max = 30532 (-135.7 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 18:13:27.608 -07 000000433 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30526, posNoise = 6, negNoise = 7
17-03-17 18:13:27.608 -07 000000433 INF: Z Motor: After move to -0.136439, error = 0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:13:27.608 -07 000000433 INF: Z Motor: Settle wait time = 1746 ms, measure time = 106 ms (allowed 150 ms), total time = 1852 ms
17-03-17 18:13:27.608 -07 000000433 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-17 18:13:27.658 -07 000000433 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1904 ms
17-03-17 18:13:27.658 -07 000000433 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:13:27.658 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:13:27.658 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:13:27.658 -07 000000012 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:13:27.658 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:13:27.658 -07 000000608 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:13:27.658 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:13:27.658 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:13:27.658 -07 000000608 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:13:27.668 -07 000000608 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:13:27.668 -07 000000608 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:13:27.668 -07 000000608 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 18:13:27.668 -07 000000608 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-17 18:13:27.678 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:13:27.718 -07 000000486 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:13:27.918 -07 000000512 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:13:27.918 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:13:27.918 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:13:27.918 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2520517904, 0x0, 559484976) start.
17-03-17 18:13:27.958 -07 000000012 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:13:27.958 -07 000000608 INF: FPGA: Recv CAMSNAP
17-03-17 18:13:27.958 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 276 ms to get response, and 284 ms overall
17-03-17 18:13:28.038 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2520517904, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 18:13:28.038 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:13:28.038 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 18:13:28.038 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-17 18:13:28.058 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:13:28.058 -07 000000012 INF: Autofocus start
17-03-17 18:13:28.058 -07 000000012 INF: MeasureProfile start
17-03-17 18:13:28.058 -07 000000541 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:13:28.068 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:13:28.068 -07 000000512 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:13:28.068 -07 000000012 INF: MeasureProfile done
17-03-17 18:13:28.068 -07 000000012 INF: X=16  Z correction [um]=0.0530179
17-03-17 18:13:28.068 -07 000000012 INF: Autofocus finished
17-03-17 18:13:28.268 -07 000000486 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:13:28.268 -07 000000512 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:13:28.268 -07 000000610 INF: ------------ Scan Snapping tile 13 at Y-position 69.86376953125, Z-position -0.13642885185053. ----------
17-03-17 18:13:28.268 -07 000000610 INF: Cycle	10	Tile	13	Exposure Settings		A	392	G	188	T	188	C	392
17-03-17 18:13:28.278 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28329, sync = True, waitForSettling = True)
17-03-17 18:13:28.278 -07 000000610 INF: Z Motor: Moving to -0.129682 mm, started at -0.136429 mm, distance = 6.75 um
17-03-17 18:13:28.278 -07 000000610 INF: FPGA: Xmit ZDACW 28329\n [Z Motor]
17-03-17 18:13:28.278 -07 000000486 INF: FPGA: Recv ZDACW
17-03-17 18:13:28.288 -07 000000610 INF: FPGA: 'ZDACW 28329' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:13:28.288 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:13:28.288 -07 000000486 INF: FPGA: Recv ZDACR 28329
17-03-17 18:13:28.298 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:28.298 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:13:28.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:13:28.448 -07 000000541 INF: FPGA: Recv ZSGSRD 29471
17-03-17 18:13:28.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:13:28.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:13:28.458 -07 000000433 INF: FPGA: Recv ZSGSRD 29479
17-03-17 18:13:28.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:28.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:13:28.468 -07 000000593 INF: FPGA: Recv ZSGSRD 29479
17-03-17 18:13:28.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:28.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:13:28.478 -07 000000012 INF: FPGA: Recv ZSGSRD 29477
17-03-17 18:13:28.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:28.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:13:28.488 -07 000000593 INF: FPGA: Recv ZSGSRD 29479
17-03-17 18:13:28.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:28.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:13:28.498 -07 000000433 INF: FPGA: Recv ZSGSRD 29471
17-03-17 18:13:28.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:28.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:13:28.508 -07 000000541 INF: FPGA: Recv ZSGSRD 29475
17-03-17 18:13:28.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:28.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:13:28.518 -07 000000512 INF: FPGA: Recv ZSGSRD 29480
17-03-17 18:13:28.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:28.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:13:28.528 -07 000000501 INF: FPGA: Recv ZSGSRD 29472
17-03-17 18:13:28.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:28.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:13:28.538 -07 000000012 INF: FPGA: Recv ZSGSRD 29475
17-03-17 18:13:28.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:28.548 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:13:28.548 -07 000000501 INF: FPGA: Recv ZPIEZORD 24982
17-03-17 18:13:28.558 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:28.558 -07 000000610 INF: Z Motor: Piezo is near 33.4 V (nominally 0 to 100 V), expect near 43.2 V, since DAC is at 4.323 V. Piezo Error = -9.9 V.
17-03-17 18:13:28.558 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.7 um, Read 10 ADC samples: Avg = 29476 (-128.9 uncal um), Error = 0.8 uncal um, Median = 29476 (-128.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29471 (-128.9 uncal um), Max = 29480 (-128.9 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 18:13:28.558 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29476, posNoise = 4, negNoise = 5
17-03-17 18:13:28.558 -07 000000610 INF: Z Motor: After move to -0.129682, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:13:28.558 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 18:13:28.558 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:13:28.558 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:13:28.558 -07 000000012 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:13:28.558 -07 000000593 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:13:28.558 -07 000000608 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:13:28.558 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:13:28.558 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:13:28.558 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:13:28.558 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:13:28.558 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:13:28.558 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-17 18:13:28.558 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:13:28.558 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 18:13:28.558 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:13:28.568 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 18:13:28.568 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:13:28.578 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 13 ms.
17-03-17 18:13:28.578 -07 000000608 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 18 ms.
17-03-17 18:13:28.578 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 13 ms.
17-03-17 18:13:28.578 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 18:13:28.578 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 392 392 188 188 28506 150\n [Camera]
17-03-17 18:13:28.778 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:13:29.178 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 584
17-03-17 18:13:29.178 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 584
17-03-17 18:13:29.178 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:13:29.178 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:13:29.178 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 18:13:29.178 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 584
17-03-17 18:13:29.178 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 584
17-03-17 18:13:29.178 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:13:29.288 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:13:29.298 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-17 18:13:29.368 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28506 777
17-03-17 18:13:29.518 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP turning grn on 927
17-03-17 18:13:29.568 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 397 ms.
17-03-17 18:13:29.568 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 18:13:29.568 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:13:29.578 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:13:29.578 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 18:13:29.688 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 394 ms.
17-03-17 18:13:29.688 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 18:13:29.688 -07 000000433 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:13:29.688 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:13:29.698 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 519 ms.
17-03-17 18:13:29.708 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1115
17-03-17 18:13:29.708 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1115
17-03-17 18:13:29.708 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:13:29.708 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:13:29.708 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 2468220576, 0x0, 391868352) start.
17-03-17 18:13:29.708 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1115
17-03-17 18:13:29.708 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1115
17-03-17 18:13:29.708 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:13:29.708 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:13:29.708 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 2503642840, 0x0, 418435064) start.
17-03-17 18:13:29.898 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP 1308
17-03-17 18:13:29.898 -07 000000608 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:13:29.898 -07 000000610 INF: FPGA: 'CAMDBLSNAP 392 392 188 188 28506 150' command took 2 ms to send, 1303 ms to get response, and 1315 ms overall
17-03-17 18:13:29.898 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 18:13:29.898 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 14 at Y-position 69.86376953125, Z-Position -0.129683429101681. ------
17-03-17 18:13:29.898 -07 000000415 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:13:29.898 -07 000000012 INF: Y Motor: MoveYZ optimized starting. Moving Y to 70.7026 mm, moving Z to -0.13606 mm
17-03-17 18:13:29.898 -07 000000012 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:13:29.908 -07 000000541 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:13:29.908 -07 000000415 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 18:13:29.908 -07 000000512 INF: Y Motor: Entering MoveAbsStepped (target = 113124 steps, sync = True, waitForSettling = True)
17-03-17 18:13:29.908 -07 000000512 INF: Y Motor: Moving to 70.7026 mm, started at 69.8638 mm, delta = 0.8388 mm
17-03-17 18:13:29.908 -07 000000415 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:13:29.908 -07 000000501 INF: Z Motor: Entering MoveAbsStepped (DAC = 29721, sync = True, waitForSettling = False)
17-03-17 18:13:29.908 -07 000000501 INF: Z Motor: Moving to -0.136054 mm, started at -0.129683 mm, distance = -6.37 um
17-03-17 18:13:29.918 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:13:29.918 -07 000000459 INF: FPGA: Recv YRDPOS 143082
17-03-17 18:13:29.928 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-17 18:13:29.928 -07 000000512 INF: Y Motor: Encoder = 143082 = motor step 111782.8 = 69.8643 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:13:29.928 -07 000000501 INF: FPGA: Xmit ZDACW 29721\n [Z Motor]
17-03-17 18:13:29.928 -07 000000551 INF: FPGA: Recv ZDACW
17-03-17 18:13:29.928 -07 000000512 INF: Y Motor: Last commanded position = 69.8726 mm (111796.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:13:29.928 -07 000000512 INF: Y Motor: Moving 1341 steps-18
17-03-17 18:13:29.938 -07 000000501 INF: FPGA: 'ZDACW 29721' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-17 18:13:29.948 -07 000000512 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:13:29.958 -07 000000501 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:13:29.958 -07 000000627 INF: FPGA: Recv ZDACR 29721
17-03-17 18:13:29.968 -07 000000501 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:13:29.968 -07 000000501 INF: Z Motor: MoveAbsStepped took 55 ms (did NOT wait for settling yet))
17-03-17 18:13:30.108 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 2468220576, 0x0, 391868352) end. Duration was 400 ms.
17-03-17 18:13:30.108 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 18:13:30.108 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:13:30.108 -07 000000480 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:13:30.108 -07 000000415 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 197 ms to get response, and 203 ms overall
17-03-17 18:13:30.108 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 2503642840, 0x0, 418435064) end. Duration was 401 ms.
17-03-17 18:13:30.108 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-17 18:13:30.108 -07 000000593 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:13:30.118 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:13:30.118 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-17 18:13:30.118 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:13:30.128 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 417 ms.
17-03-17 18:13:30.258 -07 000000608 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 10, FrontChillerTemperature: 4.009895,
17-03-17 18:13:30.318 -07 000000459 INF: FPGA: Recv YMVTILE
17-03-17 18:13:30.318 -07 000000512 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 394 ms overall
17-03-17 18:13:30.358 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:13:30.358 -07 000000433 INF: FPGA: Recv YRDPOS 144771
17-03-17 18:13:30.368 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:13:30.368 -07 000000512 INF: Y Motor: Encoder = 144771 = motor step 113102.3 = 70.6890 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:13:30.368 -07 000000512 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 18:13:30.368 -07 000000512 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 395 ms, distance = 0.839 mm, average velocity = 2.124 mm/sec
17-03-17 18:13:31.318 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:13:31.318 -07 000000501 INF: FPGA: Recv YRDPOS 144771
17-03-17 18:13:31.328 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:13:31.328 -07 000000512 INF: Y Motor: Encoder = 144771 = motor step 113102.3 = 70.6890 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:13:31.348 -07 000000512 INF: Y Motor: After move to 70.702606, error = -0.013641, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:13:31.348 -07 000000512 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:13:31.348 -07 000000512 INF: Y Motor: Moved to 70.6890 after 1437 ms (table move)
17-03-17 18:13:31.348 -07 000000012 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136054 mm (DAC = 29721)
17-03-17 18:13:31.348 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:13:31.348 -07 000000626 INF: FPGA: Recv ZSGSRD 30472
17-03-17 18:13:31.358 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:13:31.358 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:13:31.358 -07 000000593 INF: FPGA: Recv ZSGSRD 30462
17-03-17 18:13:31.368 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:31.368 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:13:31.368 -07 000000512 INF: FPGA: Recv ZSGSRD 30470
17-03-17 18:13:31.378 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:31.378 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:13:31.378 -07 000000501 INF: FPGA: Recv ZSGSRD 30463
17-03-17 18:13:31.388 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:31.388 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:13:31.388 -07 000000512 INF: FPGA: Recv ZSGSRD 30468
17-03-17 18:13:31.398 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:31.398 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:13:31.398 -07 000000593 INF: FPGA: Recv ZSGSRD 30469
17-03-17 18:13:31.408 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:31.408 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:13:31.408 -07 000000626 INF: FPGA: Recv ZSGSRD 30472
17-03-17 18:13:31.418 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:31.418 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:13:31.418 -07 000000512 INF: FPGA: Recv ZSGSRD 30466
17-03-17 18:13:31.428 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:31.428 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:13:31.428 -07 000000512 INF: FPGA: Recv ZSGSRD 30462
17-03-17 18:13:31.438 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:31.438 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:13:31.438 -07 000000501 INF: FPGA: Recv ZSGSRD 30467
17-03-17 18:13:31.448 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:31.448 -07 000000012 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:13:31.448 -07 000000593 INF: FPGA: Recv ZPIEZORD 26346
17-03-17 18:13:31.458 -07 000000012 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:31.458 -07 000000012 INF: Z Motor: Piezo is near 36.3 V (nominally 0 to 100 V), expect near 45.4 V, since DAC is at 4.535 V. Piezo Error = -9.1 V.
17-03-17 18:13:31.458 -07 000000012 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.1 um, Read 10 ADC samples: Avg = 30467 (-135.3 uncal um), Error = 0.8 uncal um, Median = 30468 (-135.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 30462 (-135.2 uncal um), Max = 30472 (-135.3 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 18:13:31.458 -07 000000012 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30467, posNoise = 5, negNoise = 5
17-03-17 18:13:31.458 -07 000000012 INF: Z Motor: After move to -0.136054, error = 0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:13:31.458 -07 000000012 INF: Z Motor: Settle wait time = 1440 ms, measure time = 106 ms (allowed 150 ms), total time = 1546 ms
17-03-17 18:13:31.458 -07 000000012 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-17 18:13:31.508 -07 000000012 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1600 ms
17-03-17 18:13:31.508 -07 000000012 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:13:31.508 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:13:31.508 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:13:31.508 -07 000000593 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:13:31.508 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:13:31.508 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:13:31.508 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:13:31.508 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 18:13:31.508 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:13:31.518 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 18:13:31.518 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:13:31.518 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 18:13:31.518 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 18:13:31.528 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:13:31.568 -07 000000593 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:13:31.568 -07 000000501 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:13:31.578 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 9. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=90, R2=99, Total=189. Warn if over 250 bubbles per interval.
17-03-17 18:13:31.768 -07 000000012 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:13:31.768 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:13:31.768 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:13:31.768 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 675221432, 0x0, 559484976) start.
17-03-17 18:13:31.808 -07 000000512 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:13:31.808 -07 000000593 INF: FPGA: Recv CAMSNAP
17-03-17 18:13:31.808 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 2 ms to send, 277 ms to get response, and 284 ms overall
17-03-17 18:13:31.888 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 675221432, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 18:13:31.888 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:13:31.888 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-17 18:13:31.888 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-17 18:13:31.908 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:13:31.908 -07 000000512 INF: Autofocus start
17-03-17 18:13:31.908 -07 000000512 INF: MeasureProfile start
17-03-17 18:13:31.908 -07 000000012 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:13:31.918 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:13:31.918 -07 000000626 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:13:31.918 -07 000000512 INF: MeasureProfile done
17-03-17 18:13:31.918 -07 000000512 INF: X=-2  Z correction [um]=-0.01313862
17-03-17 18:13:31.918 -07 000000512 INF: Autofocus finished
17-03-17 18:13:32.118 -07 000000627 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:13:32.118 -07 000000626 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:13:32.118 -07 000000610 INF: ------------ Scan Snapping tile 14 at Y-position 70.68896484375, Z-position -0.136049823334166. ----------
17-03-17 18:13:32.118 -07 000000610 INF: Cycle	10	Tile	14	Exposure Settings		A	392	G	188	T	188	C	392
17-03-17 18:13:32.128 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28231, sync = True, waitForSettling = True)
17-03-17 18:13:32.128 -07 000000610 INF: Z Motor: Moving to -0.129233 mm, started at -0.136050 mm, distance = 6.82 um
17-03-17 18:13:32.128 -07 000000610 INF: FPGA: Xmit ZDACW 28231\n [Z Motor]
17-03-17 18:13:32.128 -07 000000627 INF: FPGA: Recv ZDACW
17-03-17 18:13:32.138 -07 000000610 INF: FPGA: 'ZDACW 28231' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:13:32.138 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:13:32.138 -07 000000012 INF: FPGA: Recv ZDACR 28231
17-03-17 18:13:32.148 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:32.148 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:13:32.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:13:32.298 -07 000000593 INF: FPGA: Recv ZSGSRD 29411
17-03-17 18:13:32.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:13:32.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:13:32.308 -07 000000501 INF: FPGA: Recv ZSGSRD 29405
17-03-17 18:13:32.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:32.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:13:32.318 -07 000000480 INF: FPGA: Recv ZSGSRD 29402
17-03-17 18:13:32.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:32.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:13:32.328 -07 000000626 INF: FPGA: Recv ZSGSRD 29410
17-03-17 18:13:32.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:32.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:13:32.338 -07 000000480 INF: FPGA: Recv ZSGSRD 29406
17-03-17 18:13:32.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:32.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:13:32.348 -07 000000415 INF: FPGA: Recv ZSGSRD 29406
17-03-17 18:13:32.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:32.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:13:32.358 -07 000000480 INF: FPGA: Recv ZSGSRD 29405
17-03-17 18:13:32.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:13:32.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:13:32.368 -07 000000512 INF: FPGA: Recv ZSGSRD 29402
17-03-17 18:13:32.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:32.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:13:32.378 -07 000000593 INF: FPGA: Recv ZSGSRD 29406
17-03-17 18:13:32.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:32.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:13:32.388 -07 000000501 INF: FPGA: Recv ZSGSRD 29408
17-03-17 18:13:32.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:32.398 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:13:32.398 -07 000000415 INF: FPGA: Recv ZPIEZORD 24927
17-03-17 18:13:32.408 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:32.408 -07 000000610 INF: Z Motor: Piezo is near 33.3 V (nominally 0 to 100 V), expect near 43.1 V, since DAC is at 4.308 V. Piezo Error = -9.8 V.
17-03-17 18:13:32.408 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.2 um, Read 10 ADC samples: Avg = 29406 (-128.5 uncal um), Error = 0.8 uncal um, Median = 29406 (-128.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29402 (-128.4 uncal um), Max = 29411 (-128.5 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 18:13:32.408 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29406, posNoise = 5, negNoise = 4
17-03-17 18:13:32.408 -07 000000610 INF: Z Motor: After move to -0.129233, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:13:32.408 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 18:13:32.408 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:13:32.408 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:13:32.408 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:13:32.408 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:13:32.408 -07 000000593 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:13:32.408 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:13:32.408 -07 000000415 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:13:32.408 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:13:32.408 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:13:32.408 -07 000000593 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:13:32.408 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:13:32.408 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:13:32.418 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 18:13:32.418 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:13:32.418 -07 000000593 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 18:13:32.418 -07 000000593 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:13:32.428 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 18:13:32.428 -07 000000415 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 18:13:32.428 -07 000000593 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 18:13:32.428 -07 000000593 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 18:13:32.428 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 392 392 188 188 28408 150\n [Camera]
17-03-17 18:13:32.628 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:13:33.018 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 584
17-03-17 18:13:33.018 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 584
17-03-17 18:13:33.018 -07 000000593 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:13:33.018 -07 000000593 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:13:33.018 -07 000000593 INF: Camera: sBCa_ReadImage(785074288, 1056706608, 0x0, 391868352) start.
17-03-17 18:13:33.028 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 584
17-03-17 18:13:33.028 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 584
17-03-17 18:13:33.028 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:13:33.028 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:13:33.028 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 1092128872, 0x0, 418435064) start.
17-03-17 18:13:33.218 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28408 777
17-03-17 18:13:33.358 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning grn on 927
17-03-17 18:13:33.408 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 1092128872, 0x0, 418435064) end. Duration was 381 ms.
17-03-17 18:13:33.408 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 381 ms.
17-03-17 18:13:33.408 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:13:33.408 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:13:33.408 -07 000000593 INF: Camera: sBCa_ReadImage(785074288, 1056706608, 0x0, 391868352) end. Duration was 390 ms.
17-03-17 18:13:33.408 -07 000000593 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-17 18:13:33.408 -07 000000593 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:13:33.418 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 18:13:33.418 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:13:33.418 -07 000000593 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-17 18:13:33.548 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1115
17-03-17 18:13:33.548 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1115
17-03-17 18:13:33.548 -07 000000593 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:13:33.548 -07 000000593 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:13:33.548 -07 000000593 INF: Camera: sBCa_ReadImage(785074288, 1127551136, 0x0, 391868352) start.
17-03-17 18:13:33.558 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1115
17-03-17 18:13:33.558 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1115
17-03-17 18:13:33.558 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:13:33.558 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:13:33.558 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 18:13:33.738 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP 1308
17-03-17 18:13:33.748 -07 000000012 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:13:33.748 -07 000000610 INF: FPGA: 'CAMDBLSNAP 392 392 188 188 28408 150' command took 2 ms to send, 1310 ms to get response, and 1315 ms overall
17-03-17 18:13:33.748 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 18:13:33.748 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 15 at Y-position 70.68896484375, Z-Position -0.129233734251758. ------
17-03-17 18:13:33.748 -07 000000627 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:13:33.748 -07 000000512 INF: Y Motor: MoveYZ optimized starting. Moving Y to 71.5326 mm, moving Z to -0.13591 mm
17-03-17 18:13:33.748 -07 000000512 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:13:33.758 -07 000000012 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:13:33.758 -07 000000627 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 18:13:33.758 -07 000000415 INF: Z Motor: Entering MoveAbsStepped (DAC = 29689, sync = True, waitForSettling = False)
17-03-17 18:13:33.758 -07 000000415 INF: Z Motor: Moving to -0.135908 mm, started at -0.129234 mm, distance = -6.67 um
17-03-17 18:13:33.758 -07 000000626 INF: Y Motor: Entering MoveAbsStepped (target = 114452 steps, sync = True, waitForSettling = True)
17-03-17 18:13:33.758 -07 000000626 INF: Y Motor: Moving to 71.5326 mm, started at 70.6890 mm, delta = 0.8436 mm
17-03-17 18:13:33.758 -07 000000415 INF: FPGA: Xmit ZDACW 29689\n [Z Motor]
17-03-17 18:13:33.758 -07 000000012 INF: FPGA: Recv ZDACW
17-03-17 18:13:33.768 -07 000000415 INF: FPGA: 'ZDACW 29689' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:13:33.768 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:13:33.768 -07 000000012 INF: FPGA: Recv YRDPOS 144772
17-03-17 18:13:33.778 -07 000000627 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:13:33.778 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-17 18:13:33.778 -07 000000626 INF: Y Motor: Encoder = 144772 = motor step 113103.1 = 70.6895 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:13:33.778 -07 000000626 INF: Y Motor: Last commanded position = 70.7026 mm (113124.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:13:33.778 -07 000000626 INF: Y Motor: Moving 1349 steps-28
17-03-17 18:13:33.788 -07 000000415 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:13:33.788 -07 000000459 INF: FPGA: Recv ZDACR 29689
17-03-17 18:13:33.798 -07 000000415 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:13:33.798 -07 000000415 INF: Z Motor: MoveAbsStepped took 38 ms (did NOT wait for settling yet))
17-03-17 18:13:33.798 -07 000000626 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:13:33.958 -07 000000593 INF: Camera: sBCa_ReadImage(785074288, 1127551136, 0x0, 391868352) end. Duration was 406 ms.
17-03-17 18:13:33.958 -07 000000593 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-17 18:13:33.958 -07 000000593 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:13:33.968 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 408 ms.
17-03-17 18:13:33.968 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 408 ms.
17-03-17 18:13:33.968 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:13:33.968 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:13:33.968 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 9 ms.
17-03-17 18:13:33.968 -07 000000593 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 416 ms.
17-03-17 18:13:33.978 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 419 ms.
17-03-17 18:13:33.978 -07 000000459 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:13:33.978 -07 000000627 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 220 ms overall
17-03-17 18:13:34.178 -07 000000459 INF: FPGA: Recv YMVTILE
17-03-17 18:13:34.178 -07 000000626 INF: FPGA: 'YMVTILE 1327' command took 2 ms to send, 370 ms to get response, and 394 ms overall
17-03-17 18:13:34.208 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:13:34.208 -07 000000627 INF: FPGA: Recv YRDPOS 146472
17-03-17 18:13:34.218 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:13:34.218 -07 000000626 INF: Y Motor: Encoder = 146472 = motor step 114431.3 = 71.5195 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:13:34.218 -07 000000626 INF: Y Motor: Position error before settling (table move) = -27 encoder counts (-0.013 mm)
17-03-17 18:13:34.218 -07 000000626 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.844 mm, average velocity = 2.141 mm/sec
17-03-17 18:13:35.168 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:13:35.168 -07 000000627 INF: FPGA: Recv YRDPOS 146472
17-03-17 18:13:35.178 -07 000000626 INF: FPGA: 'YRDPOS' command took 1 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:13:35.178 -07 000000626 INF: Y Motor: Encoder = 146472 = motor step 114431.3 = 71.5195 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:13:35.188 -07 000000626 INF: Y Motor: After move to 71.532608, error = -0.013077, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:13:35.198 -07 000000626 INF: Y Motor: Position error after settling (table move) = -27 encoder counts (-0.013 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:13:35.198 -07 000000626 INF: Y Motor: Moved to 71.5195 after 1437 ms (table move)
17-03-17 18:13:35.198 -07 000000512 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135908 mm (DAC = 29689)
17-03-17 18:13:35.198 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:13:35.198 -07 000000618 INF: FPGA: Recv ZSGSRD 30429
17-03-17 18:13:35.208 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:13:35.208 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:13:35.208 -07 000000480 INF: FPGA: Recv ZSGSRD 30453
17-03-17 18:13:35.218 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:35.218 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:13:35.218 -07 000000627 INF: FPGA: Recv ZSGSRD 30448
17-03-17 18:13:35.228 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:35.228 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:13:35.228 -07 000000618 INF: FPGA: Recv ZSGSRD 30450
17-03-17 18:13:35.238 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:35.238 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:13:35.238 -07 000000480 INF: FPGA: Recv ZSGSRD 30446
17-03-17 18:13:35.248 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:35.248 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:13:35.248 -07 000000618 INF: FPGA: Recv ZSGSRD 30436
17-03-17 18:13:35.258 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:35.258 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:13:35.258 -07 000000618 INF: FPGA: Recv ZSGSRD 30444
17-03-17 18:13:35.268 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:35.268 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:13:35.268 -07 000000480 INF: FPGA: Recv ZSGSRD 30441
17-03-17 18:13:35.278 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:35.278 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:13:35.278 -07 000000502 INF: FPGA: Recv ZSGSRD 30450
17-03-17 18:13:35.288 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:35.288 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:13:35.288 -07 000000480 INF: FPGA: Recv ZSGSRD 30451
17-03-17 18:13:35.298 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:35.298 -07 000000512 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:13:35.298 -07 000000480 INF: FPGA: Recv ZPIEZORD 26339
17-03-17 18:13:35.308 -07 000000512 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:35.308 -07 000000512 INF: Z Motor: Piezo is near 36.3 V (nominally 0 to 100 V), expect near 45.3 V, since DAC is at 4.530 V. Piezo Error = -9.0 V.
17-03-17 18:13:35.308 -07 000000512 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.9 um, Read 10 ADC samples: Avg = 30445 (-135.1 uncal um), Error = 0.8 uncal um, Median = 30447 (-135.1 uncal um), StdDev = 8 (0.1 uncal um), Range = 24 (0.2 uncal um), Min = 30429 (-135.0 uncal um), Max = 30453 (-135.2 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 16 (0.1 uncal um)
17-03-17 18:13:35.308 -07 000000512 INF: Z Motor: ADC noise = 16, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30445, posNoise = 8, negNoise = 16
17-03-17 18:13:35.308 -07 000000512 INF: Z Motor: After move to -0.135908, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:13:35.308 -07 000000512 INF: Z Motor: Settle wait time = 1441 ms, measure time = 107 ms (allowed 150 ms), total time = 1548 ms
17-03-17 18:13:35.308 -07 000000512 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-17 18:13:35.358 -07 000000512 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1601 ms
17-03-17 18:13:35.358 -07 000000512 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:13:35.358 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:13:35.358 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:13:35.358 -07 000000627 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:13:35.358 -07 000000593 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:13:35.358 -07 000000415 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:13:35.358 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:13:35.358 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:13:35.358 -07 000000415 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:13:35.368 -07 000000415 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 5 ms.
17-03-17 18:13:35.368 -07 000000415 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:13:35.378 -07 000000415 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 18:13:35.378 -07 000000415 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 20 ms.
17-03-17 18:13:35.378 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:13:35.428 -07 000000424 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:13:35.628 -07 000000459 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:13:35.628 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:13:35.628 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:13:35.628 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1179848464, 0x0, 559484976) start.
17-03-17 18:13:35.658 -07 000000618 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 10, FrontChillerTemperature: 4.005817,
17-03-17 18:13:35.668 -07 000000618 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:13:35.668 -07 000000502 INF: FPGA: Recv CAMSNAP
17-03-17 18:13:35.668 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 283 ms to get response, and 284 ms overall
17-03-17 18:13:35.758 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1179848464, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 18:13:35.758 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:13:35.758 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-17 18:13:35.758 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms.
17-03-17 18:13:35.768 -07 000000459 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:13:35.768 -07 000000012 INF: Autofocus start
17-03-17 18:13:35.768 -07 000000012 INF: MeasureProfile start
17-03-17 18:13:35.768 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:13:35.778 -07 000000459 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:13:35.778 -07 000000459 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:13:35.778 -07 000000012 INF: MeasureProfile done
17-03-17 18:13:35.778 -07 000000012 INF: X=0  Z correction [um]=-0.02394831
17-03-17 18:13:35.778 -07 000000012 INF: Autofocus finished
17-03-17 18:13:35.978 -07 000000480 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:13:35.978 -07 000000459 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:13:35.978 -07 000000610 INF: ------------ Scan Snapping tile 15 at Y-position 71.51953125, Z-position -0.135908490667047. ----------
17-03-17 18:13:35.978 -07 000000610 INF: Cycle	10	Tile	15	Exposure Settings		A	392	G	188	T	188	C	392
17-03-17 18:13:35.988 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28197, sync = True, waitForSettling = True)
17-03-17 18:13:35.988 -07 000000610 INF: Z Motor: Moving to -0.129078 mm, started at -0.135908 mm, distance = 6.83 um
17-03-17 18:13:35.988 -07 000000610 INF: FPGA: Xmit ZDACW 28197\n [Z Motor]
17-03-17 18:13:35.988 -07 000000459 INF: FPGA: Recv ZDACW
17-03-17 18:13:35.998 -07 000000610 INF: FPGA: 'ZDACW 28197' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:13:35.998 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:13:35.998 -07 000000459 INF: FPGA: Recv ZDACR 28197
17-03-17 18:13:36.008 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:36.008 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:13:36.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:13:36.158 -07 000000480 INF: FPGA: Recv ZSGSRD 29377
17-03-17 18:13:36.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:36.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:13:36.168 -07 000000012 INF: FPGA: Recv ZSGSRD 29380
17-03-17 18:13:36.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:36.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:13:36.178 -07 000000618 INF: FPGA: Recv ZSGSRD 29379
17-03-17 18:13:36.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:36.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:13:36.188 -07 000000480 INF: FPGA: Recv ZSGSRD 29379
17-03-17 18:13:36.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:36.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:13:36.198 -07 000000618 INF: FPGA: Recv ZSGSRD 29385
17-03-17 18:13:36.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:36.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:13:36.208 -07 000000459 INF: FPGA: Recv ZSGSRD 29385
17-03-17 18:13:36.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:36.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:13:36.218 -07 000000618 INF: FPGA: Recv ZSGSRD 29381
17-03-17 18:13:36.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:36.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:13:36.228 -07 000000459 INF: FPGA: Recv ZSGSRD 29387
17-03-17 18:13:36.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:36.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:13:36.238 -07 000000459 INF: FPGA: Recv ZSGSRD 29385
17-03-17 18:13:36.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:36.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:13:36.248 -07 000000012 INF: FPGA: Recv ZSGSRD 29382
17-03-17 18:13:36.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:36.258 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:13:36.258 -07 000000480 INF: FPGA: Recv ZPIEZORD 24976
17-03-17 18:13:36.268 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:36.268 -07 000000610 INF: Z Motor: Piezo is near 33.4 V (nominally 0 to 100 V), expect near 43.0 V, since DAC is at 4.303 V. Piezo Error = -9.7 V.
17-03-17 18:13:36.268 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.1 um, Read 10 ADC samples: Avg = 29382 (-128.3 uncal um), Error = 0.8 uncal um, Median = 29382 (-128.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29377 (-128.3 uncal um), Max = 29387 (-128.3 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 18:13:36.268 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29382, posNoise = 5, negNoise = 5
17-03-17 18:13:36.268 -07 000000610 INF: Z Motor: After move to -0.129078, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:13:36.268 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 18:13:36.268 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:13:36.268 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:13:36.268 -07 000000012 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:13:36.268 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:13:36.268 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:13:36.268 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:13:36.268 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:13:36.268 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:13:36.268 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:13:36.268 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:13:36.268 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:13:36.278 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:13:36.278 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 18:13:36.278 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:13:36.278 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 18:13:36.278 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:13:36.288 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 18:13:36.288 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 24 ms.
17-03-17 18:13:36.298 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 18:13:36.298 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 25 ms.
17-03-17 18:13:36.298 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 392 392 188 188 28373 150\n [Camera]
17-03-17 18:13:36.498 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:13:36.568 -07 000000480 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:13:36.568 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 9. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=90, R2=99, Total=189. Warn if over 250 bubbles per interval.
17-03-17 18:13:36.888 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 584
17-03-17 18:13:36.888 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 584
17-03-17 18:13:36.888 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:13:36.888 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:13:36.888 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 1428998304, 0x0, 391868352) start.
17-03-17 18:13:36.898 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 584
17-03-17 18:13:36.898 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 584
17-03-17 18:13:36.898 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:13:36.898 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:13:36.898 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 1464420568, 0x0, 418435064) start.
17-03-17 18:13:37.078 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28373 777
17-03-17 18:13:37.228 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning grn on 927
17-03-17 18:13:37.278 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 1428998304, 0x0, 391868352) end. Duration was 389 ms.
17-03-17 18:13:37.278 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 18:13:37.278 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:13:37.288 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 1464420568, 0x0, 418435064) end. Duration was 387 ms.
17-03-17 18:13:37.288 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 18:13:37.288 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:13:37.288 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:13:37.288 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-17 18:13:37.288 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:13:37.298 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 18:13:37.418 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1115
17-03-17 18:13:37.418 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1115
17-03-17 18:13:37.418 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:13:37.418 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:13:37.418 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 18:13:37.428 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1115
17-03-17 18:13:37.428 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1115
17-03-17 18:13:37.428 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:13:37.428 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:13:37.428 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-17 18:13:37.608 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP 1307
17-03-17 18:13:37.608 -07 000000012 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:13:37.608 -07 000000610 INF: FPGA: 'CAMDBLSNAP 392 392 188 188 28373 150' command took 2 ms to send, 1309 ms to get response, and 1316 ms overall
17-03-17 18:13:37.618 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 18:13:37.618 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 16 at Y-position 71.51953125, Z-Position -0.129079553160355. ------
17-03-17 18:13:37.618 -07 000000551 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:13:37.618 -07 000000459 INF: Y Motor: MoveYZ optimized starting. Moving Y to 72.3626 mm, moving Z to -0.13511 mm
17-03-17 18:13:37.618 -07 000000459 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:13:37.618 -07 000000382 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:13:37.618 -07 000000502 INF: Y Motor: Entering MoveAbsStepped (target = 115780 steps, sync = True, waitForSettling = True)
17-03-17 18:13:37.618 -07 000000502 INF: Y Motor: Moving to 72.3626 mm, started at 71.5195 mm, delta = 0.8431 mm
17-03-17 18:13:37.618 -07 000000012 INF: Z Motor: Entering MoveAbsStepped (DAC = 29515, sync = True, waitForSettling = False)
17-03-17 18:13:37.618 -07 000000012 INF: Z Motor: Moving to -0.135111 mm, started at -0.129080 mm, distance = -6.03 um
17-03-17 18:13:37.628 -07 000000551 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 18:13:37.628 -07 000000012 INF: FPGA: Xmit ZDACW 29515\n [Z Motor]
17-03-17 18:13:37.738 -07 000000569 INF: FPGA: Recv ZDACW
17-03-17 18:13:37.748 -07 000000012 INF: FPGA: 'ZDACW 29515' command took 118 ms to send, 0 ms to get response, and 121 ms overall
17-03-17 18:13:37.748 -07 000000012 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:13:37.748 -07 000000382 INF: FPGA: Recv ZDACR 29515
17-03-17 18:13:37.758 -07 000000012 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:37.758 -07 000000012 INF: Z Motor: MoveAbsStepped took 131 ms (did NOT wait for settling yet))
17-03-17 18:13:37.758 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:13:37.758 -07 000000627 INF: FPGA: Recv YRDPOS 146473
17-03-17 18:13:37.768 -07 000000551 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:13:37.768 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 141 ms overall
17-03-17 18:13:37.768 -07 000000502 INF: Y Motor: Encoder = 146473 = motor step 114432.0 = 71.5200 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:13:37.768 -07 000000502 INF: Y Motor: Last commanded position = 71.5326 mm (114452.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:13:37.768 -07 000000502 INF: Y Motor: Moving 1348 steps-27
17-03-17 18:13:37.778 -07 000000502 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:13:37.808 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 384 ms.
17-03-17 18:13:37.808 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-17 18:13:37.808 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:13:37.808 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:13:37.818 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 392 ms.
17-03-17 18:13:37.818 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-17 18:13:37.818 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:13:37.818 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 18:13:37.818 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 18:13:37.818 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 18:13:37.968 -07 000000480 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:13:37.968 -07 000000551 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 224 ms overall
17-03-17 18:13:38.148 -07 000000486 INF: FPGA: Recv YMVTILE
17-03-17 18:13:38.148 -07 000000502 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 379 ms overall
17-03-17 18:13:38.188 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:13:38.188 -07 000000627 INF: FPGA: Recv YRDPOS 148173
17-03-17 18:13:38.198 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:13:38.198 -07 000000502 INF: Y Motor: Encoder = 148173 = motor step 115760.2 = 72.3501 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:13:38.198 -07 000000502 INF: Y Motor: Position error before settling (table move) = -26 encoder counts (-0.013 mm)
17-03-17 18:13:38.198 -07 000000502 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 379 ms, distance = 0.843 mm, average velocity = 2.224 mm/sec
17-03-17 18:13:39.148 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:13:39.148 -07 000000626 INF: FPGA: Recv YRDPOS 148173
17-03-17 18:13:39.158 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:13:39.158 -07 000000502 INF: Y Motor: Encoder = 148173 = motor step 115760.2 = 72.3501 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:13:39.178 -07 000000502 INF: Y Motor: After move to 72.362610, error = -0.012512, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:13:39.178 -07 000000502 INF: Y Motor: Position error after settling (table move) = -26 encoder counts (-0.013 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:13:39.178 -07 000000502 INF: Y Motor: Moved to 72.3501 after 1551 ms (table move)
17-03-17 18:13:39.178 -07 000000459 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135111 mm (DAC = 29515)
17-03-17 18:13:39.178 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:13:39.178 -07 000000501 INF: FPGA: Recv ZSGSRD 30327
17-03-17 18:13:39.188 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:13:39.188 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:13:39.188 -07 000000608 INF: FPGA: Recv ZSGSRD 30320
17-03-17 18:13:39.198 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:39.198 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:13:39.198 -07 000000541 INF: FPGA: Recv ZSGSRD 30324
17-03-17 18:13:39.208 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:39.208 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:13:39.208 -07 000000626 INF: FPGA: Recv ZSGSRD 30326
17-03-17 18:13:39.218 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:39.218 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:13:39.218 -07 000000501 INF: FPGA: Recv ZSGSRD 30324
17-03-17 18:13:39.228 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:39.228 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:13:39.228 -07 000000618 INF: FPGA: Recv ZSGSRD 30316
17-03-17 18:13:39.238 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:39.238 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:13:39.238 -07 000000486 INF: FPGA: Recv ZSGSRD 30329
17-03-17 18:13:39.248 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:39.248 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:13:39.248 -07 000000502 INF: FPGA: Recv ZSGSRD 30320
17-03-17 18:13:39.258 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:39.258 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:13:39.258 -07 000000501 INF: FPGA: Recv ZSGSRD 30321
17-03-17 18:13:39.268 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:39.268 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:13:39.268 -07 000000433 INF: FPGA: Recv ZSGSRD 30322
17-03-17 18:13:39.278 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:39.278 -07 000000459 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:13:39.278 -07 000000012 INF: FPGA: Recv ZPIEZORD 26202
17-03-17 18:13:39.288 -07 000000459 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:39.288 -07 000000459 INF: Z Motor: Piezo is near 36.0 V (nominally 0 to 100 V), expect near 45.0 V, since DAC is at 4.504 V. Piezo Error = -9.1 V.
17-03-17 18:13:39.288 -07 000000459 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.1 um, Read 10 ADC samples: Avg = 30323 (-134.3 uncal um), Error = 0.8 uncal um, Median = 30323 (-134.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 30316 (-134.3 uncal um), Max = 30329 (-134.4 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 18:13:39.288 -07 000000459 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30323, posNoise = 6, negNoise = 7
17-03-17 18:13:39.288 -07 000000459 INF: Z Motor: After move to -0.135111, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:13:39.288 -07 000000459 INF: Z Motor: Settle wait time = 1556 ms, measure time = 105 ms (allowed 150 ms), total time = 1661 ms
17-03-17 18:13:39.288 -07 000000459 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 18:13:39.338 -07 000000459 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1715 ms
17-03-17 18:13:39.338 -07 000000459 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:13:39.338 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:13:39.338 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:13:39.338 -07 000000433 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:13:39.338 -07 000000541 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:13:39.338 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:13:39.338 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:13:39.338 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:13:39.338 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:13:39.348 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:13:39.348 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:13:39.358 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-17 18:13:39.358 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-17 18:13:39.358 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:13:39.408 -07 000000627 INF: FPGA: Recv @CAMSNAP turning led on 41
17-03-17 18:13:39.608 -07 000000501 INF: FPGA: Recv @CAMSNAP img rdy 241
17-03-17 18:13:39.608 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 241
17-03-17 18:13:39.608 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:13:39.608 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 608668944, 0x0, 559484976) start.
17-03-17 18:13:39.638 -07 000000618 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:13:39.648 -07 000000012 INF: FPGA: Recv CAMSNAP
17-03-17 18:13:39.648 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 280 ms to get response, and 284 ms overall
17-03-17 18:13:39.738 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 608668944, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 18:13:39.738 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:13:39.738 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 18:13:39.738 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 18:13:39.748 -07 000000459 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:13:39.748 -07 000000569 INF: Autofocus start
17-03-17 18:13:39.748 -07 000000569 INF: MeasureProfile start
17-03-17 18:13:39.748 -07 000000627 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:13:39.758 -07 000000459 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:13:39.758 -07 000000459 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:13:39.758 -07 000000569 INF: MeasureProfile done
17-03-17 18:13:39.758 -07 000000569 INF: X=0  Z correction [um]=-0.02394831
17-03-17 18:13:39.758 -07 000000569 INF: Autofocus finished
17-03-17 18:13:39.958 -07 000000433 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:13:39.958 -07 000000459 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:13:39.958 -07 000000610 INF: ------------ Scan Snapping tile 16 at Y-position 72.35009765625, Z-position -0.135124736785753. ----------
17-03-17 18:13:39.958 -07 000000610 INF: Cycle	10	Tile	16	Exposure Settings		A	392	G	188	T	188	C	392
17-03-17 18:13:39.968 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28022, sync = True, waitForSettling = True)
17-03-17 18:13:39.968 -07 000000610 INF: Z Motor: Moving to -0.128276 mm, started at -0.135125 mm, distance = 6.85 um
17-03-17 18:13:39.968 -07 000000610 INF: FPGA: Xmit ZDACW 28022\n [Z Motor]
17-03-17 18:13:39.968 -07 000000541 INF: FPGA: Recv ZDACW
17-03-17 18:13:39.978 -07 000000610 INF: FPGA: 'ZDACW 28022' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:13:39.978 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:13:39.978 -07 000000541 INF: FPGA: Recv ZDACR 28022
17-03-17 18:13:39.988 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:39.988 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:13:40.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:13:40.138 -07 000000502 INF: FPGA: Recv ZSGSRD 29258
17-03-17 18:13:40.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:40.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:13:40.148 -07 000000433 INF: FPGA: Recv ZSGSRD 29262
17-03-17 18:13:40.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:40.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:13:40.158 -07 000000502 INF: FPGA: Recv ZSGSRD 29256
17-03-17 18:13:40.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:40.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:13:40.168 -07 000000502 INF: FPGA: Recv ZSGSRD 29253
17-03-17 18:13:40.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:40.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:13:40.178 -07 000000433 INF: FPGA: Recv ZSGSRD 29263
17-03-17 18:13:40.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:40.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:13:40.188 -07 000000502 INF: FPGA: Recv ZSGSRD 29260
17-03-17 18:13:40.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:40.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:13:40.198 -07 000000502 INF: FPGA: Recv ZSGSRD 29254
17-03-17 18:13:40.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:40.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:13:40.208 -07 000000433 INF: FPGA: Recv ZSGSRD 29258
17-03-17 18:13:40.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:40.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:13:40.218 -07 000000502 INF: FPGA: Recv ZSGSRD 29258
17-03-17 18:13:40.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:40.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:13:40.228 -07 000000502 INF: FPGA: Recv ZSGSRD 29262
17-03-17 18:13:40.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:40.238 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:13:40.238 -07 000000433 INF: FPGA: Recv ZPIEZORD 24801
17-03-17 18:13:40.248 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:40.248 -07 000000610 INF: Z Motor: Piezo is near 33.0 V (nominally 0 to 100 V), expect near 42.8 V, since DAC is at 4.276 V. Piezo Error = -9.8 V.
17-03-17 18:13:40.248 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.3 um, Read 10 ADC samples: Avg = 29258 (-127.5 uncal um), Error = 0.8 uncal um, Median = 29258 (-127.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29253 (-127.5 uncal um), Max = 29263 (-127.5 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 18:13:40.248 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29258, posNoise = 5, negNoise = 5
17-03-17 18:13:40.248 -07 000000610 INF: Z Motor: After move to -0.128276, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:13:40.248 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 18:13:40.248 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:13:40.248 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:13:40.248 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:13:40.248 -07 000000541 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:13:40.248 -07 000000433 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:13:40.248 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:13:40.248 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:13:40.248 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:13:40.248 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:13:40.248 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:13:40.248 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:13:40.248 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:13:40.258 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 18:13:40.258 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:13:40.258 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 18:13:40.258 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:13:40.268 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 18:13:40.268 -07 000000433 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 18:13:40.268 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms.
17-03-17 18:13:40.268 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 18:13:40.278 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 392 392 188 188 28199 150\n [Camera]
17-03-17 18:13:40.478 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:13:40.868 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 584
17-03-17 18:13:40.868 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 584
17-03-17 18:13:40.868 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:13:40.868 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 584
17-03-17 18:13:40.868 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 584
17-03-17 18:13:40.868 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:13:40.868 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:13:40.868 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-17 18:13:40.878 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:13:40.878 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 18:13:41.018 -07 000000502 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 10, FrontChillerTemperature: 3.979922,
17-03-17 18:13:41.058 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28199 777
17-03-17 18:13:41.208 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning grn on 927
17-03-17 18:13:41.268 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 395 ms.
17-03-17 18:13:41.268 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 18:13:41.268 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:13:41.268 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:13:41.268 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 18:13:41.268 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 393 ms.
17-03-17 18:13:41.268 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 18:13:41.268 -07 000000433 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:13:41.278 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:13:41.278 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-17 18:13:41.398 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1116
17-03-17 18:13:41.398 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1116
17-03-17 18:13:41.398 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:13:41.398 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1116
17-03-17 18:13:41.398 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1116
17-03-17 18:13:41.398 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:13:41.528 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:13:41.528 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-17 18:13:41.528 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:13:41.528 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-17 18:13:41.568 -07 000000608 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:13:41.568 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 9. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=90, R2=99, Total=189. Warn if over 250 bubbles per interval.
17-03-17 18:13:41.588 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP 1307
17-03-17 18:13:41.588 -07 000000502 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:13:41.588 -07 000000610 INF: FPGA: 'CAMDBLSNAP 392 392 188 188 28199 150' command took 2 ms to send, 1305 ms to get response, and 1314 ms overall
17-03-17 18:13:41.588 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 18:13:41.588 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 17 at Y-position 72.35009765625, Z-Position -0.128282950854777. ------
17-03-17 18:13:41.598 -07 000000608 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:13:41.598 -07 000000593 INF: Y Motor: MoveYZ optimized starting. Moving Y to 73.1926 mm, moving Z to -0.13492 mm
17-03-17 18:13:41.598 -07 000000593 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:13:41.598 -07 000000459 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:13:41.598 -07 000000502 INF: Y Motor: Entering MoveAbsStepped (target = 117108 steps, sync = True, waitForSettling = True)
17-03-17 18:13:41.598 -07 000000433 INF: Z Motor: Entering MoveAbsStepped (DAC = 29472, sync = True, waitForSettling = False)
17-03-17 18:13:41.598 -07 000000433 INF: Z Motor: Moving to -0.134914 mm, started at -0.128283 mm, distance = -6.63 um
17-03-17 18:13:41.598 -07 000000502 INF: Y Motor: Moving to 73.1926 mm, started at 72.3501 mm, delta = 0.8425 mm
17-03-17 18:13:41.608 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:13:41.608 -07 000000608 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:41.608 -07 000000424 INF: FPGA: Recv YRDPOS 148174
17-03-17 18:13:41.618 -07 000000433 INF: FPGA: Xmit ZDACW 29472\n [Z Motor]
17-03-17 18:13:41.618 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-17 18:13:41.618 -07 000000502 INF: Y Motor: Encoder = 148174 = motor step 115760.9 = 72.3506 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:13:41.618 -07 000000541 INF: FPGA: Recv ZDACW
17-03-17 18:13:41.618 -07 000000502 INF: Y Motor: Last commanded position = 72.3626 mm (115780.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:13:41.618 -07 000000502 INF: Y Motor: Moving 1347 steps-26
17-03-17 18:13:41.628 -07 000000608 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:13:41.628 -07 000000433 INF: FPGA: 'ZDACW 29472' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-17 18:13:41.638 -07 000000502 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:13:41.648 -07 000000433 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:13:41.648 -07 000000626 INF: FPGA: Recv ZDACR 29472
17-03-17 18:13:41.658 -07 000000433 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:13:41.658 -07 000000433 INF: Z Motor: MoveAbsStepped took 55 ms (did NOT wait for settling yet))
17-03-17 18:13:41.828 -07 000000459 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:13:41.828 -07 000000608 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 18:13:41.898 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 372 ms.
17-03-17 18:13:41.898 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 372 ms.
17-03-17 18:13:41.898 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:13:41.898 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:13:41.898 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 376 ms.
17-03-17 18:13:41.898 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 18:13:41.908 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:13:41.908 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:13:41.908 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 508 ms.
17-03-17 18:13:41.908 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 506 ms.
17-03-17 18:13:42.008 -07 000000459 INF: FPGA: Recv YMVTILE
17-03-17 18:13:42.008 -07 000000502 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 391 ms overall
17-03-17 18:13:42.068 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:13:42.068 -07 000000424 INF: FPGA: Recv YRDPOS 149866
17-03-17 18:13:42.078 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:13:42.078 -07 000000502 INF: Y Motor: Encoder = 149866 = motor step 117082.8 = 73.1768 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:13:42.078 -07 000000502 INF: Y Motor: Position error before settling (table move) = -32 encoder counts (-0.016 mm)
17-03-17 18:13:42.078 -07 000000502 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 391 ms, distance = 0.843 mm, average velocity = 2.155 mm/sec
17-03-17 18:13:43.028 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:13:43.028 -07 000000459 INF: FPGA: Recv YRDPOS 149866
17-03-17 18:13:43.038 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:13:43.038 -07 000000502 INF: Y Motor: Encoder = 149866 = motor step 117082.8 = 73.1768 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:13:43.058 -07 000000502 INF: Y Motor: After move to 73.192604, error = -0.015846, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:13:43.058 -07 000000502 INF: Y Motor: Position error after settling (table move) = -32 encoder counts (-0.016 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:13:43.058 -07 000000502 INF: Y Motor: Moved to 73.1768 after 1455 ms (table move)
17-03-17 18:13:43.058 -07 000000593 INF: Z Motor: EndOfMoveAbsStepped: target = -0.134914 mm (DAC = 29472)
17-03-17 18:13:43.058 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:13:43.058 -07 000000502 INF: FPGA: Recv ZSGSRD 30304
17-03-17 18:13:43.068 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:13:43.068 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:13:43.068 -07 000000502 INF: FPGA: Recv ZSGSRD 30290
17-03-17 18:13:43.078 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:43.078 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:13:43.078 -07 000000415 INF: FPGA: Recv ZSGSRD 30292
17-03-17 18:13:43.088 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:43.088 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:13:43.088 -07 000000608 INF: FPGA: Recv ZSGSRD 30297
17-03-17 18:13:43.098 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:43.098 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:13:43.098 -07 000000608 INF: FPGA: Recv ZSGSRD 30299
17-03-17 18:13:43.108 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:43.108 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:13:43.108 -07 000000608 INF: FPGA: Recv ZSGSRD 30289
17-03-17 18:13:43.118 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:43.118 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:13:43.118 -07 000000512 INF: FPGA: Recv ZSGSRD 30293
17-03-17 18:13:43.128 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:43.128 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:13:43.128 -07 000000424 INF: FPGA: Recv ZSGSRD 30286
17-03-17 18:13:43.138 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:43.138 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:13:43.138 -07 000000608 INF: FPGA: Recv ZSGSRD 30291
17-03-17 18:13:43.148 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:43.148 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:13:43.748 -07 000000569 INF: FPGA: Recv ZSGSRD 30291
17-03-17 18:13:43.748 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 590 ms to get response, and 600 ms overall
17-03-17 18:13:43.748 -07 000000593 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:13:43.748 -07 000000433 INF: FPGA: Recv ZPIEZORD 26198
17-03-17 18:13:43.758 -07 000000593 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:43.758 -07 000000593 INF: Z Motor: Piezo is near 36.0 V (nominally 0 to 100 V), expect near 45.0 V, since DAC is at 4.497 V. Piezo Error = -9.0 V.
17-03-17 18:13:43.758 -07 000000593 INF: Z Motor: ReadAdcAverage: Commanded Z = -134.9 um, Read 10 ADC samples: Avg = 30293 (-134.1 uncal um), Error = 0.8 uncal um, Median = 30292 (-134.1 uncal um), StdDev = 5 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 30286 (-134.1 uncal um), Max = 30304 (-134.2 uncal um), Pos Noise = 11 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 18:13:43.758 -07 000000593 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30293, posNoise = 11, negNoise = 7
17-03-17 18:13:43.758 -07 000000593 INF: Z Motor: After move to -0.134914, error = -0.000018, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:13:43.758 -07 000000593 INF: Z Motor: Settle wait time = 1458 ms, measure time = 697 ms (allowed 150 ms), total time = 2155 ms
17-03-17 18:13:43.758 -07 000000593 INF: Z Motor: Warning: Actual position measuring time = 697 ms, longer than max expected time of 150 ms
17-03-17 18:13:43.758 -07 000000593 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2159 ms
17-03-17 18:13:43.758 -07 000000593 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:13:43.758 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:13:43.758 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:13:43.758 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:13:43.758 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:13:43.758 -07 000000459 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:13:43.758 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:13:43.758 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 18:13:43.758 -07 000000459 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:13:43.768 -07 000000459 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:13:43.768 -07 000000459 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:13:43.778 -07 000000459 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 18:13:43.778 -07 000000459 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-17 18:13:43.778 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:13:43.828 -07 000000541 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:13:44.028 -07 000000541 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:13:44.028 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:13:44.028 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:13:44.028 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2432798312, 0x0, 559484976) start.
17-03-17 18:13:44.068 -07 000000626 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:13:44.068 -07 000000415 INF: FPGA: Recv CAMSNAP
17-03-17 18:13:44.068 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 281 ms to get response, and 285 ms overall
17-03-17 18:13:44.148 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2432798312, 0x0, 559484976) end. Duration was 120 ms.
17-03-17 18:13:44.148 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:13:44.148 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 18:13:44.148 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 123 ms.
17-03-17 18:13:44.168 -07 000000593 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:13:44.168 -07 000000415 INF: Autofocus start
17-03-17 18:13:44.168 -07 000000415 INF: MeasureProfile start
17-03-17 18:13:44.168 -07 000000541 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:13:44.178 -07 000000593 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 18:13:44.178 -07 000000593 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:13:44.178 -07 000000415 INF: MeasureProfile done
17-03-17 18:13:44.178 -07 000000415 INF: X=0  Z correction [um]=-0.02394831
17-03-17 18:13:44.188 -07 000000415 INF: Autofocus finished
17-03-17 18:13:44.378 -07 000000512 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:13:44.378 -07 000000593 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:13:44.378 -07 000000610 INF: ------------ Scan Snapping tile 17 at Y-position 73.1767578125, Z-position -0.1349320104215. ----------
17-03-17 18:13:44.378 -07 000000610 INF: Cycle	10	Tile	17	Exposure Settings		A	392	G	188	T	188	C	392
17-03-17 18:13:44.388 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27980, sync = True, waitForSettling = True)
17-03-17 18:13:44.388 -07 000000610 INF: Z Motor: Moving to -0.128084 mm, started at -0.134932 mm, distance = 6.85 um
17-03-17 18:13:44.388 -07 000000610 INF: FPGA: Xmit ZDACW 27980\n [Z Motor]
17-03-17 18:13:44.388 -07 000000626 INF: FPGA: Recv ZDACW
17-03-17 18:13:44.398 -07 000000610 INF: FPGA: 'ZDACW 27980' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:13:44.398 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:13:44.398 -07 000000626 INF: FPGA: Recv ZDACR 27980
17-03-17 18:13:44.408 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:44.408 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:13:44.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:13:44.558 -07 000000626 INF: FPGA: Recv ZSGSRD 29230
17-03-17 18:13:44.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:13:44.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:13:44.568 -07 000000569 INF: FPGA: Recv ZSGSRD 29230
17-03-17 18:13:44.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:44.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:13:44.578 -07 000000626 INF: FPGA: Recv ZSGSRD 29231
17-03-17 18:13:44.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:44.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:13:44.588 -07 000000626 INF: FPGA: Recv ZSGSRD 29227
17-03-17 18:13:44.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:44.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:13:44.598 -07 000000541 INF: FPGA: Recv ZSGSRD 29228
17-03-17 18:13:44.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:44.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:13:44.608 -07 000000626 INF: FPGA: Recv ZSGSRD 29223
17-03-17 18:13:44.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:44.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:13:44.618 -07 000000626 INF: FPGA: Recv ZSGSRD 29231
17-03-17 18:13:44.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:44.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:13:44.628 -07 000000626 INF: FPGA: Recv ZSGSRD 29230
17-03-17 18:13:44.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:44.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:13:44.638 -07 000000626 INF: FPGA: Recv ZSGSRD 29227
17-03-17 18:13:44.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:44.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:13:44.648 -07 000000626 INF: FPGA: Recv ZSGSRD 29224
17-03-17 18:13:44.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:44.658 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:13:44.658 -07 000000626 INF: FPGA: Recv ZPIEZORD 24794
17-03-17 18:13:44.668 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:44.668 -07 000000610 INF: Z Motor: Piezo is near 33.0 V (nominally 0 to 100 V), expect near 42.7 V, since DAC is at 4.269 V. Piezo Error = -9.7 V.
17-03-17 18:13:44.668 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.1 um, Read 10 ADC samples: Avg = 29228 (-127.3 uncal um), Error = 0.8 uncal um, Median = 29229 (-127.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 29223 (-127.3 uncal um), Max = 29231 (-127.3 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 18:13:44.668 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29228, posNoise = 3, negNoise = 5
17-03-17 18:13:44.668 -07 000000610 INF: Z Motor: After move to -0.128084, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:13:44.668 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 18:13:44.668 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:13:44.668 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:13:44.668 -07 000000593 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:13:44.668 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:13:44.668 -07 000000433 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:13:44.668 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:13:44.668 -07 000000608 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:13:44.668 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:13:44.668 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 18:13:44.668 -07 000000593 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:13:44.668 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:13:44.668 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:13:44.678 -07 000000593 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 18:13:44.678 -07 000000593 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:13:44.678 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 18:13:44.678 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:13:44.688 -07 000000593 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 18:13:44.688 -07 000000593 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 18:13:44.688 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 18:13:44.688 -07 000000608 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 18:13:44.698 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 392 392 188 188 28156 150\n [Camera]
17-03-17 18:13:44.898 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:13:45.288 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 584
17-03-17 18:13:45.288 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 584
17-03-17 18:13:45.288 -07 000000593 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:13:45.288 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 584
17-03-17 18:13:45.288 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 584
17-03-17 18:13:45.288 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:13:45.288 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:13:45.288 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 18:13:45.288 -07 000000593 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:13:45.288 -07 000000593 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 18:13:45.478 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28156 777
17-03-17 18:13:45.628 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP turning grn on 927
17-03-17 18:13:45.668 -07 000000593 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 373 ms.
17-03-17 18:13:45.668 -07 000000593 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 374 ms.
17-03-17 18:13:45.668 -07 000000593 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:13:45.668 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 18:13:45.668 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 18:13:45.668 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:13:45.668 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 18:13:45.668 -07 000000593 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 18:13:45.668 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:13:45.678 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 18:13:45.818 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1115
17-03-17 18:13:45.818 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1115
17-03-17 18:13:45.818 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:13:45.818 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:13:45.818 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 2468220576, 0x0, 391868352) start.
17-03-17 18:13:45.818 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1115
17-03-17 18:13:45.818 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1115
17-03-17 18:13:45.818 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:13:45.818 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:13:45.818 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2503642840, 0x0, 418435064) start.
17-03-17 18:13:46.008 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP 1308
17-03-17 18:13:46.008 -07 000000626 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:13:46.008 -07 000000610 INF: FPGA: 'CAMDBLSNAP 392 392 188 188 28156 150' command took 2 ms to send, 1306 ms to get response, and 1314 ms overall
17-03-17 18:13:46.008 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 18:13:46.008 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 18 at Y-position 73.1767578125, Z-Position -0.128090224490524. ------
17-03-17 18:13:46.018 -07 000000433 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:13:46.018 -07 000000541 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.0226 mm, moving Z to -0.13447 mm
17-03-17 18:13:46.018 -07 000000541 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:13:46.018 -07 000000593 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:13:46.018 -07 000000512 INF: Z Motor: Entering MoveAbsStepped (DAC = 29376, sync = True, waitForSettling = False)
17-03-17 18:13:46.018 -07 000000512 INF: Z Motor: Moving to -0.134475 mm, started at -0.128090 mm, distance = -6.38 um
17-03-17 18:13:46.018 -07 000000459 INF: Y Motor: Entering MoveAbsStepped (target = 118436 steps, sync = True, waitForSettling = True)
17-03-17 18:13:46.018 -07 000000459 INF: Y Motor: Moving to 74.0226 mm, started at 73.1768 mm, delta = 0.8458 mm
17-03-17 18:13:46.028 -07 000000433 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:46.028 -07 000000459 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:13:46.028 -07 000000626 INF: FPGA: Recv YRDPOS 149866
17-03-17 18:13:46.038 -07 000000459 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 18:13:46.038 -07 000000459 INF: Y Motor: Encoder = 149866 = motor step 117082.8 = 73.1768 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:13:46.038 -07 000000459 INF: Y Motor: Last commanded position = 73.1926 mm (117108.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:13:46.038 -07 000000459 INF: Y Motor: Moving 1353 steps-32
17-03-17 18:13:46.038 -07 000000512 INF: FPGA: Xmit ZDACW 29376\n [Z Motor]
17-03-17 18:13:46.038 -07 000000593 INF: FPGA: Recv ZDACW
17-03-17 18:13:46.048 -07 000000433 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:13:46.048 -07 000000512 INF: FPGA: 'ZDACW 29376' command took 0 ms to send, 0 ms to get response, and 21 ms overall
17-03-17 18:13:46.058 -07 000000459 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:13:46.068 -07 000000512 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:13:46.068 -07 000000593 INF: FPGA: Recv ZDACR 29376
17-03-17 18:13:46.078 -07 000000512 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:13:46.078 -07 000000512 INF: Z Motor: MoveAbsStepped took 51 ms (did NOT wait for settling yet))
17-03-17 18:13:46.198 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 2468220576, 0x0, 391868352) end. Duration was 380 ms.
17-03-17 18:13:46.198 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 18:13:46.198 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:13:46.198 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2503642840, 0x0, 418435064) end. Duration was 378 ms.
17-03-17 18:13:46.198 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-17 18:13:46.198 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:13:46.208 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:13:46.208 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 18:13:46.208 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 18:13:46.208 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 18:13:46.248 -07 000000593 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:13:46.248 -07 000000433 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 18:13:46.398 -07 000000608 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 10, FrontChillerTemperature: 3.985358,
17-03-17 18:13:46.428 -07 000000569 INF: FPGA: Recv YMVTILE
17-03-17 18:13:46.428 -07 000000459 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 18:13:46.458 -07 000000459 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:13:46.458 -07 000000593 INF: FPGA: Recv YRDPOS 151569
17-03-17 18:13:46.468 -07 000000459 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 18:13:46.468 -07 000000459 INF: Y Motor: Encoder = 151569 = motor step 118413.3 = 74.0083 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:13:46.468 -07 000000459 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-17 18:13:46.468 -07 000000459 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.846 mm, average velocity = 2.125 mm/sec
17-03-17 18:13:46.568 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:13:46.568 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 9. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=90, R2=99, Total=189. Warn if over 250 bubbles per interval.
17-03-17 18:13:47.418 -07 000000459 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:13:47.418 -07 000000424 INF: FPGA: Recv YRDPOS 151570
17-03-17 18:13:47.428 -07 000000459 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:13:47.428 -07 000000459 INF: Y Motor: Encoder = 151570 = motor step 118414.1 = 74.0088 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:13:47.438 -07 000000459 INF: Y Motor: After move to 74.022606, error = -0.013817, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:13:47.438 -07 000000459 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 18:13:47.438 -07 000000459 INF: Y Motor: Moved to 74.0088 after 1416 ms (table move)
17-03-17 18:13:47.438 -07 000000541 INF: Z Motor: EndOfMoveAbsStepped: target = -0.134475 mm (DAC = 29376)
17-03-17 18:13:47.438 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:13:47.448 -07 000000626 INF: FPGA: Recv ZSGSRD 30220
17-03-17 18:13:47.448 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 18:13:47.448 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:13:47.448 -07 000000424 INF: FPGA: Recv ZSGSRD 30230
17-03-17 18:13:47.458 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:13:47.458 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:13:47.458 -07 000000433 INF: FPGA: Recv ZSGSRD 30222
17-03-17 18:13:47.468 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:47.468 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:13:47.468 -07 000000415 INF: FPGA: Recv ZSGSRD 30220
17-03-17 18:13:47.478 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:47.478 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:13:47.478 -07 000000424 INF: FPGA: Recv ZSGSRD 30219
17-03-17 18:13:47.488 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:47.488 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:13:47.488 -07 000000415 INF: FPGA: Recv ZSGSRD 30228
17-03-17 18:13:47.498 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:47.498 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:13:47.498 -07 000000459 INF: FPGA: Recv ZSGSRD 30229
17-03-17 18:13:47.508 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:47.508 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:13:47.508 -07 000000415 INF: FPGA: Recv ZSGSRD 30219
17-03-17 18:13:47.518 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:47.518 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:13:47.518 -07 000000593 INF: FPGA: Recv ZSGSRD 30222
17-03-17 18:13:47.528 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:47.528 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:13:47.528 -07 000000512 INF: FPGA: Recv ZSGSRD 30218
17-03-17 18:13:47.538 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:47.538 -07 000000541 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:13:47.538 -07 000000415 INF: FPGA: Recv ZPIEZORD 26119
17-03-17 18:13:47.548 -07 000000541 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:47.548 -07 000000541 INF: Z Motor: Piezo is near 35.8 V (nominally 0 to 100 V), expect near 44.8 V, since DAC is at 4.482 V. Piezo Error = -9.0 V.
17-03-17 18:13:47.548 -07 000000541 INF: Z Motor: ReadAdcAverage: Commanded Z = -134.5 um, Read 10 ADC samples: Avg = 30223 (-133.7 uncal um), Error = 0.8 uncal um, Median = 30221 (-133.7 uncal um), StdDev = 5 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 30218 (-133.7 uncal um), Max = 30230 (-133.7 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 18:13:47.548 -07 000000541 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30223, posNoise = 7, negNoise = 5
17-03-17 18:13:47.548 -07 000000541 INF: Z Motor: After move to -0.134475, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:13:47.548 -07 000000541 INF: Z Motor: Settle wait time = 1420 ms, measure time = 102 ms (allowed 150 ms), total time = 1522 ms
17-03-17 18:13:47.548 -07 000000541 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 18:13:47.598 -07 000000541 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1577 ms
17-03-17 18:13:47.598 -07 000000541 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:13:47.598 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:13:47.598 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:13:47.598 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:13:47.598 -07 000000415 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:13:47.598 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:13:47.598 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:13:47.598 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 18:13:47.598 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:13:47.608 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:13:47.608 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:13:47.608 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 18:13:47.608 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-17 18:13:47.618 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:13:47.658 -07 000000608 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:13:47.858 -07 000000424 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:13:47.858 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:13:47.858 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:13:47.868 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2539065104, 0x0, 559484976) start.
17-03-17 18:13:47.898 -07 000000433 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:13:47.898 -07 000000424 INF: FPGA: Recv CAMSNAP
17-03-17 18:13:47.898 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 279 ms to get response, and 285 ms overall
17-03-17 18:13:47.988 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2539065104, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 18:13:47.988 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:13:47.988 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 18:13:47.988 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 18:13:48.098 -07 000000459 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:13:48.098 -07 000000593 INF: Autofocus start
17-03-17 18:13:48.098 -07 000000593 INF: MeasureProfile start
17-03-17 18:13:48.098 -07 000000626 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:13:48.108 -07 000000459 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:13:48.108 -07 000000459 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:13:48.108 -07 000000593 INF: MeasureProfile done
17-03-17 18:13:48.108 -07 000000593 INF: X=23  Z correction [um]=0.08669062
17-03-17 18:13:48.108 -07 000000593 INF: Autofocus finished
17-03-17 18:13:48.308 -07 000000424 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:13:48.308 -07 000000459 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:13:48.308 -07 000000610 INF: ------------ Scan Snapping tile 18 at Y-position 74.0087890625, Z-position -0.134482315571576. ----------
17-03-17 18:13:48.308 -07 000000610 INF: Cycle	10	Tile	18	Exposure Settings		A	392	G	188	T	188	C	392
17-03-17 18:13:48.318 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27907, sync = True, waitForSettling = True)
17-03-17 18:13:48.318 -07 000000610 INF: Z Motor: Moving to -0.127750 mm, started at -0.134482 mm, distance = 6.73 um
17-03-17 18:13:48.318 -07 000000610 INF: FPGA: Xmit ZDACW 27907\n [Z Motor]
17-03-17 18:13:48.318 -07 000000541 INF: FPGA: Recv ZDACW
17-03-17 18:13:48.328 -07 000000610 INF: FPGA: 'ZDACW 27907' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:48.328 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:13:48.328 -07 000000626 INF: FPGA: Recv ZDACR 27907
17-03-17 18:13:48.338 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:48.338 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:13:48.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:13:48.488 -07 000000626 INF: FPGA: Recv ZSGSRD 29175
17-03-17 18:13:48.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:13:48.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:13:48.498 -07 000000541 INF: FPGA: Recv ZSGSRD 29182
17-03-17 18:13:48.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:48.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:13:48.508 -07 000000541 INF: FPGA: Recv ZSGSRD 29180
17-03-17 18:13:48.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:48.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:13:48.518 -07 000000012 INF: FPGA: Recv ZSGSRD 29175
17-03-17 18:13:48.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:48.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:13:48.528 -07 000000433 INF: FPGA: Recv ZSGSRD 29176
17-03-17 18:13:48.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:48.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:13:48.538 -07 000000626 INF: FPGA: Recv ZSGSRD 29174
17-03-17 18:13:48.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:48.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:13:48.548 -07 000000593 INF: FPGA: Recv ZSGSRD 29178
17-03-17 18:13:48.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:48.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:13:48.558 -07 000000012 INF: FPGA: Recv ZSGSRD 29181
17-03-17 18:13:48.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:48.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:13:48.568 -07 000000459 INF: FPGA: Recv ZSGSRD 29177
17-03-17 18:13:48.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:48.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:13:48.578 -07 000000626 INF: FPGA: Recv ZSGSRD 29181
17-03-17 18:13:48.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:48.588 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:13:48.588 -07 000000512 INF: FPGA: Recv ZPIEZORD 24716
17-03-17 18:13:48.598 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:48.598 -07 000000610 INF: Z Motor: Piezo is near 32.8 V (nominally 0 to 100 V), expect near 42.6 V, since DAC is at 4.258 V. Piezo Error = -9.8 V.
17-03-17 18:13:48.598 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -127.8 um, Read 10 ADC samples: Avg = 29178 (-127.0 uncal um), Error = 0.8 uncal um, Median = 29178 (-127.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 29174 (-127.0 uncal um), Max = 29182 (-127.0 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 18:13:48.598 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29178, posNoise = 4, negNoise = 4
17-03-17 18:13:48.598 -07 000000610 INF: Z Motor: After move to -0.127750, error = -0.000019, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:13:48.598 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 18:13:48.598 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:13:48.598 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:13:48.598 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:13:48.598 -07 000000433 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:13:48.598 -07 000000459 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:13:48.598 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:13:48.598 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:13:48.598 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:13:48.598 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:13:48.598 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:13:48.598 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:13:48.598 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:13:48.608 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 18:13:48.608 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:13:48.608 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 18:13:48.608 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:13:48.618 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 18:13:48.618 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 18:13:48.618 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 18:13:48.618 -07 000000459 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 18:13:48.618 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 392 392 188 188 28084 150\n [Camera]
17-03-17 18:13:48.818 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:13:49.218 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 584
17-03-17 18:13:49.218 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 584
17-03-17 18:13:49.218 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:13:49.218 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:13:49.218 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 1056706608, 0x0, 391868352) start.
17-03-17 18:13:49.218 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 584
17-03-17 18:13:49.218 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 584
17-03-17 18:13:49.218 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:13:49.218 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:13:49.218 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 1092128872, 0x0, 418435064) start.
17-03-17 18:13:49.408 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28084 777
17-03-17 18:13:49.558 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning grn on 927
17-03-17 18:13:49.608 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 1056706608, 0x0, 391868352) end. Duration was 396 ms.
17-03-17 18:13:49.608 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 18:13:49.608 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:13:49.618 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 1092128872, 0x0, 418435064) end. Duration was 396 ms.
17-03-17 18:13:49.618 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 18:13:49.618 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:13:49.618 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:13:49.618 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 18:13:49.618 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:13:49.628 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 407 ms.
17-03-17 18:13:49.748 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1115
17-03-17 18:13:49.748 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1115
17-03-17 18:13:49.748 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:13:49.868 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1115
17-03-17 18:13:49.868 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1115
17-03-17 18:13:49.868 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:13:49.868 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:13:49.868 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 1127551136, 0x0, 391868352) start.
17-03-17 18:13:49.878 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:13:49.878 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1056706608, 0x0, 418435064) start.
17-03-17 18:13:49.938 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP 1308
17-03-17 18:13:49.938 -07 000000541 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:13:49.938 -07 000000610 INF: FPGA: 'CAMDBLSNAP 392 392 188 188 28084 150' command took 2 ms to send, 1304 ms to get response, and 1315 ms overall
17-03-17 18:13:49.938 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 18:13:49.938 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 19 at Y-position 74.0087890625, Z-Position -0.127769013883436. ------
17-03-17 18:13:49.938 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:13:49.938 -07 000000608 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.8526 mm, moving Z to -0.13409 mm
17-03-17 18:13:49.938 -07 000000608 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:13:49.948 -07 000000459 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:13:49.948 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 18:13:49.948 -07 000000626 INF: Z Motor: Entering MoveAbsStepped (DAC = 29293, sync = True, waitForSettling = False)
17-03-17 18:13:49.948 -07 000000626 INF: Z Motor: Moving to -0.134095 mm, started at -0.127769 mm, distance = -6.33 um
17-03-17 18:13:49.948 -07 000000424 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:13:49.948 -07 000000593 INF: Y Motor: Entering MoveAbsStepped (target = 119764 steps, sync = True, waitForSettling = True)
17-03-17 18:13:49.948 -07 000000593 INF: Y Motor: Moving to 74.8526 mm, started at 74.0088 mm, delta = 0.8438 mm
17-03-17 18:13:49.958 -07 000000593 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:13:49.958 -07 000000459 INF: FPGA: Recv YRDPOS 151570
17-03-17 18:13:49.968 -07 000000593 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-17 18:13:49.968 -07 000000593 INF: Y Motor: Encoder = 151570 = motor step 118414.1 = 74.0088 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:13:49.968 -07 000000593 INF: Y Motor: Last commanded position = 74.0226 mm (118436.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:13:49.968 -07 000000593 INF: Y Motor: Moving 1350 steps-29
17-03-17 18:13:49.968 -07 000000626 INF: FPGA: Xmit ZDACW 29293\n [Z Motor]
17-03-17 18:13:49.968 -07 000000459 INF: FPGA: Recv ZDACW
17-03-17 18:13:49.978 -07 000000626 INF: FPGA: 'ZDACW 29293' command took 3 ms to send, 0 ms to get response, and 26 ms overall
17-03-17 18:13:49.978 -07 000000626 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:13:49.978 -07 000000433 INF: FPGA: Recv ZDACR 29293
17-03-17 18:13:49.988 -07 000000626 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:13:49.988 -07 000000626 INF: Z Motor: MoveAbsStepped took 37 ms (did NOT wait for settling yet))
17-03-17 18:13:49.988 -07 000000593 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:13:50.148 -07 000000626 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:13:50.148 -07 000000424 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 195 ms to get response, and 202 ms overall
17-03-17 18:13:50.268 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 1127551136, 0x0, 391868352) end. Duration was 395 ms.
17-03-17 18:13:50.268 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 18:13:50.268 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:13:50.268 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:13:50.268 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 520 ms.
17-03-17 18:13:50.268 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1056706608, 0x0, 418435064) end. Duration was 392 ms.
17-03-17 18:13:50.268 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 18:13:50.268 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:13:50.268 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:13:50.278 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-17 18:13:50.358 -07 000000459 INF: FPGA: Recv YMVTILE
17-03-17 18:13:50.358 -07 000000593 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 395 ms overall
17-03-17 18:13:50.388 -07 000000593 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:13:50.388 -07 000000512 INF: FPGA: Recv YRDPOS 153257
17-03-17 18:13:50.398 -07 000000593 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:13:50.398 -07 000000593 INF: Y Motor: Encoder = 153257 = motor step 119732.0 = 74.8325 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:13:50.398 -07 000000593 INF: Y Motor: Position error before settling (table move) = -41 encoder counts (-0.020 mm)
17-03-17 18:13:50.398 -07 000000593 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 395 ms, distance = 0.844 mm, average velocity = 2.136 mm/sec
17-03-17 18:13:51.348 -07 000000593 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:13:51.348 -07 000000459 INF: FPGA: Recv YRDPOS 153258
17-03-17 18:13:51.358 -07 000000593 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:13:51.358 -07 000000593 INF: Y Motor: Encoder = 153258 = motor step 119732.8 = 74.8330 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:13:51.368 -07 000000593 INF: Y Motor: After move to 74.852608, error = -0.019600, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:13:51.368 -07 000000593 INF: Y Motor: Position error after settling (table move) = -40 encoder counts (-0.020 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 18:13:51.368 -07 000000593 INF: Y Motor: Moved to 74.8330 after 1421 ms (table move)
17-03-17 18:13:51.368 -07 000000608 INF: Z Motor: EndOfMoveAbsStepped: target = -0.134095 mm (DAC = 29293)
17-03-17 18:13:51.368 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:13:51.378 -07 000000512 INF: FPGA: Recv ZSGSRD 30160
17-03-17 18:13:51.378 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 18:13:51.378 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:13:51.378 -07 000000593 INF: FPGA: Recv ZSGSRD 30171
17-03-17 18:13:51.388 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:51.388 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:13:51.388 -07 000000501 INF: FPGA: Recv ZSGSRD 30156
17-03-17 18:13:51.398 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:51.398 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:13:51.398 -07 000000433 INF: FPGA: Recv ZSGSRD 30165
17-03-17 18:13:51.408 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:51.408 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:13:51.408 -07 000000512 INF: FPGA: Recv ZSGSRD 30155
17-03-17 18:13:51.418 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:51.418 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:13:51.418 -07 000000433 INF: FPGA: Recv ZSGSRD 30167
17-03-17 18:13:51.428 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:51.428 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:13:51.428 -07 000000501 INF: FPGA: Recv ZSGSRD 30168
17-03-17 18:13:51.438 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:51.448 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:13:51.448 -07 000000512 INF: FPGA: Recv ZSGSRD 30169
17-03-17 18:13:51.458 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 18:13:51.458 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:13:51.458 -07 000000433 INF: FPGA: Recv ZSGSRD 30162
17-03-17 18:13:51.468 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:51.468 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:13:51.468 -07 000000501 INF: FPGA: Recv ZSGSRD 30163
17-03-17 18:13:51.478 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:13:51.478 -07 000000608 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:13:51.478 -07 000000593 INF: FPGA: Recv ZPIEZORD 26043
17-03-17 18:13:51.488 -07 000000608 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:51.488 -07 000000608 INF: Z Motor: Piezo is near 35.6 V (nominally 0 to 100 V), expect near 44.7 V, since DAC is at 4.470 V. Piezo Error = -9.1 V.
17-03-17 18:13:51.488 -07 000000608 INF: Z Motor: ReadAdcAverage: Commanded Z = -134.1 um, Read 10 ADC samples: Avg = 30164 (-133.3 uncal um), Error = 0.8 uncal um, Median = 30164 (-133.3 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 30155 (-133.3 uncal um), Max = 30171 (-133.4 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 18:13:51.488 -07 000000608 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30164, posNoise = 7, negNoise = 9
17-03-17 18:13:51.488 -07 000000608 INF: Z Motor: After move to -0.134095, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:13:51.488 -07 000000608 INF: Z Motor: Settle wait time = 1424 ms, measure time = 113 ms (allowed 150 ms), total time = 1537 ms
17-03-17 18:13:51.488 -07 000000608 INF: Z Motor: Waiting extra 37 ms after reading position to reach expected total of 150 ms
17-03-17 18:13:51.528 -07 000000608 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1580 ms
17-03-17 18:13:51.528 -07 000000608 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:13:51.528 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:13:51.528 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:13:51.528 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:13:51.528 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:13:51.528 -07 000000512 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:13:51.528 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:13:51.528 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 18:13:51.528 -07 000000512 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:13:51.538 -07 000000512 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:13:51.538 -07 000000512 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:13:51.548 -07 000000512 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-17 18:13:51.548 -07 000000512 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-17 18:13:51.548 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:13:51.568 -07 000000608 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:13:51.568 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 9. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=90, R2=99, Total=189. Warn if over 250 bubbles per interval.
17-03-17 18:13:51.598 -07 000000501 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:13:51.758 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 10, FrontChillerTemperature: 3.986717,
17-03-17 18:13:51.798 -07 000000433 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:13:51.798 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:13:51.798 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:13:51.798 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1092128872, 0x0, 559484976) start.
17-03-17 18:13:51.838 -07 000000459 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:13:51.838 -07 000000424 INF: FPGA: Recv CAMSNAP
17-03-17 18:13:51.838 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 2 ms to send, 281 ms to get response, and 284 ms overall
17-03-17 18:13:51.918 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1092128872, 0x0, 559484976) end. Duration was 125 ms.
17-03-17 18:13:51.918 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:13:51.928 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 18:13:51.928 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 18:13:51.938 -07 000000424 INF: Autofocus start
17-03-17 18:13:51.938 -07 000000424 INF: MeasureProfile start
17-03-17 18:13:51.948 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:13:51.948 -07 000000459 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:13:51.948 -07 000000424 INF: MeasureProfile done
17-03-17 18:13:51.948 -07 000000424 INF: X=-16  Z correction [um]=-0.08128808
17-03-17 18:13:51.948 -07 000000424 INF: Autofocus finished
17-03-17 18:13:51.958 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-17 18:13:51.958 -07 000000626 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:13:52.158 -07 000000618 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:13:52.158 -07 000000626 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 192 ms to get response, and 202 ms overall
17-03-17 18:13:52.158 -07 000000610 INF: ------------ Scan Snapping tile 19 at Y-position 74.8330078125, Z-position -0.134103287055213. ----------
17-03-17 18:13:52.158 -07 000000610 INF: Cycle	10	Tile	19	Exposure Settings		A	392	G	188	T	188	C	392
17-03-17 18:13:52.158 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27787, sync = True, waitForSettling = True)
17-03-17 18:13:52.168 -07 000000610 INF: Z Motor: Moving to -0.127201 mm, started at -0.134103 mm, distance = 6.90 um
17-03-17 18:13:52.168 -07 000000610 INF: FPGA: Xmit ZDACW 27787\n [Z Motor]
17-03-17 18:13:52.168 -07 000000512 INF: FPGA: Recv ZDACW
17-03-17 18:13:52.178 -07 000000610 INF: FPGA: 'ZDACW 27787' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:13:52.178 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:13:52.178 -07 000000459 INF: FPGA: Recv ZDACR 27787
17-03-17 18:13:52.188 -07 000000610 INF: FPGA: 'ZDACR' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:52.188 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:13:52.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:13:52.338 -07 000000627 INF: FPGA: Recv ZSGSRD 29090
17-03-17 18:13:52.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:13:52.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:13:52.348 -07 000000626 INF: FPGA: Recv ZSGSRD 29090
17-03-17 18:13:52.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:52.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:13:52.358 -07 000000502 INF: FPGA: Recv ZSGSRD 29087
17-03-17 18:13:52.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:52.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:13:52.368 -07 000000480 INF: FPGA: Recv ZSGSRD 29089
17-03-17 18:13:52.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:52.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:13:52.378 -07 000000593 INF: FPGA: Recv ZSGSRD 29088
17-03-17 18:13:52.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:52.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:13:52.388 -07 000000512 INF: FPGA: Recv ZSGSRD 29092
17-03-17 18:13:52.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:52.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:13:52.398 -07 000000501 INF: FPGA: Recv ZSGSRD 29087
17-03-17 18:13:52.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:52.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:13:52.408 -07 000000459 INF: FPGA: Recv ZSGSRD 29083
17-03-17 18:13:52.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:52.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:13:52.418 -07 000000486 INF: FPGA: Recv ZSGSRD 29099
17-03-17 18:13:52.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:52.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:13:52.428 -07 000000433 INF: FPGA: Recv ZSGSRD 29090
17-03-17 18:13:52.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:52.438 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:13:52.438 -07 000000608 INF: FPGA: Recv ZPIEZORD 24645
17-03-17 18:13:52.448 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:52.448 -07 000000610 INF: Z Motor: Piezo is near 32.6 V (nominally 0 to 100 V), expect near 42.4 V, since DAC is at 4.240 V. Piezo Error = -9.8 V.
17-03-17 18:13:52.448 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -127.2 um, Read 10 ADC samples: Avg = 29090 (-126.4 uncal um), Error = 0.8 uncal um, Median = 29090 (-126.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 29083 (-126.4 uncal um), Max = 29099 (-126.5 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 18:13:52.448 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29090, posNoise = 9, negNoise = 7
17-03-17 18:13:52.448 -07 000000610 INF: Z Motor: After move to -0.127201, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:13:52.448 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 18:13:52.448 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:13:52.448 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:13:52.448 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:13:52.448 -07 000000551 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:13:52.448 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:13:52.448 -07 000000627 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:13:52.448 -07 000000593 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:13:52.448 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:13:52.448 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 18:13:52.448 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:13:52.448 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 18:13:52.448 -07 000000593 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:13:52.458 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 18:13:52.458 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:13:52.458 -07 000000593 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 18:13:52.458 -07 000000593 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:13:52.468 -07 000000593 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 18:13:52.468 -07 000000593 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 18:13:52.468 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 18:13:52.468 -07 000000551 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 18:13:52.468 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 392 392 188 188 27964 150\n [Camera]
17-03-17 18:13:52.668 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:13:53.068 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 584
17-03-17 18:13:53.068 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 584
17-03-17 18:13:53.068 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:13:53.068 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:13:53.068 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 18:13:53.068 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 584
17-03-17 18:13:53.068 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 584
17-03-17 18:13:53.068 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:13:53.068 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:13:53.068 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 2468220576, 0x0, 418435064) start.
17-03-17 18:13:53.258 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 27964 777
17-03-17 18:13:53.408 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP turning grn on 929
17-03-17 18:13:53.468 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 399 ms.
17-03-17 18:13:53.468 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 18:13:53.468 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:13:53.468 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 2468220576, 0x0, 418435064) end. Duration was 398 ms.
17-03-17 18:13:53.468 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 18:13:53.468 -07 000000593 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:13:53.468 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:13:53.468 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-17 18:13:53.468 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:13:53.478 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-17 18:13:53.598 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1115
17-03-17 18:13:53.598 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1115
17-03-17 18:13:53.598 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:13:53.708 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1115
17-03-17 18:13:53.708 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1115
17-03-17 18:13:53.708 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:13:53.708 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:13:53.708 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:13:53.708 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 1056706608, 0x0, 418435064) start.
17-03-17 18:13:53.708 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-17 18:13:53.788 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP 1307
17-03-17 18:13:53.788 -07 000000618 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:13:53.788 -07 000000610 INF: FPGA: 'CAMDBLSNAP 392 392 188 188 27964 150' command took 2 ms to send, 1303 ms to get response, and 1314 ms overall
17-03-17 18:13:54.088 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 1056706608, 0x0, 418435064) end. Duration was 380 ms.
17-03-17 18:13:54.088 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-17 18:13:54.088 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:13:54.098 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:13:54.098 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 384 ms.
17-03-17 18:13:54.098 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 18:13:54.098 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:13:54.098 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:13:54.098 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 504 ms.
17-03-17 18:13:54.098 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) start.
17-03-17 18:13:54.108 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-17 18:13:54.138 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) end. Duration was 41 ms.
17-03-17 18:13:54.138 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) start.
17-03-17 18:13:54.188 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) end. Duration was 41 ms.
17-03-17 18:13:54.218 -07 000000610 INF: Enabling Skipping AutoFocus in the next 1 cycles.
17-03-17 18:13:54.218 -07 000000610 INF: Imaging Cycle 10: ScanTilesCommand Cycle 10 time end. Duration was 162756 ms.
17-03-17 18:13:54.218 -07 000000610 INF: =================== Cycle #10 ===================
17-03-17 18:13:54.218 -07 000000610 INF: ===================  ===================
17-03-17 18:13:54.218 -07 000000618 INF: FPGA: Xmit EXLED1ADCR\n [GreenLED]
17-03-17 18:13:54.228 -07 000000424 INF: FPGA: Recv EXLED1ADCR 28
17-03-17 18:13:54.228 -07 000000618 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 18:13:54.228 -07 000000618 INF: GreenLED: Using Green data: Photodiode ADC 28 --> 0.0 mW (old method), or 2.1 mW (new method). Difference = 2.1 mW
17-03-17 18:13:54.228 -07 000000618 INF: Predictive Diagnostic Log Cycle Entry Metrics: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 10, FrontChillerTemperature: 3.986717, FrontChillerHeatSinkTemperature: 0.405666, AmbientTemperature: 18.72717, FlowCellCompartmentTemperature: 21.9911, FlowCellTargetTemperature: 22, FlowCellHeatSinkTemperature: 18.47057, GreenLEDSensorTemperature: 26.05179, PhotodiodePowerAdcGreen: 28, PhotodiodePowerMwGreen: 2.10942
17-03-17 18:13:54.228 -07 000000610 INF: Y-Drift Offset assigned 0.002126916.