17-03-18 03:26:58.164 -07 000000610 INF: =================== Cycle #113 ===================
17-03-18 03:26:58.164 -07 000000610 INF: Y Motor: Entering MoveAbsStepped (target = 120609 steps, sync = True, waitForSettling = True)
17-03-18 03:26:58.164 -07 000000610 INF: Y Motor: Moving to 75.3806 mm, started at 74.8315 mm, delta = 0.5490 mm
17-03-18 03:26:58.184 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:26:58.184 -07 000000561 INF: FPGA: Recv YRDPOS 153255
17-03-18 03:26:58.194 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-18 03:26:58.194 -07 000000610 INF: Y Motor: Encoder = 153255 = motor step 119730.5 = 74.8315 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:26:58.194 -07 000000610 INF: Y Motor: Last commanded position = 74.8526 mm (119764.2 steps), delta from last commanded position = 0.5280 mm (844.8 steps). UsingTableMove = False
17-03-18 03:26:58.194 -07 000000610 INF: Y Motor: Moving to 154379 encoder counts
17-03-18 03:26:58.194 -07 000000610 INF: FPGA: Xmit YMVTO 154379\n [Y Motor]
17-03-18 03:26:58.304 -07 000000576 INF: FPGA: Recv YMVTO 154377 878
17-03-18 03:26:58.304 -07 000000610 INF: FPGA: 'YMVTO 154379' command took 0 ms to send, 107 ms to get response, and 117 ms overall
17-03-18 03:26:58.304 -07 000000610 INF: Y Motor: Position error before settling = -2 encoder counts (-0.001 mm)
17-03-18 03:26:58.304 -07 000000610 INF: Y Motor: To move from 74.832 to 75.381 (0.549 mm) should take 878 steps, but required 878 steps (0.549 mm). Slippage = 0.000 mm (0.00%).
17-03-18 03:26:58.304 -07 000000610 INF: Y Motor: FPGA move command 'YMVTO 154379' took 117 ms, distance = 0.549 mm, average velocity = 4.693 mm/sec
17-03-18 03:26:59.164 -07 000000430 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 113, FrontChillerTemperature: 3.979922,
17-03-18 03:27:01.304 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:27:01.304 -07 000000561 INF: FPGA: Recv YRDPOS 154386
17-03-18 03:27:01.314 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:27:01.314 -07 000000610 INF: Y Motor: Encoder = 154386 = motor step 120614.1 = 75.3838 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:27:01.334 -07 000000610 INF: Y Motor: After move to 75.380580, error = 0.003209, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 03:27:01.334 -07 000000610 INF: Y Motor: Position error after settling = 7 encoder counts (0.003 mm), Delta during settling = 9 counts (0.004 mm)
17-03-18 03:27:01.334 -07 000000610 INF: Y Motor: Moved to 75.3838 after 3169 ms
17-03-18 03:27:01.344 -07 000000610 INF: =================== Cycle #113, Flow Cell Temp 60° ===================
17-03-18 03:27:01.344 -07 000000610 INF: =================== Cycle #113, Flow Cell Temp 60°, FC temperature to 60° ===================
17-03-18 03:27:01.344 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 60000000\n [FlowCellTempControl]
17-03-18 03:27:01.344 -07 000000606 INF: FPGA: Recv TEC2TEMP 
17-03-18 03:27:01.354 -07 000000610 INF: FPGA: 'TEC2TEMP 0 60000000' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:27:01.354 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-18 03:27:01.354 -07 000000629 INF: FPGA: Recv TEC2EN 
17-03-18 03:27:01.364 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:27:01.364 -07 000000610 INF: =================== Cycle #113, Flow Cell Temp 60° ===================
17-03-18 03:27:01.364 -07 000000610 INF: =================== Cycle #113 ===================
17-03-18 03:27:01.364 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-18 03:27:01.364 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 03:27:01.394 -07 000000610 INF: ReagentValve: Recv 18\r
17-03-18 03:27:01.394 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 24 to 3. Moving 3 positions.
17-03-18 03:27:01.394 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-18 03:27:01.574 -07 000000576 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 03:27:01.574 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 112. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1630, R2=1698, Total=3328. Warn if over 250 bubbles per interval.
17-03-18 03:27:01.694 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 03:27:01.714 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-18 03:27:01.714 -07 000000610 INF: ReagentValve: Move+ from 24 to 3 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-18 03:27:01.764 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 03:27:01.784 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 03:27:01.784 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 03:27:01.884 -07 000000610 INF: =================== Cycle #113, Pumping Reagent PR2 (3) ===================
17-03-18 03:27:01.884 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1
17-03-18 03:27:01.884 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 03:27:01.914 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-18 03:27:01.914 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-18 03:27:01.914 -07 000000610 INF: =================== Cycle #113, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 03:27:02.044 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r
17-03-18 03:27:02.084 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 03:27:04.524 -07 000000629 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 113, FrontChillerTemperature: 4.003063,
17-03-18 03:27:05.214 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 03:27:05.244 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 03:27:05.664 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 03:27:05.694 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 03:27:06.114 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 03:27:06.144 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 03:27:06.144 -07 000000610 INF: LanePump: Waited 4059 ms for pump motion to complete
17-03-18 03:27:06.144 -07 000000610 INF: =================== Cycle #113, Pumping Reagent PR2 (3) ===================
17-03-18 03:27:06.274 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 03:27:06.304 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 03:27:06.304 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 03:27:06.434 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 03:27:06.464 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 03:27:06.464 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 03:27:06.464 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 03:27:06.574 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 1
17-03-18 03:27:06.574 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 112. Bubbles during last 5000 ms interval: R1=1, R2=1, Total=2. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1631, R2=1699, Total=3330. Warn if over 250 bubbles per interval.
17-03-18 03:27:06.594 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 03:27:06.624 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 03:27:07.054 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 03:27:07.084 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 03:27:07.084 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 03:27:07.084 -07 000000610 INF: =================== Cycle #113 ===================
17-03-18 03:27:08.304 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-18 03:27:08.304 -07 000000610 INF: ReagentValve: Go to position 4 - PumpToFlowcell start
17-03-18 03:27:08.304 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 03:27:08.324 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 03:27:08.324 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 3 to 4. Moving 1 positions.
17-03-18 03:27:08.324 -07 000000610 INF: ReagentValve: Xmit +04\r
17-03-18 03:27:08.454 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 03:27:08.474 -07 000000610 INF: ReagentValve: Recv 00CD\r
17-03-18 03:27:08.474 -07 000000610 INF: ReagentValve: Move+ from 3 to 4 took 205 steps, expected 204. Error = 1 steps (0.5%)
17-03-18 03:27:08.524 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 03:27:08.544 -07 000000610 INF: ReagentValve: Recv 04\r
17-03-18 03:27:08.544 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 03:27:08.644 -07 000000610 INF: =================== Cycle #113, Pumping Reagent CMS (4) ===================
17-03-18 03:27:08.644 -07 000000610 INF: LanePump: Pumping from 4, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-18 03:27:08.644 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 03:27:08.674 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 03:27:08.674 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 03:27:08.674 -07 000000610 INF: =================== Cycle #113, Pumping Reagent CMS (4), Aspirating port InputPort ===================
17-03-18 03:27:08.804 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-18 03:27:08.844 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 03:27:09.884 -07 000000618 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 113, FrontChillerTemperature: 4.015368,
17-03-18 03:27:10.284 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 03:27:10.314 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 03:27:10.734 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 03:27:10.764 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 03:27:10.764 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-18 03:27:10.764 -07 000000610 INF: =================== Cycle #113, Pumping Reagent CMS (4) ===================
17-03-18 03:27:10.894 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 03:27:10.924 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 03:27:10.924 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 03:27:11.054 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 03:27:11.084 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 03:27:11.084 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 03:27:11.084 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 03:27:11.214 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 03:27:11.244 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 03:27:11.574 -07 000000424 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 03:27:11.574 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 112. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1631, R2=1699, Total=3330. Warn if over 250 bubbles per interval.
17-03-18 03:27:11.674 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 03:27:11.704 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 03:27:11.704 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-18 03:27:11.704 -07 000000610 INF: =================== Cycle #113 ===================
17-03-18 03:27:12.924 -07 000000610 INF: AsyncDelayTimer waited 1218ms
17-03-18 03:27:12.924 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-18 03:27:12.924 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 03:27:12.944 -07 000000610 INF: ReagentValve: Recv 04\r
17-03-18 03:27:12.944 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 4 to 3. Moving 1 positions.
17-03-18 03:27:12.944 -07 000000610 INF: ReagentValve: Xmit -03\r
17-03-18 03:27:13.094 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 03:27:13.114 -07 000000610 INF: ReagentValve: Recv 00E1\r
17-03-18 03:27:13.114 -07 000000610 INF: ReagentValve: Move- from 4 to 3 took 225 steps, expected 204. Error = 21 steps (10.3%)
17-03-18 03:27:13.164 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 03:27:13.184 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 03:27:13.184 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 03:27:13.284 -07 000000610 INF: =================== Cycle #113, Pumping Reagent PR2 (3) ===================
17-03-18 03:27:13.284 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-18 03:27:13.284 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 03:27:13.314 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 03:27:13.314 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 03:27:13.314 -07 000000610 INF: =================== Cycle #113, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 03:27:13.444 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-18 03:27:13.484 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 03:27:14.354 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 03:27:14.384 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 03:27:14.384 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-18 03:27:14.384 -07 000000610 INF: =================== Cycle #113, Pumping Reagent PR2 (3) ===================
17-03-18 03:27:14.514 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 03:27:14.544 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 03:27:14.544 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-18 03:27:14.674 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 03:27:14.704 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 03:27:14.704 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-18 03:27:14.704 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 03:27:14.834 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 03:27:14.864 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 03:27:15.244 -07 000000461 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 113, FrontChillerTemperature: 4.028963,
17-03-18 03:27:15.294 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 03:27:15.324 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 03:27:15.324 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-18 03:27:15.324 -07 000000610 INF: =================== Cycle #113 ===================
17-03-18 03:27:15.324 -07 000000467 INF: WaitCommand(10000) start
17-03-18 03:27:15.324 -07 000000461 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 03:27:15.324 -07 000000461 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-18 03:27:16.544 -07 000000461 INF: AsyncDelayTimer waited 1216ms
17-03-18 03:27:16.544 -07 000000461 INF: LanePump: Xmit /1?\r
17-03-18 03:27:16.574 -07 000000461 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 03:27:16.574 -07 000000461 INF: LanePump: Current Position of Pump is: 1110
17-03-18 03:27:16.574 -07 000000569 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 03:27:16.574 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 112. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1631, R2=1699, Total=3330. Warn if over 250 bubbles per interval.
17-03-18 03:27:16.704 -07 000000461 INF: LanePump: Xmit /1V1500OA0R\r
17-03-18 03:27:16.744 -07 000000461 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 03:27:18.274 -07 000000461 INF: LanePump: Xmit /1Q\r
17-03-18 03:27:18.304 -07 000000461 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 03:27:18.724 -07 000000461 INF: LanePump: Xmit /1Q\r
17-03-18 03:27:18.754 -07 000000461 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 03:27:18.754 -07 000000461 INF: LanePump: Waited 2009 ms for pump motion to complete
17-03-18 03:27:18.754 -07 000000461 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 03:27:18.754 -07 000000461 INF: ===================  ===================
17-03-18 03:27:20.604 -07 000000618 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 113, FrontChillerTemperature: 4.049392,
17-03-18 03:27:21.574 -07 000000455 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 03:27:21.574 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 112. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1631, R2=1699, Total=3330. Warn if over 250 bubbles per interval.
17-03-18 03:27:25.334 -07 000000467 INF: WaitCommand(10000) end
17-03-18 03:27:25.334 -07 000000610 INF: =================== Cycle #113, Pumping Reagent PR2 (3) ===================
17-03-18 03:27:25.334 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 250 µL, calling command Pumping to Flow Cell #1
17-03-18 03:27:25.334 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 03:27:25.374 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-18 03:27:25.374 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-18 03:27:25.374 -07 000000610 INF: =================== Cycle #113, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 03:27:25.504 -07 000000610 INF: LanePump: Xmit /1V400IP1500R\r
17-03-18 03:27:25.544 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 03:27:25.964 -07 000000430 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 113, FrontChillerTemperature: 4.011254,
17-03-18 03:27:26.574 -07 000000591 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 03:27:26.574 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 112. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1631, R2=1699, Total=3330. Warn if over 250 bubbles per interval.
17-03-18 03:27:31.324 -07 000000455 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 113, FrontChillerTemperature: 4.003063,
17-03-18 03:27:31.574 -07 000000430 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 03:27:31.574 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 112. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1631, R2=1699, Total=3330. Warn if over 250 bubbles per interval.
17-03-18 03:27:31.674 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 03:27:31.704 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 03:27:32.124 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 03:27:32.154 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 03:27:32.574 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 03:27:32.604 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 03:27:33.024 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 03:27:33.054 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 03:27:33.474 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 03:27:33.504 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 03:27:33.504 -07 000000610 INF: LanePump: Waited 7959 ms for pump motion to complete
17-03-18 03:27:33.504 -07 000000610 INF: =================== Cycle #113, Pumping Reagent PR2 (3) ===================
17-03-18 03:27:33.634 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 03:27:33.664 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-18 03:27:33.664 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-18 03:27:33.794 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 03:27:33.824 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-18 03:27:33.824 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-18 03:27:33.824 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 03:27:33.954 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 03:27:33.984 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 03:27:34.414 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 03:27:34.444 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 03:27:34.444 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 03:27:34.444 -07 000000610 INF: =================== Cycle #113 ===================
17-03-18 03:27:35.664 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-18 03:27:35.664 -07 000000610 INF: ReagentValve: Go to position 1 - PumpToFlowcell start
17-03-18 03:27:35.664 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 03:27:35.684 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 03:27:35.684 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 1. Moving 2 positions.
17-03-18 03:27:35.684 -07 000000610 INF: ReagentValve: Xmit -01\r
17-03-18 03:27:35.894 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 03:27:35.914 -07 000000610 INF: ReagentValve: Recv 0198\r
17-03-18 03:27:35.914 -07 000000610 INF: ReagentValve: Move- from 3 to 1 took 408 steps, expected 408. Error = 0 steps (0.0%)
17-03-18 03:27:35.964 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 03:27:35.984 -07 000000610 INF: ReagentValve: Recv 01\r
17-03-18 03:27:35.984 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 03:27:36.084 -07 000000610 INF: =================== Cycle #113, Pumping Reagent IMT (1) ===================
17-03-18 03:27:36.084 -07 000000610 INF: LanePump: Pumping from 1, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-18 03:27:36.084 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 03:27:36.114 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-18 03:27:36.114 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-18 03:27:36.114 -07 000000610 INF: =================== Cycle #113, Pumping Reagent IMT (1), Aspirating port InputPort ===================
17-03-18 03:27:36.244 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-18 03:27:36.284 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 03:27:36.574 -07 000000455 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 03:27:36.574 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 112. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1631, R2=1699, Total=3330. Warn if over 250 bubbles per interval.
17-03-18 03:27:36.684 -07 000000462 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 113, FrontChillerTemperature: 4.011254,
17-03-18 03:27:37.724 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 03:27:37.754 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 03:27:38.174 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 03:27:38.204 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 03:27:38.204 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-18 03:27:38.204 -07 000000610 INF: =================== Cycle #113, Pumping Reagent IMT (1) ===================
17-03-18 03:27:38.334 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 03:27:38.364 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-18 03:27:38.364 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-18 03:27:38.494 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 03:27:38.524 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-18 03:27:38.524 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-18 03:27:38.524 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 03:27:38.654 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 03:27:38.684 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 03:27:39.114 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 03:27:39.144 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 03:27:39.144 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-18 03:27:39.144 -07 000000610 INF: =================== Cycle #113 ===================
17-03-18 03:27:40.364 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-18 03:27:40.364 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-18 03:27:40.364 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 03:27:40.384 -07 000000610 INF: ReagentValve: Recv 01\r
17-03-18 03:27:40.384 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 1 to 3. Moving 2 positions.
17-03-18 03:27:40.384 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-18 03:27:40.614 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 03:27:40.634 -07 000000610 INF: ReagentValve: Recv 01AC\r
17-03-18 03:27:40.634 -07 000000610 INF: ReagentValve: Move+ from 1 to 3 took 428 steps, expected 408. Error = 20 steps (4.9%)
17-03-18 03:27:40.684 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 03:27:40.704 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 03:27:40.704 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 03:27:40.804 -07 000000610 INF: =================== Cycle #113, Pumping Reagent PR2 (3) ===================
17-03-18 03:27:40.804 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-18 03:27:40.804 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 03:27:40.834 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-18 03:27:40.834 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-18 03:27:40.834 -07 000000610 INF: =================== Cycle #113, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 03:27:40.964 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-18 03:27:41.004 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 03:27:41.574 -07 000000618 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 2 R1 3
17-03-18 03:27:41.574 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 112. Bubbles during last 5000 ms interval: R1=3, R2=2, Total=5. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1634, R2=1701, Total=3335. Warn if over 250 bubbles per interval.
17-03-18 03:27:41.874 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 03:27:41.904 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 03:27:41.904 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-18 03:27:41.904 -07 000000610 INF: =================== Cycle #113, Pumping Reagent PR2 (3) ===================
17-03-18 03:27:42.034 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 03:27:42.044 -07 000000590 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 113, FrontChillerTemperature: 4.001704,
17-03-18 03:27:42.064 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-18 03:27:42.064 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-18 03:27:42.194 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 03:27:42.224 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-18 03:27:42.224 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-18 03:27:42.224 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 03:27:42.354 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 03:27:42.384 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 03:27:42.814 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 03:27:42.844 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 03:27:42.844 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 03:27:42.844 -07 000000610 INF: =================== Cycle #113 ===================
17-03-18 03:27:42.844 -07 000000610 INF: =================== Cycle #113, Flow Cell Temp 65° ===================
17-03-18 03:27:42.844 -07 000000610 INF: =================== Cycle #113, Flow Cell Temp 65°, FC temperature to 65° ===================
17-03-18 03:27:42.844 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 65000000\n [FlowCellTempControl]
17-03-18 03:27:42.844 -07 000000461 INF: FPGA: Recv TEC2TEMP 
17-03-18 03:27:42.854 -07 000000610 INF: FPGA: 'TEC2TEMP 0 65000000' command took 1 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 03:27:42.854 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-18 03:27:42.854 -07 000000467 INF: FPGA: Recv TEC2EN 
17-03-18 03:27:42.864 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:27:42.864 -07 000000610 INF: =================== Cycle #113, Flow Cell Temp 65° ===================
17-03-18 03:27:42.864 -07 000000610 INF: =================== Cycle #113 ===================
17-03-18 03:27:42.864 -07 000000610 INF: WaitCommand(30000) start
17-03-18 03:27:46.574 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 3 R1 1
17-03-18 03:27:46.574 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 112. Bubbles during last 5000 ms interval: R1=1, R2=3, Total=4. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1635, R2=1704, Total=3339. Warn if over 250 bubbles per interval.
17-03-18 03:27:47.404 -07 000000430 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 113, FrontChillerTemperature: 3.989471,
17-03-18 03:27:51.574 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 03:27:51.574 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 112. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1635, R2=1704, Total=3339. Warn if over 250 bubbles per interval.
17-03-18 03:27:52.764 -07 000000590 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 113, FrontChillerTemperature: 4.001704,
17-03-18 03:27:56.574 -07 000000424 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 0
17-03-18 03:27:56.574 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 112. Bubbles during last 5000 ms interval: R1=0, R2=1, Total=1. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1635, R2=1705, Total=3340. Warn if over 250 bubbles per interval.
17-03-18 03:27:58.124 -07 000000606 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 113, FrontChillerTemperature: 3.994908,
17-03-18 03:28:01.574 -07 000000606 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 03:28:01.574 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 112. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1635, R2=1705, Total=3340. Warn if over 250 bubbles per interval.
17-03-18 03:28:03.484 -07 000000591 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 113, FrontChillerTemperature: 4.014009,
17-03-18 03:28:06.574 -07 000000424 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 03:28:06.574 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 112. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1635, R2=1705, Total=3340. Warn if over 250 bubbles per interval.
17-03-18 03:28:08.844 -07 000000590 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 113, FrontChillerTemperature: 3.98264,
17-03-18 03:28:11.574 -07 000000455 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 03:28:11.574 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 112. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1635, R2=1705, Total=3340. Warn if over 250 bubbles per interval.
17-03-18 03:28:12.874 -07 000000610 INF: WaitCommand(30000) end
17-03-18 03:28:12.874 -07 000000610 INF: =================== Cycle #113, Pumping Reagent PR2 (3) ===================
17-03-18 03:28:12.874 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 5 µL, calling command Pumping to Flow Cell #1
17-03-18 03:28:12.974 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 03:28:13.004 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-18 03:28:13.004 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-18 03:28:13.004 -07 000000610 INF: =================== Cycle #113, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 03:28:13.134 -07 000000610 INF: LanePump: Xmit /1V400IP30R\r
17-03-18 03:28:13.174 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 03:28:13.714 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 03:28:13.744 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 03:28:13.744 -07 000000610 INF: LanePump: Waited 571 ms for pump motion to complete
17-03-18 03:28:13.744 -07 000000610 INF: =================== Cycle #113, Pumping Reagent PR2 (3) ===================
17-03-18 03:28:13.874 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 03:28:13.904 -07 000000610 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-18 03:28:13.904 -07 000000610 INF: LanePump: Current Position of Pump is: 1920
17-03-18 03:28:14.034 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 03:28:14.064 -07 000000610 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-18 03:28:14.064 -07 000000610 INF: LanePump: Current Position of Pump is: 1920
17-03-18 03:28:14.064 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 03:28:14.194 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 03:28:14.204 -07 000000455 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 113, FrontChillerTemperature: 3.98264,
17-03-18 03:28:14.224 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 03:28:14.654 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 03:28:14.684 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 03:28:14.684 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-18 03:28:14.684 -07 000000610 INF: =================== Cycle #113 ===================
17-03-18 03:28:14.684 -07 000000618 INF: WaitCommand(30000) start
17-03-18 03:28:14.684 -07 000000424 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 03:28:14.684 -07 000000424 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-18 03:28:15.904 -07 000000424 INF: AsyncDelayTimer waited 1216ms
17-03-18 03:28:15.904 -07 000000424 INF: LanePump: Xmit /1?\r
17-03-18 03:28:15.934 -07 000000424 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-18 03:28:15.934 -07 000000424 INF: LanePump: Current Position of Pump is: 1920
17-03-18 03:28:16.064 -07 000000424 INF: LanePump: Xmit /1V1500OA0R\r
17-03-18 03:28:16.104 -07 000000424 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 03:28:16.574 -07 000000444 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 03:28:16.574 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 112. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1635, R2=1705, Total=3340. Warn if over 250 bubbles per interval.
17-03-18 03:28:18.444 -07 000000424 INF: LanePump: Xmit /1Q\r
17-03-18 03:28:18.474 -07 000000424 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 03:28:18.894 -07 000000424 INF: LanePump: Xmit /1Q\r
17-03-18 03:28:18.924 -07 000000424 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 03:28:18.924 -07 000000424 INF: LanePump: Waited 2819 ms for pump motion to complete
17-03-18 03:28:18.924 -07 000000424 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 03:28:18.924 -07 000000424 INF: ===================  ===================
17-03-18 03:28:19.564 -07 000000444 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 113, FrontChillerTemperature: 4.001704,
17-03-18 03:28:21.574 -07 000000629 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 03:28:21.574 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 112. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1635, R2=1705, Total=3340. Warn if over 250 bubbles per interval.
17-03-18 03:28:24.924 -07 000000569 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 113, FrontChillerTemperature: 3.985358,
17-03-18 03:28:26.574 -07 000000579 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 03:28:26.574 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 112. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1635, R2=1705, Total=3340. Warn if over 250 bubbles per interval.
17-03-18 03:28:30.284 -07 000000591 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 113, FrontChillerTemperature: 3.988112,
17-03-18 03:28:31.574 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 03:28:31.574 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 112. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1635, R2=1705, Total=3340. Warn if over 250 bubbles per interval.
17-03-18 03:28:35.644 -07 000000579 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 113, FrontChillerTemperature: 4.001704,
17-03-18 03:28:36.574 -07 000000455 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 03:28:36.574 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 112. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1635, R2=1705, Total=3340. Warn if over 250 bubbles per interval.
17-03-18 03:28:41.004 -07 000000430 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 113, FrontChillerTemperature: 4.011254,
17-03-18 03:28:41.574 -07 000000444 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 03:28:41.574 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 112. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1635, R2=1705, Total=3340. Warn if over 250 bubbles per interval.
17-03-18 03:28:44.694 -07 000000618 INF: WaitCommand(30000) end
17-03-18 03:28:44.694 -07 000000610 INF: =================== Cycle #113, Flow Cell Temp 22° ===================
17-03-18 03:28:44.694 -07 000000610 INF: =================== Cycle #113, Flow Cell Temp 22°, FC temperature to 22° ===================
17-03-18 03:28:44.694 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 22000000\n [FlowCellTempControl]
17-03-18 03:28:44.694 -07 000000606 INF: FPGA: Recv TEC2TEMP 
17-03-18 03:28:44.704 -07 000000610 INF: FPGA: 'TEC2TEMP 0 22000000' command took 1 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 03:28:44.704 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-18 03:28:44.704 -07 000000424 INF: FPGA: Recv TEC2EN 
17-03-18 03:28:44.714 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:28:44.714 -07 000000610 INF: =================== Cycle #113, Flow Cell Temp 22° ===================
17-03-18 03:28:44.714 -07 000000610 INF: =================== Cycle #113 ===================
17-03-18 03:28:44.714 -07 000000610 INF: =================== Cycle #113, Pumping Reagent PR2 (3) ===================
17-03-18 03:28:44.714 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1
17-03-18 03:28:44.714 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 03:28:44.754 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-18 03:28:44.754 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-18 03:28:44.754 -07 000000610 INF: =================== Cycle #113, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 03:28:44.884 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r
17-03-18 03:28:44.924 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 03:28:46.364 -07 000000618 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 113, FrontChillerTemperature: 4.000345,
17-03-18 03:28:46.574 -07 000000618 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 1
17-03-18 03:28:46.574 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 112. Bubbles during last 5000 ms interval: R1=1, R2=0, Total=1. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1636, R2=1705, Total=3341. Warn if over 250 bubbles per interval.
17-03-18 03:28:48.054 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 03:28:48.084 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 03:28:48.504 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 03:28:48.534 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 03:28:48.954 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 03:28:48.984 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 03:28:48.984 -07 000000610 INF: LanePump: Waited 4059 ms for pump motion to complete
17-03-18 03:28:48.984 -07 000000610 INF: =================== Cycle #113, Pumping Reagent PR2 (3) ===================
17-03-18 03:28:49.114 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 03:28:49.144 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 03:28:49.144 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 03:28:49.274 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 03:28:49.304 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 03:28:49.304 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 03:28:49.304 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 03:28:49.434 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 03:28:49.464 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 03:28:49.894 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 03:28:49.924 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 03:28:49.924 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 03:28:49.924 -07 000000610 INF: =================== Cycle #113 ===================
17-03-18 03:28:51.144 -07 000000610 INF: AsyncDelayTimer waited 1217ms
17-03-18 03:28:51.144 -07 000000610 INF: ReagentValve: Go to position 2 - PumpToFlowcell start
17-03-18 03:28:51.144 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 03:28:51.164 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 03:28:51.164 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 2. Moving 1 positions.
17-03-18 03:28:51.164 -07 000000610 INF: ReagentValve: Xmit -02\r
17-03-18 03:28:51.314 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 03:28:51.334 -07 000000610 INF: ReagentValve: Recv 00E3\r
17-03-18 03:28:51.334 -07 000000610 INF: ReagentValve: Move- from 3 to 2 took 227 steps, expected 204. Error = 23 steps (11.3%)
17-03-18 03:28:51.384 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 03:28:51.404 -07 000000610 INF: ReagentValve: Recv 02\r
17-03-18 03:28:51.404 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 03:28:51.504 -07 000000610 INF: =================== Cycle #113, Pumping Reagent USM (2) ===================
17-03-18 03:28:51.504 -07 000000610 INF: LanePump: Pumping from 2, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-18 03:28:51.504 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 03:28:51.534 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 03:28:51.534 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 03:28:51.534 -07 000000610 INF: =================== Cycle #113, Pumping Reagent USM (2), Aspirating port InputPort ===================
17-03-18 03:28:51.574 -07 000000444 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 4 R1 3
17-03-18 03:28:51.574 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 112. Bubbles during last 5000 ms interval: R1=3, R2=4, Total=7. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1639, R2=1709, Total=3348. Warn if over 250 bubbles per interval.
17-03-18 03:28:51.664 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-18 03:28:51.704 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 03:28:51.724 -07 000000461 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 113, FrontChillerTemperature: 4.000345,
17-03-18 03:28:53.144 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 03:28:53.174 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 03:28:53.594 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 03:28:53.624 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 03:28:53.624 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-18 03:28:53.624 -07 000000610 INF: =================== Cycle #113, Pumping Reagent USM (2) ===================
17-03-18 03:28:53.754 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 03:28:53.784 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 03:28:53.784 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 03:28:53.914 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 03:28:53.944 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 03:28:53.944 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 03:28:53.944 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 03:28:54.074 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 03:28:54.104 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 03:28:54.534 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 03:28:54.564 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 03:28:54.564 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 03:28:54.564 -07 000000610 INF: =================== Cycle #113 ===================
17-03-18 03:28:55.784 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-18 03:28:55.784 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-18 03:28:55.784 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 03:28:55.804 -07 000000610 INF: ReagentValve: Recv 02\r
17-03-18 03:28:55.804 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 2 to 3. Moving 1 positions.
17-03-18 03:28:55.804 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-18 03:28:55.954 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 03:28:55.974 -07 000000610 INF: ReagentValve: Recv 00E3\r
17-03-18 03:28:55.974 -07 000000610 INF: ReagentValve: Move+ from 2 to 3 took 227 steps, expected 204. Error = 23 steps (11.3%)
17-03-18 03:28:56.024 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 03:28:56.044 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 03:28:56.044 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 03:28:56.144 -07 000000610 INF: =================== Cycle #113, Pumping Reagent PR2 (3) ===================
17-03-18 03:28:56.144 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-18 03:28:56.144 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 03:28:56.174 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 03:28:56.174 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 03:28:56.174 -07 000000610 INF: =================== Cycle #113, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 03:28:56.304 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-18 03:28:56.344 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 03:28:56.574 -07 000000579 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 2 R1 2
17-03-18 03:28:56.574 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 112. Bubbles during last 5000 ms interval: R1=2, R2=2, Total=4. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1641, R2=1711, Total=3352. Warn if over 250 bubbles per interval.
17-03-18 03:28:57.084 -07 000000501 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 113, FrontChillerTemperature: 3.970374,
17-03-18 03:28:57.214 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 03:28:57.244 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 03:28:57.244 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-18 03:28:57.244 -07 000000610 INF: =================== Cycle #113, Pumping Reagent PR2 (3) ===================
17-03-18 03:28:57.374 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 03:28:57.404 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 03:28:57.404 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-18 03:28:57.534 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 03:28:57.564 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 03:28:57.564 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-18 03:28:57.564 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 03:28:57.694 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 03:28:57.724 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 03:28:58.154 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 03:28:58.184 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 03:28:58.184 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-18 03:28:58.184 -07 000000610 INF: =================== Cycle #113 ===================
17-03-18 03:28:58.184 -07 000000618 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 03:28:58.184 -07 000000561 INF: WaitCommand(10000) start
17-03-18 03:28:58.184 -07 000000618 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-18 03:28:59.404 -07 000000618 INF: AsyncDelayTimer waited 1216ms
17-03-18 03:28:59.404 -07 000000618 INF: LanePump: Xmit /1?\r
17-03-18 03:28:59.434 -07 000000618 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 03:28:59.434 -07 000000618 INF: LanePump: Current Position of Pump is: 1110
17-03-18 03:28:59.564 -07 000000618 INF: LanePump: Xmit /1V1500OA0R\r
17-03-18 03:28:59.604 -07 000000618 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 03:29:01.134 -07 000000618 INF: LanePump: Xmit /1Q\r
17-03-18 03:29:01.164 -07 000000618 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 03:29:01.574 -07 000000579 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 1
17-03-18 03:29:01.574 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 112. Bubbles during last 5000 ms interval: R1=1, R2=1, Total=2. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1642, R2=1712, Total=3354. Warn if over 250 bubbles per interval.
17-03-18 03:29:01.584 -07 000000618 INF: LanePump: Xmit /1Q\r
17-03-18 03:29:01.614 -07 000000618 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 03:29:01.614 -07 000000618 INF: LanePump: Waited 2009 ms for pump motion to complete
17-03-18 03:29:01.614 -07 000000618 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 03:29:01.614 -07 000000618 INF: ===================  ===================
17-03-18 03:29:02.444 -07 000000618 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 113, FrontChillerTemperature: 3.986717,
17-03-18 03:29:06.574 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 03:29:06.574 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 112. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1642, R2=1712, Total=3354. Warn if over 250 bubbles per interval.
17-03-18 03:29:07.804 -07 000000462 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 113, FrontChillerTemperature: 4.004458,
17-03-18 03:29:08.194 -07 000000561 INF: WaitCommand(10000) end
17-03-18 03:29:08.194 -07 000000610 INF: =================== Cycle #113, Imaging ===================
17-03-18 03:29:08.194 -07 000000610 INF: Imaging Cycle 113: ScanTilesCommand Cycle 113 time start.
17-03-18 03:29:08.194 -07 000000610 INF: ReagentValve: Go to position 24 (Plug) - Start of ScanTilesCommand
17-03-18 03:29:08.194 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 03:29:08.224 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 03:29:08.224 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 24. Moving 3 positions.
17-03-18 03:29:08.224 -07 000000610 INF: ReagentValve: Xmit -18\r
17-03-18 03:29:08.524 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 03:29:08.544 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-18 03:29:08.544 -07 000000610 INF: ReagentValve: Move- from 3 to 24 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-18 03:29:08.594 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 03:29:08.614 -07 000000610 INF: ReagentValve: Recv 18\r
17-03-18 03:29:08.614 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:29:08.614 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:29:08.614 -07 000000606 INF: RedLED: Snapping RedLED at power = 1930.000 mW, snap mode for ~0 ms start.
17-03-18 03:29:08.614 -07 000000606 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:29:08.614 -07 000000606 INF: FPGA: Xmit EXLED1ON\n [RedLED]
17-03-18 03:29:08.614 -07 000000430 INF: FPGA: Recv EXLED1ON 
17-03-18 03:29:08.624 -07 000000606 INF: FPGA: 'EXLED1ON' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 03:29:08.624 -07 000000606 INF: FPGA: Xmit EXLED1ADCR\n [RedLED]
17-03-18 03:29:08.624 -07 000000424 INF: FPGA: Recv EXLED1ADCR 23193
17-03-18 03:29:08.634 -07 000000606 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:29:08.634 -07 000000606 INF: RedLED: Using Red data: Photodiode ADC 23193 --> 7.4 mW (old method), or 205.5 mW (new method). Difference = 198.1 mW
17-03-18 03:29:08.634 -07 000000606 INF: FPGA: Xmit EXLED1OFF\n [RedLED]
17-03-18 03:29:08.634 -07 000000462 INF: FPGA: Recv EXLED1OFF 
17-03-18 03:29:08.644 -07 000000606 INF: FPGA: 'EXLED1OFF' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:29:08.644 -07 000000606 INF: RedLED: LED was on for 20 ms
17-03-18 03:29:08.644 -07 000000606 INF: RedLED: Snapping RedLED at power = 1930.000 mW, snap mode for ~0 ms end. Duration was 23 ms.
17-03-18 03:29:08.644 -07 000000606 INF: GreenLED: Snapping GreenLED at power = 5964.000 mW, snap mode for ~0 ms start.
17-03-18 03:29:08.644 -07 000000606 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:29:08.644 -07 000000606 INF: FPGA: Xmit EXLED2ON\n [GreenLED]
17-03-18 03:29:08.644 -07 000000430 INF: FPGA: Recv EXLED2ON 
17-03-18 03:29:08.654 -07 000000606 INF: FPGA: 'EXLED2ON' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 03:29:08.654 -07 000000606 INF: FPGA: Xmit EXLED1ADCR\n [GreenLED]
17-03-18 03:29:08.654 -07 000000618 INF: FPGA: Recv EXLED1ADCR 2098
17-03-18 03:29:08.664 -07 000000606 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:29:08.664 -07 000000606 INF: GreenLED: Using Green data: Photodiode ADC 2098 --> 0.9 mW (old method), or 182.3 mW (new method). Difference = 181.4 mW
17-03-18 03:29:08.664 -07 000000606 INF: FPGA: Xmit EXLED2OFF\n [GreenLED]
17-03-18 03:29:08.664 -07 000000629 INF: FPGA: Recv EXLED2OFF 
17-03-18 03:29:08.674 -07 000000606 INF: FPGA: 'EXLED2OFF' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:29:08.674 -07 000000606 INF: GreenLED: LED was on for 19 ms
17-03-18 03:29:08.674 -07 000000606 INF: GreenLED: Snapping GreenLED at power = 5964.000 mW, snap mode for ~0 ms end. Duration was 28 ms.
17-03-18 03:29:08.674 -07 000000610 INF: FPGA: Xmit EMCUR 80\n [Compensator]
17-03-18 03:29:08.674 -07 000000430 INF: FPGA: Recv EMCUR 
17-03-18 03:29:08.684 -07 000000610 INF: FPGA: 'EMCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 03:29:08.684 -07 000000610 INF: FPGA: Xmit EMOUT 20 70\n [Compensator]
17-03-18 03:29:09.184 -07 000000579 INF: FPGA: Recv EMOUT
17-03-18 03:29:09.184 -07 000000610 INF: FPGA: 'EMOUT 20 70' command took 0 ms to send, 493 ms to get response, and 502 ms overall
17-03-18 03:29:09.184 -07 000000610 INF: FPGA: Xmit EMCUR 75\n [Compensator]
17-03-18 03:29:09.184 -07 000000424 INF: FPGA: Recv EMCUR 
17-03-18 03:29:09.194 -07 000000610 INF: FPGA: 'EMCUR 75' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 03:29:09.194 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 03:29:09.194 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 1 at Y-position 75.3837890625, Z-Position -0.126702594667904. ------
17-03-18 03:29:09.194 -07 000000430 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 03:29:09.194 -07 000000561 INF: Y Motor: MoveYZ optimized starting. Moving Y to 59.9126 mm, moving Z to -0.17870 mm
17-03-18 03:29:09.194 -07 000000561 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 03:29:09.194 -07 000000461 INF: Z Motor: Entering MoveAbsStepped (DAC = 39037, sync = True, waitForSettling = False)
17-03-18 03:29:09.194 -07 000000461 INF: Z Motor: Moving to -0.178700 mm, started at -0.126703 mm, distance = -52.00 um
17-03-18 03:29:09.194 -07 000000606 INF: FPGA: Recv FOCMRRCUR 
17-03-18 03:29:09.204 -07 000000430 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 03:29:09.204 -07 000000462 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True)
17-03-18 03:29:09.204 -07 000000430 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 03:29:09.204 -07 000000462 INF: Y Motor: Moving to 59.9126 mm, started at 75.3838 mm, delta = -15.4712 mm
17-03-18 03:29:09.214 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:29:09.214 -07 000000629 INF: FPGA: Recv YRDPOS 154386
17-03-18 03:29:09.224 -07 000000461 INF: FPGA: Xmit ZDACW 39037\n [Z Motor]
17-03-18 03:29:09.224 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 03:29:09.224 -07 000000462 INF: Y Motor: Encoder = 154386 = motor step 120614.1 = 75.3838 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:29:09.224 -07 000000462 INF: Y Motor: Last commanded position = 75.3806 mm (120608.9 steps), delta from last commanded position = -15.4680 mm (-24748.8 steps). UsingTableMove = False
17-03-18 03:29:09.224 -07 000000629 INF: FPGA: Recv ZDACW
17-03-18 03:29:09.224 -07 000000462 INF: Y Motor: Moving to 122701 encoder counts
17-03-18 03:29:09.234 -07 000000461 INF: FPGA: 'ZDACW 39037' command took 2 ms to send, 0 ms to get response, and 30 ms overall
17-03-18 03:29:09.234 -07 000000461 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:29:09.234 -07 000000424 INF: FPGA: Recv ZDACR 39037
17-03-18 03:29:09.244 -07 000000461 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:29:09.244 -07 000000461 INF: Z Motor: MoveAbsStepped took 41 ms (did NOT wait for settling yet))
17-03-18 03:29:09.244 -07 000000462 INF: FPGA: Xmit YMVTO 122701\n [Y Motor]
17-03-18 03:29:09.404 -07 000000606 INF: FPGA: Recv FOCMRRFOC
17-03-18 03:29:09.404 -07 000000430 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 03:29:10.924 -07 000000629 INF: FPGA: Recv YMVTO 122703 24781
17-03-18 03:29:10.924 -07 000000462 INF: FPGA: 'YMVTO 122701' command took 0 ms to send, 1676 ms to get response, and 1703 ms overall
17-03-18 03:29:10.924 -07 000000462 INF: Y Motor: Position error before settling = 2 encoder counts (0.001 mm)
17-03-18 03:29:10.924 -07 000000462 INF: Y Motor: To move from 75.384 to 59.913 (-15.471 mm) should take 24754 steps, but required 24781 steps (15.488 mm). Slippage = 0.017 mm (0.00%).
17-03-18 03:29:10.924 -07 000000462 INF: Y Motor: FPGA move command 'YMVTO 122701' took 1703 ms, distance = 15.471 mm, average velocity = 9.085 mm/sec
17-03-18 03:29:11.574 -07 000000461 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 03:29:11.574 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 112. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1642, R2=1712, Total=3354. Warn if over 250 bubbles per interval.
17-03-18 03:29:13.164 -07 000000455 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 113, FrontChillerTemperature: 3.989471,
17-03-18 03:29:13.774 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:29:13.774 -07 000000444 INF: FPGA: Recv YRDPOS 122697
17-03-18 03:29:13.784 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:29:13.784 -07 000000462 INF: Y Motor: Encoder = 122697 = motor step 95857.0 = 59.9106 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:29:13.804 -07 000000462 INF: Y Motor: After move to 59.912609, error = -0.001965, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 03:29:13.804 -07 000000462 INF: Y Motor: Position error after settling = -4 encoder counts (-0.002 mm), Delta during settling = -6 counts (-0.003 mm)
17-03-18 03:29:13.814 -07 000000462 INF: Y Motor: Moved to 59.9106 after 4609 ms
17-03-18 03:29:13.814 -07 000000561 INF: Z Motor: EndOfMoveAbsStepped: target = -0.178700 mm (DAC = 39037)
17-03-18 03:29:13.814 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:29:13.824 -07 000000462 INF: FPGA: Recv ZSGSRD 37102
17-03-18 03:29:13.824 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 03:29:13.824 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:29:13.824 -07 000000462 INF: FPGA: Recv ZSGSRD 37110
17-03-18 03:29:13.834 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:29:13.834 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:29:13.834 -07 000000444 INF: FPGA: Recv ZSGSRD 37106
17-03-18 03:29:13.844 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:29:13.844 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:29:13.844 -07 000000424 INF: FPGA: Recv ZSGSRD 37109
17-03-18 03:29:13.854 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:29:13.854 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:29:13.854 -07 000000444 INF: FPGA: Recv ZSGSRD 37109
17-03-18 03:29:13.864 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:29:13.864 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:29:13.864 -07 000000424 INF: FPGA: Recv ZSGSRD 37101
17-03-18 03:29:13.874 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:29:13.874 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:29:13.874 -07 000000462 INF: FPGA: Recv ZSGSRD 37099
17-03-18 03:29:13.884 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:29:13.884 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:29:13.884 -07 000000461 INF: FPGA: Recv ZSGSRD 37098
17-03-18 03:29:13.894 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:29:13.894 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:29:13.894 -07 000000606 INF: FPGA: Recv ZSGSRD 37109
17-03-18 03:29:13.904 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:29:13.904 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:29:13.904 -07 000000424 INF: FPGA: Recv ZSGSRD 37106
17-03-18 03:29:13.914 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:29:13.914 -07 000000561 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:29:13.914 -07 000000455 INF: FPGA: Recv ZPIEZORD 33344
17-03-18 03:29:13.924 -07 000000561 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:29:13.924 -07 000000561 INF: Z Motor: Piezo is near 51.2 V (nominally 0 to 100 V), expect near 59.6 V, since DAC is at 5.957 V. Piezo Error = -8.3 V.
17-03-18 03:29:13.924 -07 000000561 INF: Z Motor: ReadAdcAverage: Commanded Z = -178.7 um, Read 10 ADC samples: Avg = 37105 (-177.8 uncal um), Error = 0.9 uncal um, Median = 37106 (-177.8 uncal um), StdDev = 5 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 37098 (-177.8 uncal um), Max = 37110 (-177.8 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 03:29:13.924 -07 000000561 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37105, posNoise = 5, negNoise = 7
17-03-18 03:29:13.924 -07 000000561 INF: Z Motor: After move to -0.178700, error = 0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:29:13.924 -07 000000561 INF: Z Motor: Settle wait time = 4615 ms, measure time = 106 ms (allowed 150 ms), total time = 4721 ms
17-03-18 03:29:13.924 -07 000000561 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-18 03:29:13.974 -07 000000561 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 4773 ms
17-03-18 03:29:13.974 -07 000000561 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 03:29:13.974 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:29:13.974 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:29:13.974 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:29:13.974 -07 000000606 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 03:29:13.974 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:29:13.974 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:29:13.974 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 03:29:13.974 -07 000000606 INF: Camera: sBCa_SetPowerMode(785074288, 1) start.
17-03-18 03:29:14.004 -07 000000606 INF: Camera: sBCa_SetPowerMode(785074288, 1) end. Duration was 23 ms.
17-03-18 03:29:14.004 -07 000000606 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 03:29:14.004 -07 000000606 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms.
17-03-18 03:29:14.004 -07 000000606 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 03:29:14.024 -07 000000606 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 03:29:14.024 -07 000000606 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 42 ms.
17-03-18 03:29:14.024 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 03:29:14.064 -07 000000561 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 03:29:14.364 -07 000000462 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 03:29:14.364 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 03:29:14.364 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 03:29:14.374 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1077874736, 0x0, 559484976) start.
17-03-18 03:29:14.404 -07 000000444 INF: FPGA: Recv @CAMSNAP 380
17-03-18 03:29:14.404 -07 000000606 INF: FPGA: Recv CAMSNAP
17-03-18 03:29:14.404 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 384 ms overall
17-03-18 03:29:14.494 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1077874736, 0x0, 559484976) end. Duration was 127 ms.
17-03-18 03:29:14.494 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:29:14.494 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 03:29:14.494 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 130 ms.
17-03-18 03:29:14.604 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 03:29:14.604 -07 000000606 INF: Image SNR check: start
17-03-18 03:29:14.604 -07 000000462 INF: FPGA: Recv FOCMRRCUR 
17-03-18 03:29:14.614 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 03:29:14.614 -07 000000424 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 03:29:14.624 -07 000000606 INF: Image SNR check: pass  [peak (Max-Min)=142.17]
17-03-18 03:29:14.624 -07 000000606 INF: Autofocus start
17-03-18 03:29:14.624 -07 000000606 INF: MeasureProfile start
17-03-18 03:29:14.634 -07 000000606 INF: MeasureProfile done
17-03-18 03:29:14.634 -07 000000606 INF: X=0  Z correction [um]=-0.0713522
17-03-18 03:29:14.634 -07 000000606 INF: Autofocus finished
17-03-18 03:29:14.814 -07 000000606 INF: FPGA: Recv FOCMRRIMG
17-03-18 03:29:14.814 -07 000000424 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 03:29:14.814 -07 000000610 INF: ------------ Scan Snapping tile 1 at Y-position 59.91064453125, Z-position -0.178693743531175. ----------
17-03-18 03:29:14.814 -07 000000610 INF: Cycle	113	Tile	1	Exposure Settings		A	406	G	195	T	195	C	406
17-03-18 03:29:14.824 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37534, sync = True, waitForSettling = True)
17-03-18 03:29:14.824 -07 000000610 INF: Z Motor: Moving to -0.171820 mm, started at -0.178694 mm, distance = 6.87 um
17-03-18 03:29:14.824 -07 000000610 INF: FPGA: Xmit ZDACW 37534\n [Z Motor]
17-03-18 03:29:14.824 -07 000000561 INF: FPGA: Recv ZDACW
17-03-18 03:29:14.834 -07 000000610 INF: FPGA: 'ZDACW 37534' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 03:29:14.834 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:29:14.834 -07 000000606 INF: FPGA: Recv ZDACR 37534
17-03-18 03:29:14.844 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:29:14.844 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 03:29:14.994 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:29:14.994 -07 000000424 INF: FPGA: Recv ZSGSRD 36033
17-03-18 03:29:15.004 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:29:15.004 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:29:15.004 -07 000000461 INF: FPGA: Recv ZSGSRD 36041
17-03-18 03:29:15.014 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:29:15.014 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:29:15.014 -07 000000561 INF: FPGA: Recv ZSGSRD 36032
17-03-18 03:29:15.024 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:29:15.024 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:29:15.024 -07 000000444 INF: FPGA: Recv ZSGSRD 36037
17-03-18 03:29:15.034 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:29:15.034 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:29:15.034 -07 000000462 INF: FPGA: Recv ZSGSRD 36038
17-03-18 03:29:15.044 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:29:15.044 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:29:15.044 -07 000000444 INF: FPGA: Recv ZSGSRD 36037
17-03-18 03:29:15.054 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:29:15.054 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:29:15.054 -07 000000561 INF: FPGA: Recv ZSGSRD 36042
17-03-18 03:29:15.064 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:29:15.064 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:29:15.064 -07 000000606 INF: FPGA: Recv ZSGSRD 36037
17-03-18 03:29:15.074 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:29:15.074 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:29:15.074 -07 000000561 INF: FPGA: Recv ZSGSRD 36038
17-03-18 03:29:15.084 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:29:15.084 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:29:15.084 -07 000000455 INF: FPGA: Recv ZSGSRD 36034
17-03-18 03:29:15.094 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:29:15.094 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:29:15.094 -07 000000561 INF: FPGA: Recv ZPIEZORD 31898
17-03-18 03:29:15.104 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:29:15.104 -07 000000610 INF: Z Motor: Piezo is near 48.1 V (nominally 0 to 100 V), expect near 57.3 V, since DAC is at 5.727 V. Piezo Error = -9.1 V.
17-03-18 03:29:15.104 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.8 um, Read 10 ADC samples: Avg = 36037 (-171.0 uncal um), Error = 0.9 uncal um, Median = 36037 (-171.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 36032 (-170.9 uncal um), Max = 36042 (-171.0 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 03:29:15.104 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36037, posNoise = 5, negNoise = 5
17-03-18 03:29:15.104 -07 000000610 INF: Z Motor: After move to -0.171820, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:29:15.104 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 03:29:15.104 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:29:15.104 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:29:15.104 -07 000000461 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:29:15.104 -07 000000444 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:29:15.104 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 03:29:15.104 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:29:15.104 -07 000000606 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 03:29:15.104 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 03:29:15.104 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 03:29:15.104 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 03:29:15.104 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 03:29:15.104 -07 000000606 INF: Camera: sBCa_SetPowerMode(785074704, 1) start.
17-03-18 03:29:15.114 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 03:29:15.114 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 03:29:15.114 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 03:29:15.114 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 03:29:15.134 -07 000000606 INF: Camera: sBCa_SetPowerMode(785074704, 1) end. Duration was 21 ms.
17-03-18 03:29:15.134 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 03:29:15.134 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 03:29:15.134 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 03:29:15.144 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-18 03:29:15.144 -07 000000606 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 36 ms.
17-03-18 03:29:15.144 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 406 406 195 195 37711 150\n [Camera]
17-03-18 03:29:15.344 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 03:29:15.754 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 598
17-03-18 03:29:15.754 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 598
17-03-18 03:29:15.754 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:29:15.754 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:29:15.754 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 1462748432, 0x0, 391868352) start.
17-03-18 03:29:15.754 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 598
17-03-18 03:29:15.754 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 598
17-03-18 03:29:15.754 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:29:15.874 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:29:15.874 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 1132378384, 0x0, 418435064) start.
17-03-18 03:29:15.944 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37711 791
17-03-18 03:29:16.094 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP turning grn on 941
17-03-18 03:29:16.144 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 1462748432, 0x0, 391868352) end. Duration was 393 ms.
17-03-18 03:29:16.144 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-18 03:29:16.144 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:29:16.154 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 03:29:16.154 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 03:29:16.264 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 1132378384, 0x0, 418435064) end. Duration was 386 ms.
17-03-18 03:29:16.264 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-18 03:29:16.264 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:29:16.264 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-18 03:29:16.274 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 515 ms.
17-03-18 03:29:16.284 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1136
17-03-18 03:29:16.284 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1136
17-03-18 03:29:16.294 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:29:16.294 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1136
17-03-18 03:29:16.294 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1136
17-03-18 03:29:16.294 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:29:16.294 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:29:16.294 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 591793880, 0x0, 391868352) start.
17-03-18 03:29:16.304 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:29:16.304 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 03:29:16.484 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP 1329
17-03-18 03:29:16.484 -07 000000444 INF: FPGA: Recv CAMDBLSNAP
17-03-18 03:29:16.484 -07 000000610 INF: FPGA: 'CAMDBLSNAP 406 406 195 195 37711 150' command took 4 ms to send, 1321 ms to get response, and 1335 ms overall
17-03-18 03:29:16.484 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 03:29:16.484 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 2 at Y-position 59.91064453125, Z-Position -0.171832684963775. ------
17-03-18 03:29:16.484 -07 000000626 INF: Y Motor: MoveYZ optimized starting. Moving Y to 60.7426 mm, moving Z to -0.17814 mm
17-03-18 03:29:16.484 -07 000000626 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 03:29:16.484 -07 000000606 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 03:29:16.484 -07 000000591 INF: FPGA: Recv FOCMRRCUR 
17-03-18 03:29:16.494 -07 000000606 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 03:29:16.494 -07 000000606 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 03:29:16.494 -07 000000455 INF: Z Motor: Entering MoveAbsStepped (DAC = 38914, sync = True, waitForSettling = False)
17-03-18 03:29:16.494 -07 000000455 INF: Z Motor: Moving to -0.178137 mm, started at -0.171833 mm, distance = -6.30 um
17-03-18 03:29:16.494 -07 000000424 INF: Y Motor: Entering MoveAbsStepped (target = 97188 steps, sync = True, waitForSettling = True)
17-03-18 03:29:16.494 -07 000000424 INF: Y Motor: Moving to 60.7426 mm, started at 59.9106 mm, delta = 0.8320 mm
17-03-18 03:29:16.504 -07 000000455 INF: FPGA: Xmit ZDACW 38914\n [Z Motor]
17-03-18 03:29:16.504 -07 000000444 INF: FPGA: Recv ZDACW
17-03-18 03:29:16.514 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:29:16.514 -07 000000455 INF: FPGA: 'ZDACW 38914' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 03:29:16.514 -07 000000467 INF: FPGA: Recv YRDPOS 122697
17-03-18 03:29:16.524 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-18 03:29:16.524 -07 000000424 INF: Y Motor: Encoder = 122697 = motor step 95857.0 = 59.9106 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:29:16.524 -07 000000424 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 03:29:16.524 -07 000000455 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:29:16.524 -07 000000424 INF: Y Motor: Moving 1331 steps2
17-03-18 03:29:16.524 -07 000000467 INF: FPGA: Recv ZDACR 38914
17-03-18 03:29:16.534 -07 000000455 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 03:29:16.534 -07 000000455 INF: Z Motor: MoveAbsStepped took 39 ms (did NOT wait for settling yet))
17-03-18 03:29:16.534 -07 000000424 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 03:29:16.574 -07 000000444 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 03:29:16.574 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 112. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1642, R2=1712, Total=3354. Warn if over 250 bubbles per interval.
17-03-18 03:29:16.694 -07 000000455 INF: FPGA: Recv FOCMRRFOC
17-03-18 03:29:16.694 -07 000000606 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 03:29:16.694 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 591793880, 0x0, 391868352) end. Duration was 399 ms.
17-03-18 03:29:16.694 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 03:29:16.694 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:29:16.694 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 396 ms.
17-03-18 03:29:16.694 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-18 03:29:16.694 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:29:16.704 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 03:29:16.704 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-18 03:29:16.704 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 03:29:16.704 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 416 ms.
17-03-18 03:29:16.904 -07 000000512 INF: FPGA: Recv YMVTILE
17-03-18 03:29:16.904 -07 000000424 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-18 03:29:16.944 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:29:16.944 -07 000000606 INF: FPGA: Recv YRDPOS 124381
17-03-18 03:29:16.954 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 03:29:16.954 -07 000000424 INF: Y Motor: Encoder = 124381 = motor step 97172.7 = 60.7329 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:29:16.954 -07 000000424 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-18 03:29:16.954 -07 000000424 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 387 ms, distance = 0.832 mm, average velocity = 2.150 mm/sec
17-03-18 03:29:17.904 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:29:17.904 -07 000000512 INF: FPGA: Recv YRDPOS 124381
17-03-18 03:29:17.914 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:29:17.914 -07 000000424 INF: Y Motor: Encoder = 124381 = motor step 97172.7 = 60.7329 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:29:17.944 -07 000000424 INF: Y Motor: After move to 60.742607, error = -0.009697, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 03:29:17.944 -07 000000424 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 03:29:17.944 -07 000000424 INF: Y Motor: Moved to 60.7329 after 1448 ms (table move)
17-03-18 03:29:17.944 -07 000000626 INF: Z Motor: EndOfMoveAbsStepped: target = -0.178137 mm (DAC = 38914)
17-03-18 03:29:17.944 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:29:17.944 -07 000000561 INF: FPGA: Recv ZSGSRD 37021
17-03-18 03:29:17.954 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 03:29:17.954 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:29:17.954 -07 000000606 INF: FPGA: Recv ZSGSRD 37017
17-03-18 03:29:17.964 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:29:17.964 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:29:17.964 -07 000000561 INF: FPGA: Recv ZSGSRD 37020
17-03-18 03:29:17.974 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:29:17.974 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:29:17.974 -07 000000462 INF: FPGA: Recv ZSGSRD 37013
17-03-18 03:29:17.984 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:29:17.984 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:29:17.984 -07 000000444 INF: FPGA: Recv ZSGSRD 37019
17-03-18 03:29:17.994 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:29:17.994 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:29:17.994 -07 000000444 INF: FPGA: Recv ZSGSRD 37021
17-03-18 03:29:18.004 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:29:18.004 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:29:18.004 -07 000000461 INF: FPGA: Recv ZSGSRD 37021
17-03-18 03:29:18.014 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:29:18.014 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:29:18.014 -07 000000512 INF: FPGA: Recv ZSGSRD 37013
17-03-18 03:29:18.024 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:29:18.024 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:29:18.024 -07 000000462 INF: FPGA: Recv ZSGSRD 37016
17-03-18 03:29:18.034 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:29:18.034 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:29:18.034 -07 000000444 INF: FPGA: Recv ZSGSRD 37019
17-03-18 03:29:18.044 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:29:18.044 -07 000000626 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:29:18.044 -07 000000444 INF: FPGA: Recv ZPIEZORD 33226
17-03-18 03:29:18.054 -07 000000626 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:29:18.054 -07 000000626 INF: Z Motor: Piezo is near 51.0 V (nominally 0 to 100 V), expect near 59.4 V, since DAC is at 5.938 V. Piezo Error = -8.4 V.
17-03-18 03:29:18.054 -07 000000626 INF: Z Motor: ReadAdcAverage: Commanded Z = -178.1 um, Read 10 ADC samples: Avg = 37018 (-177.2 uncal um), Error = 0.9 uncal um, Median = 37019 (-177.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 37013 (-177.2 uncal um), Max = 37021 (-177.3 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 03:29:18.054 -07 000000626 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37018, posNoise = 3, negNoise = 5
17-03-18 03:29:18.054 -07 000000626 INF: Z Motor: After move to -0.178137, error = 0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:29:18.054 -07 000000626 INF: Z Motor: Settle wait time = 1453 ms, measure time = 106 ms (allowed 150 ms), total time = 1559 ms
17-03-18 03:29:18.054 -07 000000626 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-18 03:29:18.104 -07 000000626 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1613 ms
17-03-18 03:29:18.104 -07 000000626 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 03:29:18.104 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:29:18.104 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:29:18.104 -07 000000467 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:29:18.104 -07 000000444 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:29:18.104 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 03:29:18.104 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:29:18.114 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 03:29:18.114 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 03:29:18.114 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 03:29:18.114 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 03:29:18.124 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 03:29:18.124 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-18 03:29:18.134 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 03:29:18.174 -07 000000461 INF: FPGA: Recv @CAMSNAP turning led on 42
17-03-18 03:29:18.474 -07 000000444 INF: FPGA: Recv @CAMSNAP img rdy 342
17-03-18 03:29:18.474 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 342
17-03-18 03:29:18.474 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 03:29:18.474 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1077874736, 0x0, 559484976) start.
17-03-18 03:29:18.514 -07 000000444 INF: FPGA: Recv @CAMSNAP 380
17-03-18 03:29:18.514 -07 000000626 INF: FPGA: Recv CAMSNAP
17-03-18 03:29:18.514 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 386 ms overall
17-03-18 03:29:18.524 -07 000000444 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 113, FrontChillerTemperature: 3.981281,
17-03-18 03:29:18.604 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1077874736, 0x0, 559484976) end. Duration was 126 ms.
17-03-18 03:29:18.604 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:29:18.604 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 03:29:18.604 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms.
17-03-18 03:29:18.714 -07 000000467 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 03:29:18.714 -07 000000461 INF: Autofocus start
17-03-18 03:29:18.714 -07 000000461 INF: MeasureProfile start
17-03-18 03:29:18.714 -07 000000512 INF: FPGA: Recv FOCMRRCUR 
17-03-18 03:29:18.724 -07 000000467 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 03:29:18.724 -07 000000467 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 03:29:18.724 -07 000000461 INF: MeasureProfile done
17-03-18 03:29:18.724 -07 000000461 INF: X=32  Z correction [um]=0.09220707
17-03-18 03:29:18.724 -07 000000461 INF: Autofocus finished
17-03-18 03:29:18.924 -07 000000461 INF: FPGA: Recv FOCMRRIMG
17-03-18 03:29:18.924 -07 000000467 INF: FPGA: 'FOCMRRIMG' command took 1 ms to send, 194 ms to get response, and 204 ms overall
17-03-18 03:29:18.924 -07 000000610 INF: ------------ Scan Snapping tile 2 at Y-position 60.73291015625, Z-position -0.178134837074842. ----------
17-03-18 03:29:18.924 -07 000000610 INF: Cycle	113	Tile	2	Exposure Settings		A	406	G	195	T	195	C	406
17-03-18 03:29:18.934 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37447, sync = True, waitForSettling = True)
17-03-18 03:29:18.934 -07 000000610 INF: Z Motor: Moving to -0.171421 mm, started at -0.178135 mm, distance = 6.71 um
17-03-18 03:29:18.934 -07 000000610 INF: FPGA: Xmit ZDACW 37447\n [Z Motor]
17-03-18 03:29:18.934 -07 000000462 INF: FPGA: Recv ZDACW
17-03-18 03:29:18.944 -07 000000610 INF: FPGA: 'ZDACW 37447' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 03:29:18.944 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:29:18.944 -07 000000512 INF: FPGA: Recv ZDACR 37447
17-03-18 03:29:18.954 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:29:18.954 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 03:29:19.104 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:29:19.104 -07 000000462 INF: FPGA: Recv ZSGSRD 35976
17-03-18 03:29:19.114 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:29:19.114 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:29:19.114 -07 000000467 INF: FPGA: Recv ZSGSRD 35975
17-03-18 03:29:19.124 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:29:19.124 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:29:19.124 -07 000000444 INF: FPGA: Recv ZSGSRD 35971
17-03-18 03:29:19.134 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:29:19.134 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:29:19.134 -07 000000626 INF: FPGA: Recv ZSGSRD 35971
17-03-18 03:29:19.144 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:29:19.144 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:29:19.144 -07 000000626 INF: FPGA: Recv ZSGSRD 35981
17-03-18 03:29:19.154 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:29:19.154 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:29:19.154 -07 000000462 INF: FPGA: Recv ZSGSRD 35972
17-03-18 03:29:19.164 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:29:19.164 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:29:19.164 -07 000000461 INF: FPGA: Recv ZSGSRD 35980
17-03-18 03:29:19.174 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:29:19.174 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:29:19.174 -07 000000462 INF: FPGA: Recv ZSGSRD 35975
17-03-18 03:29:19.184 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:29:19.184 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:29:19.184 -07 000000512 INF: FPGA: Recv ZSGSRD 35974
17-03-18 03:29:19.194 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:29:19.194 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:29:19.194 -07 000000462 INF: FPGA: Recv ZSGSRD 35976
17-03-18 03:29:19.204 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:29:19.204 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:29:19.204 -07 000000512 INF: FPGA: Recv ZPIEZORD 31844
17-03-18 03:29:19.214 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:29:19.214 -07 000000610 INF: Z Motor: Piezo is near 48.0 V (nominally 0 to 100 V), expect near 57.1 V, since DAC is at 5.714 V. Piezo Error = -9.1 V.
17-03-18 03:29:19.214 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.4 um, Read 10 ADC samples: Avg = 35975 (-170.6 uncal um), Error = 0.9 uncal um, Median = 35975 (-170.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35971 (-170.5 uncal um), Max = 35981 (-170.6 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 03:29:19.214 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35975, posNoise = 6, negNoise = 4
17-03-18 03:29:19.214 -07 000000610 INF: Z Motor: After move to -0.171421, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:29:19.214 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 03:29:19.214 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:29:19.214 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:29:19.214 -07 000000461 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:29:19.214 -07 000000467 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:29:19.214 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 03:29:19.214 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:29:19.214 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 03:29:19.214 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 03:29:19.214 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 03:29:19.214 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 03:29:19.214 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 03:29:19.214 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 03:29:19.224 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 03:29:19.224 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 03:29:19.224 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-18 03:29:19.224 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 03:29:19.234 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 03:29:19.234 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 03:29:19.234 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 03:29:19.234 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 03:29:19.234 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 406 406 195 195 37624 150\n [Camera]
17-03-18 03:29:19.434 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 03:29:19.844 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 598
17-03-18 03:29:19.844 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 598
17-03-18 03:29:19.844 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:29:19.844 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 598
17-03-18 03:29:19.844 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 598
17-03-18 03:29:19.844 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:29:19.954 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:29:19.954 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 1096956120, 0x0, 391868352) start.
17-03-18 03:29:19.964 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:29:19.964 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) start.
17-03-18 03:29:20.034 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37624 791
17-03-18 03:29:20.184 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning grn on 941
17-03-18 03:29:20.354 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 1096956120, 0x0, 391868352) end. Duration was 394 ms.
17-03-18 03:29:20.354 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 03:29:20.354 -07 000000444 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:29:20.354 -07 000000444 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:29:20.354 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 510 ms.
17-03-18 03:29:20.354 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) end. Duration was 395 ms.
17-03-18 03:29:20.354 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 03:29:20.354 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:29:20.364 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:29:20.364 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 518 ms.
17-03-18 03:29:20.384 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1136
17-03-18 03:29:20.384 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1136
17-03-18 03:29:20.384 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:29:20.384 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1136
17-03-18 03:29:20.384 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1136
17-03-18 03:29:20.384 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:29:20.394 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:29:20.394 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 03:29:20.394 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:29:20.394 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 1458343128, 0x0, 418435064) start.
17-03-18 03:29:20.574 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP 1331
17-03-18 03:29:20.574 -07 000000629 INF: FPGA: Recv CAMDBLSNAP
17-03-18 03:29:20.574 -07 000000610 INF: FPGA: 'CAMDBLSNAP 406 406 195 195 37624 150' command took 2 ms to send, 1327 ms to get response, and 1338 ms overall
17-03-18 03:29:20.574 -07 000000610 INF: Skipping AutoFocus in Tile 3: adopting Best-Z from the cache: -0.172082
17-03-18 03:29:20.584 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 61.5726 mm, moving Z to -0.17208 mm
17-03-18 03:29:20.584 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 03:29:20.584 -07 000000512 INF: Y Motor: Entering MoveAbsStepped (target = 98516 steps, sync = True, waitForSettling = True)
17-03-18 03:29:20.584 -07 000000512 INF: Y Motor: Moving to 61.5726 mm, started at 60.7329 mm, delta = 0.8397 mm
17-03-18 03:29:20.584 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:29:20.584 -07 000000467 INF: Z Motor: Entering MoveAbsStepped (DAC = 37591, sync = True, waitForSettling = False)
17-03-18 03:29:20.584 -07 000000467 INF: Z Motor: Moving to -0.172081 mm, started at -0.171434 mm, distance = -0.65 um
17-03-18 03:29:20.584 -07 000000626 INF: FPGA: Recv YRDPOS 124381
17-03-18 03:29:20.594 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 03:29:20.594 -07 000000512 INF: Y Motor: Encoder = 124381 = motor step 97172.7 = 60.7329 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:29:20.594 -07 000000512 INF: Y Motor: Last commanded position = 60.7426 mm (97188.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 03:29:20.594 -07 000000512 INF: Y Motor: Moving 1344 steps-20
17-03-18 03:29:20.594 -07 000000467 INF: FPGA: Xmit ZDACW 37591\n [Z Motor]
17-03-18 03:29:20.594 -07 000000626 INF: FPGA: Recv ZDACW
17-03-18 03:29:20.604 -07 000000467 INF: FPGA: 'ZDACW 37591' command took 3 ms to send, 0 ms to get response, and 16 ms overall
17-03-18 03:29:20.604 -07 000000512 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 03:29:20.614 -07 000000467 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:29:20.614 -07 000000629 INF: FPGA: Recv ZDACR 37591
17-03-18 03:29:20.624 -07 000000467 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 03:29:20.624 -07 000000467 INF: Z Motor: MoveAbsStepped took 36 ms (did NOT wait for settling yet))
17-03-18 03:29:20.784 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 397 ms.
17-03-18 03:29:20.794 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 03:29:20.794 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:29:20.794 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 1458343128, 0x0, 418435064) end. Duration was 395 ms.
17-03-18 03:29:20.794 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 03:29:20.794 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:29:20.794 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 03:29:20.794 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 410 ms.
17-03-18 03:29:20.794 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:29:20.804 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 415 ms.
17-03-18 03:29:20.974 -07 000000462 INF: FPGA: Recv YMVTILE
17-03-18 03:29:20.974 -07 000000512 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 385 ms overall
17-03-18 03:29:21.024 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:29:21.024 -07 000000444 INF: FPGA: Recv YRDPOS 126083
17-03-18 03:29:21.034 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 03:29:21.034 -07 000000512 INF: Y Motor: Encoder = 126083 = motor step 98502.3 = 61.5640 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:29:21.034 -07 000000512 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-18 03:29:21.034 -07 000000512 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 385 ms, distance = 0.840 mm, average velocity = 2.181 mm/sec
17-03-18 03:29:21.574 -07 000000444 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 03:29:21.584 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 112. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1642, R2=1712, Total=3354. Warn if over 250 bubbles per interval.
17-03-18 03:29:21.984 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:29:21.984 -07 000000501 INF: FPGA: Recv YRDPOS 126083
17-03-18 03:29:21.994 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:29:21.994 -07 000000512 INF: Y Motor: Encoder = 126083 = motor step 98502.3 = 61.5640 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:29:22.014 -07 000000512 INF: Y Motor: After move to 61.572609, error = -0.008644, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 03:29:22.014 -07 000000512 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 03:29:22.014 -07 000000512 INF: Y Motor: Moved to 61.5640 after 1435 ms (table move)
17-03-18 03:29:22.024 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.172081 mm (DAC = 37591)
17-03-18 03:29:22.024 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:29:22.024 -07 000000462 INF: FPGA: Recv ZSGSRD 36078
17-03-18 03:29:22.034 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 03:29:22.034 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:29:22.034 -07 000000467 INF: FPGA: Recv ZSGSRD 36072
17-03-18 03:29:22.044 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:29:22.044 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:29:22.044 -07 000000444 INF: FPGA: Recv ZSGSRD 36083
17-03-18 03:29:22.054 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:29:22.054 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:29:22.054 -07 000000461 INF: FPGA: Recv ZSGSRD 36083
17-03-18 03:29:22.064 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:29:22.064 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:29:22.064 -07 000000467 INF: FPGA: Recv ZSGSRD 36075
17-03-18 03:29:22.074 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:29:22.074 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:29:22.074 -07 000000444 INF: FPGA: Recv ZSGSRD 36069
17-03-18 03:29:22.084 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:29:22.084 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:29:22.084 -07 000000512 INF: FPGA: Recv ZSGSRD 36076
17-03-18 03:29:22.094 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:29:22.094 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:29:22.094 -07 000000629 INF: FPGA: Recv ZSGSRD 36073
17-03-18 03:29:22.104 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:29:22.104 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:29:22.104 -07 000000629 INF: FPGA: Recv ZSGSRD 36073
17-03-18 03:29:22.114 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:29:22.114 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:29:22.114 -07 000000501 INF: FPGA: Recv ZSGSRD 36070
17-03-18 03:29:22.124 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:29:22.124 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:29:22.124 -07 000000444 INF: FPGA: Recv ZPIEZORD 32017
17-03-18 03:29:22.134 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:29:22.134 -07 000000610 INF: Z Motor: Piezo is near 48.4 V (nominally 0 to 100 V), expect near 57.4 V, since DAC is at 5.736 V. Piezo Error = -9.0 V.
17-03-18 03:29:22.134 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.1 um, Read 10 ADC samples: Avg = 36075 (-171.2 uncal um), Error = 0.9 uncal um, Median = 36074 (-171.2 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 36069 (-171.2 uncal um), Max = 36083 (-171.2 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 03:29:22.134 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36075, posNoise = 8, negNoise = 6
17-03-18 03:29:22.134 -07 000000610 INF: Z Motor: After move to -0.172081, error = 0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:29:22.134 -07 000000610 INF: Z Motor: Settle wait time = 1437 ms, measure time = 109 ms (allowed 150 ms), total time = 1546 ms
17-03-18 03:29:22.134 -07 000000610 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-18 03:29:22.184 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1599 ms
17-03-18 03:29:22.184 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 03:29:22.184 -07 000000610 INF: ------------ Scan Snapping tile 3 at Y-position 61.56396484375, Z-position -0.172076805025161. ----------
17-03-18 03:29:22.184 -07 000000610 INF: Cycle	113	Tile	3	Exposure Settings		A	406	G	195	T	195	C	406
17-03-18 03:29:22.184 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37415, sync = True, waitForSettling = True)
17-03-18 03:29:22.184 -07 000000610 INF: Z Motor: Moving to -0.171275 mm, started at -0.172077 mm, distance = 0.80 um
17-03-18 03:29:22.184 -07 000000610 INF: FPGA: Xmit ZDACW 37415\n [Z Motor]
17-03-18 03:29:22.194 -07 000000501 INF: FPGA: Recv ZDACW
17-03-18 03:29:22.194 -07 000000610 INF: FPGA: 'ZDACW 37415' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-18 03:29:22.194 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:29:22.194 -07 000000629 INF: FPGA: Recv ZDACR 37415
17-03-18 03:29:22.204 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 03:29:22.204 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 03:29:22.354 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:29:22.354 -07 000000462 INF: FPGA: Recv ZSGSRD 35950
17-03-18 03:29:22.364 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:29:22.364 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:29:22.364 -07 000000462 INF: FPGA: Recv ZSGSRD 35956
17-03-18 03:29:22.374 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:29:22.374 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:29:22.374 -07 000000501 INF: FPGA: Recv ZSGSRD 35963
17-03-18 03:29:22.384 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:29:22.384 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:29:22.384 -07 000000512 INF: FPGA: Recv ZSGSRD 35947
17-03-18 03:29:22.394 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:29:22.394 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:29:22.394 -07 000000501 INF: FPGA: Recv ZSGSRD 35950
17-03-18 03:29:22.404 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:29:22.404 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:29:22.404 -07 000000444 INF: FPGA: Recv ZSGSRD 35950
17-03-18 03:29:22.414 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:29:22.414 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:29:22.414 -07 000000512 INF: FPGA: Recv ZSGSRD 35950
17-03-18 03:29:22.424 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:29:22.424 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:29:22.424 -07 000000501 INF: FPGA: Recv ZSGSRD 35952
17-03-18 03:29:22.434 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:29:22.434 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:29:22.434 -07 000000629 INF: FPGA: Recv ZSGSRD 35948
17-03-18 03:29:22.444 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:29:22.444 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:29:22.444 -07 000000512 INF: FPGA: Recv ZSGSRD 35960
17-03-18 03:29:22.454 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:29:22.454 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:29:22.454 -07 000000444 INF: FPGA: Recv ZPIEZORD 31866
17-03-18 03:29:22.464 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:29:22.464 -07 000000610 INF: Z Motor: Piezo is near 48.1 V (nominally 0 to 100 V), expect near 57.1 V, since DAC is at 5.709 V. Piezo Error = -9.0 V.
17-03-18 03:29:22.464 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.3 um, Read 10 ADC samples: Avg = 35953 (-170.4 uncal um), Error = 0.9 uncal um, Median = 35950 (-170.4 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 35947 (-170.4 uncal um), Max = 35963 (-170.5 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 03:29:22.464 -07 000000610 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35953, posNoise = 10, negNoise = 6
17-03-18 03:29:22.464 -07 000000610 INF: Z Motor: After move to -0.171275, error = -0.000018, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:29:22.464 -07 000000610 INF: Z Motor: MoveAbsStepped took 272 ms)
17-03-18 03:29:22.464 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:29:22.464 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:29:22.464 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:29:22.464 -07 000000629 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 03:29:22.464 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:29:22.474 -07 000000444 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 03:29:22.474 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 03:29:22.474 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 3 ms.
17-03-18 03:29:22.474 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 03:29:22.474 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 03:29:22.474 -07 000000444 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 03:29:22.474 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:29:22.474 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-18 03:29:22.474 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 03:29:22.474 -07 000000444 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-18 03:29:22.474 -07 000000444 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 03:29:22.494 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 03:29:22.494 -07 000000629 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 26 ms.
17-03-18 03:29:22.494 -07 000000444 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-18 03:29:22.494 -07 000000444 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 26 ms.
17-03-18 03:29:22.494 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 406 406 195 195 37591 150\n [Camera]
17-03-18 03:29:22.694 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 03:29:23.104 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 598
17-03-18 03:29:23.104 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 598
17-03-18 03:29:23.104 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:29:23.104 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:29:23.104 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 03:29:23.104 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 598
17-03-18 03:29:23.104 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 598
17-03-18 03:29:23.104 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:29:23.104 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:29:23.104 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 1132378384, 0x0, 418435064) start.
17-03-18 03:29:23.294 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37591 791
17-03-18 03:29:23.444 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning grn on 941
17-03-18 03:29:23.484 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 1132378384, 0x0, 418435064) end. Duration was 375 ms.
17-03-18 03:29:23.484 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-18 03:29:23.484 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:29:23.484 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 381 ms.
17-03-18 03:29:23.484 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-18 03:29:23.484 -07 000000444 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:29:23.484 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 03:29:23.494 -07 000000444 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 03:29:23.494 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-18 03:29:23.494 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-18 03:29:23.644 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1136
17-03-18 03:29:23.644 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1136
17-03-18 03:29:23.644 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:29:23.644 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:29:23.644 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 1167800648, 0x0, 391868352) start.
17-03-18 03:29:23.644 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1136
17-03-18 03:29:23.644 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1136
17-03-18 03:29:23.644 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:29:23.764 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:29:23.764 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) start.
17-03-18 03:29:23.834 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP 1329
17-03-18 03:29:23.834 -07 000000462 INF: FPGA: Recv CAMDBLSNAP
17-03-18 03:29:23.834 -07 000000610 INF: FPGA: 'CAMDBLSNAP 406 406 195 195 37591 150' command took 2 ms to send, 1324 ms to get response, and 1336 ms overall
17-03-18 03:29:23.834 -07 000000610 INF: Skipping AutoFocus in Tile 4: adopting Best-Z from the cache: -0.171600
17-03-18 03:29:23.834 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 62.4026 mm, moving Z to -0.17160 mm
17-03-18 03:29:23.834 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 03:29:23.834 -07 000000512 INF: Y Motor: Entering MoveAbsStepped (target = 99844 steps, sync = True, waitForSettling = True)
17-03-18 03:29:23.834 -07 000000512 INF: Y Motor: Moving to 62.4026 mm, started at 61.5640 mm, delta = 0.8386 mm
17-03-18 03:29:23.834 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:29:23.834 -07 000000430 INF: Z Motor: Entering MoveAbsStepped (DAC = 37486, sync = True, waitForSettling = False)
17-03-18 03:29:23.834 -07 000000430 INF: Z Motor: Moving to -0.171600 mm, started at -0.171293 mm, distance = -0.31 um
17-03-18 03:29:23.844 -07 000000430 INF: FPGA: Xmit ZDACW 37486\n [Z Motor]
17-03-18 03:29:23.844 -07 000000462 INF: FPGA: Recv YRDPOS 126083
17-03-18 03:29:23.844 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-18 03:29:23.844 -07 000000512 INF: Y Motor: Encoder = 126083 = motor step 98502.3 = 61.5640 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:29:23.844 -07 000000512 INF: Y Motor: Last commanded position = 61.5726 mm (98516.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 03:29:23.844 -07 000000512 INF: Y Motor: Moving 1342 steps-18
17-03-18 03:29:23.844 -07 000000629 INF: FPGA: Recv ZDACW
17-03-18 03:29:23.854 -07 000000430 INF: FPGA: 'ZDACW 37486' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:29:23.854 -07 000000430 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:29:23.854 -07 000000462 INF: FPGA: Recv ZDACR 37486
17-03-18 03:29:23.864 -07 000000512 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 03:29:23.864 -07 000000430 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:29:23.864 -07 000000430 INF: Z Motor: MoveAbsStepped took 20 ms (did NOT wait for settling yet))
17-03-18 03:29:23.884 -07 000000629 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 113, FrontChillerTemperature: 4.003063,
17-03-18 03:29:24.024 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 1167800648, 0x0, 391868352) end. Duration was 380 ms.
17-03-18 03:29:24.024 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-18 03:29:24.024 -07 000000444 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:29:24.024 -07 000000444 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:29:24.024 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-18 03:29:24.134 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) end. Duration was 375 ms.
17-03-18 03:29:24.134 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-18 03:29:24.144 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:29:24.144 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:29:24.144 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 503 ms.
17-03-18 03:29:24.234 -07 000000444 INF: FPGA: Recv YMVTILE
17-03-18 03:29:24.234 -07 000000512 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 395 ms overall
17-03-18 03:29:24.284 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:29:24.284 -07 000000462 INF: FPGA: Recv YRDPOS 127786
17-03-18 03:29:24.294 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 03:29:24.294 -07 000000512 INF: Y Motor: Encoder = 127786 = motor step 99832.8 = 62.3955 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:29:24.294 -07 000000512 INF: Y Motor: Position error before settling (table move) = -15 encoder counts (-0.007 mm)
17-03-18 03:29:24.294 -07 000000512 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 396 ms, distance = 0.839 mm, average velocity = 2.118 mm/sec
17-03-18 03:29:25.244 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:29:25.244 -07 000000444 INF: FPGA: Recv YRDPOS 127786
17-03-18 03:29:25.254 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:29:25.254 -07 000000512 INF: Y Motor: Encoder = 127786 = motor step 99832.8 = 62.3955 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:29:25.274 -07 000000512 INF: Y Motor: After move to 62.402607, error = -0.007099, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 03:29:25.274 -07 000000512 INF: Y Motor: Position error after settling (table move) = -15 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 03:29:25.274 -07 000000512 INF: Y Motor: Moved to 62.3955 after 1439 ms (table move)
17-03-18 03:29:25.284 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.171600 mm (DAC = 37486)
17-03-18 03:29:25.284 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:29:25.284 -07 000000591 INF: FPGA: Recv ZSGSRD 36005
17-03-18 03:29:25.294 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:29:25.294 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:29:25.294 -07 000000629 INF: FPGA: Recv ZSGSRD 36000
17-03-18 03:29:25.304 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:29:25.304 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:29:25.304 -07 000000579 INF: FPGA: Recv ZSGSRD 36005
17-03-18 03:29:25.314 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:29:25.314 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:29:25.314 -07 000000618 INF: FPGA: Recv ZSGSRD 36018
17-03-18 03:29:25.324 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:29:25.324 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:29:25.324 -07 000000512 INF: FPGA: Recv ZSGSRD 36006
17-03-18 03:29:25.334 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 03:29:25.334 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:29:25.334 -07 000000629 INF: FPGA: Recv ZSGSRD 36004
17-03-18 03:29:25.344 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:29:25.344 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:29:25.344 -07 000000512 INF: FPGA: Recv ZSGSRD 35989
17-03-18 03:29:25.354 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:29:25.354 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:29:25.354 -07 000000512 INF: FPGA: Recv ZSGSRD 36005
17-03-18 03:29:25.364 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:29:25.364 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:29:25.364 -07 000000618 INF: FPGA: Recv ZSGSRD 36001
17-03-18 03:29:25.374 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:29:25.374 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:29:25.374 -07 000000512 INF: FPGA: Recv ZSGSRD 36002
17-03-18 03:29:25.384 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:29:25.384 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:29:25.384 -07 000000430 INF: FPGA: Recv ZPIEZORD 31934
17-03-18 03:29:25.394 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:29:25.394 -07 000000610 INF: Z Motor: Piezo is near 48.2 V (nominally 0 to 100 V), expect near 57.2 V, since DAC is at 5.720 V. Piezo Error = -9.0 V.
17-03-18 03:29:25.394 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.6 um, Read 10 ADC samples: Avg = 36004 (-170.7 uncal um), Error = 0.9 uncal um, Median = 36004 (-170.7 uncal um), StdDev = 7 (0.0 uncal um), Range = 29 (0.2 uncal um), Min = 35989 (-170.6 uncal um), Max = 36018 (-170.8 uncal um), Pos Noise = 14 (0.1 uncal um), Neg Noise = 15 (0.1 uncal um)
17-03-18 03:29:25.394 -07 000000610 INF: Z Motor: ADC noise = 15, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36004, posNoise = 14, negNoise = 15
17-03-18 03:29:25.394 -07 000000610 INF: Z Motor: After move to -0.171600, error = -0.000021, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:29:25.394 -07 000000610 INF: Z Motor: Settle wait time = 1440 ms, measure time = 111 ms (allowed 150 ms), total time = 1551 ms
17-03-18 03:29:25.394 -07 000000610 INF: Z Motor: Waiting extra 39 ms after reading position to reach expected total of 150 ms
17-03-18 03:29:25.434 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1593 ms
17-03-18 03:29:25.434 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 03:29:25.434 -07 000000610 INF: ------------ Scan Snapping tile 4 at Y-position 62.3955078125, Z-position -0.171620685963096. ----------
17-03-18 03:29:25.434 -07 000000610 INF: Cycle	113	Tile	4	Exposure Settings		A	406	G	195	T	195	C	406
17-03-18 03:29:25.434 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37309, sync = True, waitForSettling = True)
17-03-18 03:29:25.434 -07 000000610 INF: Z Motor: Moving to -0.170790 mm, started at -0.171621 mm, distance = 0.83 um
17-03-18 03:29:25.434 -07 000000610 INF: FPGA: Xmit ZDACW 37309\n [Z Motor]
17-03-18 03:29:25.434 -07 000000430 INF: FPGA: Recv ZDACW
17-03-18 03:29:25.444 -07 000000610 INF: FPGA: 'ZDACW 37309' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 03:29:25.444 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:29:25.444 -07 000000579 INF: FPGA: Recv ZDACR 37309
17-03-18 03:29:25.454 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:29:25.454 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 03:29:25.604 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:29:25.604 -07 000000430 INF: FPGA: Recv ZSGSRD 35878
17-03-18 03:29:25.614 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:29:25.614 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:29:25.614 -07 000000430 INF: FPGA: Recv ZSGSRD 35878
17-03-18 03:29:25.624 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:29:25.624 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:29:25.624 -07 000000618 INF: FPGA: Recv ZSGSRD 35875
17-03-18 03:29:25.634 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:29:25.634 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:29:25.634 -07 000000512 INF: FPGA: Recv ZSGSRD 35879
17-03-18 03:29:25.644 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:29:25.644 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:29:25.644 -07 000000618 INF: FPGA: Recv ZSGSRD 35880
17-03-18 03:29:25.654 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:29:25.654 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:29:25.654 -07 000000579 INF: FPGA: Recv ZSGSRD 35878
17-03-18 03:29:25.664 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:29:25.664 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:29:25.664 -07 000000618 INF: FPGA: Recv ZSGSRD 35870
17-03-18 03:29:25.674 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:29:25.674 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:29:25.674 -07 000000512 INF: FPGA: Recv ZSGSRD 35870
17-03-18 03:29:25.684 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:29:25.684 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:29:25.684 -07 000000512 INF: FPGA: Recv ZSGSRD 35877
17-03-18 03:29:25.694 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:29:25.694 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:29:25.694 -07 000000579 INF: FPGA: Recv ZSGSRD 35875
17-03-18 03:29:25.704 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 03:29:25.704 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:29:25.704 -07 000000618 INF: FPGA: Recv ZPIEZORD 31728
17-03-18 03:29:25.714 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:29:25.714 -07 000000610 INF: Z Motor: Piezo is near 47.8 V (nominally 0 to 100 V), expect near 56.9 V, since DAC is at 5.693 V. Piezo Error = -9.2 V.
17-03-18 03:29:25.714 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.8 um, Read 10 ADC samples: Avg = 35876 (-169.9 uncal um), Error = 0.9 uncal um, Median = 35878 (-169.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35870 (-169.9 uncal um), Max = 35880 (-169.9 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 03:29:25.714 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35876, posNoise = 4, negNoise = 6
17-03-18 03:29:25.714 -07 000000610 INF: Z Motor: After move to -0.170790, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:29:25.714 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-18 03:29:25.714 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:29:25.714 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:29:25.714 -07 000000430 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:29:25.714 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 03:29:25.714 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 03:29:25.714 -07 000000629 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:29:25.714 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 03:29:25.714 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:29:25.714 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 03:29:25.714 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 03:29:25.714 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 03:29:25.714 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 03:29:25.714 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 03:29:25.714 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 03:29:25.724 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 03:29:25.724 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 03:29:25.734 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms.
17-03-18 03:29:25.734 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 18 ms.
17-03-18 03:29:25.734 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 14 ms.
17-03-18 03:29:25.734 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 19 ms.
17-03-18 03:29:25.744 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 406 406 195 195 37486 150\n [Camera]
17-03-18 03:29:25.944 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 03:29:26.344 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 598
17-03-18 03:29:26.344 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 598
17-03-18 03:29:26.344 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:29:26.344 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 598
17-03-18 03:29:26.344 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 598
17-03-18 03:29:26.354 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:29:26.354 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:29:26.354 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 03:29:26.354 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:29:26.354 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 1458343128, 0x0, 418435064) start.
17-03-18 03:29:26.534 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37486 791
17-03-18 03:29:26.584 -07 000000629 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 03:29:26.584 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 112. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1642, R2=1712, Total=3354. Warn if over 250 bubbles per interval.
17-03-18 03:29:26.684 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP turning grn on 941
17-03-18 03:29:26.724 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 373 ms.
17-03-18 03:29:26.724 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 374 ms.
17-03-18 03:29:26.724 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:29:26.724 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 1458343128, 0x0, 418435064) end. Duration was 371 ms.
17-03-18 03:29:26.724 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 372 ms.
17-03-18 03:29:26.724 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:29:26.734 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 03:29:26.734 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-18 03:29:26.734 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 03:29:26.734 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-18 03:29:26.884 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1136
17-03-18 03:29:26.884 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1136
17-03-18 03:29:26.884 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:29:26.884 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1136
17-03-18 03:29:26.884 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1136
17-03-18 03:29:26.884 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:29:26.884 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:29:26.884 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 03:29:26.894 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:29:26.894 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start.
17-03-18 03:29:27.074 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP 1329
17-03-18 03:29:27.074 -07 000000455 INF: FPGA: Recv CAMDBLSNAP
17-03-18 03:29:27.074 -07 000000610 INF: FPGA: 'CAMDBLSNAP 406 406 195 195 37486 150' command took 2 ms to send, 1326 ms to get response, and 1335 ms overall
17-03-18 03:29:27.074 -07 000000610 INF: Skipping AutoFocus in Tile 5: adopting Best-Z from the cache: -0.171278
17-03-18 03:29:27.074 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 63.2326 mm, moving Z to -0.17128 mm
17-03-18 03:29:27.074 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 03:29:27.084 -07 000000629 INF: Y Motor: Entering MoveAbsStepped (target = 101172 steps, sync = True, waitForSettling = True)
17-03-18 03:29:27.084 -07 000000629 INF: Y Motor: Moving to 63.2326 mm, started at 62.3955 mm, delta = 0.8371 mm
17-03-18 03:29:27.084 -07 000000629 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:29:27.084 -07 000000430 INF: Z Motor: Entering MoveAbsStepped (DAC = 37416, sync = True, waitForSettling = False)
17-03-18 03:29:27.084 -07 000000430 INF: Z Motor: Moving to -0.171279 mm, started at -0.170798 mm, distance = -0.48 um
17-03-18 03:29:27.084 -07 000000512 INF: FPGA: Recv YRDPOS 127786
17-03-18 03:29:27.094 -07 000000629 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 03:29:27.094 -07 000000629 INF: Y Motor: Encoder = 127786 = motor step 99832.8 = 62.3955 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:29:27.094 -07 000000629 INF: Y Motor: Last commanded position = 62.4026 mm (99844.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 03:29:27.094 -07 000000629 INF: Y Motor: Moving 1339 steps-15
17-03-18 03:29:27.094 -07 000000430 INF: FPGA: Xmit ZDACW 37416\n [Z Motor]
17-03-18 03:29:27.094 -07 000000512 INF: FPGA: Recv ZDACW
17-03-18 03:29:27.104 -07 000000430 INF: FPGA: 'ZDACW 37416' command took 1 ms to send, 0 ms to get response, and 15 ms overall
17-03-18 03:29:27.104 -07 000000430 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:29:27.104 -07 000000561 INF: FPGA: Recv ZDACR 37416
17-03-18 03:29:27.114 -07 000000430 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:29:27.114 -07 000000430 INF: Z Motor: MoveAbsStepped took 26 ms (did NOT wait for settling yet))
17-03-18 03:29:27.114 -07 000000629 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 03:29:27.264 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 372 ms.
17-03-18 03:29:27.264 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 373 ms.
17-03-18 03:29:27.264 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:29:27.264 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 377 ms.
17-03-18 03:29:27.264 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-18 03:29:27.264 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:29:27.274 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 03:29:27.274 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 03:29:27.274 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-18 03:29:27.274 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-18 03:29:27.484 -07 000000512 INF: FPGA: Recv YMVTILE
17-03-18 03:29:27.484 -07 000000629 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 03:29:27.534 -07 000000629 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:29:27.534 -07 000000424 INF: FPGA: Recv YRDPOS 129483
17-03-18 03:29:27.544 -07 000000629 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 03:29:27.544 -07 000000629 INF: Y Motor: Encoder = 129483 = motor step 101158.6 = 63.2241 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:29:27.544 -07 000000629 INF: Y Motor: Position error before settling (table move) = -17 encoder counts (-0.008 mm)
17-03-18 03:29:27.544 -07 000000629 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.837 mm, average velocity = 2.103 mm/sec
17-03-18 03:29:28.494 -07 000000629 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:29:28.494 -07 000000579 INF: FPGA: Recv YRDPOS 129483
17-03-18 03:29:28.504 -07 000000629 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:29:28.504 -07 000000629 INF: Y Motor: Encoder = 129483 = motor step 101158.6 = 63.2241 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:29:28.524 -07 000000629 INF: Y Motor: After move to 63.232609, error = -0.008488, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 03:29:28.524 -07 000000629 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 03:29:28.524 -07 000000629 INF: Y Motor: Moved to 63.2241 after 1446 ms (table move)
17-03-18 03:29:28.534 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.171279 mm (DAC = 37416)
17-03-18 03:29:28.534 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:29:28.534 -07 000000430 INF: FPGA: Recv ZSGSRD 35955
17-03-18 03:29:28.544 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 03:29:28.544 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:29:28.544 -07 000000512 INF: FPGA: Recv ZSGSRD 35954
17-03-18 03:29:28.554 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:29:28.554 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:29:28.554 -07 000000618 INF: FPGA: Recv ZSGSRD 35956
17-03-18 03:29:28.564 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:29:28.564 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:29:28.564 -07 000000629 INF: FPGA: Recv ZSGSRD 35962
17-03-18 03:29:28.574 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:29:28.574 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:29:28.574 -07 000000424 INF: FPGA: Recv ZSGSRD 35953
17-03-18 03:29:28.584 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:29:28.584 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:29:28.584 -07 000000561 INF: FPGA: Recv ZSGSRD 35952
17-03-18 03:29:28.594 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:29:28.594 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:29:28.594 -07 000000618 INF: FPGA: Recv ZSGSRD 35953
17-03-18 03:29:28.604 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:29:28.604 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:29:28.604 -07 000000455 INF: FPGA: Recv ZSGSRD 35943
17-03-18 03:29:28.614 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:29:28.614 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:29:28.614 -07 000000455 INF: FPGA: Recv ZSGSRD 35952
17-03-18 03:29:28.624 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:29:28.624 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:29:28.624 -07 000000561 INF: FPGA: Recv ZSGSRD 35951
17-03-18 03:29:28.634 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:29:28.634 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:29:28.634 -07 000000455 INF: FPGA: Recv ZPIEZORD 31831
17-03-18 03:29:28.644 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:29:28.644 -07 000000610 INF: Z Motor: Piezo is near 48.0 V (nominally 0 to 100 V), expect near 57.1 V, since DAC is at 5.709 V. Piezo Error = -9.1 V.
17-03-18 03:29:28.644 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.3 um, Read 10 ADC samples: Avg = 35953 (-170.4 uncal um), Error = 0.9 uncal um, Median = 35953 (-170.4 uncal um), StdDev = 5 (0.0 uncal um), Range = 19 (0.1 uncal um), Min = 35943 (-170.4 uncal um), Max = 35962 (-170.5 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-18 03:29:28.644 -07 000000610 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35953, posNoise = 9, negNoise = 10
17-03-18 03:29:28.644 -07 000000610 INF: Z Motor: After move to -0.171279, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:29:28.644 -07 000000610 INF: Z Motor: Settle wait time = 1448 ms, measure time = 109 ms (allowed 150 ms), total time = 1557 ms
17-03-18 03:29:28.644 -07 000000610 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-18 03:29:28.694 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1611 ms
17-03-18 03:29:28.694 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 03:29:28.694 -07 000000610 INF: ------------ Scan Snapping tile 5 at Y-position 63.22412109375, Z-position -0.171293051143867. ----------
17-03-18 03:29:28.694 -07 000000610 INF: Cycle	113	Tile	5	Exposure Settings		A	406	G	195	T	195	C	406
17-03-18 03:29:28.694 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37239, sync = True, waitForSettling = True)
17-03-18 03:29:28.694 -07 000000610 INF: Z Motor: Moving to -0.170469 mm, started at -0.171293 mm, distance = 0.82 um
17-03-18 03:29:28.694 -07 000000610 INF: FPGA: Xmit ZDACW 37239\n [Z Motor]
17-03-18 03:29:28.694 -07 000000430 INF: FPGA: Recv ZDACW
17-03-18 03:29:28.704 -07 000000610 INF: FPGA: 'ZDACW 37239' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 03:29:28.704 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:29:28.704 -07 000000455 INF: FPGA: Recv ZDACR 37239
17-03-18 03:29:28.714 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:29:28.714 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 03:29:28.864 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:29:28.864 -07 000000430 INF: FPGA: Recv ZSGSRD 35829
17-03-18 03:29:28.874 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:29:28.874 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:29:28.874 -07 000000561 INF: FPGA: Recv ZSGSRD 35833
17-03-18 03:29:28.884 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:29:28.884 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:29:28.884 -07 000000424 INF: FPGA: Recv ZSGSRD 35831
17-03-18 03:29:28.894 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:29:28.894 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:29:28.894 -07 000000561 INF: FPGA: Recv ZSGSRD 35829
17-03-18 03:29:28.904 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:29:28.904 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:29:28.904 -07 000000430 INF: FPGA: Recv ZSGSRD 35824
17-03-18 03:29:28.914 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:29:28.914 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:29:28.914 -07 000000561 INF: FPGA: Recv ZSGSRD 35819
17-03-18 03:29:28.924 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:29:28.934 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:29:28.934 -07 000000455 INF: FPGA: Recv ZSGSRD 35829
17-03-18 03:29:28.944 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 03:29:28.944 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:29:28.944 -07 000000561 INF: FPGA: Recv ZSGSRD 35821
17-03-18 03:29:28.954 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:29:28.954 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:29:28.954 -07 000000561 INF: FPGA: Recv ZSGSRD 35831
17-03-18 03:29:28.964 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:29:28.964 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:29:28.964 -07 000000424 INF: FPGA: Recv ZSGSRD 35829
17-03-18 03:29:28.974 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:29:28.974 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:29:28.974 -07 000000424 INF: FPGA: Recv ZPIEZORD 31654
17-03-18 03:29:28.984 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:29:28.984 -07 000000610 INF: Z Motor: Piezo is near 47.6 V (nominally 0 to 100 V), expect near 56.8 V, since DAC is at 5.682 V. Piezo Error = -9.2 V.
17-03-18 03:29:28.984 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.5 um, Read 10 ADC samples: Avg = 35828 (-169.6 uncal um), Error = 0.9 uncal um, Median = 35829 (-169.6 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 35819 (-169.6 uncal um), Max = 35833 (-169.6 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-18 03:29:28.984 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35828, posNoise = 5, negNoise = 9
17-03-18 03:29:28.984 -07 000000610 INF: Z Motor: After move to -0.170469, error = -0.000021, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:29:28.984 -07 000000610 INF: Z Motor: MoveAbsStepped took 286 ms)
17-03-18 03:29:28.984 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:29:28.984 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:29:28.984 -07 000000430 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:29:28.984 -07 000000455 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:29:28.984 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 03:29:28.984 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:29:28.984 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 03:29:28.984 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 03:29:28.984 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 03:29:28.984 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 03:29:28.984 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 03:29:28.984 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 03:29:28.994 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 03:29:28.994 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 03:29:28.994 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 03:29:28.994 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 03:29:29.004 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 14 ms.
17-03-18 03:29:29.004 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 18 ms.
17-03-18 03:29:29.004 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms.
17-03-18 03:29:29.004 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 19 ms.
17-03-18 03:29:29.004 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 406 406 195 195 37416 150\n [Camera]
17-03-18 03:29:29.204 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 03:29:29.244 -07 000000424 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 113, FrontChillerTemperature: 4.003063,
17-03-18 03:29:29.614 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 598
17-03-18 03:29:29.614 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 598
17-03-18 03:29:29.614 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:29:29.614 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:29:29.614 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 03:29:29.614 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 598
17-03-18 03:29:29.614 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 598
17-03-18 03:29:29.614 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:29:29.744 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:29:29.744 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) start.
17-03-18 03:29:29.804 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37416 791
17-03-18 03:29:29.954 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning grn on 941
17-03-18 03:29:30.004 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 384 ms.
17-03-18 03:29:30.004 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-18 03:29:30.004 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:29:30.004 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:29:30.004 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-18 03:29:30.114 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) end. Duration was 371 ms.
17-03-18 03:29:30.114 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 371 ms.
17-03-18 03:29:30.114 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:29:30.114 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:29:30.124 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 506 ms.
17-03-18 03:29:30.154 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1136
17-03-18 03:29:30.154 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1136
17-03-18 03:29:30.154 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:29:30.154 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1136
17-03-18 03:29:30.154 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1136
17-03-18 03:29:30.154 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:29:30.154 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:29:30.154 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 03:29:30.164 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:29:30.164 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 1458343128, 0x0, 418435064) start.
17-03-18 03:29:30.344 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP 1329
17-03-18 03:29:30.344 -07 000000455 INF: FPGA: Recv CAMDBLSNAP
17-03-18 03:29:30.344 -07 000000610 INF: FPGA: 'CAMDBLSNAP 406 406 195 195 37416 150' command took 2 ms to send, 1325 ms to get response, and 1335 ms overall
17-03-18 03:29:30.344 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 03:29:30.344 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 6 at Y-position 63.22412109375, Z-Position -0.170490024626147. ------
17-03-18 03:29:30.344 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 03:29:30.344 -07 000000424 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.0626 mm, moving Z to -0.17694 mm
17-03-18 03:29:30.354 -07 000000424 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 03:29:30.354 -07 000000467 INF: FPGA: Recv FOCMRRCUR 
17-03-18 03:29:30.354 -07 000000455 INF: Z Motor: Entering MoveAbsStepped (DAC = 38653, sync = True, waitForSettling = False)
17-03-18 03:29:30.354 -07 000000455 INF: Z Motor: Moving to -0.176942 mm, started at -0.170490 mm, distance = -6.45 um
17-03-18 03:29:30.354 -07 000000606 INF: Y Motor: Entering MoveAbsStepped (target = 102500 steps, sync = True, waitForSettling = True)
17-03-18 03:29:30.354 -07 000000606 INF: Y Motor: Moving to 64.0626 mm, started at 63.2241 mm, delta = 0.8385 mm
17-03-18 03:29:30.364 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:29:30.364 -07 000000455 INF: FPGA: Xmit ZDACW 38653\n [Z Motor]
17-03-18 03:29:30.364 -07 000000467 INF: FPGA: Recv ZDACW
17-03-18 03:29:30.374 -07 000000606 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:29:30.374 -07 000000455 INF: FPGA: 'ZDACW 38653' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-18 03:29:30.374 -07 000000467 INF: FPGA: Recv YRDPOS 129483
17-03-18 03:29:30.384 -07 000000606 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-18 03:29:30.384 -07 000000606 INF: Y Motor: Encoder = 129483 = motor step 101158.6 = 63.2241 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:29:30.384 -07 000000606 INF: Y Motor: Last commanded position = 63.2326 mm (101172.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 03:29:30.384 -07 000000606 INF: Y Motor: Moving 1342 steps-17
17-03-18 03:29:30.384 -07 000000626 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 03:29:30.394 -07 000000455 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:29:30.394 -07 000000467 INF: FPGA: Recv ZDACR 38653
17-03-18 03:29:30.404 -07 000000606 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 03:29:30.404 -07 000000455 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 03:29:30.404 -07 000000455 INF: Z Motor: MoveAbsStepped took 45 ms (did NOT wait for settling yet))
17-03-18 03:29:30.534 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 375 ms.
17-03-18 03:29:30.534 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-18 03:29:30.534 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:29:30.534 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 1458343128, 0x0, 418435064) end. Duration was 373 ms.
17-03-18 03:29:30.534 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 373 ms.
17-03-18 03:29:30.534 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:29:30.544 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 03:29:30.544 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-18 03:29:30.544 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 03:29:30.544 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-18 03:29:30.584 -07 000000561 INF: FPGA: Recv FOCMRRFOC
17-03-18 03:29:30.584 -07 000000626 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 193 ms to get response, and 223 ms overall
17-03-18 03:29:30.784 -07 000000455 INF: FPGA: Recv YMVTILE
17-03-18 03:29:30.784 -07 000000606 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 371 ms to get response, and 400 ms overall
17-03-18 03:29:30.824 -07 000000606 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:29:30.834 -07 000000626 INF: FPGA: Recv YRDPOS 131189
17-03-18 03:29:30.844 -07 000000606 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:29:30.844 -07 000000606 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:29:30.844 -07 000000606 INF: Y Motor: Position error before settling (table move) = -11 encoder counts (-0.005 mm)
17-03-18 03:29:30.844 -07 000000606 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 400 ms, distance = 0.838 mm, average velocity = 2.096 mm/sec
17-03-18 03:29:31.584 -07 000000467 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 03:29:31.584 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 112. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1642, R2=1712, Total=3354. Warn if over 250 bubbles per interval.
17-03-18 03:29:31.794 -07 000000606 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:29:31.794 -07 000000561 INF: FPGA: Recv YRDPOS 131189
17-03-18 03:29:31.804 -07 000000606 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:29:31.804 -07 000000606 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:29:31.824 -07 000000606 INF: Y Motor: After move to 64.062607, error = -0.005478, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 03:29:31.824 -07 000000606 INF: Y Motor: Position error after settling (table move) = -11 encoder counts (-0.005 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 03:29:31.824 -07 000000606 INF: Y Motor: Moved to 64.0571 after 1469 ms (table move)
17-03-18 03:29:31.824 -07 000000424 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176942 mm (DAC = 38653)
17-03-18 03:29:31.824 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:29:31.834 -07 000000461 INF: FPGA: Recv ZSGSRD 36843
17-03-18 03:29:31.834 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-18 03:29:31.834 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:29:31.834 -07 000000606 INF: FPGA: Recv ZSGSRD 36829
17-03-18 03:29:31.844 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 03:29:31.844 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:29:31.844 -07 000000626 INF: FPGA: Recv ZSGSRD 36836
17-03-18 03:29:31.854 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:29:31.854 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:29:31.854 -07 000000561 INF: FPGA: Recv ZSGSRD 36837
17-03-18 03:29:31.864 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:29:31.864 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:29:31.864 -07 000000467 INF: FPGA: Recv ZSGSRD 36834
17-03-18 03:29:31.874 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:29:31.874 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:29:31.874 -07 000000626 INF: FPGA: Recv ZSGSRD 36835
17-03-18 03:29:31.884 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:29:31.884 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:29:31.884 -07 000000455 INF: FPGA: Recv ZSGSRD 36828
17-03-18 03:29:31.894 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:29:31.894 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:29:31.894 -07 000000461 INF: FPGA: Recv ZSGSRD 36826
17-03-18 03:29:31.904 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:29:31.904 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:29:31.904 -07 000000455 INF: FPGA: Recv ZSGSRD 36841
17-03-18 03:29:31.914 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:29:31.914 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:29:31.914 -07 000000455 INF: FPGA: Recv ZSGSRD 36837
17-03-18 03:29:31.924 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:29:31.924 -07 000000424 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:29:31.924 -07 000000461 INF: FPGA: Recv ZPIEZORD 32998
17-03-18 03:29:31.934 -07 000000424 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:29:31.934 -07 000000424 INF: Z Motor: Piezo is near 50.5 V (nominally 0 to 100 V), expect near 59.0 V, since DAC is at 5.898 V. Piezo Error = -8.5 V.
17-03-18 03:29:31.934 -07 000000424 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.9 um, Read 10 ADC samples: Avg = 36835 (-176.1 uncal um), Error = 0.9 uncal um, Median = 36836 (-176.1 uncal um), StdDev = 6 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 36826 (-176.0 uncal um), Max = 36843 (-176.1 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-18 03:29:31.934 -07 000000424 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36835, posNoise = 8, negNoise = 9
17-03-18 03:29:31.934 -07 000000424 INF: Z Motor: After move to -0.176942, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:29:31.934 -07 000000424 INF: Z Motor: Settle wait time = 1473 ms, measure time = 102 ms (allowed 150 ms), total time = 1575 ms
17-03-18 03:29:31.934 -07 000000424 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-18 03:29:31.984 -07 000000424 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1630 ms
17-03-18 03:29:31.984 -07 000000424 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 03:29:31.984 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:29:31.984 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:29:31.984 -07 000000461 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:29:31.984 -07 000000455 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:29:31.984 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 03:29:31.984 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:29:31.984 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 03:29:31.984 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 03:29:31.994 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 03:29:31.994 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 03:29:32.004 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-18 03:29:32.004 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms.
17-03-18 03:29:32.004 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 03:29:32.054 -07 000000455 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 03:29:32.354 -07 000000455 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 03:29:32.354 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 03:29:32.354 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 03:29:32.354 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 675221432, 0x0, 559484976) start.
17-03-18 03:29:32.394 -07 000000455 INF: FPGA: Recv @CAMSNAP 380
17-03-18 03:29:32.394 -07 000000461 INF: FPGA: Recv CAMSNAP
17-03-18 03:29:32.394 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 383 ms to get response, and 385 ms overall
17-03-18 03:29:32.474 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 675221432, 0x0, 559484976) end. Duration was 121 ms.
17-03-18 03:29:32.474 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:29:32.474 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 03:29:32.474 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 124 ms.
17-03-18 03:29:32.494 -07 000000455 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 03:29:32.494 -07 000000424 INF: Autofocus start
17-03-18 03:29:32.494 -07 000000424 INF: MeasureProfile start
17-03-18 03:29:32.494 -07 000000461 INF: FPGA: Recv FOCMRRCUR 
17-03-18 03:29:32.504 -07 000000455 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 03:29:32.504 -07 000000455 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 03:29:32.514 -07 000000424 INF: MeasureProfile done
17-03-18 03:29:32.514 -07 000000424 INF: X=16  Z correction [um]=0.01042744
17-03-18 03:29:32.514 -07 000000424 INF: Autofocus finished
17-03-18 03:29:32.704 -07 000000461 INF: FPGA: Recv FOCMRRIMG
17-03-18 03:29:32.704 -07 000000455 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 03:29:32.704 -07 000000610 INF: ------------ Scan Snapping tile 6 at Y-position 64.05712890625, Z-position -0.1769592062529. ----------
17-03-18 03:29:32.704 -07 000000610 INF: Cycle	113	Tile	6	Exposure Settings		A	406	G	195	T	195	C	406
17-03-18 03:29:32.714 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37168, sync = True, waitForSettling = True)
17-03-18 03:29:32.714 -07 000000610 INF: Z Motor: Moving to -0.170144 mm, started at -0.176959 mm, distance = 6.82 um
17-03-18 03:29:32.714 -07 000000610 INF: FPGA: Xmit ZDACW 37168\n [Z Motor]
17-03-18 03:29:32.714 -07 000000424 INF: FPGA: Recv ZDACW
17-03-18 03:29:32.724 -07 000000610 INF: FPGA: 'ZDACW 37168' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:29:32.724 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:29:32.724 -07 000000424 INF: FPGA: Recv ZDACR 37168
17-03-18 03:29:32.734 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:29:32.734 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 03:29:32.884 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:29:32.884 -07 000000461 INF: FPGA: Recv ZSGSRD 35776
17-03-18 03:29:32.894 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:29:32.894 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:29:32.894 -07 000000424 INF: FPGA: Recv ZSGSRD 35775
17-03-18 03:29:32.904 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:29:32.904 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:29:32.904 -07 000000455 INF: FPGA: Recv ZSGSRD 35775
17-03-18 03:29:32.914 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:29:32.914 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:29:32.914 -07 000000461 INF: FPGA: Recv ZSGSRD 35777
17-03-18 03:29:32.924 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:29:32.924 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:29:32.924 -07 000000455 INF: FPGA: Recv ZSGSRD 35771
17-03-18 03:29:32.934 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:29:32.934 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:29:32.934 -07 000000461 INF: FPGA: Recv ZSGSRD 35777
17-03-18 03:29:32.944 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:29:32.944 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:29:32.944 -07 000000461 INF: FPGA: Recv ZSGSRD 35778
17-03-18 03:29:32.954 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:29:32.954 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:29:32.954 -07 000000461 INF: FPGA: Recv ZSGSRD 35774
17-03-18 03:29:32.964 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:29:32.964 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:29:32.964 -07 000000461 INF: FPGA: Recv ZSGSRD 35776
17-03-18 03:29:32.974 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:29:32.974 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:29:32.974 -07 000000455 INF: FPGA: Recv ZSGSRD 35777
17-03-18 03:29:32.984 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:29:32.984 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:29:32.984 -07 000000424 INF: FPGA: Recv ZPIEZORD 31617
17-03-18 03:29:32.994 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:29:32.994 -07 000000610 INF: Z Motor: Piezo is near 47.5 V (nominally 0 to 100 V), expect near 56.7 V, since DAC is at 5.671 V. Piezo Error = -9.2 V.
17-03-18 03:29:32.994 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.1 um, Read 10 ADC samples: Avg = 35776 (-169.3 uncal um), Error = 0.9 uncal um, Median = 35776 (-169.3 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 35771 (-169.2 uncal um), Max = 35778 (-169.3 uncal um), Pos Noise = 2 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 03:29:32.994 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35776, posNoise = 2, negNoise = 5
17-03-18 03:29:32.994 -07 000000610 INF: Z Motor: After move to -0.170144, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:29:32.994 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 03:29:32.994 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:29:32.994 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:29:32.994 -07 000000461 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:29:32.994 -07 000000455 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 03:29:32.994 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:29:32.994 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:29:32.994 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 03:29:32.994 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 03:29:32.994 -07 000000444 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 03:29:32.994 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 03:29:32.994 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 03:29:32.994 -07 000000444 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 03:29:32.994 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 03:29:32.994 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 03:29:33.004 -07 000000444 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 03:29:33.004 -07 000000444 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 03:29:33.004 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 03:29:33.004 -07 000000455 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 03:29:33.004 -07 000000444 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 03:29:33.004 -07 000000444 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 03:29:33.014 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 406 406 195 195 37345 150\n [Camera]
17-03-18 03:29:33.214 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 03:29:33.624 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 598
17-03-18 03:29:33.624 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 598
17-03-18 03:29:33.624 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:29:33.624 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:29:33.624 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 03:29:33.624 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 598
17-03-18 03:29:33.624 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 598
17-03-18 03:29:33.624 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:29:33.624 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:29:33.624 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start.
17-03-18 03:29:33.814 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37345 791
17-03-18 03:29:33.964 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP turning grn on 941
17-03-18 03:29:34.004 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 378 ms.
17-03-18 03:29:34.004 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-18 03:29:34.004 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:29:34.004 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:29:34.004 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-18 03:29:34.004 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 380 ms.
17-03-18 03:29:34.004 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 381 ms.
17-03-18 03:29:34.004 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:29:34.014 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 03:29:34.014 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-18 03:29:34.154 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1136
17-03-18 03:29:34.154 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1136
17-03-18 03:29:34.154 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:29:34.274 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1136
17-03-18 03:29:34.274 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1136
17-03-18 03:29:34.274 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:29:34.274 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:29:34.274 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) start.
17-03-18 03:29:34.274 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:29:34.274 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 03:29:34.344 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP 1328
17-03-18 03:29:34.344 -07 000000501 INF: FPGA: Recv CAMDBLSNAP
17-03-18 03:29:34.354 -07 000000610 INF: FPGA: 'CAMDBLSNAP 406 406 195 195 37345 150' command took 2 ms to send, 1329 ms to get response, and 1335 ms overall
17-03-18 03:29:34.354 -07 000000610 INF: Skipping AutoFocus in Tile 7: adopting Best-Z from the cache: -0.170601
17-03-18 03:29:34.354 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.8926 mm, moving Z to -0.17060 mm
17-03-18 03:29:34.354 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 03:29:34.354 -07 000000461 INF: Y Motor: Entering MoveAbsStepped (target = 103828 steps, sync = True, waitForSettling = True)
17-03-18 03:29:34.354 -07 000000461 INF: Y Motor: Moving to 64.8926 mm, started at 64.0571 mm, delta = 0.8355 mm
17-03-18 03:29:34.354 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:29:34.354 -07 000000501 INF: Z Motor: Entering MoveAbsStepped (DAC = 37268, sync = True, waitForSettling = False)
17-03-18 03:29:34.354 -07 000000501 INF: Z Motor: Moving to -0.170602 mm, started at -0.170156 mm, distance = -0.45 um
17-03-18 03:29:34.354 -07 000000424 INF: FPGA: Recv YRDPOS 131189
17-03-18 03:29:34.364 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 03:29:34.364 -07 000000461 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:29:34.364 -07 000000461 INF: Y Motor: Last commanded position = 64.0626 mm (102500.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 03:29:34.364 -07 000000461 INF: Y Motor: Moving 1337 steps-11
17-03-18 03:29:34.364 -07 000000501 INF: FPGA: Xmit ZDACW 37268\n [Z Motor]
17-03-18 03:29:34.364 -07 000000462 INF: FPGA: Recv ZDACW
17-03-18 03:29:34.374 -07 000000501 INF: FPGA: 'ZDACW 37268' command took 1 ms to send, 0 ms to get response, and 14 ms overall
17-03-18 03:29:34.374 -07 000000501 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:29:34.374 -07 000000444 INF: FPGA: Recv ZDACR 37268
17-03-18 03:29:34.384 -07 000000501 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:29:34.384 -07 000000501 INF: Z Motor: MoveAbsStepped took 24 ms (did NOT wait for settling yet))
17-03-18 03:29:34.384 -07 000000461 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 03:29:34.664 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 390 ms.
17-03-18 03:29:34.664 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-18 03:29:34.664 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:29:34.674 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) end. Duration was 396 ms.
17-03-18 03:29:34.674 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 03:29:34.674 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:29:34.674 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 03:29:34.674 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:29:34.674 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 516 ms.
17-03-18 03:29:34.684 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 406 ms.
17-03-18 03:29:34.694 -07 000000501 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 113, FrontChillerTemperature: 4.000345,
17-03-18 03:29:34.754 -07 000000501 INF: FPGA: Recv YMVTILE
17-03-18 03:29:34.754 -07 000000461 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 398 ms overall
17-03-18 03:29:34.804 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:29:34.804 -07 000000501 INF: FPGA: Recv YRDPOS 132872
17-03-18 03:29:34.814 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 03:29:34.814 -07 000000461 INF: Y Motor: Encoder = 132872 = motor step 103806.3 = 64.8789 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:29:34.814 -07 000000461 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-18 03:29:34.814 -07 000000461 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.835 mm, average velocity = 2.099 mm/sec
17-03-18 03:29:35.764 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:29:35.764 -07 000000501 INF: FPGA: Recv YRDPOS 132872
17-03-18 03:29:35.774 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:29:35.774 -07 000000461 INF: Y Motor: Encoder = 132872 = motor step 103806.3 = 64.8789 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:29:35.794 -07 000000461 INF: Y Motor: After move to 64.892609, error = -0.013702, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 03:29:35.794 -07 000000461 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 03:29:35.794 -07 000000461 INF: Y Motor: Moved to 64.8789 after 1444 ms (table move)
17-03-18 03:29:35.804 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.170602 mm (DAC = 37268)
17-03-18 03:29:35.804 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:29:35.804 -07 000000501 INF: FPGA: Recv ZSGSRD 35847
17-03-18 03:29:35.814 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 03:29:35.814 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:29:35.814 -07 000000501 INF: FPGA: Recv ZSGSRD 35848
17-03-18 03:29:35.824 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:29:35.824 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:29:35.824 -07 000000461 INF: FPGA: Recv ZSGSRD 35842
17-03-18 03:29:35.834 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:29:35.834 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:29:35.834 -07 000000501 INF: FPGA: Recv ZSGSRD 35849
17-03-18 03:29:35.844 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:29:35.844 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:29:35.844 -07 000000461 INF: FPGA: Recv ZSGSRD 35851
17-03-18 03:29:35.854 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:29:35.854 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:29:35.854 -07 000000461 INF: FPGA: Recv ZSGSRD 35845
17-03-18 03:29:35.864 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:29:35.864 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:29:35.864 -07 000000461 INF: FPGA: Recv ZSGSRD 35845
17-03-18 03:29:35.874 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:29:35.874 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:29:35.874 -07 000000461 INF: FPGA: Recv ZSGSRD 35841
17-03-18 03:29:35.884 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:29:35.884 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:29:35.884 -07 000000461 INF: FPGA: Recv ZSGSRD 35845
17-03-18 03:29:35.894 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:29:35.894 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:29:35.894 -07 000000461 INF: FPGA: Recv ZSGSRD 35854
17-03-18 03:29:35.904 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:29:35.904 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:29:35.904 -07 000000461 INF: FPGA: Recv ZPIEZORD 31734
17-03-18 03:29:35.914 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:29:35.914 -07 000000610 INF: Z Motor: Piezo is near 47.8 V (nominally 0 to 100 V), expect near 56.9 V, since DAC is at 5.687 V. Piezo Error = -9.1 V.
17-03-18 03:29:35.914 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.6 um, Read 10 ADC samples: Avg = 35847 (-169.7 uncal um), Error = 0.9 uncal um, Median = 35846 (-169.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 35841 (-169.7 uncal um), Max = 35854 (-169.8 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 03:29:35.914 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35847, posNoise = 7, negNoise = 6
17-03-18 03:29:35.914 -07 000000610 INF: Z Motor: After move to -0.170602, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:29:35.914 -07 000000610 INF: Z Motor: Settle wait time = 1447 ms, measure time = 108 ms (allowed 150 ms), total time = 1555 ms
17-03-18 03:29:35.914 -07 000000610 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-18 03:29:35.964 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1607 ms
17-03-18 03:29:35.964 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 03:29:35.964 -07 000000610 INF: ------------ Scan Snapping tile 7 at Y-position 64.87890625, Z-position -0.17061208465684. ----------
17-03-18 03:29:35.964 -07 000000610 INF: Cycle	113	Tile	7	Exposure Settings		A	406	G	195	T	195	C	406
17-03-18 03:29:35.964 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37091, sync = True, waitForSettling = True)
17-03-18 03:29:35.964 -07 000000610 INF: Z Motor: Moving to -0.169792 mm, started at -0.170612 mm, distance = 0.82 um
17-03-18 03:29:35.964 -07 000000610 INF: FPGA: Xmit ZDACW 37091\n [Z Motor]
17-03-18 03:29:35.964 -07 000000461 INF: FPGA: Recv ZDACW
17-03-18 03:29:35.974 -07 000000610 INF: FPGA: 'ZDACW 37091' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 03:29:35.974 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:29:35.974 -07 000000618 INF: FPGA: Recv ZDACR 37091
17-03-18 03:29:35.984 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:29:35.984 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 03:29:36.134 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:29:36.134 -07 000000618 INF: FPGA: Recv ZSGSRD 35723
17-03-18 03:29:36.144 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:29:36.144 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:29:36.144 -07 000000618 INF: FPGA: Recv ZSGSRD 35723
17-03-18 03:29:36.154 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:29:36.154 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:29:36.154 -07 000000501 INF: FPGA: Recv ZSGSRD 35723
17-03-18 03:29:36.164 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:29:36.164 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:29:36.164 -07 000000501 INF: FPGA: Recv ZSGSRD 35718
17-03-18 03:29:36.174 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:29:36.174 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:29:36.174 -07 000000618 INF: FPGA: Recv ZSGSRD 35724
17-03-18 03:29:36.184 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:29:36.184 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:29:36.184 -07 000000501 INF: FPGA: Recv ZSGSRD 35718
17-03-18 03:29:36.194 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:29:36.194 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:29:36.194 -07 000000501 INF: FPGA: Recv ZSGSRD 35722
17-03-18 03:29:36.204 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:29:36.204 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:29:36.204 -07 000000501 INF: FPGA: Recv ZSGSRD 35722
17-03-18 03:29:36.214 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:29:36.214 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:29:36.214 -07 000000501 INF: FPGA: Recv ZSGSRD 35715
17-03-18 03:29:36.224 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:29:36.224 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:29:36.224 -07 000000501 INF: FPGA: Recv ZSGSRD 35718
17-03-18 03:29:36.234 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:29:36.234 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:29:36.234 -07 000000501 INF: FPGA: Recv ZPIEZORD 31551
17-03-18 03:29:36.244 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:29:36.244 -07 000000610 INF: Z Motor: Piezo is near 47.4 V (nominally 0 to 100 V), expect near 56.6 V, since DAC is at 5.660 V. Piezo Error = -9.2 V.
17-03-18 03:29:36.244 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.8 um, Read 10 ADC samples: Avg = 35721 (-168.9 uncal um), Error = 0.9 uncal um, Median = 35722 (-168.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35715 (-168.9 uncal um), Max = 35724 (-168.9 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 03:29:36.244 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35721, posNoise = 3, negNoise = 6
17-03-18 03:29:36.244 -07 000000610 INF: Z Motor: After move to -0.169792, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:29:36.244 -07 000000610 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-18 03:29:36.244 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:29:36.244 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:29:36.244 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:29:36.244 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 03:29:36.244 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:29:36.244 -07 000000461 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:29:36.244 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 03:29:36.244 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 03:29:36.244 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 03:29:36.244 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 03:29:36.244 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 03:29:36.244 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 03:29:36.244 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 03:29:36.244 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 03:29:36.254 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 03:29:36.254 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 03:29:36.254 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 03:29:36.254 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 03:29:36.264 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 11 ms.
17-03-18 03:29:36.264 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 03:29:36.264 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 406 406 195 195 37268 150\n [Camera]
17-03-18 03:29:36.464 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 03:29:36.584 -07 000000501 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 03:29:36.584 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 112. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1642, R2=1712, Total=3354. Warn if over 250 bubbles per interval.
17-03-18 03:29:36.874 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 598
17-03-18 03:29:36.874 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 598
17-03-18 03:29:36.874 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:29:36.874 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 598
17-03-18 03:29:36.874 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 598
17-03-18 03:29:36.874 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:29:36.874 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 1458343128, 0x0, 391868352) start.
17-03-18 03:29:37.254 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 1458343128, 0x0, 391868352) end. Duration was 372 ms.
17-03-18 03:29:37.254 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 372 ms.
17-03-18 03:29:37.254 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:29:37.254 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:29:37.254 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-18 03:29:37.994 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:29:38.004 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:29:38.004 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 03:29:38.384 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 382 ms.
17-03-18 03:29:38.384 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-18 03:29:38.384 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:29:38.384 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-18 03:29:38.394 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 03:29:38.414 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37268 791
17-03-18 03:29:38.414 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP turning grn on 941
17-03-18 03:29:38.414 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1136
17-03-18 03:29:38.414 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1136
17-03-18 03:29:38.414 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP 1329
17-03-18 03:29:38.414 -07 000000579 INF: FPGA: Recv CAMDBLSNAP
17-03-18 03:29:38.414 -07 000000610 INF: FPGA: 'CAMDBLSNAP 406 406 195 195 37268 150' command took 3 ms to send, 2141 ms to get response, and 2148 ms overall
17-03-18 03:29:38.414 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1136
17-03-18 03:29:38.414 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1136
17-03-18 03:29:38.414 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:29:38.414 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:29:38.424 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) start.
17-03-18 03:29:38.514 -07 000000610 INF: Skipping AutoFocus in Tile 8: adopting Best-Z from the cache: -0.170233
17-03-18 03:29:38.514 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 65.7226 mm, moving Z to -0.17023 mm
17-03-18 03:29:38.514 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 03:29:38.824 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) end. Duration was 402 ms.
17-03-18 03:29:38.824 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 03:29:38.824 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:29:38.824 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-18 03:29:38.824 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 413 ms.
17-03-18 03:29:38.834 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:29:38.834 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:29:38.834 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 03:29:39.244 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 407 ms.
17-03-18 03:29:39.244 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 408 ms.
17-03-18 03:29:39.244 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:29:39.244 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-18 03:29:39.254 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 417 ms.
17-03-18 03:29:39.264 -07 000000579 INF: Y Motor: Entering MoveAbsStepped (target = 105156 steps, sync = True, waitForSettling = True)
17-03-18 03:29:39.264 -07 000000579 INF: Y Motor: Moving to 65.7226 mm, started at 64.8789 mm, delta = 0.8437 mm
17-03-18 03:29:39.264 -07 000000579 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:29:40.124 -07 000000512 INF: FPGA: Recv YRDPOS 132872
17-03-18 03:29:40.124 -07 000000579 INF: FPGA: 'YRDPOS' command took 0 ms to send, 850 ms to get response, and 855 ms overall
17-03-18 03:29:40.124 -07 000000579 INF: Y Motor: Encoder = 132872 = motor step 103806.3 = 64.8789 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:29:40.124 -07 000000579 INF: Y Motor: Last commanded position = 64.8926 mm (103828.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 03:29:40.124 -07 000000579 INF: Y Motor: Moving 1350 steps-28
17-03-18 03:29:40.124 -07 000000579 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 03:29:40.124 -07 000000512 INF: Z Motor: Entering MoveAbsStepped (DAC = 37187, sync = True, waitForSettling = False)
17-03-18 03:29:40.124 -07 000000512 INF: Z Motor: Moving to -0.170231 mm, started at -0.169803 mm, distance = -0.43 um
17-03-18 03:29:40.134 -07 000000512 INF: FPGA: Xmit ZDACW 37187\n [Z Motor]
17-03-18 03:29:41.184 -07 000000467 INF: FPGA: Recv ZDACW
17-03-18 03:29:41.184 -07 000000467 INF: FPGA: Recv YMVTILE
17-03-18 03:29:41.184 -07 000000512 INF: FPGA: 'ZDACW 37187' command took 0 ms to send, 1040 ms to get response, and 1058 ms overall
17-03-18 03:29:41.184 -07 000000579 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 1050 ms to get response, and 1058 ms overall
17-03-18 03:29:41.304 -07 000000512 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:29:41.304 -07 000000467 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 113, FrontChillerTemperature: 4.000345,
17-03-18 03:29:41.304 -07 000000467 INF: FPGA: Recv ZDACR 37187
17-03-18 03:29:41.314 -07 000000512 INF: FPGA: 'ZDACR' command took 124 ms to send, 0 ms to get response, and 129 ms overall
17-03-18 03:29:41.314 -07 000000512 INF: Z Motor: MoveAbsStepped took 1187 ms (did NOT wait for settling yet))
17-03-18 03:29:41.354 -07 000000579 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:29:41.364 -07 000000626 INF: FPGA: Recv YRDPOS 134583
17-03-18 03:29:41.364 -07 000000579 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 03:29:41.364 -07 000000579 INF: Y Motor: Encoder = 134583 = motor step 105143.0 = 65.7144 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:29:41.364 -07 000000579 INF: Y Motor: Position error before settling (table move) = -17 encoder counts (-0.008 mm)
17-03-18 03:29:41.364 -07 000000579 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 1183 ms, distance = 0.844 mm, average velocity = 0.713 mm/sec
17-03-18 03:29:41.574 -07 000000467 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 03:29:41.574 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 112. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1642, R2=1712, Total=3354. Warn if over 250 bubbles per interval.
17-03-18 03:29:42.314 -07 000000579 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:29:42.314 -07 000000430 INF: FPGA: Recv YRDPOS 134583
17-03-18 03:29:42.324 -07 000000579 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:29:42.324 -07 000000579 INF: Y Motor: Encoder = 134583 = motor step 105143.0 = 65.7144 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:29:42.354 -07 000000579 INF: Y Motor: After move to 65.722610, error = -0.008255, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 03:29:42.354 -07 000000579 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 03:29:42.354 -07 000000579 INF: Y Motor: Moved to 65.7144 after 3087 ms (table move)
17-03-18 03:29:42.354 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.170231 mm (DAC = 37187)
17-03-18 03:29:42.354 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:29:42.354 -07 000000606 INF: FPGA: Recv ZSGSRD 35789
17-03-18 03:29:42.364 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 03:29:42.364 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:29:42.364 -07 000000467 INF: FPGA: Recv ZSGSRD 35791
17-03-18 03:29:42.374 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:29:42.374 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:29:42.374 -07 000000467 INF: FPGA: Recv ZSGSRD 35794
17-03-18 03:29:42.384 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:29:42.384 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:29:42.384 -07 000000561 INF: FPGA: Recv ZSGSRD 35783
17-03-18 03:29:42.394 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:29:42.394 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:29:42.394 -07 000000467 INF: FPGA: Recv ZSGSRD 35796
17-03-18 03:29:42.404 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:29:42.404 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:29:42.404 -07 000000561 INF: FPGA: Recv ZSGSRD 35793
17-03-18 03:29:42.414 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:29:42.414 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:29:42.414 -07 000000579 INF: FPGA: Recv ZSGSRD 35789
17-03-18 03:29:42.424 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:29:42.424 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:29:42.424 -07 000000430 INF: FPGA: Recv ZSGSRD 35790
17-03-18 03:29:42.434 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:29:42.434 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:29:42.434 -07 000000579 INF: FPGA: Recv ZSGSRD 35785
17-03-18 03:29:42.444 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:29:42.444 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:29:42.444 -07 000000512 INF: FPGA: Recv ZSGSRD 35790
17-03-18 03:29:42.454 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:29:42.454 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:29:42.454 -07 000000467 INF: FPGA: Recv ZPIEZORD 31700
17-03-18 03:29:42.464 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:29:42.464 -07 000000610 INF: Z Motor: Piezo is near 47.7 V (nominally 0 to 100 V), expect near 56.7 V, since DAC is at 5.674 V. Piezo Error = -9.0 V.
17-03-18 03:29:42.464 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.2 um, Read 10 ADC samples: Avg = 35790 (-169.4 uncal um), Error = 0.9 uncal um, Median = 35790 (-169.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 35783 (-169.3 uncal um), Max = 35796 (-169.4 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 03:29:42.464 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35790, posNoise = 6, negNoise = 7
17-03-18 03:29:42.464 -07 000000610 INF: Z Motor: After move to -0.170231, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:29:42.464 -07 000000610 INF: Z Motor: Settle wait time = 2232 ms, measure time = 106 ms (allowed 150 ms), total time = 2338 ms
17-03-18 03:29:42.464 -07 000000610 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-18 03:29:42.514 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 3996 ms
17-03-18 03:29:42.514 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 03:29:42.514 -07 000000610 INF: ------------ Scan Snapping tile 8 at Y-position 65.71435546875, Z-position -0.17024590456476. ----------
17-03-18 03:29:42.514 -07 000000610 INF: Cycle	113	Tile	8	Exposure Settings		A	406	G	195	T	195	C	406
17-03-18 03:29:42.514 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37011, sync = True, waitForSettling = True)
17-03-18 03:29:42.514 -07 000000610 INF: Z Motor: Moving to -0.169425 mm, started at -0.170246 mm, distance = 0.82 um
17-03-18 03:29:42.514 -07 000000610 INF: FPGA: Xmit ZDACW 37011\n [Z Motor]
17-03-18 03:29:42.514 -07 000000579 INF: FPGA: Recv ZDACW
17-03-18 03:29:42.524 -07 000000610 INF: FPGA: 'ZDACW 37011' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 03:29:42.524 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:29:42.524 -07 000000626 INF: FPGA: Recv ZDACR 37011
17-03-18 03:29:42.534 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:29:42.534 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 03:29:42.684 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:29:42.684 -07 000000430 INF: FPGA: Recv ZSGSRD 35666
17-03-18 03:29:42.694 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:29:42.694 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:29:42.694 -07 000000561 INF: FPGA: Recv ZSGSRD 35664
17-03-18 03:29:42.704 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:29:42.704 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:29:42.704 -07 000000579 INF: FPGA: Recv ZSGSRD 35661
17-03-18 03:29:42.714 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:29:42.714 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:29:42.714 -07 000000561 INF: FPGA: Recv ZSGSRD 35657
17-03-18 03:29:42.724 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:29:42.724 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:29:42.724 -07 000000430 INF: FPGA: Recv ZSGSRD 35665
17-03-18 03:29:42.734 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:29:42.734 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:29:42.734 -07 000000430 INF: FPGA: Recv ZSGSRD 35666
17-03-18 03:29:42.744 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:29:42.744 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:29:42.744 -07 000000430 INF: FPGA: Recv ZSGSRD 35662
17-03-18 03:29:42.754 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:29:42.754 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:29:42.754 -07 000000430 INF: FPGA: Recv ZSGSRD 35660
17-03-18 03:29:42.764 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:29:42.764 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:29:42.764 -07 000000467 INF: FPGA: Recv ZSGSRD 35658
17-03-18 03:29:42.774 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:29:42.774 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:29:42.774 -07 000000467 INF: FPGA: Recv ZSGSRD 35667
17-03-18 03:29:42.784 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:29:42.784 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:29:42.784 -07 000000467 INF: FPGA: Recv ZPIEZORD 31462
17-03-18 03:29:42.794 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:29:42.794 -07 000000610 INF: Z Motor: Piezo is near 47.2 V (nominally 0 to 100 V), expect near 56.5 V, since DAC is at 5.648 V. Piezo Error = -9.3 V.
17-03-18 03:29:42.794 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.4 um, Read 10 ADC samples: Avg = 35663 (-168.6 uncal um), Error = 0.9 uncal um, Median = 35663 (-168.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35657 (-168.5 uncal um), Max = 35667 (-168.6 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 03:29:42.794 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35663, posNoise = 4, negNoise = 6
17-03-18 03:29:42.794 -07 000000610 INF: Z Motor: After move to -0.169425, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:29:42.794 -07 000000610 INF: Z Motor: MoveAbsStepped took 274 ms)
17-03-18 03:29:42.794 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:29:42.794 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:29:42.794 -07 000000467 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:29:42.794 -07 000000430 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:29:42.794 -07 000000430 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 03:29:42.794 -07 000000467 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 03:29:42.794 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:29:42.794 -07 000000430 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 03:29:42.794 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 03:29:42.794 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 03:29:42.794 -07 000000430 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 03:29:42.794 -07 000000430 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 03:29:42.804 -07 000000430 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 03:29:42.804 -07 000000430 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 03:29:42.804 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-18 03:29:42.804 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 03:29:42.814 -07 000000430 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-18 03:29:42.814 -07 000000430 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 03:29:42.814 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 03:29:42.814 -07 000000467 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 03:29:42.824 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 406 406 195 195 37187 150\n [Camera]
17-03-18 03:29:43.024 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 03:29:43.434 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 600
17-03-18 03:29:43.434 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 600
17-03-18 03:29:43.434 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:29:43.434 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 600
17-03-18 03:29:43.434 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 600
17-03-18 03:29:43.434 -07 000000430 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:29:43.434 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:29:43.434 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 03:29:43.434 -07 000000430 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:29:43.434 -07 000000430 INF: Camera: sBCa_ReadImage(785074704, 1458343128, 0x0, 418435064) start.
17-03-18 03:29:43.834 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 394 ms.
17-03-18 03:29:43.834 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-18 03:29:43.834 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:29:43.834 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:29:43.834 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 03:29:43.834 -07 000000430 INF: Camera: sBCa_ReadImage(785074704, 1458343128, 0x0, 418435064) end. Duration was 396 ms.
17-03-18 03:29:43.834 -07 000000430 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 03:29:43.834 -07 000000430 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:29:43.844 -07 000000430 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:29:43.844 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37187 791
17-03-18 03:29:43.844 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP turning grn on 941
17-03-18 03:29:43.844 -07 000000430 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-18 03:29:43.964 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1136
17-03-18 03:29:43.964 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1136
17-03-18 03:29:43.964 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:29:43.964 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:29:43.964 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 03:29:43.974 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1136
17-03-18 03:29:43.974 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1136
17-03-18 03:29:43.974 -07 000000430 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:29:43.974 -07 000000430 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:29:43.974 -07 000000430 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 03:29:44.374 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 407 ms.
17-03-18 03:29:44.374 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-18 03:29:44.374 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:29:44.374 -07 000000430 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 406 ms.
17-03-18 03:29:44.374 -07 000000430 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 407 ms.
17-03-18 03:29:44.374 -07 000000430 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:29:44.384 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:29:44.384 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-18 03:29:44.384 -07 000000430 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:29:44.384 -07 000000430 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 417 ms.
17-03-18 03:29:44.394 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP 1328
17-03-18 03:29:44.394 -07 000000467 INF: FPGA: Recv CAMDBLSNAP
17-03-18 03:29:44.394 -07 000000610 INF: FPGA: 'CAMDBLSNAP 406 406 195 195 37187 150' command took 2 ms to send, 1560 ms to get response, and 1568 ms overall
17-03-18 03:29:44.394 -07 000000610 INF: Skipping AutoFocus in Tile 9: adopting Best-Z from the cache: -0.169909
17-03-18 03:29:44.394 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 66.5526 mm, moving Z to -0.16991 mm
17-03-18 03:29:44.394 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 03:29:44.394 -07 000000467 INF: Y Motor: Entering MoveAbsStepped (target = 106484 steps, sync = True, waitForSettling = True)
17-03-18 03:29:44.394 -07 000000467 INF: Y Motor: Moving to 66.5526 mm, started at 65.7144 mm, delta = 0.8382 mm
17-03-18 03:29:44.394 -07 000000467 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:29:44.394 -07 000000424 INF: Z Motor: Entering MoveAbsStepped (DAC = 37117, sync = True, waitForSettling = False)
17-03-18 03:29:44.394 -07 000000424 INF: Z Motor: Moving to -0.169911 mm, started at -0.169430 mm, distance = -0.48 um
17-03-18 03:29:44.394 -07 000000462 INF: FPGA: Recv YRDPOS 134583
17-03-18 03:29:44.404 -07 000000467 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 03:29:44.404 -07 000000467 INF: Y Motor: Encoder = 134583 = motor step 105143.0 = 65.7144 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:29:44.404 -07 000000467 INF: Y Motor: Last commanded position = 65.7226 mm (105156.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 03:29:44.404 -07 000000467 INF: Y Motor: Moving 1341 steps-17
17-03-18 03:29:44.404 -07 000000424 INF: FPGA: Xmit ZDACW 37117\n [Z Motor]
17-03-18 03:29:44.404 -07 000000430 INF: FPGA: Recv ZDACW
17-03-18 03:29:44.414 -07 000000467 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 03:29:44.414 -07 000000424 INF: FPGA: 'ZDACW 37117' command took 1 ms to send, 0 ms to get response, and 14 ms overall
17-03-18 03:29:44.424 -07 000000424 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:29:44.424 -07 000000591 INF: FPGA: Recv ZDACR 37117
17-03-18 03:29:44.434 -07 000000424 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 03:29:44.434 -07 000000424 INF: Z Motor: MoveAbsStepped took 34 ms (did NOT wait for settling yet))
17-03-18 03:29:44.784 -07 000000430 INF: FPGA: Recv YMVTILE
17-03-18 03:29:44.784 -07 000000467 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-18 03:29:44.834 -07 000000467 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:29:44.834 -07 000000591 INF: FPGA: Recv YRDPOS 136272
17-03-18 03:29:44.844 -07 000000467 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 03:29:44.844 -07 000000467 INF: Y Motor: Encoder = 136272 = motor step 106462.5 = 66.5391 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:29:44.844 -07 000000467 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-18 03:29:44.844 -07 000000467 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 387 ms, distance = 0.838 mm, average velocity = 2.166 mm/sec
17-03-18 03:29:45.794 -07 000000467 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:29:45.794 -07 000000591 INF: FPGA: Recv YRDPOS 136272
17-03-18 03:29:45.804 -07 000000467 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:29:45.804 -07 000000467 INF: Y Motor: Encoder = 136272 = motor step 106462.5 = 66.5391 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:29:45.834 -07 000000467 INF: Y Motor: After move to 66.552605, error = -0.013542, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 03:29:45.834 -07 000000467 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 03:29:45.834 -07 000000467 INF: Y Motor: Moved to 66.5391 after 1440 ms (table move)
17-03-18 03:29:45.834 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.169911 mm (DAC = 37117)
17-03-18 03:29:45.834 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:29:45.844 -07 000000591 INF: FPGA: Recv ZSGSRD 35744
17-03-18 03:29:45.844 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-18 03:29:45.844 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:29:45.844 -07 000000455 INF: FPGA: Recv ZSGSRD 35738
17-03-18 03:29:45.854 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 03:29:45.854 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:29:45.854 -07 000000424 INF: FPGA: Recv ZSGSRD 35743
17-03-18 03:29:45.864 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:29:45.864 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:29:45.864 -07 000000455 INF: FPGA: Recv ZSGSRD 35745
17-03-18 03:29:45.874 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:29:45.874 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:29:45.874 -07 000000462 INF: FPGA: Recv ZSGSRD 35740
17-03-18 03:29:45.884 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:29:45.884 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:29:45.884 -07 000000591 INF: FPGA: Recv ZSGSRD 35736
17-03-18 03:29:45.894 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:29:45.894 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:29:45.894 -07 000000467 INF: FPGA: Recv ZSGSRD 35743
17-03-18 03:29:45.904 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:29:45.904 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:29:45.904 -07 000000455 INF: FPGA: Recv ZSGSRD 35738
17-03-18 03:29:45.914 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:29:45.914 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:29:45.914 -07 000000467 INF: FPGA: Recv ZSGSRD 35735
17-03-18 03:29:45.924 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:29:45.924 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:29:45.924 -07 000000455 INF: FPGA: Recv ZSGSRD 35737
17-03-18 03:29:45.934 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:29:45.934 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:29:45.934 -07 000000467 INF: FPGA: Recv ZPIEZORD 31584
17-03-18 03:29:45.944 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:29:45.944 -07 000000610 INF: Z Motor: Piezo is near 47.5 V (nominally 0 to 100 V), expect near 56.6 V, since DAC is at 5.664 V. Piezo Error = -9.2 V.
17-03-18 03:29:45.944 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.9 um, Read 10 ADC samples: Avg = 35740 (-169.1 uncal um), Error = 0.9 uncal um, Median = 35739 (-169.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35735 (-169.0 uncal um), Max = 35745 (-169.1 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 03:29:45.944 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35740, posNoise = 5, negNoise = 5
17-03-18 03:29:45.944 -07 000000610 INF: Z Motor: After move to -0.169911, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:29:45.944 -07 000000610 INF: Z Motor: Settle wait time = 1443 ms, measure time = 102 ms (allowed 150 ms), total time = 1545 ms
17-03-18 03:29:45.944 -07 000000610 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-18 03:29:45.994 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1597 ms
17-03-18 03:29:45.994 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 03:29:45.994 -07 000000610 INF: ------------ Scan Snapping tile 9 at Y-position 66.5390625, Z-position -0.169924693957672. ----------
17-03-18 03:29:45.994 -07 000000610 INF: Cycle	113	Tile	9	Exposure Settings		A	406	G	195	T	195	C	406
17-03-18 03:29:45.994 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36940, sync = True, waitForSettling = True)
17-03-18 03:29:45.994 -07 000000610 INF: Z Motor: Moving to -0.169100 mm, started at -0.169925 mm, distance = 0.82 um
17-03-18 03:29:45.994 -07 000000610 INF: FPGA: Xmit ZDACW 36940\n [Z Motor]
17-03-18 03:29:45.994 -07 000000467 INF: FPGA: Recv ZDACW
17-03-18 03:29:46.004 -07 000000610 INF: FPGA: 'ZDACW 36940' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 03:29:46.004 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:29:46.004 -07 000000462 INF: FPGA: Recv ZDACR 36940
17-03-18 03:29:46.014 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:29:46.014 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 03:29:46.164 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:29:46.164 -07 000000424 INF: FPGA: Recv ZSGSRD 35615
17-03-18 03:29:46.174 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:29:46.174 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:29:46.174 -07 000000462 INF: FPGA: Recv ZSGSRD 35616
17-03-18 03:29:46.184 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:29:46.184 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:29:46.184 -07 000000430 INF: FPGA: Recv ZSGSRD 35614
17-03-18 03:29:46.194 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:29:46.194 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:29:46.194 -07 000000462 INF: FPGA: Recv ZSGSRD 35614
17-03-18 03:29:46.204 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:29:46.204 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:29:46.204 -07 000000430 INF: FPGA: Recv ZSGSRD 35612
17-03-18 03:29:46.214 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:29:46.214 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:29:46.214 -07 000000462 INF: FPGA: Recv ZSGSRD 35611
17-03-18 03:29:46.224 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:29:46.224 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:29:46.224 -07 000000430 INF: FPGA: Recv ZSGSRD 35611
17-03-18 03:29:46.234 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:29:46.234 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:29:46.234 -07 000000462 INF: FPGA: Recv ZSGSRD 35612
17-03-18 03:29:46.244 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:29:46.244 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:29:46.244 -07 000000462 INF: FPGA: Recv ZSGSRD 35612
17-03-18 03:29:46.254 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:29:46.254 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:29:46.254 -07 000000462 INF: FPGA: Recv ZSGSRD 35617
17-03-18 03:29:46.264 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:29:46.264 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:29:46.264 -07 000000591 INF: FPGA: Recv ZPIEZORD 31432
17-03-18 03:29:46.274 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:29:46.274 -07 000000610 INF: Z Motor: Piezo is near 47.1 V (nominally 0 to 100 V), expect near 56.4 V, since DAC is at 5.637 V. Piezo Error = -9.2 V.
17-03-18 03:29:46.274 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.1 um, Read 10 ADC samples: Avg = 35613 (-168.2 uncal um), Error = 0.9 uncal um, Median = 35613 (-168.2 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 35611 (-168.2 uncal um), Max = 35617 (-168.3 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 2 (0.0 uncal um)
17-03-18 03:29:46.274 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35613, posNoise = 4, negNoise = 2
17-03-18 03:29:46.274 -07 000000610 INF: Z Motor: After move to -0.169100, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:29:46.274 -07 000000610 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-18 03:29:46.274 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:29:46.274 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:29:46.274 -07 000000591 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:29:46.274 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:29:46.274 -07 000000591 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 03:29:46.274 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:29:46.274 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 03:29:46.274 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 03:29:46.274 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 03:29:46.274 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 03:29:46.274 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 03:29:46.274 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 03:29:46.284 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 03:29:46.284 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 03:29:46.284 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 03:29:46.284 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 03:29:46.284 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 03:29:46.284 -07 000000591 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 12 ms.
17-03-18 03:29:46.294 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 11 ms.
17-03-18 03:29:46.294 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 03:29:46.294 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 406 406 195 195 37117 150\n [Camera]
17-03-18 03:29:46.494 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 03:29:46.574 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 03:29:46.584 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 112. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1642, R2=1712, Total=3354. Warn if over 250 bubbles per interval.
17-03-18 03:29:46.674 -07 000000591 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 113, FrontChillerTemperature: 3.994908,
17-03-18 03:29:46.894 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 598
17-03-18 03:29:46.894 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 598
17-03-18 03:29:46.904 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:29:46.904 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:29:46.904 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) start.
17-03-18 03:29:46.904 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 598
17-03-18 03:29:46.904 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 598
17-03-18 03:29:46.904 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:29:47.014 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:29:47.014 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 03:29:47.294 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) end. Duration was 391 ms.
17-03-18 03:29:47.294 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-18 03:29:47.294 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:29:47.294 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:29:47.294 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 03:29:47.304 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37117 791
17-03-18 03:29:47.304 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning grn on 941
17-03-18 03:29:47.414 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 393 ms.
17-03-18 03:29:47.414 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-18 03:29:47.414 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:29:47.414 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-18 03:29:47.414 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 516 ms.
17-03-18 03:29:47.434 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1136
17-03-18 03:29:47.434 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1136
17-03-18 03:29:47.434 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:29:47.444 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1136
17-03-18 03:29:47.444 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1136
17-03-18 03:29:47.444 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:29:47.444 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:29:47.444 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 1458343128, 0x0, 391868352) start.
17-03-18 03:29:47.444 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:29:47.444 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 03:29:47.634 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP 1331
17-03-18 03:29:47.634 -07 000000618 INF: FPGA: Recv CAMDBLSNAP
17-03-18 03:29:47.634 -07 000000610 INF: FPGA: 'CAMDBLSNAP 406 406 195 195 37117 150' command took 2 ms to send, 1331 ms to get response, and 1338 ms overall
17-03-18 03:29:47.634 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 03:29:47.634 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 10 at Y-position 66.5390625, Z-Position -0.169108819015668. ------
17-03-18 03:29:47.634 -07 000000462 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 03:29:47.634 -07 000000618 INF: Y Motor: MoveYZ optimized starting. Moving Y to 67.3826 mm, moving Z to -0.17594 mm
17-03-18 03:29:47.634 -07 000000618 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 03:29:47.644 -07 000000461 INF: FPGA: Recv FOCMRRCUR 
17-03-18 03:29:47.644 -07 000000462 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 03:29:47.644 -07 000000462 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 03:29:47.644 -07 000000461 INF: Y Motor: Entering MoveAbsStepped (target = 107812 steps, sync = True, waitForSettling = True)
17-03-18 03:29:47.644 -07 000000461 INF: Y Motor: Moving to 67.3826 mm, started at 66.5391 mm, delta = 0.8435 mm
17-03-18 03:29:47.644 -07 000000444 INF: Z Motor: Entering MoveAbsStepped (DAC = 38434, sync = True, waitForSettling = False)
17-03-18 03:29:47.644 -07 000000444 INF: Z Motor: Moving to -0.175940 mm, started at -0.169109 mm, distance = -6.83 um
17-03-18 03:29:47.654 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:29:47.664 -07 000000444 INF: FPGA: Xmit ZDACW 38434\n [Z Motor]
17-03-18 03:29:47.844 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 1458343128, 0x0, 391868352) end. Duration was 400 ms.
17-03-18 03:29:47.844 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 03:29:47.844 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:29:47.844 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 396 ms.
17-03-18 03:29:47.844 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:29:47.844 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-18 03:29:47.844 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:29:47.844 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 408 ms.
17-03-18 03:29:47.844 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:29:47.854 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-18 03:29:47.854 -07 000000501 INF: FPGA: Recv YRDPOS 136273
17-03-18 03:29:47.854 -07 000000501 INF: FPGA: Recv ZDACW
17-03-18 03:29:47.854 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 196 ms to get response, and 212 ms overall
17-03-18 03:29:47.854 -07 000000501 INF: FPGA: Recv FOCMRRFOC
17-03-18 03:29:47.854 -07 000000462 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 206 ms to get response, and 215 ms overall
17-03-18 03:29:47.854 -07 000000461 INF: Y Motor: Encoder = 136273 = motor step 106463.3 = 66.5396 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:29:47.854 -07 000000444 INF: FPGA: 'ZDACW 38434' command took 0 ms to send, 186 ms to get response, and 211 ms overall
17-03-18 03:29:47.854 -07 000000444 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:29:47.864 -07 000000462 INF: FPGA: Recv ZDACR 38434
17-03-18 03:29:47.864 -07 000000444 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 03:29:47.864 -07 000000444 INF: Z Motor: MoveAbsStepped took 216 ms (did NOT wait for settling yet))
17-03-18 03:29:47.864 -07 000000461 INF: Y Motor: Last commanded position = 66.5526 mm (106484.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 03:29:47.864 -07 000000461 INF: Y Motor: Moving 1349 steps-28
17-03-18 03:29:47.864 -07 000000461 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 03:29:48.244 -07 000000462 INF: FPGA: Recv YMVTILE
17-03-18 03:29:48.244 -07 000000461 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 372 ms to get response, and 378 ms overall
17-03-18 03:29:48.284 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:29:48.294 -07 000000444 INF: FPGA: Recv YRDPOS 137978
17-03-18 03:29:48.294 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 03:29:48.294 -07 000000461 INF: Y Motor: Encoder = 137978 = motor step 107795.3 = 67.3721 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:29:48.294 -07 000000461 INF: Y Motor: Position error before settling (table move) = -22 encoder counts (-0.011 mm)
17-03-18 03:29:48.294 -07 000000461 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 380 ms, distance = 0.844 mm, average velocity = 2.220 mm/sec
17-03-18 03:29:49.244 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:29:49.244 -07 000000462 INF: FPGA: Recv YRDPOS 137978
17-03-18 03:29:49.254 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:29:49.254 -07 000000461 INF: Y Motor: Encoder = 137978 = motor step 107795.3 = 67.3721 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:29:49.274 -07 000000461 INF: Y Motor: After move to 67.382607, error = -0.010536, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 03:29:49.274 -07 000000461 INF: Y Motor: Position error after settling (table move) = -22 encoder counts (-0.011 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 03:29:49.274 -07 000000461 INF: Y Motor: Moved to 67.3721 after 1634 ms (table move)
17-03-18 03:29:49.284 -07 000000618 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175940 mm (DAC = 38434)
17-03-18 03:29:49.284 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:29:49.284 -07 000000591 INF: FPGA: Recv ZSGSRD 36678
17-03-18 03:29:49.294 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 03:29:49.294 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:29:49.294 -07 000000444 INF: FPGA: Recv ZSGSRD 36671
17-03-18 03:29:49.304 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:29:49.304 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:29:49.304 -07 000000461 INF: FPGA: Recv ZSGSRD 36675
17-03-18 03:29:49.314 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:29:49.314 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:29:49.824 -07 000000444 INF: FPGA: Recv ZSGSRD 36680
17-03-18 03:29:49.824 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 500 ms to get response, and 510 ms overall
17-03-18 03:29:49.824 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:29:49.824 -07 000000629 INF: FPGA: Recv ZSGSRD 36683
17-03-18 03:29:49.834 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:29:49.834 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:29:49.834 -07 000000444 INF: FPGA: Recv ZSGSRD 36681
17-03-18 03:29:49.844 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:29:49.844 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:29:49.844 -07 000000461 INF: FPGA: Recv ZSGSRD 36674
17-03-18 03:29:49.854 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:29:49.854 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:29:49.854 -07 000000461 INF: FPGA: Recv ZSGSRD 36678
17-03-18 03:29:49.864 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:29:49.864 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:29:49.864 -07 000000444 INF: FPGA: Recv ZSGSRD 36676
17-03-18 03:29:49.874 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:29:49.874 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:29:49.874 -07 000000444 INF: FPGA: Recv ZSGSRD 36681
17-03-18 03:29:49.884 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:29:49.884 -07 000000618 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:29:49.884 -07 000000461 INF: FPGA: Recv ZPIEZORD 32829
17-03-18 03:29:49.894 -07 000000618 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:29:49.894 -07 000000618 INF: Z Motor: Piezo is near 50.1 V (nominally 0 to 100 V), expect near 58.6 V, since DAC is at 5.865 V. Piezo Error = -8.5 V.
17-03-18 03:29:49.894 -07 000000618 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.9 um, Read 10 ADC samples: Avg = 36678 (-175.1 uncal um), Error = 0.9 uncal um, Median = 36678 (-175.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 36671 (-175.0 uncal um), Max = 36683 (-175.1 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 03:29:49.894 -07 000000618 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36678, posNoise = 5, negNoise = 7
17-03-18 03:29:49.894 -07 000000618 INF: Z Motor: After move to -0.175940, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:29:49.894 -07 000000618 INF: Z Motor: Settle wait time = 1639 ms, measure time = 606 ms (allowed 150 ms), total time = 2245 ms
17-03-18 03:29:49.894 -07 000000618 INF: Z Motor: Warning: Actual position measuring time = 606 ms, longer than max expected time of 150 ms
17-03-18 03:29:49.894 -07 000000618 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2252 ms
17-03-18 03:29:49.894 -07 000000618 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 03:29:49.894 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:29:49.894 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:29:49.894 -07 000000444 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:29:49.894 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 03:29:49.894 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:29:49.894 -07 000000629 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:29:49.904 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 03:29:49.904 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 03:29:49.904 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 03:29:49.904 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 03:29:49.914 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 03:29:49.914 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 03:29:49.914 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 03:29:49.954 -07 000000629 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 03:29:50.254 -07 000000461 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 03:29:50.254 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 03:29:50.254 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 03:29:50.264 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1424593000, 0x0, 559484976) start.
17-03-18 03:29:50.294 -07 000000444 INF: FPGA: Recv @CAMSNAP 380
17-03-18 03:29:50.294 -07 000000618 INF: FPGA: Recv CAMSNAP
17-03-18 03:29:50.294 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 378 ms to get response, and 384 ms overall
17-03-18 03:29:50.374 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1424593000, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 03:29:50.374 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:29:50.374 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 03:29:50.374 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 03:29:50.394 -07 000000461 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 03:29:50.394 -07 000000618 INF: Autofocus start
17-03-18 03:29:50.394 -07 000000618 INF: MeasureProfile start
17-03-18 03:29:50.394 -07 000000629 INF: FPGA: Recv FOCMRRCUR 
17-03-18 03:29:50.404 -07 000000461 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 03:29:50.404 -07 000000461 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 03:29:50.414 -07 000000618 INF: MeasureProfile done
17-03-18 03:29:50.414 -07 000000618 INF: X=32  Z correction [um]=0.09220707
17-03-18 03:29:50.414 -07 000000618 INF: Autofocus finished
17-03-18 03:29:50.604 -07 000000618 INF: FPGA: Recv FOCMRRIMG
17-03-18 03:29:50.604 -07 000000461 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 03:29:50.604 -07 000000610 INF: ------------ Scan Snapping tile 10 at Y-position 67.3720703125, Z-position -0.175950604946643. ----------
17-03-18 03:29:50.604 -07 000000610 INF: Cycle	113	Tile	10	Exposure Settings		A	406	G	195	T	195	C	406
17-03-18 03:29:50.614 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36967, sync = True, waitForSettling = True)
17-03-18 03:29:50.614 -07 000000610 INF: Z Motor: Moving to -0.169224 mm, started at -0.175951 mm, distance = 6.73 um
17-03-18 03:29:50.614 -07 000000610 INF: FPGA: Xmit ZDACW 36967\n [Z Motor]
17-03-18 03:29:50.614 -07 000000461 INF: FPGA: Recv ZDACW
17-03-18 03:29:50.624 -07 000000610 INF: FPGA: 'ZDACW 36967' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 03:29:50.624 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:29:50.624 -07 000000629 INF: FPGA: Recv ZDACR 36967
17-03-18 03:29:50.634 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:29:50.634 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 03:29:50.784 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:29:50.784 -07 000000629 INF: FPGA: Recv ZSGSRD 35633
17-03-18 03:29:50.794 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:29:50.794 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:29:50.794 -07 000000444 INF: FPGA: Recv ZSGSRD 35635
17-03-18 03:29:50.804 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:29:50.804 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:29:50.804 -07 000000501 INF: FPGA: Recv ZSGSRD 35637
17-03-18 03:29:50.814 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:29:50.814 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:29:50.814 -07 000000618 INF: FPGA: Recv ZSGSRD 35629
17-03-18 03:29:50.824 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:29:50.824 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:29:50.824 -07 000000629 INF: FPGA: Recv ZSGSRD 35636
17-03-18 03:29:50.834 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:29:50.834 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:29:50.834 -07 000000444 INF: FPGA: Recv ZSGSRD 35629
17-03-18 03:29:50.844 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:29:50.844 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:29:50.844 -07 000000444 INF: FPGA: Recv ZSGSRD 35634
17-03-18 03:29:50.854 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:29:50.854 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:29:50.854 -07 000000501 INF: FPGA: Recv ZSGSRD 35638
17-03-18 03:29:50.864 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:29:50.864 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:29:50.864 -07 000000461 INF: FPGA: Recv ZSGSRD 35631
17-03-18 03:29:50.874 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:29:50.874 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:29:50.874 -07 000000629 INF: FPGA: Recv ZSGSRD 35628
17-03-18 03:29:50.884 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:29:50.884 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:29:50.884 -07 000000629 INF: FPGA: Recv ZPIEZORD 31421
17-03-18 03:29:50.894 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:29:50.894 -07 000000610 INF: Z Motor: Piezo is near 47.1 V (nominally 0 to 100 V), expect near 56.4 V, since DAC is at 5.641 V. Piezo Error = -9.3 V.
17-03-18 03:29:50.894 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.2 um, Read 10 ADC samples: Avg = 35633 (-168.4 uncal um), Error = 0.9 uncal um, Median = 35634 (-168.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35628 (-168.3 uncal um), Max = 35638 (-168.4 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 03:29:50.894 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35633, posNoise = 5, negNoise = 5
17-03-18 03:29:50.894 -07 000000610 INF: Z Motor: After move to -0.169224, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:29:50.894 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 03:29:50.894 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:29:50.894 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:29:50.904 -07 000000444 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:29:50.904 -07 000000461 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:29:50.904 -07 000000606 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 03:29:50.904 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:29:50.904 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 03:29:50.904 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 03:29:50.904 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 03:29:50.904 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 03:29:50.904 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 03:29:50.904 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 03:29:50.914 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-18 03:29:50.914 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 03:29:50.914 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-18 03:29:50.914 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 03:29:50.924 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 03:29:50.924 -07 000000606 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 03:29:50.934 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 03:29:50.934 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 23 ms.
17-03-18 03:29:50.934 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 406 406 195 195 37144 150\n [Camera]
17-03-18 03:29:51.134 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 03:29:51.534 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 598
17-03-18 03:29:51.534 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 598
17-03-18 03:29:51.534 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:29:51.544 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:29:51.544 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 03:29:51.544 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 598
17-03-18 03:29:51.544 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 598
17-03-18 03:29:51.544 -07 000000629 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:29:51.544 -07 000000629 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:29:51.544 -07 000000629 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) start.
17-03-18 03:29:51.574 -07 000000561 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 03:29:51.584 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 112. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1642, R2=1712, Total=3354. Warn if over 250 bubbles per interval.
17-03-18 03:29:51.734 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37144 792
17-03-18 03:29:51.884 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP turning grn on 941
17-03-18 03:29:51.924 -07 000000629 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) end. Duration was 376 ms.
17-03-18 03:29:51.924 -07 000000629 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-18 03:29:51.924 -07 000000629 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:29:51.924 -07 000000629 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:29:51.924 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 386 ms.
17-03-18 03:29:51.924 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-18 03:29:51.924 -07 000000444 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:29:51.934 -07 000000444 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:29:51.934 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-18 03:29:51.934 -07 000000629 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-18 03:29:52.034 -07 000000606 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 113, FrontChillerTemperature: 4.004458,
17-03-18 03:29:52.074 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1136
17-03-18 03:29:52.074 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1136
17-03-18 03:29:52.074 -07 000000629 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:29:52.074 -07 000000629 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:29:52.074 -07 000000629 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-18 03:29:52.074 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1136
17-03-18 03:29:52.074 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1136
17-03-18 03:29:52.084 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:29:52.084 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:29:52.084 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-18 03:29:52.264 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP 1328
17-03-18 03:29:52.264 -07 000000444 INF: FPGA: Recv CAMDBLSNAP
17-03-18 03:29:52.264 -07 000000610 INF: FPGA: 'CAMDBLSNAP 406 406 195 195 37144 150' command took 2 ms to send, 1328 ms to get response, and 1336 ms overall
17-03-18 03:29:52.264 -07 000000610 INF: Skipping AutoFocus in Tile 11: adopting Best-Z from the cache: -0.169526
17-03-18 03:29:52.274 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 68.2126 mm, moving Z to -0.16953 mm
17-03-18 03:29:52.274 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 03:29:52.274 -07 000000561 INF: Z Motor: Entering MoveAbsStepped (DAC = 37033, sync = True, waitForSettling = False)
17-03-18 03:29:52.274 -07 000000561 INF: Z Motor: Moving to -0.169526 mm, started at -0.169237 mm, distance = -0.29 um
17-03-18 03:29:52.274 -07 000000618 INF: Y Motor: Entering MoveAbsStepped (target = 109140 steps, sync = True, waitForSettling = True)
17-03-18 03:29:52.274 -07 000000618 INF: Y Motor: Moving to 68.2126 mm, started at 67.3721 mm, delta = 0.8405 mm
17-03-18 03:29:52.274 -07 000000561 INF: FPGA: Xmit ZDACW 37033\n [Z Motor]
17-03-18 03:29:52.274 -07 000000606 INF: FPGA: Recv ZDACW
17-03-18 03:29:52.284 -07 000000561 INF: FPGA: 'ZDACW 37033' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 03:29:52.284 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:29:52.284 -07 000000444 INF: FPGA: Recv YRDPOS 137978
17-03-18 03:29:52.294 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-18 03:29:52.294 -07 000000618 INF: Y Motor: Encoder = 137978 = motor step 107795.3 = 67.3721 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:29:52.294 -07 000000618 INF: Y Motor: Last commanded position = 67.3826 mm (107812.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 03:29:52.294 -07 000000618 INF: Y Motor: Moving 1345 steps-22
17-03-18 03:29:52.294 -07 000000618 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 03:29:52.304 -07 000000561 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:29:52.304 -07 000000444 INF: FPGA: Recv ZDACR 37033
17-03-18 03:29:52.314 -07 000000561 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 03:29:52.314 -07 000000561 INF: Z Motor: MoveAbsStepped took 34 ms (did NOT wait for settling yet))
17-03-18 03:29:52.484 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 404 ms.
17-03-18 03:29:52.484 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-18 03:29:52.484 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:29:52.484 -07 000000629 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 406 ms.
17-03-18 03:29:52.484 -07 000000629 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-18 03:29:52.484 -07 000000629 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:29:52.494 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 03:29:52.494 -07 000000629 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 03:29:52.494 -07 000000629 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 413 ms.
17-03-18 03:29:52.494 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 416 ms.
17-03-18 03:29:52.664 -07 000000626 INF: FPGA: Recv YMVTILE
17-03-18 03:29:52.664 -07 000000618 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 378 ms overall
17-03-18 03:29:52.714 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:29:52.724 -07 000000444 INF: FPGA: Recv YRDPOS 139684
17-03-18 03:29:52.724 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-18 03:29:52.724 -07 000000618 INF: Y Motor: Encoder = 139684 = motor step 109128.1 = 68.2051 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:29:52.724 -07 000000618 INF: Y Motor: Position error before settling (table move) = -15 encoder counts (-0.007 mm)
17-03-18 03:29:52.724 -07 000000618 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 378 ms, distance = 0.841 mm, average velocity = 2.224 mm/sec
17-03-18 03:29:53.674 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:29:53.674 -07 000000444 INF: FPGA: Recv YRDPOS 139684
17-03-18 03:29:53.684 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:29:53.684 -07 000000618 INF: Y Motor: Encoder = 139684 = motor step 109128.1 = 68.2051 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:29:53.704 -07 000000618 INF: Y Motor: After move to 68.212608, error = -0.007530, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 03:29:53.704 -07 000000618 INF: Y Motor: Position error after settling (table move) = -15 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 03:29:53.704 -07 000000618 INF: Y Motor: Moved to 68.2051 after 1432 ms (table move)
17-03-18 03:29:53.714 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.169526 mm (DAC = 37033)
17-03-18 03:29:53.714 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:29:53.714 -07 000000444 INF: FPGA: Recv ZSGSRD 35677
17-03-18 03:29:53.724 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:29:53.724 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:29:53.724 -07 000000579 INF: FPGA: Recv ZSGSRD 35686
17-03-18 03:29:53.734 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:29:53.734 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:29:53.734 -07 000000501 INF: FPGA: Recv ZSGSRD 35681
17-03-18 03:29:53.744 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:29:53.744 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:29:53.744 -07 000000444 INF: FPGA: Recv ZSGSRD 35677
17-03-18 03:29:53.754 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:29:53.754 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:29:53.754 -07 000000444 INF: FPGA: Recv ZSGSRD 35679
17-03-18 03:29:53.764 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:29:53.764 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:29:53.764 -07 000000444 INF: FPGA: Recv ZSGSRD 35670
17-03-18 03:29:53.774 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:29:53.774 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:29:53.774 -07 000000501 INF: FPGA: Recv ZSGSRD 35676
17-03-18 03:29:53.784 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:29:53.784 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:29:53.784 -07 000000618 INF: FPGA: Recv ZSGSRD 35681
17-03-18 03:29:53.794 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:29:53.794 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:29:53.794 -07 000000579 INF: FPGA: Recv ZSGSRD 35668
17-03-18 03:29:53.804 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:29:53.804 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:29:53.804 -07 000000606 INF: FPGA: Recv ZSGSRD 35685
17-03-18 03:29:53.814 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:29:53.814 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:29:53.814 -07 000000501 INF: FPGA: Recv ZPIEZORD 31475
17-03-18 03:29:53.824 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:29:53.824 -07 000000610 INF: Z Motor: Piezo is near 47.2 V (nominally 0 to 100 V), expect near 56.5 V, since DAC is at 5.651 V. Piezo Error = -9.3 V.
17-03-18 03:29:53.824 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.5 um, Read 10 ADC samples: Avg = 35678 (-168.7 uncal um), Error = 0.9 uncal um, Median = 35678 (-168.7 uncal um), StdDev = 6 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 35668 (-168.6 uncal um), Max = 35686 (-168.7 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-18 03:29:53.824 -07 000000610 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35678, posNoise = 8, negNoise = 10
17-03-18 03:29:53.824 -07 000000610 INF: Z Motor: After move to -0.169526, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:29:53.824 -07 000000610 INF: Z Motor: Settle wait time = 1434 ms, measure time = 110 ms (allowed 150 ms), total time = 1544 ms
17-03-18 03:29:53.824 -07 000000610 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-18 03:29:53.864 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1589 ms
17-03-18 03:29:53.864 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 03:29:53.864 -07 000000610 INF: ------------ Scan Snapping tile 11 at Y-position 68.205078125, Z-position -0.169526392804882. ----------
17-03-18 03:29:53.864 -07 000000610 INF: Cycle	113	Tile	11	Exposure Settings		A	406	G	195	T	195	C	406
17-03-18 03:29:53.864 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36856, sync = True, waitForSettling = True)
17-03-18 03:29:53.864 -07 000000610 INF: Z Motor: Moving to -0.168716 mm, started at -0.169526 mm, distance = 0.81 um
17-03-18 03:29:53.864 -07 000000610 INF: FPGA: Xmit ZDACW 36856\n [Z Motor]
17-03-18 03:29:53.864 -07 000000444 INF: FPGA: Recv ZDACW
17-03-18 03:29:53.874 -07 000000610 INF: FPGA: 'ZDACW 36856' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 03:29:53.874 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:29:53.874 -07 000000618 INF: FPGA: Recv ZDACR 36856
17-03-18 03:29:53.884 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:29:53.884 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 03:29:54.034 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:29:54.034 -07 000000579 INF: FPGA: Recv ZSGSRD 35558
17-03-18 03:29:54.044 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:29:54.044 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:29:54.044 -07 000000444 INF: FPGA: Recv ZSGSRD 35555
17-03-18 03:29:54.054 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:29:54.054 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:29:54.054 -07 000000501 INF: FPGA: Recv ZSGSRD 35553
17-03-18 03:29:54.064 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:29:54.064 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:29:54.064 -07 000000501 INF: FPGA: Recv ZSGSRD 35552
17-03-18 03:29:54.074 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:29:54.074 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:29:54.074 -07 000000618 INF: FPGA: Recv ZSGSRD 35554
17-03-18 03:29:54.084 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:29:54.084 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:29:54.084 -07 000000501 INF: FPGA: Recv ZSGSRD 35558
17-03-18 03:29:54.094 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:29:54.094 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:29:54.094 -07 000000444 INF: FPGA: Recv ZSGSRD 35551
17-03-18 03:29:54.104 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:29:54.104 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:29:54.104 -07 000000579 INF: FPGA: Recv ZSGSRD 35553
17-03-18 03:29:54.114 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:29:54.114 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:29:54.114 -07 000000618 INF: FPGA: Recv ZSGSRD 35555
17-03-18 03:29:54.124 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:29:54.124 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:29:54.124 -07 000000501 INF: FPGA: Recv ZSGSRD 35558
17-03-18 03:29:54.134 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:29:54.134 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:29:54.134 -07 000000501 INF: FPGA: Recv ZPIEZORD 31363
17-03-18 03:29:54.144 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:29:54.144 -07 000000610 INF: Z Motor: Piezo is near 47.0 V (nominally 0 to 100 V), expect near 56.2 V, since DAC is at 5.624 V. Piezo Error = -9.2 V.
17-03-18 03:29:54.144 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.7 um, Read 10 ADC samples: Avg = 35555 (-167.9 uncal um), Error = 0.9 uncal um, Median = 35554 (-167.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 35551 (-167.8 uncal um), Max = 35558 (-167.9 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 03:29:54.144 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35555, posNoise = 3, negNoise = 4
17-03-18 03:29:54.144 -07 000000610 INF: Z Motor: After move to -0.168716, error = -0.000020, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:29:54.144 -07 000000610 INF: Z Motor: MoveAbsStepped took 274 ms)
17-03-18 03:29:54.144 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:29:54.144 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:29:54.144 -07 000000444 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:29:54.144 -07 000000579 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:29:54.144 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 03:29:54.144 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:29:54.144 -07 000000606 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 03:29:54.144 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 03:29:54.144 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 03:29:54.144 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 03:29:54.144 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 03:29:54.144 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 03:29:54.154 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 03:29:54.154 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 03:29:54.154 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 03:29:54.154 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 03:29:54.164 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 03:29:54.164 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 12 ms.
17-03-18 03:29:54.164 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 03:29:54.164 -07 000000606 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 03:29:54.164 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 406 406 195 195 37033 150\n [Camera]
17-03-18 03:29:54.364 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 03:29:54.774 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 598
17-03-18 03:29:54.774 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 598
17-03-18 03:29:54.774 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:29:54.774 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:29:54.774 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-18 03:29:54.774 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 598
17-03-18 03:29:54.774 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 598
17-03-18 03:29:54.774 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:29:54.774 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:29:54.774 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-18 03:29:55.084 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37033 791
17-03-18 03:29:55.114 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP turning grn on 941
17-03-18 03:29:55.144 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 374 ms.
17-03-18 03:29:55.144 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-18 03:29:55.144 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:29:55.154 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:29:55.154 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 383 ms.
17-03-18 03:29:55.154 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-18 03:29:55.154 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:29:55.154 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-18 03:29:55.154 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:29:55.154 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-18 03:29:55.304 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1136
17-03-18 03:29:55.304 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1136
17-03-18 03:29:55.304 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:29:55.314 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1136
17-03-18 03:29:55.314 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1136
17-03-18 03:29:55.314 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:29:55.314 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:29:55.314 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 03:29:55.314 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:29:55.314 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 1458343128, 0x0, 418435064) start.
17-03-18 03:29:55.494 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP 1328
17-03-18 03:29:55.504 -07 000000430 INF: FPGA: Recv CAMDBLSNAP
17-03-18 03:29:55.504 -07 000000610 INF: FPGA: 'CAMDBLSNAP 406 406 195 195 37033 150' command took 2 ms to send, 1330 ms to get response, and 1335 ms overall
17-03-18 03:29:55.504 -07 000000610 INF: Skipping AutoFocus in Tile 12: adopting Best-Z from the cache: -0.169375
17-03-18 03:29:55.504 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.0426 mm, moving Z to -0.16937 mm
17-03-18 03:29:55.504 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 03:29:55.504 -07 000000467 INF: Y Motor: Entering MoveAbsStepped (target = 110468 steps, sync = True, waitForSettling = True)
17-03-18 03:29:55.504 -07 000000467 INF: Y Motor: Moving to 69.0426 mm, started at 68.2051 mm, delta = 0.8375 mm
17-03-18 03:29:55.504 -07 000000467 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:29:55.504 -07 000000512 INF: Z Motor: Entering MoveAbsStepped (DAC = 37000, sync = True, waitForSettling = False)
17-03-18 03:29:55.504 -07 000000512 INF: Z Motor: Moving to -0.169375 mm, started at -0.168736 mm, distance = -0.64 um
17-03-18 03:29:55.504 -07 000000579 INF: FPGA: Recv YRDPOS 139684
17-03-18 03:29:55.514 -07 000000467 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 03:29:55.514 -07 000000512 INF: FPGA: Xmit ZDACW 37000\n [Z Motor]
17-03-18 03:29:55.514 -07 000000467 INF: Y Motor: Encoder = 139684 = motor step 109128.1 = 68.2051 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:29:55.514 -07 000000467 INF: Y Motor: Last commanded position = 68.2126 mm (109140.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 03:29:55.514 -07 000000467 INF: Y Motor: Moving 1340 steps-15
17-03-18 03:29:55.514 -07 000000430 INF: FPGA: Recv ZDACW
17-03-18 03:29:55.524 -07 000000512 INF: FPGA: 'ZDACW 37000' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-18 03:29:55.524 -07 000000512 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:29:55.524 -07 000000618 INF: FPGA: Recv ZDACR 37000
17-03-18 03:29:55.534 -07 000000467 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 03:29:55.534 -07 000000512 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:29:55.534 -07 000000512 INF: Z Motor: MoveAbsStepped took 27 ms (did NOT wait for settling yet))
17-03-18 03:29:55.694 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 381 ms.
17-03-18 03:29:55.694 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-18 03:29:55.694 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:29:55.694 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 1458343128, 0x0, 418435064) end. Duration was 379 ms.
17-03-18 03:29:55.694 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-18 03:29:55.694 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:29:55.694 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 03:29:55.694 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-18 03:29:55.704 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:29:55.704 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 03:29:55.904 -07 000000618 INF: FPGA: Recv YMVTILE
17-03-18 03:29:55.904 -07 000000467 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 03:29:55.954 -07 000000467 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:29:55.954 -07 000000501 INF: FPGA: Recv YRDPOS 141368
17-03-18 03:29:55.964 -07 000000467 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 03:29:55.964 -07 000000467 INF: Y Motor: Encoder = 141368 = motor step 110443.8 = 69.0273 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:29:55.964 -07 000000467 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-18 03:29:55.964 -07 000000467 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.838 mm, average velocity = 2.110 mm/sec
17-03-18 03:29:56.574 -07 000000579 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 03:29:56.584 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 112. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1642, R2=1712, Total=3354. Warn if over 250 bubbles per interval.
17-03-18 03:29:56.914 -07 000000467 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:29:56.914 -07 000000618 INF: FPGA: Recv YRDPOS 141369
17-03-18 03:29:56.924 -07 000000467 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:29:56.924 -07 000000467 INF: Y Motor: Encoder = 141369 = motor step 110444.5 = 69.0278 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:29:56.954 -07 000000467 INF: Y Motor: After move to 69.042610, error = -0.014778, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 03:29:56.954 -07 000000467 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 03:29:56.954 -07 000000467 INF: Y Motor: Moved to 69.0278 after 1446 ms (table move)
17-03-18 03:29:56.954 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.169375 mm (DAC = 37000)
17-03-18 03:29:56.954 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:29:56.954 -07 000000467 INF: FPGA: Recv ZSGSRD 35662
17-03-18 03:29:56.964 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 03:29:56.964 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:29:56.964 -07 000000467 INF: FPGA: Recv ZSGSRD 35655
17-03-18 03:29:56.974 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:29:56.974 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:29:56.974 -07 000000467 INF: FPGA: Recv ZSGSRD 35659
17-03-18 03:29:56.984 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:29:56.984 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:29:56.984 -07 000000512 INF: FPGA: Recv ZSGSRD 35652
17-03-18 03:29:56.994 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:29:56.994 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:29:56.994 -07 000000467 INF: FPGA: Recv ZSGSRD 35660
17-03-18 03:29:57.004 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:29:57.004 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:29:57.004 -07 000000467 INF: FPGA: Recv ZSGSRD 35652
17-03-18 03:29:57.014 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:29:57.014 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:29:57.014 -07 000000591 INF: FPGA: Recv ZSGSRD 35655
17-03-18 03:29:57.024 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:29:57.024 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:29:57.024 -07 000000606 INF: FPGA: Recv ZSGSRD 35654
17-03-18 03:29:57.034 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:29:57.034 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:29:57.034 -07 000000467 INF: FPGA: Recv ZSGSRD 35654
17-03-18 03:29:57.044 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:29:57.044 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:29:57.044 -07 000000462 INF: FPGA: Recv ZSGSRD 35660
17-03-18 03:29:57.054 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:29:57.054 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:29:57.054 -07 000000462 INF: FPGA: Recv ZPIEZORD 31487
17-03-18 03:29:57.064 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:29:57.064 -07 000000610 INF: Z Motor: Piezo is near 47.3 V (nominally 0 to 100 V), expect near 56.5 V, since DAC is at 5.646 V. Piezo Error = -9.2 V.
17-03-18 03:29:57.064 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.4 um, Read 10 ADC samples: Avg = 35656 (-168.5 uncal um), Error = 0.9 uncal um, Median = 35655 (-168.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35652 (-168.5 uncal um), Max = 35662 (-168.6 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 03:29:57.064 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35656, posNoise = 6, negNoise = 4
17-03-18 03:29:57.064 -07 000000610 INF: Z Motor: After move to -0.169375, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:29:57.064 -07 000000610 INF: Z Motor: Settle wait time = 1448 ms, measure time = 107 ms (allowed 150 ms), total time = 1555 ms
17-03-18 03:29:57.064 -07 000000610 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-18 03:29:57.114 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1607 ms
17-03-18 03:29:57.114 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 03:29:57.114 -07 000000610 INF: ------------ Scan Snapping tile 12 at Y-position 69.02783203125, Z-position -0.169385060137764. ----------
17-03-18 03:29:57.114 -07 000000610 INF: Cycle	113	Tile	12	Exposure Settings		A	406	G	195	T	195	C	406
17-03-18 03:29:57.114 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36823, sync = True, waitForSettling = True)
17-03-18 03:29:57.114 -07 000000610 INF: Z Motor: Moving to -0.168565 mm, started at -0.169385 mm, distance = 0.82 um
17-03-18 03:29:57.114 -07 000000610 INF: FPGA: Xmit ZDACW 36823\n [Z Motor]
17-03-18 03:29:57.114 -07 000000579 INF: FPGA: Recv ZDACW
17-03-18 03:29:57.124 -07 000000610 INF: FPGA: 'ZDACW 36823' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 03:29:57.124 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:29:57.124 -07 000000579 INF: FPGA: Recv ZDACR 36823
17-03-18 03:29:57.134 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:29:57.134 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 03:29:57.284 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:29:57.284 -07 000000579 INF: FPGA: Recv ZSGSRD 35534
17-03-18 03:29:57.294 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:29:57.294 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:29:57.294 -07 000000579 INF: FPGA: Recv ZSGSRD 35530
17-03-18 03:29:57.304 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:29:57.304 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:29:57.304 -07 000000462 INF: FPGA: Recv ZSGSRD 35536
17-03-18 03:29:57.314 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:29:57.314 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:29:57.314 -07 000000462 INF: FPGA: Recv ZSGSRD 35532
17-03-18 03:29:57.324 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:29:57.324 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:29:57.324 -07 000000579 INF: FPGA: Recv ZSGSRD 35529
17-03-18 03:29:57.334 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:29:57.334 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:29:57.334 -07 000000579 INF: FPGA: Recv ZSGSRD 35528
17-03-18 03:29:57.344 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:29:57.344 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:29:57.344 -07 000000618 INF: FPGA: Recv ZSGSRD 35528
17-03-18 03:29:57.354 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:29:57.354 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:29:57.354 -07 000000462 INF: FPGA: Recv ZSGSRD 35537
17-03-18 03:29:57.364 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:29:57.364 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:29:57.364 -07 000000618 INF: FPGA: Recv ZSGSRD 35534
17-03-18 03:29:57.374 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:29:57.374 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:29:57.374 -07 000000462 INF: FPGA: Recv ZSGSRD 35530
17-03-18 03:29:57.384 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:29:57.394 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:29:57.394 -07 000000462 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 113, FrontChillerTemperature: 3.996267,
17-03-18 03:29:57.394 -07 000000618 INF: FPGA: Recv ZPIEZORD 31342
17-03-18 03:29:57.404 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 03:29:57.404 -07 000000610 INF: Z Motor: Piezo is near 47.0 V (nominally 0 to 100 V), expect near 56.2 V, since DAC is at 5.619 V. Piezo Error = -9.2 V.
17-03-18 03:29:57.404 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.6 um, Read 10 ADC samples: Avg = 35532 (-167.7 uncal um), Error = 0.8 uncal um, Median = 35531 (-167.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35528 (-167.7 uncal um), Max = 35537 (-167.7 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 03:29:57.404 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35532, posNoise = 5, negNoise = 4
17-03-18 03:29:57.404 -07 000000610 INF: Z Motor: After move to -0.168565, error = -0.000024, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:29:57.404 -07 000000610 INF: Z Motor: MoveAbsStepped took 284 ms)
17-03-18 03:29:57.404 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:29:57.404 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:29:57.404 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:29:57.404 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:29:57.404 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 03:29:57.404 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:29:57.404 -07 000000579 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 03:29:57.404 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 03:29:57.404 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 03:29:57.404 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 03:29:57.404 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 03:29:57.404 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 03:29:57.414 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 03:29:57.414 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 03:29:57.414 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 03:29:57.414 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 03:29:57.424 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 13 ms.
17-03-18 03:29:57.424 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 03:29:57.424 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 13 ms.
17-03-18 03:29:57.424 -07 000000579 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 18 ms.
17-03-18 03:29:57.444 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 406 406 195 195 37000 150\n [Camera]
17-03-18 03:29:57.644 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 03:29:58.044 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 598
17-03-18 03:29:58.044 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 598
17-03-18 03:29:58.044 -07 000000430 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:29:58.054 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 598
17-03-18 03:29:58.054 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 598
17-03-18 03:29:58.054 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:29:58.064 -07 000000430 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:29:58.064 -07 000000430 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-18 03:29:58.064 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:29:58.064 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-18 03:29:58.234 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37000 791
17-03-18 03:29:58.384 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning grn on 942
17-03-18 03:29:58.434 -07 000000430 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 374 ms.
17-03-18 03:29:58.434 -07 000000430 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 374 ms.
17-03-18 03:29:58.434 -07 000000430 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:29:58.434 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 373 ms.
17-03-18 03:29:58.434 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 373 ms.
17-03-18 03:29:58.434 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:29:58.444 -07 000000430 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 03:29:58.444 -07 000000430 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-18 03:29:58.444 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 03:29:58.454 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-18 03:29:58.584 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1136
17-03-18 03:29:58.584 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1136
17-03-18 03:29:58.584 -07 000000629 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:29:58.584 -07 000000629 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:29:58.584 -07 000000629 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 03:29:58.584 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1136
17-03-18 03:29:58.584 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1136
17-03-18 03:29:58.584 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:29:58.594 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:29:58.594 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) start.
17-03-18 03:29:58.774 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP 1329
17-03-18 03:29:58.774 -07 000000424 INF: FPGA: Recv CAMDBLSNAP
17-03-18 03:29:58.774 -07 000000610 INF: FPGA: 'CAMDBLSNAP 406 406 195 195 37000 150' command took 2 ms to send, 1325 ms to get response, and 1347 ms overall
17-03-18 03:29:58.774 -07 000000610 INF: Skipping AutoFocus in Tile 13: adopting Best-Z from the cache: -0.168903
17-03-18 03:29:58.774 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.8726 mm, moving Z to -0.16890 mm
17-03-18 03:29:58.774 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 03:29:58.784 -07 000000579 INF: Y Motor: Entering MoveAbsStepped (target = 111796 steps, sync = True, waitForSettling = True)
17-03-18 03:29:58.784 -07 000000579 INF: Y Motor: Moving to 69.8726 mm, started at 69.0278 mm, delta = 0.8448 mm
17-03-18 03:29:58.784 -07 000000579 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:29:58.784 -07 000000462 INF: Z Motor: Entering MoveAbsStepped (DAC = 36897, sync = True, waitForSettling = False)
17-03-18 03:29:58.784 -07 000000462 INF: Z Motor: Moving to -0.168904 mm, started at -0.168588 mm, distance = -0.32 um
17-03-18 03:29:58.784 -07 000000461 INF: FPGA: Recv YRDPOS 141369
17-03-18 03:29:58.794 -07 000000579 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:29:58.794 -07 000000579 INF: Y Motor: Encoder = 141369 = motor step 110444.5 = 69.0278 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:29:58.794 -07 000000579 INF: Y Motor: Last commanded position = 69.0426 mm (110468.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 03:29:58.794 -07 000000579 INF: Y Motor: Moving 1352 steps-31
17-03-18 03:29:58.794 -07 000000462 INF: FPGA: Xmit ZDACW 36897\n [Z Motor]
17-03-18 03:29:58.794 -07 000000461 INF: FPGA: Recv ZDACW
17-03-18 03:29:58.804 -07 000000462 INF: FPGA: 'ZDACW 36897' command took 1 ms to send, 0 ms to get response, and 17 ms overall
17-03-18 03:29:58.804 -07 000000462 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:29:58.804 -07 000000424 INF: FPGA: Recv ZDACR 36897
17-03-18 03:29:58.814 -07 000000579 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 03:29:58.814 -07 000000462 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:29:58.814 -07 000000462 INF: Z Motor: MoveAbsStepped took 28 ms (did NOT wait for settling yet))
17-03-18 03:29:58.974 -07 000000629 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 391 ms.
17-03-18 03:29:58.974 -07 000000629 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-18 03:29:58.974 -07 000000629 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:29:58.974 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) end. Duration was 388 ms.
17-03-18 03:29:58.974 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-18 03:29:58.974 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:29:58.984 -07 000000629 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 03:29:58.984 -07 000000629 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 03:29:58.984 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 03:29:58.994 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 03:29:59.184 -07 000000462 INF: FPGA: Recv YMVTILE
17-03-18 03:29:59.184 -07 000000579 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 254 ms to get response, and 397 ms overall
17-03-18 03:29:59.234 -07 000000579 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:29:59.244 -07 000000618 INF: FPGA: Recv YRDPOS 143080
17-03-18 03:29:59.244 -07 000000579 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 03:29:59.244 -07 000000579 INF: Y Motor: Encoder = 143080 = motor step 111781.3 = 69.8633 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:29:59.244 -07 000000579 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm)
17-03-18 03:29:59.244 -07 000000579 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.845 mm, average velocity = 2.123 mm/sec
17-03-18 03:30:00.194 -07 000000579 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:30:00.194 -07 000000467 INF: FPGA: Recv YRDPOS 143080
17-03-18 03:30:00.204 -07 000000579 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:30:00.204 -07 000000579 INF: Y Motor: Encoder = 143080 = motor step 111781.3 = 69.8633 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:30:00.224 -07 000000579 INF: Y Motor: After move to 69.872612, error = -0.009331, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 03:30:00.224 -07 000000579 INF: Y Motor: Position error after settling (table move) = -19 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 03:30:00.224 -07 000000579 INF: Y Motor: Moved to 69.8633 after 1448 ms (table move)
17-03-18 03:30:00.234 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.168904 mm (DAC = 36897)
17-03-18 03:30:00.234 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:00.234 -07 000000461 INF: FPGA: Recv ZSGSRD 35588
17-03-18 03:30:00.244 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 03:30:00.244 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:00.244 -07 000000618 INF: FPGA: Recv ZSGSRD 35586
17-03-18 03:30:00.254 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:00.254 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:00.254 -07 000000618 INF: FPGA: Recv ZSGSRD 35585
17-03-18 03:30:00.264 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:00.264 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:00.264 -07 000000626 INF: FPGA: Recv ZSGSRD 35590
17-03-18 03:30:00.274 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:00.274 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:00.274 -07 000000626 INF: FPGA: Recv ZSGSRD 35583
17-03-18 03:30:00.284 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:00.284 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:00.284 -07 000000626 INF: FPGA: Recv ZSGSRD 35576
17-03-18 03:30:00.294 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:00.294 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:00.294 -07 000000626 INF: FPGA: Recv ZSGSRD 35582
17-03-18 03:30:00.304 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:00.304 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:00.304 -07 000000626 INF: FPGA: Recv ZSGSRD 35577
17-03-18 03:30:00.314 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:00.314 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:00.314 -07 000000626 INF: FPGA: Recv ZSGSRD 35585
17-03-18 03:30:00.324 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:00.324 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:00.324 -07 000000626 INF: FPGA: Recv ZSGSRD 35587
17-03-18 03:30:00.334 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:00.334 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:30:00.334 -07 000000424 INF: FPGA: Recv ZPIEZORD 31365
17-03-18 03:30:00.344 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:00.344 -07 000000610 INF: Z Motor: Piezo is near 47.0 V (nominally 0 to 100 V), expect near 56.3 V, since DAC is at 5.630 V. Piezo Error = -9.3 V.
17-03-18 03:30:00.344 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.9 um, Read 10 ADC samples: Avg = 35584 (-168.1 uncal um), Error = 0.9 uncal um, Median = 35585 (-168.1 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 35576 (-168.0 uncal um), Max = 35590 (-168.1 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 03:30:00.344 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35584, posNoise = 6, negNoise = 8
17-03-18 03:30:00.344 -07 000000610 INF: Z Motor: After move to -0.168904, error = -0.000019, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:30:00.344 -07 000000610 INF: Z Motor: Settle wait time = 1451 ms, measure time = 107 ms (allowed 150 ms), total time = 1558 ms
17-03-18 03:30:00.344 -07 000000610 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-18 03:30:00.394 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1611 ms
17-03-18 03:30:00.394 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 03:30:00.394 -07 000000610 INF: ------------ Scan Snapping tile 13 at Y-position 69.86328125, Z-position -0.168922516863557. ----------
17-03-18 03:30:00.394 -07 000000610 INF: Cycle	113	Tile	13	Exposure Settings		A	406	G	195	T	195	C	406
17-03-18 03:30:00.394 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36720, sync = True, waitForSettling = True)
17-03-18 03:30:00.394 -07 000000610 INF: Z Motor: Moving to -0.168093 mm, started at -0.168923 mm, distance = 0.83 um
17-03-18 03:30:00.394 -07 000000610 INF: FPGA: Xmit ZDACW 36720\n [Z Motor]
17-03-18 03:30:00.394 -07 000000430 INF: FPGA: Recv ZDACW
17-03-18 03:30:00.404 -07 000000610 INF: FPGA: 'ZDACW 36720' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 03:30:00.404 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:30:00.404 -07 000000455 INF: FPGA: Recv ZDACR 36720
17-03-18 03:30:00.414 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:00.414 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 03:30:00.564 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:00.564 -07 000000629 INF: FPGA: Recv ZSGSRD 35455
17-03-18 03:30:00.574 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:30:00.574 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:00.574 -07 000000629 INF: FPGA: Recv ZSGSRD 35461
17-03-18 03:30:00.584 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:00.584 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:00.584 -07 000000430 INF: FPGA: Recv ZSGSRD 35457
17-03-18 03:30:00.594 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:00.594 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:00.594 -07 000000455 INF: FPGA: Recv ZSGSRD 35459
17-03-18 03:30:00.604 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:00.604 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:00.604 -07 000000455 INF: FPGA: Recv ZSGSRD 35454
17-03-18 03:30:00.614 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:00.614 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:00.614 -07 000000455 INF: FPGA: Recv ZSGSRD 35449
17-03-18 03:30:00.624 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:00.624 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:00.624 -07 000000430 INF: FPGA: Recv ZSGSRD 35461
17-03-18 03:30:00.634 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:00.634 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:00.634 -07 000000430 INF: FPGA: Recv ZSGSRD 35459
17-03-18 03:30:00.644 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:00.644 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:00.644 -07 000000461 INF: FPGA: Recv ZSGSRD 35458
17-03-18 03:30:00.654 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:00.654 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:00.654 -07 000000467 INF: FPGA: Recv ZSGSRD 35459
17-03-18 03:30:00.664 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:00.664 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:30:00.664 -07 000000461 INF: FPGA: Recv ZPIEZORD 31198
17-03-18 03:30:00.674 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:00.674 -07 000000610 INF: Z Motor: Piezo is near 46.6 V (nominally 0 to 100 V), expect near 56.0 V, since DAC is at 5.603 V. Piezo Error = -9.4 V.
17-03-18 03:30:00.674 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.1 um, Read 10 ADC samples: Avg = 35457 (-167.2 uncal um), Error = 0.9 uncal um, Median = 35458 (-167.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35449 (-167.2 uncal um), Max = 35461 (-167.3 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 03:30:00.674 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35457, posNoise = 4, negNoise = 8
17-03-18 03:30:00.674 -07 000000610 INF: Z Motor: After move to -0.168093, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:30:00.674 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-18 03:30:00.674 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:30:00.674 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:30:00.674 -07 000000455 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:30:00.674 -07 000000579 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:30:00.674 -07 000000467 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 03:30:00.674 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:30:00.674 -07 000000461 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 03:30:00.674 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 03:30:00.674 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 03:30:00.674 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 03:30:00.674 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 03:30:00.674 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 03:30:00.684 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 03:30:00.684 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 03:30:00.684 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 5 ms.
17-03-18 03:30:00.684 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 03:30:00.694 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 03:30:00.694 -07 000000467 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 03:30:00.694 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 03:30:00.694 -07 000000461 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 03:30:00.694 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 406 406 195 195 36897 150\n [Camera]
17-03-18 03:30:00.894 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 03:30:01.304 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 598
17-03-18 03:30:01.304 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 598
17-03-18 03:30:01.304 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:30:01.304 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 598
17-03-18 03:30:01.304 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 598
17-03-18 03:30:01.304 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:30:01.314 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:30:01.314 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 03:30:01.314 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:30:01.314 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 1458343128, 0x0, 418435064) start.
17-03-18 03:30:01.494 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36897 791
17-03-18 03:30:01.574 -07 000000467 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 03:30:01.584 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 112. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1642, R2=1712, Total=3354. Warn if over 250 bubbles per interval.
17-03-18 03:30:01.644 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP turning grn on 941
17-03-18 03:30:01.684 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 373 ms.
17-03-18 03:30:01.684 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 374 ms.
17-03-18 03:30:01.684 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:30:01.684 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 1458343128, 0x0, 418435064) end. Duration was 371 ms.
17-03-18 03:30:01.684 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 372 ms.
17-03-18 03:30:01.684 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:30:01.694 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 03:30:01.694 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-18 03:30:01.694 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 03:30:01.704 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-18 03:30:01.844 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1136
17-03-18 03:30:01.844 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1136
17-03-18 03:30:01.844 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:30:01.844 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1136
17-03-18 03:30:01.844 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1136
17-03-18 03:30:01.844 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:30:01.844 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:30:01.844 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) start.
17-03-18 03:30:01.854 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:30:01.854 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-18 03:30:02.034 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP 1329
17-03-18 03:30:02.034 -07 000000455 INF: FPGA: Recv CAMDBLSNAP
17-03-18 03:30:02.034 -07 000000610 INF: FPGA: 'CAMDBLSNAP 406 406 195 195 36897 150' command took 2 ms to send, 1325 ms to get response, and 1335 ms overall
17-03-18 03:30:02.034 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 03:30:02.034 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 14 at Y-position 69.86328125, Z-Position -0.168106641921553. ------
17-03-18 03:30:02.044 -07 000000461 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 03:30:02.044 -07 000000579 INF: Y Motor: MoveYZ optimized starting. Moving Y to 70.7026 mm, moving Z to -0.17404 mm
17-03-18 03:30:02.044 -07 000000579 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 03:30:02.044 -07 000000455 INF: Y Motor: Entering MoveAbsStepped (target = 113124 steps, sync = True, waitForSettling = True)
17-03-18 03:30:02.044 -07 000000455 INF: Y Motor: Moving to 70.7026 mm, started at 69.8633 mm, delta = 0.8393 mm
17-03-18 03:30:02.054 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:30:02.234 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 383 ms.
17-03-18 03:30:02.234 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-18 03:30:02.234 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:30:02.234 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) end. Duration was 391 ms.
17-03-18 03:30:02.234 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-18 03:30:02.234 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:30:02.244 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:30:02.244 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 03:30:02.244 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:30:02.254 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-18 03:30:02.274 -07 000000467 INF: FPGA: Recv FOCMRRCUR 
17-03-18 03:30:02.274 -07 000000467 INF: FPGA: Recv YRDPOS 143080
17-03-18 03:30:02.274 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 211 ms to get response, and 228 ms overall
17-03-18 03:30:02.274 -07 000000455 INF: Y Motor: Encoder = 143080 = motor step 111781.3 = 69.8633 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:30:02.274 -07 000000455 INF: Y Motor: Last commanded position = 69.8726 mm (111796.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 03:30:02.274 -07 000000455 INF: Y Motor: Moving 1343 steps-19
17-03-18 03:30:02.274 -07 000000455 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 03:30:02.274 -07 000000561 INF: Z Motor: Entering MoveAbsStepped (DAC = 38018, sync = True, waitForSettling = False)
17-03-18 03:30:02.274 -07 000000461 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 221 ms to get response, and 231 ms overall
17-03-18 03:30:02.274 -07 000000561 INF: Z Motor: Moving to -0.174035 mm, started at -0.168107 mm, distance = -5.93 um
17-03-18 03:30:02.284 -07 000000561 INF: FPGA: Xmit ZDACW 38018\n [Z Motor]
17-03-18 03:30:02.284 -07 000000467 INF: FPGA: Recv ZDACW
17-03-18 03:30:02.294 -07 000000461 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 03:30:02.294 -07 000000561 INF: FPGA: 'ZDACW 38018' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-18 03:30:02.304 -07 000000561 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:30:02.304 -07 000000467 INF: FPGA: Recv ZDACR 38018
17-03-18 03:30:02.314 -07 000000561 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 03:30:02.314 -07 000000561 INF: Z Motor: MoveAbsStepped took 34 ms (did NOT wait for settling yet))
17-03-18 03:30:02.494 -07 000000561 INF: FPGA: Recv FOCMRRFOC
17-03-18 03:30:02.494 -07 000000461 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 216 ms overall
17-03-18 03:30:02.654 -07 000000561 INF: FPGA: Recv YMVTILE
17-03-18 03:30:02.654 -07 000000455 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 373 ms to get response, and 378 ms overall
17-03-18 03:30:02.704 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:30:02.704 -07 000000561 INF: FPGA: Recv YRDPOS 144770
17-03-18 03:30:02.714 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 03:30:02.714 -07 000000455 INF: Y Motor: Encoder = 144770 = motor step 113101.6 = 70.6885 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:30:02.714 -07 000000455 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-18 03:30:02.714 -07 000000455 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 378 ms, distance = 0.839 mm, average velocity = 2.220 mm/sec
17-03-18 03:30:02.764 -07 000000461 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 113, FrontChillerTemperature: 4.024884,
17-03-18 03:30:03.664 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:30:03.664 -07 000000467 INF: FPGA: Recv YRDPOS 144770
17-03-18 03:30:03.674 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:30:03.674 -07 000000455 INF: Y Motor: Encoder = 144770 = motor step 113101.6 = 70.6885 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:30:03.694 -07 000000455 INF: Y Motor: After move to 70.702606, error = -0.014130, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 03:30:03.704 -07 000000455 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 03:30:03.704 -07 000000455 INF: Y Motor: Moved to 70.6885 after 1656 ms (table move)
17-03-18 03:30:03.704 -07 000000579 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174035 mm (DAC = 38018)
17-03-18 03:30:03.704 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:03.704 -07 000000444 INF: FPGA: Recv ZSGSRD 36384
17-03-18 03:30:03.714 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 03:30:03.714 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:03.714 -07 000000591 INF: FPGA: Recv ZSGSRD 36383
17-03-18 03:30:03.724 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:03.724 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:03.724 -07 000000561 INF: FPGA: Recv ZSGSRD 36377
17-03-18 03:30:03.734 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:03.734 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:03.734 -07 000000591 INF: FPGA: Recv ZSGSRD 36382
17-03-18 03:30:03.744 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:03.744 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:03.744 -07 000000561 INF: FPGA: Recv ZSGSRD 36379
17-03-18 03:30:03.754 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:03.754 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:03.754 -07 000000591 INF: FPGA: Recv ZSGSRD 36382
17-03-18 03:30:03.764 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:03.764 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:03.764 -07 000000444 INF: FPGA: Recv ZSGSRD 36382
17-03-18 03:30:03.774 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:03.774 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:03.774 -07 000000561 INF: FPGA: Recv ZSGSRD 36375
17-03-18 03:30:03.784 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:03.784 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:03.784 -07 000000444 INF: FPGA: Recv ZSGSRD 36383
17-03-18 03:30:03.794 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:03.794 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:03.794 -07 000000561 INF: FPGA: Recv ZSGSRD 36377
17-03-18 03:30:03.804 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:03.804 -07 000000579 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:30:03.804 -07 000000467 INF: FPGA: Recv ZPIEZORD 32455
17-03-18 03:30:03.814 -07 000000579 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 03:30:03.814 -07 000000579 INF: Z Motor: Piezo is near 49.3 V (nominally 0 to 100 V), expect near 58.0 V, since DAC is at 5.801 V. Piezo Error = -8.7 V.
17-03-18 03:30:03.814 -07 000000579 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.0 um, Read 10 ADC samples: Avg = 36380 (-173.2 uncal um), Error = 0.9 uncal um, Median = 36382 (-173.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 36375 (-173.1 uncal um), Max = 36384 (-173.2 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 03:30:03.814 -07 000000579 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36380, posNoise = 4, negNoise = 5
17-03-18 03:30:03.814 -07 000000579 INF: Z Motor: After move to -0.174035, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:30:03.814 -07 000000579 INF: Z Motor: Settle wait time = 1427 ms, measure time = 107 ms (allowed 150 ms), total time = 1534 ms
17-03-18 03:30:03.814 -07 000000579 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-18 03:30:03.864 -07 000000579 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1819 ms
17-03-18 03:30:03.864 -07 000000579 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 03:30:03.864 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:30:03.864 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:30:03.864 -07 000000455 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:30:03.864 -07 000000467 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 03:30:03.864 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:30:03.864 -07 000000444 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:30:03.864 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 03:30:03.864 -07 000000467 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 03:30:03.874 -07 000000467 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 03:30:03.874 -07 000000467 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 03:30:03.884 -07 000000467 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-18 03:30:03.884 -07 000000467 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 14 ms.
17-03-18 03:30:03.884 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 03:30:03.934 -07 000000561 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 03:30:04.234 -07 000000606 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 03:30:04.234 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 03:30:04.234 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 03:30:04.234 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1424593000, 0x0, 559484976) start.
17-03-18 03:30:04.274 -07 000000579 INF: FPGA: Recv @CAMSNAP 380
17-03-18 03:30:04.274 -07 000000591 INF: FPGA: Recv CAMSNAP
17-03-18 03:30:04.274 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 381 ms to get response, and 386 ms overall
17-03-18 03:30:04.364 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1424593000, 0x0, 559484976) end. Duration was 126 ms.
17-03-18 03:30:04.364 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:30:04.364 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 03:30:04.364 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms.
17-03-18 03:30:04.374 -07 000000467 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 03:30:04.374 -07 000000455 INF: Autofocus start
17-03-18 03:30:04.374 -07 000000455 INF: MeasureProfile start
17-03-18 03:30:04.374 -07 000000561 INF: FPGA: Recv FOCMRRCUR 
17-03-18 03:30:04.384 -07 000000467 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 03:30:04.384 -07 000000467 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 03:30:04.384 -07 000000455 INF: MeasureProfile done
17-03-18 03:30:04.384 -07 000000455 INF: X=-32  Z correction [um]=-0.2344
17-03-18 03:30:04.384 -07 000000455 INF: Autofocus finished
17-03-18 03:30:04.584 -07 000000444 INF: FPGA: Recv FOCMRRIMG
17-03-18 03:30:04.584 -07 000000467 INF: FPGA: 'FOCMRRIMG' command took 2 ms to send, 195 ms to get response, and 204 ms overall
17-03-18 03:30:04.584 -07 000000610 INF: ------------ Scan Snapping tile 14 at Y-position 70.6884765625, Z-position -0.174036189728399. ----------
17-03-18 03:30:04.594 -07 000000610 INF: Cycle	113	Tile	14	Exposure Settings		A	406	G	195	T	195	C	406
17-03-18 03:30:04.594 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36480, sync = True, waitForSettling = True)
17-03-18 03:30:04.594 -07 000000610 INF: Z Motor: Moving to -0.166995 mm, started at -0.174036 mm, distance = 7.04 um
17-03-18 03:30:04.594 -07 000000610 INF: FPGA: Xmit ZDACW 36480\n [Z Motor]
17-03-18 03:30:04.594 -07 000000561 INF: FPGA: Recv ZDACW
17-03-18 03:30:04.604 -07 000000610 INF: FPGA: 'ZDACW 36480' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 03:30:04.604 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:30:04.604 -07 000000591 INF: FPGA: Recv ZDACR 36480
17-03-18 03:30:04.614 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:04.614 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 03:30:04.764 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:04.764 -07 000000461 INF: FPGA: Recv ZSGSRD 35283
17-03-18 03:30:04.774 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:04.774 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:04.774 -07 000000467 INF: FPGA: Recv ZSGSRD 35283
17-03-18 03:30:04.784 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:04.784 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:04.784 -07 000000561 INF: FPGA: Recv ZSGSRD 35288
17-03-18 03:30:04.794 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:04.794 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:04.794 -07 000000606 INF: FPGA: Recv ZSGSRD 35285
17-03-18 03:30:04.804 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:04.804 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:04.804 -07 000000455 INF: FPGA: Recv ZSGSRD 35288
17-03-18 03:30:04.814 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:04.814 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:04.814 -07 000000444 INF: FPGA: Recv ZSGSRD 35287
17-03-18 03:30:04.824 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:04.824 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:04.824 -07 000000467 INF: FPGA: Recv ZSGSRD 35285
17-03-18 03:30:04.834 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:04.834 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:04.834 -07 000000467 INF: FPGA: Recv ZSGSRD 35289
17-03-18 03:30:04.844 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:04.844 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:04.844 -07 000000461 INF: FPGA: Recv ZSGSRD 35285
17-03-18 03:30:04.854 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:04.854 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:04.854 -07 000000455 INF: FPGA: Recv ZSGSRD 35278
17-03-18 03:30:04.864 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:04.864 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:30:04.864 -07 000000444 INF: FPGA: Recv ZPIEZORD 30985
17-03-18 03:30:04.874 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:04.874 -07 000000610 INF: Z Motor: Piezo is near 46.2 V (nominally 0 to 100 V), expect near 55.7 V, since DAC is at 5.566 V. Piezo Error = -9.5 V.
17-03-18 03:30:04.874 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.0 um, Read 10 ADC samples: Avg = 35285 (-166.1 uncal um), Error = 0.9 uncal um, Median = 35285 (-166.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35278 (-166.1 uncal um), Max = 35289 (-166.2 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 03:30:04.874 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35285, posNoise = 4, negNoise = 7
17-03-18 03:30:04.874 -07 000000610 INF: Z Motor: After move to -0.166995, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:30:04.874 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 03:30:04.874 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:30:04.874 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:30:04.874 -07 000000579 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:30:04.874 -07 000000455 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:30:04.874 -07 000000461 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 03:30:04.874 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:30:04.874 -07 000000444 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 03:30:04.874 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 03:30:04.874 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 03:30:04.874 -07 000000444 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 03:30:04.874 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 03:30:04.874 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 03:30:04.874 -07 000000444 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 03:30:04.874 -07 000000444 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 03:30:04.884 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 03:30:04.884 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 03:30:04.894 -07 000000444 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 03:30:04.894 -07 000000444 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 19 ms.
17-03-18 03:30:04.894 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 03:30:04.894 -07 000000461 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 03:30:04.894 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 406 406 195 195 36657 150\n [Camera]
17-03-18 03:30:05.094 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 03:30:05.504 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 598
17-03-18 03:30:05.504 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 598
17-03-18 03:30:05.504 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:30:05.504 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:30:05.504 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 03:30:05.504 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 598
17-03-18 03:30:05.504 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 598
17-03-18 03:30:05.504 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:30:05.504 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:30:05.504 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start.
17-03-18 03:30:05.694 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36657 791
17-03-18 03:30:05.844 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP turning grn on 941
17-03-18 03:30:05.884 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 377 ms.
17-03-18 03:30:05.884 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-18 03:30:05.884 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:30:05.884 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 374 ms.
17-03-18 03:30:05.884 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-18 03:30:05.884 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:30:05.884 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 03:30:05.884 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-18 03:30:05.884 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 03:30:05.894 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-18 03:30:06.044 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1136
17-03-18 03:30:06.044 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1136
17-03-18 03:30:06.044 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:30:06.044 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1136
17-03-18 03:30:06.044 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1136
17-03-18 03:30:06.044 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:30:06.044 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) start.
17-03-18 03:30:06.044 -07 000000444 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:30:06.174 -07 000000444 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:30:06.174 -07 000000444 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 03:30:06.234 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP 1331
17-03-18 03:30:06.234 -07 000000461 INF: FPGA: Recv CAMDBLSNAP
17-03-18 03:30:06.234 -07 000000610 INF: FPGA: 'CAMDBLSNAP 406 406 195 195 36657 150' command took 2 ms to send, 1326 ms to get response, and 1337 ms overall
17-03-18 03:30:06.234 -07 000000610 INF: Skipping AutoFocus in Tile 15: adopting Best-Z from the cache: -0.167723
17-03-18 03:30:06.234 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 71.5326 mm, moving Z to -0.16772 mm
17-03-18 03:30:06.234 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 03:30:06.244 -07 000000467 INF: Y Motor: Entering MoveAbsStepped (target = 114452 steps, sync = True, waitForSettling = True)
17-03-18 03:30:06.244 -07 000000467 INF: Y Motor: Moving to 71.5326 mm, started at 70.6885 mm, delta = 0.8441 mm
17-03-18 03:30:06.244 -07 000000579 INF: Z Motor: Entering MoveAbsStepped (DAC = 36639, sync = True, waitForSettling = False)
17-03-18 03:30:06.244 -07 000000579 INF: Z Motor: Moving to -0.167723 mm, started at -0.167002 mm, distance = -0.72 um
17-03-18 03:30:06.244 -07 000000467 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:30:06.244 -07 000000461 INF: FPGA: Recv YRDPOS 144770
17-03-18 03:30:06.254 -07 000000467 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:06.254 -07 000000579 INF: FPGA: Xmit ZDACW 36639\n [Z Motor]
17-03-18 03:30:06.254 -07 000000467 INF: Y Motor: Encoder = 144770 = motor step 113101.6 = 70.6885 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:30:06.254 -07 000000467 INF: Y Motor: Last commanded position = 70.7026 mm (113124.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 03:30:06.254 -07 000000467 INF: Y Motor: Moving 1351 steps-29
17-03-18 03:30:06.254 -07 000000461 INF: FPGA: Recv ZDACW
17-03-18 03:30:06.264 -07 000000579 INF: FPGA: 'ZDACW 36639' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 03:30:06.264 -07 000000579 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:30:06.264 -07 000000461 INF: FPGA: Recv ZDACR 36639
17-03-18 03:30:06.274 -07 000000467 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 03:30:06.274 -07 000000579 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:06.274 -07 000000579 INF: Z Motor: MoveAbsStepped took 29 ms (did NOT wait for settling yet))
17-03-18 03:30:06.434 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) end. Duration was 388 ms.
17-03-18 03:30:06.434 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-18 03:30:06.434 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:30:06.434 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:30:06.434 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 03:30:06.544 -07 000000444 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 370 ms.
17-03-18 03:30:06.544 -07 000000444 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 370 ms.
17-03-18 03:30:06.544 -07 000000444 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:30:06.544 -07 000000444 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:30:06.554 -07 000000444 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 508 ms.
17-03-18 03:30:06.574 -07 000000579 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 03:30:06.584 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 112. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1642, R2=1712, Total=3354. Warn if over 250 bubbles per interval.
17-03-18 03:30:06.644 -07 000000455 INF: FPGA: Recv YMVTILE
17-03-18 03:30:06.644 -07 000000467 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 03:30:06.694 -07 000000467 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:30:06.694 -07 000000512 INF: FPGA: Recv YRDPOS 146470
17-03-18 03:30:06.704 -07 000000467 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 03:30:06.704 -07 000000467 INF: Y Motor: Encoder = 146470 = motor step 114429.7 = 71.5186 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:30:06.704 -07 000000467 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-18 03:30:06.704 -07 000000467 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.844 mm, average velocity = 2.121 mm/sec
17-03-18 03:30:07.654 -07 000000467 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:30:07.654 -07 000000455 INF: FPGA: Recv YRDPOS 146471
17-03-18 03:30:07.664 -07 000000467 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:07.664 -07 000000467 INF: Y Motor: Encoder = 146471 = motor step 114430.5 = 71.5190 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:30:07.694 -07 000000467 INF: Y Motor: After move to 71.532608, error = -0.013565, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 03:30:07.694 -07 000000467 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 03:30:07.694 -07 000000467 INF: Y Motor: Moved to 71.5190 after 1449 ms (table move)
17-03-18 03:30:07.694 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.167723 mm (DAC = 36639)
17-03-18 03:30:07.694 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:07.694 -07 000000444 INF: FPGA: Recv ZSGSRD 35401
17-03-18 03:30:07.704 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 03:30:07.704 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:07.704 -07 000000461 INF: FPGA: Recv ZSGSRD 35395
17-03-18 03:30:07.714 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:07.714 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:07.714 -07 000000512 INF: FPGA: Recv ZSGSRD 35400
17-03-18 03:30:07.724 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:07.724 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:07.724 -07 000000461 INF: FPGA: Recv ZSGSRD 35400
17-03-18 03:30:07.734 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:07.734 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:07.734 -07 000000501 INF: FPGA: Recv ZSGSRD 35394
17-03-18 03:30:07.744 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:07.744 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:07.744 -07 000000512 INF: FPGA: Recv ZSGSRD 35398
17-03-18 03:30:07.754 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:07.754 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:07.754 -07 000000501 INF: FPGA: Recv ZSGSRD 35396
17-03-18 03:30:07.764 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:07.764 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:07.764 -07 000000461 INF: FPGA: Recv ZSGSRD 35393
17-03-18 03:30:07.774 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:07.774 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:07.774 -07 000000444 INF: FPGA: Recv ZSGSRD 35396
17-03-18 03:30:07.784 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:07.784 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:07.784 -07 000000512 INF: FPGA: Recv ZSGSRD 35399
17-03-18 03:30:07.794 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:07.794 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:30:07.794 -07 000000444 INF: FPGA: Recv ZPIEZORD 31165
17-03-18 03:30:07.804 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:07.804 -07 000000610 INF: Z Motor: Piezo is near 46.6 V (nominally 0 to 100 V), expect near 55.9 V, since DAC is at 5.591 V. Piezo Error = -9.3 V.
17-03-18 03:30:07.804 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.7 um, Read 10 ADC samples: Avg = 35397 (-166.9 uncal um), Error = 0.9 uncal um, Median = 35397 (-166.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35393 (-166.8 uncal um), Max = 35401 (-166.9 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 03:30:07.804 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35397, posNoise = 4, negNoise = 4
17-03-18 03:30:07.804 -07 000000610 INF: Z Motor: After move to -0.167723, error = 0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:30:07.804 -07 000000610 INF: Z Motor: Settle wait time = 1452 ms, measure time = 107 ms (allowed 150 ms), total time = 1559 ms
17-03-18 03:30:07.804 -07 000000610 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-18 03:30:07.854 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1611 ms
17-03-18 03:30:07.854 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 03:30:07.854 -07 000000610 INF: ------------ Scan Snapping tile 15 at Y-position 71.51904296875, Z-position -0.167721189193048. ----------
17-03-18 03:30:07.854 -07 000000610 INF: Cycle	113	Tile	15	Exposure Settings		A	406	G	195	T	195	C	406
17-03-18 03:30:07.854 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36462, sync = True, waitForSettling = True)
17-03-18 03:30:07.854 -07 000000610 INF: Z Motor: Moving to -0.166912 mm, started at -0.167721 mm, distance = 0.81 um
17-03-18 03:30:07.854 -07 000000610 INF: FPGA: Xmit ZDACW 36462\n [Z Motor]
17-03-18 03:30:07.854 -07 000000455 INF: FPGA: Recv ZDACW
17-03-18 03:30:07.864 -07 000000610 INF: FPGA: 'ZDACW 36462' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 03:30:07.864 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:30:07.864 -07 000000512 INF: FPGA: Recv ZDACR 36462
17-03-18 03:30:07.874 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:07.874 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 03:30:08.024 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:08.024 -07 000000461 INF: FPGA: Recv ZSGSRD 35275
17-03-18 03:30:08.034 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:30:08.034 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:08.034 -07 000000444 INF: FPGA: Recv ZSGSRD 35267
17-03-18 03:30:08.044 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:08.044 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:08.044 -07 000000467 INF: FPGA: Recv ZSGSRD 35275
17-03-18 03:30:08.054 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:08.054 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:08.054 -07 000000444 INF: FPGA: Recv ZSGSRD 35274
17-03-18 03:30:08.064 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:08.064 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:08.064 -07 000000467 INF: FPGA: Recv ZSGSRD 35275
17-03-18 03:30:08.074 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:08.074 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:08.074 -07 000000444 INF: FPGA: Recv ZSGSRD 35270
17-03-18 03:30:08.084 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:08.084 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:08.084 -07 000000579 INF: FPGA: Recv ZSGSRD 35271
17-03-18 03:30:08.094 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:08.094 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:08.094 -07 000000467 INF: FPGA: Recv ZSGSRD 35270
17-03-18 03:30:08.104 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:08.104 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:08.104 -07 000000461 INF: FPGA: Recv ZSGSRD 35274
17-03-18 03:30:08.114 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:08.124 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:08.124 -07 000000444 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 113, FrontChillerTemperature: 4.024884,
17-03-18 03:30:08.124 -07 000000444 INF: FPGA: Recv ZSGSRD 35273
17-03-18 03:30:08.134 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 03:30:08.154 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:30:08.154 -07 000000461 INF: FPGA: Recv ZPIEZORD 30997
17-03-18 03:30:08.164 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 03:30:08.164 -07 000000610 INF: Z Motor: Piezo is near 46.2 V (nominally 0 to 100 V), expect near 55.6 V, since DAC is at 5.564 V. Piezo Error = -9.4 V.
17-03-18 03:30:08.164 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.9 um, Read 10 ADC samples: Avg = 35272 (-166.1 uncal um), Error = 0.9 uncal um, Median = 35274 (-166.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35267 (-166.0 uncal um), Max = 35275 (-166.1 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 03:30:08.164 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35272, posNoise = 3, negNoise = 5
17-03-18 03:30:08.164 -07 000000610 INF: Z Motor: After move to -0.166912, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:30:08.164 -07 000000610 INF: Z Motor: MoveAbsStepped took 306 ms)
17-03-18 03:30:08.164 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:30:08.164 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:30:08.164 -07 000000455 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:30:08.164 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 03:30:08.164 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:30:08.164 -07 000000444 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:30:08.164 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 03:30:08.164 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 03:30:08.164 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 03:30:08.164 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 03:30:08.164 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 03:30:08.164 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 03:30:08.164 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 03:30:08.164 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 03:30:08.174 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 03:30:08.174 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 03:30:08.184 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 13 ms.
17-03-18 03:30:08.184 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 17 ms.
17-03-18 03:30:08.184 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 12 ms.
17-03-18 03:30:08.184 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 19 ms.
17-03-18 03:30:08.184 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 406 406 195 195 36639 150\n [Camera]
17-03-18 03:30:08.384 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 03:30:08.794 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 599
17-03-18 03:30:08.794 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 599
17-03-18 03:30:08.794 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:30:08.794 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 599
17-03-18 03:30:08.794 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 599
17-03-18 03:30:08.794 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:30:08.794 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:30:08.794 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 1458343128, 0x0, 391868352) start.
17-03-18 03:30:08.804 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:30:08.804 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 03:30:08.984 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36639 791
17-03-18 03:30:09.134 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP turning grn on 943
17-03-18 03:30:09.174 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 1458343128, 0x0, 391868352) end. Duration was 373 ms.
17-03-18 03:30:09.174 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 373 ms.
17-03-18 03:30:09.174 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:30:09.174 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:30:09.174 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-18 03:30:09.174 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 370 ms.
17-03-18 03:30:09.174 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 370 ms.
17-03-18 03:30:09.174 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:30:09.184 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:30:09.184 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-18 03:30:09.334 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1136
17-03-18 03:30:09.334 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1136
17-03-18 03:30:09.334 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:30:09.334 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1136
17-03-18 03:30:09.334 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1136
17-03-18 03:30:09.334 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:30:09.334 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:30:09.334 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 03:30:09.344 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:30:09.344 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) start.
17-03-18 03:30:09.524 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP 1328
17-03-18 03:30:09.524 -07 000000579 INF: FPGA: Recv CAMDBLSNAP
17-03-18 03:30:09.524 -07 000000610 INF: FPGA: 'CAMDBLSNAP 406 406 195 195 36639 150' command took 2 ms to send, 1332 ms to get response, and 1335 ms overall
17-03-18 03:30:09.524 -07 000000610 INF: Skipping AutoFocus in Tile 16: adopting Best-Z from the cache: -0.167322
17-03-18 03:30:09.524 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 72.3626 mm, moving Z to -0.16732 mm
17-03-18 03:30:09.524 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 03:30:09.524 -07 000000444 INF: Y Motor: Entering MoveAbsStepped (target = 115780 steps, sync = True, waitForSettling = True)
17-03-18 03:30:09.524 -07 000000444 INF: Y Motor: Moving to 72.3626 mm, started at 71.5190 mm, delta = 0.8436 mm
17-03-18 03:30:09.524 -07 000000444 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:30:09.524 -07 000000461 INF: Z Motor: Entering MoveAbsStepped (DAC = 36552, sync = True, waitForSettling = False)
17-03-18 03:30:09.524 -07 000000461 INF: Z Motor: Moving to -0.167324 mm, started at -0.166918 mm, distance = -0.41 um
17-03-18 03:30:09.524 -07 000000579 INF: FPGA: Recv YRDPOS 146471
17-03-18 03:30:09.534 -07 000000444 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 03:30:09.534 -07 000000444 INF: Y Motor: Encoder = 146471 = motor step 114430.5 = 71.5190 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:30:09.534 -07 000000444 INF: Y Motor: Last commanded position = 71.5326 mm (114452.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 03:30:09.534 -07 000000444 INF: Y Motor: Moving 1350 steps-29
17-03-18 03:30:09.534 -07 000000461 INF: FPGA: Xmit ZDACW 36552\n [Z Motor]
17-03-18 03:30:09.534 -07 000000579 INF: FPGA: Recv ZDACW
17-03-18 03:30:09.544 -07 000000461 INF: FPGA: 'ZDACW 36552' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-18 03:30:09.544 -07 000000461 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:30:09.544 -07 000000579 INF: FPGA: Recv ZDACR 36552
17-03-18 03:30:09.554 -07 000000444 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 03:30:09.554 -07 000000461 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:09.554 -07 000000461 INF: Z Motor: MoveAbsStepped took 23 ms (did NOT wait for settling yet))
17-03-18 03:30:09.714 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 381 ms.
17-03-18 03:30:09.714 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 381 ms.
17-03-18 03:30:09.714 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:30:09.724 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:30:09.724 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) end. Duration was 382 ms.
17-03-18 03:30:09.724 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-18 03:30:09.724 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:30:09.724 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:30:09.724 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 03:30:09.734 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 03:30:09.924 -07 000000579 INF: FPGA: Recv YMVTILE
17-03-18 03:30:09.924 -07 000000444 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 03:30:09.974 -07 000000444 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:30:09.974 -07 000000467 INF: FPGA: Recv YRDPOS 148172
17-03-18 03:30:09.984 -07 000000444 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 03:30:09.984 -07 000000444 INF: Y Motor: Encoder = 148172 = motor step 115759.4 = 72.3496 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:30:09.984 -07 000000444 INF: Y Motor: Position error before settling (table move) = -27 encoder counts (-0.013 mm)
17-03-18 03:30:09.984 -07 000000444 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.844 mm, average velocity = 2.120 mm/sec
17-03-18 03:30:10.934 -07 000000444 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:30:10.934 -07 000000579 INF: FPGA: Recv YRDPOS 148172
17-03-18 03:30:10.944 -07 000000444 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:30:10.944 -07 000000444 INF: Y Motor: Encoder = 148172 = motor step 115759.4 = 72.3496 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:30:10.964 -07 000000444 INF: Y Motor: After move to 72.362610, error = -0.013000, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 03:30:10.964 -07 000000444 INF: Y Motor: Position error after settling (table move) = -27 encoder counts (-0.013 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 03:30:10.964 -07 000000444 INF: Y Motor: Moved to 72.3496 after 1442 ms (table move)
17-03-18 03:30:10.974 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.167324 mm (DAC = 36552)
17-03-18 03:30:10.974 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:10.974 -07 000000467 INF: FPGA: Recv ZSGSRD 35333
17-03-18 03:30:10.984 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 03:30:10.984 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:10.984 -07 000000618 INF: FPGA: Recv ZSGSRD 35331
17-03-18 03:30:10.994 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:10.994 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:10.994 -07 000000626 INF: FPGA: Recv ZSGSRD 35338
17-03-18 03:30:11.004 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:11.004 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:11.004 -07 000000579 INF: FPGA: Recv ZSGSRD 35338
17-03-18 03:30:11.014 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:11.014 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:11.014 -07 000000462 INF: FPGA: Recv ZSGSRD 35338
17-03-18 03:30:11.024 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:11.024 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:11.024 -07 000000444 INF: FPGA: Recv ZSGSRD 35342
17-03-18 03:30:11.034 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:11.034 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:11.034 -07 000000461 INF: FPGA: Recv ZSGSRD 35335
17-03-18 03:30:11.044 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:11.044 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:11.044 -07 000000444 INF: FPGA: Recv ZSGSRD 35335
17-03-18 03:30:11.054 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:11.054 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:11.054 -07 000000467 INF: FPGA: Recv ZSGSRD 35335
17-03-18 03:30:11.064 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:11.064 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:11.064 -07 000000444 INF: FPGA: Recv ZSGSRD 35339
17-03-18 03:30:11.074 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:11.074 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:30:11.074 -07 000000618 INF: FPGA: Recv ZPIEZORD 31106
17-03-18 03:30:11.084 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:11.084 -07 000000610 INF: Z Motor: Piezo is near 46.5 V (nominally 0 to 100 V), expect near 55.8 V, since DAC is at 5.577 V. Piezo Error = -9.3 V.
17-03-18 03:30:11.084 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.3 um, Read 10 ADC samples: Avg = 35336 (-166.5 uncal um), Error = 0.9 uncal um, Median = 35336 (-166.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35331 (-166.4 uncal um), Max = 35342 (-166.5 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 03:30:11.084 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35336, posNoise = 6, negNoise = 5
17-03-18 03:30:11.084 -07 000000610 INF: Z Motor: After move to -0.167324, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:30:11.084 -07 000000610 INF: Z Motor: Settle wait time = 1444 ms, measure time = 109 ms (allowed 150 ms), total time = 1553 ms
17-03-18 03:30:11.084 -07 000000610 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-18 03:30:11.134 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1605 ms
17-03-18 03:30:11.134 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 03:30:11.134 -07 000000610 INF: ------------ Scan Snapping tile 16 at Y-position 72.349609375, Z-position -0.1673293122524. ----------
17-03-18 03:30:11.134 -07 000000610 INF: Cycle	113	Tile	16	Exposure Settings		A	406	G	195	T	195	C	406
17-03-18 03:30:11.134 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36375, sync = True, waitForSettling = True)
17-03-18 03:30:11.134 -07 000000610 INF: Z Motor: Moving to -0.166514 mm, started at -0.167329 mm, distance = 0.82 um
17-03-18 03:30:11.134 -07 000000610 INF: FPGA: Xmit ZDACW 36375\n [Z Motor]
17-03-18 03:30:11.134 -07 000000618 INF: FPGA: Recv ZDACW
17-03-18 03:30:11.144 -07 000000610 INF: FPGA: 'ZDACW 36375' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 03:30:11.144 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:30:11.144 -07 000000579 INF: FPGA: Recv ZDACR 36375
17-03-18 03:30:11.154 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:11.154 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 03:30:11.304 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:11.304 -07 000000462 INF: FPGA: Recv ZSGSRD 35213
17-03-18 03:30:11.314 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:30:11.314 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:11.314 -07 000000626 INF: FPGA: Recv ZSGSRD 35212
17-03-18 03:30:11.324 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:11.324 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:11.324 -07 000000461 INF: FPGA: Recv ZSGSRD 35213
17-03-18 03:30:11.334 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:11.334 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:11.334 -07 000000462 INF: FPGA: Recv ZSGSRD 35211
17-03-18 03:30:11.344 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:11.344 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:11.344 -07 000000467 INF: FPGA: Recv ZSGSRD 35209
17-03-18 03:30:11.354 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:11.354 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:11.354 -07 000000626 INF: FPGA: Recv ZSGSRD 35209
17-03-18 03:30:11.364 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:11.364 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:11.364 -07 000000462 INF: FPGA: Recv ZSGSRD 35210
17-03-18 03:30:11.374 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:11.374 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:11.374 -07 000000626 INF: FPGA: Recv ZSGSRD 35213
17-03-18 03:30:11.384 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:11.384 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:11.384 -07 000000444 INF: FPGA: Recv ZSGSRD 35211
17-03-18 03:30:11.394 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 03:30:11.394 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:11.394 -07 000000467 INF: FPGA: Recv ZSGSRD 35215
17-03-18 03:30:11.404 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:11.404 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:30:11.404 -07 000000579 INF: FPGA: Recv ZPIEZORD 30925
17-03-18 03:30:11.414 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:11.414 -07 000000610 INF: Z Motor: Piezo is near 46.1 V (nominally 0 to 100 V), expect near 55.5 V, since DAC is at 5.550 V. Piezo Error = -9.4 V.
17-03-18 03:30:11.414 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.5 um, Read 10 ADC samples: Avg = 35212 (-165.7 uncal um), Error = 0.8 uncal um, Median = 35212 (-165.7 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 35209 (-165.6 uncal um), Max = 35215 (-165.7 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 03:30:11.414 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35212, posNoise = 3, negNoise = 3
17-03-18 03:30:11.414 -07 000000610 INF: Z Motor: After move to -0.166514, error = -0.000019, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:30:11.414 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-18 03:30:11.414 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:30:11.414 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:30:11.414 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:30:11.414 -07 000000467 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:30:11.414 -07 000000461 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 03:30:11.414 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:30:11.414 -07 000000444 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 03:30:11.414 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 03:30:11.414 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 03:30:11.414 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 03:30:11.414 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 03:30:11.414 -07 000000444 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 03:30:11.414 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 03:30:11.414 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 03:30:11.424 -07 000000444 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 03:30:11.424 -07 000000444 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 03:30:11.434 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 03:30:11.434 -07 000000461 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 03:30:11.434 -07 000000444 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 03:30:11.434 -07 000000444 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 03:30:11.434 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 406 406 195 195 36552 150\n [Camera]
17-03-18 03:30:11.584 -07 000000618 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 03:30:11.584 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 112. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1642, R2=1712, Total=3354. Warn if over 250 bubbles per interval.
17-03-18 03:30:11.634 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 03:30:12.044 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 598
17-03-18 03:30:12.044 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 598
17-03-18 03:30:12.044 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:30:12.044 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 598
17-03-18 03:30:12.044 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 598
17-03-18 03:30:12.044 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:30:12.054 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:30:12.054 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 03:30:12.054 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:30:12.054 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 1458343128, 0x0, 418435064) start.
17-03-18 03:30:12.234 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36552 791
17-03-18 03:30:12.384 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP turning grn on 941
17-03-18 03:30:12.424 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 1458343128, 0x0, 418435064) end. Duration was 369 ms.
17-03-18 03:30:12.424 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 370 ms.
17-03-18 03:30:12.424 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:30:12.424 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 375 ms.
17-03-18 03:30:12.424 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 375 ms.
17-03-18 03:30:12.424 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:30:12.424 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 03:30:12.434 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 03:30:12.434 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-18 03:30:12.434 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-18 03:30:12.584 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1136
17-03-18 03:30:12.584 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1136
17-03-18 03:30:12.584 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:30:12.584 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:30:12.584 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 03:30:12.584 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1136
17-03-18 03:30:12.584 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1136
17-03-18 03:30:12.584 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:30:12.584 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:30:12.584 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 03:30:12.774 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP 1328
17-03-18 03:30:12.774 -07 000000618 INF: FPGA: Recv CAMDBLSNAP
17-03-18 03:30:12.774 -07 000000610 INF: FPGA: 'CAMDBLSNAP 406 406 195 195 36552 150' command took 2 ms to send, 1324 ms to get response, and 1335 ms overall
17-03-18 03:30:12.774 -07 000000610 INF: Skipping AutoFocus in Tile 17: adopting Best-Z from the cache: -0.167021
17-03-18 03:30:12.774 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 73.1926 mm, moving Z to -0.16702 mm
17-03-18 03:30:12.774 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 03:30:12.784 -07 000000444 INF: Y Motor: Entering MoveAbsStepped (target = 117108 steps, sync = True, waitForSettling = True)
17-03-18 03:30:12.784 -07 000000444 INF: Y Motor: Moving to 73.1926 mm, started at 72.3496 mm, delta = 0.8430 mm
17-03-18 03:30:12.784 -07 000000444 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:30:12.784 -07 000000618 INF: Z Motor: Entering MoveAbsStepped (DAC = 36486, sync = True, waitForSettling = False)
17-03-18 03:30:12.784 -07 000000618 INF: Z Motor: Moving to -0.167022 mm, started at -0.166533 mm, distance = -0.49 um
17-03-18 03:30:12.784 -07 000000461 INF: FPGA: Recv YRDPOS 148172
17-03-18 03:30:12.794 -07 000000618 INF: FPGA: Xmit ZDACW 36486\n [Z Motor]
17-03-18 03:30:12.794 -07 000000444 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 03:30:12.794 -07 000000444 INF: Y Motor: Encoder = 148172 = motor step 115759.4 = 72.3496 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:30:12.794 -07 000000444 INF: Y Motor: Last commanded position = 72.3626 mm (115780.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 03:30:12.794 -07 000000444 INF: Y Motor: Moving 1349 steps-27
17-03-18 03:30:12.794 -07 000000626 INF: FPGA: Recv ZDACW
17-03-18 03:30:12.804 -07 000000444 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 03:30:12.804 -07 000000618 INF: FPGA: 'ZDACW 36486' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-18 03:30:12.814 -07 000000618 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:30:12.814 -07 000000626 INF: FPGA: Recv ZDACR 36486
17-03-18 03:30:12.824 -07 000000618 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 03:30:12.824 -07 000000618 INF: Z Motor: MoveAbsStepped took 37 ms (did NOT wait for settling yet))
17-03-18 03:30:12.964 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 379 ms.
17-03-18 03:30:12.964 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-18 03:30:12.964 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:30:12.964 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 379 ms.
17-03-18 03:30:12.964 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-18 03:30:12.964 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:30:12.964 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:30:12.964 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-18 03:30:12.974 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:30:12.974 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-18 03:30:13.174 -07 000000618 INF: FPGA: Recv YMVTILE
17-03-18 03:30:13.174 -07 000000444 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-18 03:30:13.224 -07 000000444 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:30:13.234 -07 000000579 INF: FPGA: Recv YRDPOS 149865
17-03-18 03:30:13.234 -07 000000444 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 03:30:13.234 -07 000000444 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:30:13.234 -07 000000444 INF: Y Motor: Position error before settling (table move) = -33 encoder counts (-0.016 mm)
17-03-18 03:30:13.234 -07 000000444 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 387 ms, distance = 0.843 mm, average velocity = 2.178 mm/sec
17-03-18 03:30:13.504 -07 000000579 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 113, FrontChillerTemperature: 3.99219,
17-03-18 03:30:14.184 -07 000000444 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:30:14.184 -07 000000626 INF: FPGA: Recv YRDPOS 149865
17-03-18 03:30:14.194 -07 000000444 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:30:14.194 -07 000000444 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:30:14.214 -07 000000444 INF: Y Motor: After move to 73.192604, error = -0.016335, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 03:30:14.214 -07 000000444 INF: Y Motor: Position error after settling (table move) = -33 encoder counts (-0.016 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 03:30:14.214 -07 000000444 INF: Y Motor: Moved to 73.1763 after 1437 ms (table move)
17-03-18 03:30:14.224 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.167022 mm (DAC = 36486)
17-03-18 03:30:14.224 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:14.224 -07 000000618 INF: FPGA: Recv ZSGSRD 35286
17-03-18 03:30:14.234 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 03:30:14.234 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:14.234 -07 000000618 INF: FPGA: Recv ZSGSRD 35283
17-03-18 03:30:14.244 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:14.244 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:14.244 -07 000000444 INF: FPGA: Recv ZSGSRD 35297
17-03-18 03:30:14.254 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:14.254 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:14.254 -07 000000618 INF: FPGA: Recv ZSGSRD 35297
17-03-18 03:30:14.264 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:14.264 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:14.264 -07 000000579 INF: FPGA: Recv ZSGSRD 35287
17-03-18 03:30:14.274 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:14.274 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:14.274 -07 000000444 INF: FPGA: Recv ZSGSRD 35290
17-03-18 03:30:14.284 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:14.284 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:14.284 -07 000000561 INF: FPGA: Recv ZSGSRD 35291
17-03-18 03:30:14.294 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:14.294 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:14.294 -07 000000591 INF: FPGA: Recv ZSGSRD 35285
17-03-18 03:30:14.304 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:14.304 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:14.304 -07 000000561 INF: FPGA: Recv ZSGSRD 35286
17-03-18 03:30:14.314 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:14.314 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:14.314 -07 000000561 INF: FPGA: Recv ZSGSRD 35291
17-03-18 03:30:14.324 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:14.324 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:30:14.334 -07 000000591 INF: FPGA: Recv ZPIEZORD 31078
17-03-18 03:30:14.344 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 11 ms to send, 0 ms to get response, and 16 ms overall
17-03-18 03:30:14.344 -07 000000610 INF: Z Motor: Piezo is near 46.4 V (nominally 0 to 100 V), expect near 55.7 V, since DAC is at 5.567 V. Piezo Error = -9.3 V.
17-03-18 03:30:14.344 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.0 um, Read 10 ADC samples: Avg = 35289 (-166.2 uncal um), Error = 0.9 uncal um, Median = 35288 (-166.2 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 35283 (-166.1 uncal um), Max = 35297 (-166.2 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 03:30:14.344 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35289, posNoise = 8, negNoise = 6
17-03-18 03:30:14.344 -07 000000610 INF: Z Motor: After move to -0.167022, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:30:14.344 -07 000000610 INF: Z Motor: Settle wait time = 1439 ms, measure time = 118 ms (allowed 150 ms), total time = 1557 ms
17-03-18 03:30:14.344 -07 000000610 INF: Z Motor: Waiting extra 32 ms after reading position to reach expected total of 150 ms
17-03-18 03:30:14.384 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1602 ms
17-03-18 03:30:14.384 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 03:30:14.384 -07 000000610 INF: ------------ Scan Snapping tile 17 at Y-position 73.17626953125, Z-position -0.167027374281737. ----------
17-03-18 03:30:14.384 -07 000000610 INF: Cycle	113	Tile	17	Exposure Settings		A	406	G	195	T	195	C	406
17-03-18 03:30:14.384 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36309, sync = True, waitForSettling = True)
17-03-18 03:30:14.384 -07 000000610 INF: Z Motor: Moving to -0.166212 mm, started at -0.167027 mm, distance = 0.82 um
17-03-18 03:30:14.384 -07 000000610 INF: FPGA: Xmit ZDACW 36309\n [Z Motor]
17-03-18 03:30:14.384 -07 000000618 INF: FPGA: Recv ZDACW
17-03-18 03:30:14.394 -07 000000610 INF: FPGA: 'ZDACW 36309' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 03:30:14.394 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:30:14.394 -07 000000618 INF: FPGA: Recv ZDACR 36309
17-03-18 03:30:14.404 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:14.404 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 03:30:14.554 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:14.554 -07 000000430 INF: FPGA: Recv ZSGSRD 35165
17-03-18 03:30:14.564 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:30:14.564 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:14.564 -07 000000430 INF: FPGA: Recv ZSGSRD 35167
17-03-18 03:30:14.574 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:14.574 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:14.574 -07 000000430 INF: FPGA: Recv ZSGSRD 35167
17-03-18 03:30:14.584 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:14.584 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:14.584 -07 000000606 INF: FPGA: Recv ZSGSRD 35168
17-03-18 03:30:14.594 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:14.594 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:14.594 -07 000000606 INF: FPGA: Recv ZSGSRD 35161
17-03-18 03:30:14.604 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:14.604 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:14.604 -07 000000430 INF: FPGA: Recv ZSGSRD 35168
17-03-18 03:30:14.614 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:14.614 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:14.614 -07 000000430 INF: FPGA: Recv ZSGSRD 35166
17-03-18 03:30:14.624 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:14.624 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:14.624 -07 000000430 INF: FPGA: Recv ZSGSRD 35162
17-03-18 03:30:14.634 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:14.634 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:14.634 -07 000000430 INF: FPGA: Recv ZSGSRD 35165
17-03-18 03:30:14.644 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:14.644 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:14.644 -07 000000626 INF: FPGA: Recv ZSGSRD 35167
17-03-18 03:30:14.654 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:14.654 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:30:14.654 -07 000000430 INF: FPGA: Recv ZPIEZORD 30887
17-03-18 03:30:14.664 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:14.664 -07 000000610 INF: Z Motor: Piezo is near 46.0 V (nominally 0 to 100 V), expect near 55.4 V, since DAC is at 5.540 V. Piezo Error = -9.4 V.
17-03-18 03:30:14.664 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.2 um, Read 10 ADC samples: Avg = 35166 (-165.4 uncal um), Error = 0.8 uncal um, Median = 35166 (-165.4 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 35161 (-165.3 uncal um), Max = 35168 (-165.4 uncal um), Pos Noise = 2 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 03:30:14.664 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35166, posNoise = 2, negNoise = 5
17-03-18 03:30:14.664 -07 000000610 INF: Z Motor: After move to -0.166212, error = -0.000025, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:30:14.664 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-18 03:30:14.664 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:30:14.664 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:30:14.664 -07 000000444 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:30:14.664 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:30:14.664 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 03:30:14.664 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:30:14.664 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 03:30:14.664 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 03:30:14.664 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 03:30:14.664 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 03:30:14.664 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 03:30:14.664 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 03:30:14.664 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 03:30:14.664 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 03:30:14.674 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 03:30:14.674 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 03:30:14.684 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 03:30:14.684 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 03:30:14.684 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 03:30:14.684 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 03:30:14.684 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 406 406 195 195 36486 150\n [Camera]
17-03-18 03:30:14.884 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 03:30:15.294 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 599
17-03-18 03:30:15.294 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 599
17-03-18 03:30:15.294 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:30:15.294 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:30:15.294 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) start.
17-03-18 03:30:15.294 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 599
17-03-18 03:30:15.294 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 599
17-03-18 03:30:15.294 -07 000000629 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:30:15.414 -07 000000629 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:30:15.414 -07 000000629 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 03:30:15.484 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36486 791
17-03-18 03:30:15.634 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP turning grn on 944
17-03-18 03:30:15.674 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) end. Duration was 378 ms.
17-03-18 03:30:15.674 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-18 03:30:15.674 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:30:15.674 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:30:15.674 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-18 03:30:15.784 -07 000000629 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 371 ms.
17-03-18 03:30:15.784 -07 000000629 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 372 ms.
17-03-18 03:30:15.784 -07 000000629 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:30:15.794 -07 000000629 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 03:30:15.794 -07 000000629 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 498 ms.
17-03-18 03:30:15.834 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1136
17-03-18 03:30:15.834 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1136
17-03-18 03:30:15.834 -07 000000629 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:30:15.834 -07 000000629 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:30:15.834 -07 000000629 INF: Camera: sBCa_ReadImage(785074288, 1458343128, 0x0, 391868352) start.
17-03-18 03:30:15.834 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1136
17-03-18 03:30:15.834 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1136
17-03-18 03:30:15.834 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:30:15.844 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:30:15.844 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 03:30:16.024 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP 1328
17-03-18 03:30:16.024 -07 000000462 INF: FPGA: Recv CAMDBLSNAP
17-03-18 03:30:16.024 -07 000000610 INF: FPGA: 'CAMDBLSNAP 406 406 195 195 36486 150' command took 2 ms to send, 1323 ms to get response, and 1335 ms overall
17-03-18 03:30:16.024 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 03:30:16.024 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 18 at Y-position 73.17626953125, Z-Position -0.166237196188301. ------
17-03-18 03:30:16.024 -07 000000561 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 03:30:16.024 -07 000000591 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.0226 mm, moving Z to -0.17265 mm
17-03-18 03:30:16.024 -07 000000591 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 03:30:16.034 -07 000000626 INF: FPGA: Recv FOCMRRCUR 
17-03-18 03:30:16.034 -07 000000561 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 03:30:16.034 -07 000000561 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 03:30:16.034 -07 000000462 INF: Z Motor: Entering MoveAbsStepped (DAC = 37716, sync = True, waitForSettling = False)
17-03-18 03:30:16.034 -07 000000462 INF: Z Motor: Moving to -0.172653 mm, started at -0.166237 mm, distance = -6.42 um
17-03-18 03:30:16.034 -07 000000444 INF: Y Motor: Entering MoveAbsStepped (target = 118436 steps, sync = True, waitForSettling = True)
17-03-18 03:30:16.034 -07 000000444 INF: Y Motor: Moving to 74.0226 mm, started at 73.1763 mm, delta = 0.8463 mm
17-03-18 03:30:16.044 -07 000000444 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:30:16.044 -07 000000512 INF: FPGA: Recv YRDPOS 149865
17-03-18 03:30:16.054 -07 000000444 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-18 03:30:16.054 -07 000000444 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:30:16.054 -07 000000444 INF: Y Motor: Last commanded position = 73.1926 mm (117108.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 03:30:16.054 -07 000000444 INF: Y Motor: Moving 1354 steps-33
17-03-18 03:30:16.054 -07 000000462 INF: FPGA: Xmit ZDACW 37716\n [Z Motor]
17-03-18 03:30:16.054 -07 000000618 INF: FPGA: Recv ZDACW
17-03-18 03:30:16.064 -07 000000462 INF: FPGA: 'ZDACW 37716' command took 1 ms to send, 0 ms to get response, and 25 ms overall
17-03-18 03:30:16.064 -07 000000462 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:30:16.064 -07 000000501 INF: FPGA: Recv ZDACR 37716
17-03-18 03:30:16.074 -07 000000462 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:16.074 -07 000000462 INF: Z Motor: MoveAbsStepped took 35 ms (did NOT wait for settling yet))
17-03-18 03:30:16.074 -07 000000444 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 03:30:16.214 -07 000000629 INF: Camera: sBCa_ReadImage(785074288, 1458343128, 0x0, 391868352) end. Duration was 375 ms.
17-03-18 03:30:16.214 -07 000000629 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 375 ms.
17-03-18 03:30:16.214 -07 000000629 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:30:16.214 -07 000000629 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 03:30:16.214 -07 000000629 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-18 03:30:16.224 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 375 ms.
17-03-18 03:30:16.224 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-18 03:30:16.224 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:30:16.224 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:30:16.234 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-18 03:30:16.234 -07 000000626 INF: FPGA: Recv FOCMRRFOC
17-03-18 03:30:16.234 -07 000000561 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 197 ms to get response, and 204 ms overall
17-03-18 03:30:16.444 -07 000000512 INF: FPGA: Recv YMVTILE
17-03-18 03:30:16.454 -07 000000444 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 370 ms to get response, and 399 ms overall
17-03-18 03:30:16.484 -07 000000444 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:30:16.494 -07 000000606 INF: FPGA: Recv YRDPOS 151568
17-03-18 03:30:16.494 -07 000000444 INF: FPGA: 'YRDPOS' command took 0 ms to send, 3 ms to get response, and 4 ms overall
17-03-18 03:30:16.494 -07 000000444 INF: Y Motor: Encoder = 151568 = motor step 118412.5 = 74.0078 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:30:16.494 -07 000000444 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-18 03:30:16.494 -07 000000444 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 400 ms, distance = 0.846 mm, average velocity = 2.116 mm/sec
17-03-18 03:30:16.584 -07 000000606 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 03:30:16.584 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 112. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1642, R2=1712, Total=3354. Warn if over 250 bubbles per interval.
17-03-18 03:30:17.444 -07 000000444 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:30:17.444 -07 000000512 INF: FPGA: Recv YRDPOS 151569
17-03-18 03:30:17.454 -07 000000444 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:30:17.454 -07 000000444 INF: Y Motor: Encoder = 151569 = motor step 118413.3 = 74.0083 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:30:17.474 -07 000000444 INF: Y Motor: After move to 74.022606, error = -0.014305, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 03:30:17.474 -07 000000444 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 03:30:17.474 -07 000000444 INF: Y Motor: Moved to 74.0083 after 1437 ms (table move)
17-03-18 03:30:17.474 -07 000000591 INF: Z Motor: EndOfMoveAbsStepped: target = -0.172653 mm (DAC = 37716)
17-03-18 03:30:17.474 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:17.474 -07 000000606 INF: FPGA: Recv ZSGSRD 36170
17-03-18 03:30:17.484 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 03:30:17.484 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:17.484 -07 000000606 INF: FPGA: Recv ZSGSRD 36167
17-03-18 03:30:17.494 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:17.494 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:17.494 -07 000000444 INF: FPGA: Recv ZSGSRD 36163
17-03-18 03:30:17.504 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:17.504 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:17.504 -07 000000626 INF: FPGA: Recv ZSGSRD 36166
17-03-18 03:30:17.514 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:17.514 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:17.514 -07 000000444 INF: FPGA: Recv ZSGSRD 36170
17-03-18 03:30:17.524 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:17.524 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:17.524 -07 000000626 INF: FPGA: Recv ZSGSRD 36164
17-03-18 03:30:17.534 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:17.534 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:17.534 -07 000000444 INF: FPGA: Recv ZSGSRD 36165
17-03-18 03:30:17.544 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:17.544 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:17.544 -07 000000626 INF: FPGA: Recv ZSGSRD 36166
17-03-18 03:30:17.554 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:17.554 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:17.554 -07 000000606 INF: FPGA: Recv ZSGSRD 36166
17-03-18 03:30:17.564 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:17.564 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:17.564 -07 000000444 INF: FPGA: Recv ZSGSRD 36168
17-03-18 03:30:17.574 -07 000000591 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:17.574 -07 000000591 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:30:17.574 -07 000000606 INF: FPGA: Recv ZPIEZORD 32228
17-03-18 03:30:17.584 -07 000000591 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:17.584 -07 000000591 INF: Z Motor: Piezo is near 48.8 V (nominally 0 to 100 V), expect near 57.6 V, since DAC is at 5.755 V. Piezo Error = -8.7 V.
17-03-18 03:30:17.584 -07 000000591 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.7 um, Read 10 ADC samples: Avg = 36166 (-171.8 uncal um), Error = 0.9 uncal um, Median = 36166 (-171.8 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 36163 (-171.8 uncal um), Max = 36170 (-171.8 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 03:30:17.584 -07 000000591 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36166, posNoise = 4, negNoise = 3
17-03-18 03:30:17.584 -07 000000591 INF: Z Motor: After move to -0.172653, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:30:17.584 -07 000000591 INF: Z Motor: Settle wait time = 1441 ms, measure time = 105 ms (allowed 150 ms), total time = 1546 ms
17-03-18 03:30:17.584 -07 000000591 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 03:30:17.634 -07 000000591 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1601 ms
17-03-18 03:30:17.634 -07 000000591 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 03:30:17.634 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:30:17.634 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:30:17.634 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:30:17.634 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:30:17.634 -07 000000444 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 03:30:17.634 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:30:17.634 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 03:30:17.634 -07 000000444 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 03:30:17.634 -07 000000444 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 03:30:17.644 -07 000000444 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 03:30:17.654 -07 000000444 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-18 03:30:17.654 -07 000000444 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-18 03:30:17.654 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 03:30:17.704 -07 000000512 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 03:30:18.004 -07 000000591 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 03:30:18.004 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 03:30:18.004 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 03:30:18.004 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1424593000, 0x0, 559484976) start.
17-03-18 03:30:18.034 -07 000000444 INF: FPGA: Recv @CAMSNAP 380
17-03-18 03:30:18.044 -07 000000606 INF: FPGA: Recv CAMSNAP
17-03-18 03:30:18.044 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 380 ms to get response, and 384 ms overall
17-03-18 03:30:18.124 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1424593000, 0x0, 559484976) end. Duration was 126 ms.
17-03-18 03:30:18.124 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:30:18.134 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 03:30:18.134 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-18 03:30:18.144 -07 000000591 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 03:30:18.144 -07 000000512 INF: Autofocus start
17-03-18 03:30:18.144 -07 000000512 INF: MeasureProfile start
17-03-18 03:30:18.144 -07 000000606 INF: FPGA: Recv FOCMRRCUR 
17-03-18 03:30:18.154 -07 000000591 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 03:30:18.154 -07 000000591 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 03:30:18.154 -07 000000512 INF: MeasureProfile done
17-03-18 03:30:18.154 -07 000000512 INF: X=-48  Z correction [um]=-0.3191189
17-03-18 03:30:18.154 -07 000000512 INF: Autofocus finished
17-03-18 03:30:18.354 -07 000000512 INF: FPGA: Recv FOCMRRIMG
17-03-18 03:30:18.354 -07 000000591 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 03:30:18.354 -07 000000610 INF: ------------ Scan Snapping tile 18 at Y-position 74.00830078125, Z-position -0.172661408330062. ----------
17-03-18 03:30:18.354 -07 000000610 INF: Cycle	113	Tile	18	Exposure Settings		A	406	G	195	T	195	C	406
17-03-18 03:30:18.364 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36158, sync = True, waitForSettling = True)
17-03-18 03:30:18.364 -07 000000610 INF: Z Motor: Moving to -0.165521 mm, started at -0.172661 mm, distance = 7.14 um
17-03-18 03:30:18.364 -07 000000610 INF: FPGA: Xmit ZDACW 36158\n [Z Motor]
17-03-18 03:30:18.364 -07 000000626 INF: FPGA: Recv ZDACW
17-03-18 03:30:18.374 -07 000000610 INF: FPGA: 'ZDACW 36158' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:18.374 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:30:18.374 -07 000000444 INF: FPGA: Recv ZDACR 36158
17-03-18 03:30:18.384 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:18.384 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 03:30:18.534 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:18.534 -07 000000444 INF: FPGA: Recv ZSGSRD 35057
17-03-18 03:30:18.544 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:30:18.554 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:18.554 -07 000000444 INF: FPGA: Recv ZSGSRD 35055
17-03-18 03:30:18.564 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-18 03:30:18.564 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:18.564 -07 000000512 INF: FPGA: Recv ZSGSRD 35054
17-03-18 03:30:18.574 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:18.574 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:18.574 -07 000000512 INF: FPGA: Recv ZSGSRD 35058
17-03-18 03:30:18.584 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:18.584 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:18.584 -07 000000512 INF: FPGA: Recv ZSGSRD 35054
17-03-18 03:30:18.594 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:18.594 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:18.594 -07 000000626 INF: FPGA: Recv ZSGSRD 35052
17-03-18 03:30:18.604 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:18.604 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:18.604 -07 000000626 INF: FPGA: Recv ZSGSRD 35058
17-03-18 03:30:18.614 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:18.614 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:18.614 -07 000000591 INF: FPGA: Recv ZSGSRD 35057
17-03-18 03:30:18.624 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:18.624 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:18.624 -07 000000591 INF: FPGA: Recv ZSGSRD 35058
17-03-18 03:30:18.634 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:18.634 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:18.634 -07 000000591 INF: FPGA: Recv ZSGSRD 35055
17-03-18 03:30:18.644 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:18.644 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:30:18.644 -07 000000591 INF: FPGA: Recv ZPIEZORD 30757
17-03-18 03:30:18.654 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:18.654 -07 000000610 INF: Z Motor: Piezo is near 45.7 V (nominally 0 to 100 V), expect near 55.2 V, since DAC is at 5.517 V. Piezo Error = -9.5 V.
17-03-18 03:30:18.654 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -165.5 um, Read 10 ADC samples: Avg = 35056 (-164.7 uncal um), Error = 0.9 uncal um, Median = 35056 (-164.7 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 35052 (-164.6 uncal um), Max = 35058 (-164.7 uncal um), Pos Noise = 2 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 03:30:18.654 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35056, posNoise = 2, negNoise = 4
17-03-18 03:30:18.654 -07 000000610 INF: Z Motor: After move to -0.165521, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:30:18.654 -07 000000610 INF: Z Motor: MoveAbsStepped took 291 ms)
17-03-18 03:30:18.654 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:30:18.654 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:30:18.654 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:30:18.654 -07 000000444 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:30:18.654 -07 000000606 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 03:30:18.654 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:30:18.654 -07 000000591 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 03:30:18.654 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 03:30:18.654 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 03:30:18.654 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 03:30:18.654 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 03:30:18.654 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 03:30:18.654 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 03:30:18.654 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 03:30:18.664 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 03:30:18.664 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 03:30:18.664 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 03:30:18.674 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 03:30:18.674 -07 000000591 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 03:30:18.674 -07 000000606 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 03:30:18.674 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 406 406 195 195 36335 150\n [Camera]
17-03-18 03:30:18.864 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 113, FrontChillerTemperature: 3.990831,
17-03-18 03:30:18.874 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 03:30:19.274 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 598
17-03-18 03:30:19.274 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 598
17-03-18 03:30:19.274 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:30:19.284 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:30:19.284 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 03:30:19.284 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 598
17-03-18 03:30:19.284 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 598
17-03-18 03:30:19.284 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:30:19.284 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:30:19.284 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) start.
17-03-18 03:30:19.474 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36335 791
17-03-18 03:30:19.624 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP turning grn on 941
17-03-18 03:30:19.664 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 382 ms.
17-03-18 03:30:19.664 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-18 03:30:19.664 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:30:19.664 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) end. Duration was 383 ms.
17-03-18 03:30:19.664 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 383 ms.
17-03-18 03:30:19.664 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:30:19.664 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:30:19.664 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-18 03:30:19.674 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:30:19.674 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-18 03:30:19.814 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1136
17-03-18 03:30:19.814 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1136
17-03-18 03:30:19.814 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:30:19.814 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1136
17-03-18 03:30:19.814 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1136
17-03-18 03:30:19.824 -07 000000444 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:30:19.824 -07 000000444 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:30:19.824 -07 000000444 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-18 03:30:19.824 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:30:19.824 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-18 03:30:20.004 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP 1328
17-03-18 03:30:20.004 -07 000000561 INF: FPGA: Recv CAMDBLSNAP
17-03-18 03:30:20.004 -07 000000610 INF: FPGA: 'CAMDBLSNAP 406 406 195 195 36335 150' command took 2 ms to send, 1328 ms to get response, and 1335 ms overall
17-03-18 03:30:20.014 -07 000000610 INF: Skipping AutoFocus in Tile 19: adopting Best-Z from the cache: -0.165365
17-03-18 03:30:20.014 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.8526 mm, moving Z to -0.16536 mm
17-03-18 03:30:20.014 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 03:30:20.014 -07 000000467 INF: Y Motor: Entering MoveAbsStepped (target = 119764 steps, sync = True, waitForSettling = True)
17-03-18 03:30:20.014 -07 000000467 INF: Y Motor: Moving to 74.8526 mm, started at 74.0083 mm, delta = 0.8443 mm
17-03-18 03:30:20.014 -07 000000606 INF: Z Motor: Entering MoveAbsStepped (DAC = 36124, sync = True, waitForSettling = False)
17-03-18 03:30:20.014 -07 000000606 INF: Z Motor: Moving to -0.165365 mm, started at -0.165531 mm, distance = 0.17 um
17-03-18 03:30:20.014 -07 000000467 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:30:20.014 -07 000000579 INF: FPGA: Recv YRDPOS 151569
17-03-18 03:30:20.024 -07 000000467 INF: FPGA: 'YRDPOS' command took 1 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 03:30:20.024 -07 000000467 INF: Y Motor: Encoder = 151569 = motor step 118413.3 = 74.0083 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:30:20.024 -07 000000467 INF: Y Motor: Last commanded position = 74.0226 mm (118436.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 03:30:20.024 -07 000000467 INF: Y Motor: Moving 1351 steps-30
17-03-18 03:30:20.024 -07 000000606 INF: FPGA: Xmit ZDACW 36124\n [Z Motor]
17-03-18 03:30:20.024 -07 000000579 INF: FPGA: Recv ZDACW
17-03-18 03:30:20.034 -07 000000606 INF: FPGA: 'ZDACW 36124' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-18 03:30:20.034 -07 000000467 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 03:30:20.044 -07 000000606 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:30:20.044 -07 000000626 INF: FPGA: Recv ZDACR 36124
17-03-18 03:30:20.054 -07 000000606 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 03:30:20.054 -07 000000606 INF: Z Motor: MoveAbsStepped took 36 ms (did NOT wait for settling yet))
17-03-18 03:30:20.204 -07 000000444 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 384 ms.
17-03-18 03:30:20.204 -07 000000444 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-18 03:30:20.204 -07 000000444 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:30:20.204 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 385 ms.
17-03-18 03:30:20.204 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-18 03:30:20.204 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:30:20.214 -07 000000444 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 03:30:20.214 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 03:30:20.214 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-18 03:30:20.214 -07 000000444 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 03:30:20.404 -07 000000626 INF: FPGA: Recv YMVTILE
17-03-18 03:30:20.404 -07 000000467 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-18 03:30:20.434 -07 000000467 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:30:20.444 -07 000000591 INF: FPGA: Recv YRDPOS 153255
17-03-18 03:30:20.444 -07 000000467 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 03:30:20.444 -07 000000467 INF: Y Motor: Encoder = 153255 = motor step 119730.5 = 74.8315 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:30:20.444 -07 000000467 INF: Y Motor: Position error before settling (table move) = -43 encoder counts (-0.021 mm)
17-03-18 03:30:20.444 -07 000000467 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.844 mm, average velocity = 2.176 mm/sec
17-03-18 03:30:21.394 -07 000000467 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:30:21.394 -07 000000591 INF: FPGA: Recv YRDPOS 153256
17-03-18 03:30:21.404 -07 000000467 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:30:21.404 -07 000000467 INF: Y Motor: Encoder = 153256 = motor step 119731.3 = 74.8320 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:30:21.414 -07 000000467 INF: Y Motor: After move to 74.852608, error = -0.020576, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 03:30:21.414 -07 000000467 INF: Y Motor: Position error after settling (table move) = -42 encoder counts (-0.021 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 03:30:21.424 -07 000000467 INF: Y Motor: Moved to 74.8320 after 1406 ms (table move)
17-03-18 03:30:21.424 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.165365 mm (DAC = 36124)
17-03-18 03:30:21.424 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:21.424 -07 000000591 INF: FPGA: Recv ZSGSRD 35033
17-03-18 03:30:21.434 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 03:30:21.434 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:21.434 -07 000000561 INF: FPGA: Recv ZSGSRD 35036
17-03-18 03:30:21.444 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:21.444 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:21.444 -07 000000591 INF: FPGA: Recv ZSGSRD 35030
17-03-18 03:30:21.454 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:21.454 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:21.454 -07 000000626 INF: FPGA: Recv ZSGSRD 35025
17-03-18 03:30:21.464 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:21.464 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:21.464 -07 000000579 INF: FPGA: Recv ZSGSRD 35033
17-03-18 03:30:21.474 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:21.474 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:21.474 -07 000000561 INF: FPGA: Recv ZSGSRD 35039
17-03-18 03:30:21.484 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:21.484 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:21.484 -07 000000561 INF: FPGA: Recv ZSGSRD 35036
17-03-18 03:30:21.494 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:21.494 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:21.494 -07 000000579 INF: FPGA: Recv ZSGSRD 35033
17-03-18 03:30:21.504 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 03:30:21.504 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:21.504 -07 000000591 INF: FPGA: Recv ZSGSRD 35032
17-03-18 03:30:21.514 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:21.514 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:21.514 -07 000000591 INF: FPGA: Recv ZSGSRD 35031
17-03-18 03:30:21.524 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:21.524 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:30:21.524 -07 000000467 INF: FPGA: Recv ZPIEZORD 30759
17-03-18 03:30:21.534 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:21.534 -07 000000610 INF: Z Motor: Piezo is near 45.7 V (nominally 0 to 100 V), expect near 55.1 V, since DAC is at 5.512 V. Piezo Error = -9.4 V.
17-03-18 03:30:21.534 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -165.4 um, Read 10 ADC samples: Avg = 35033 (-164.5 uncal um), Error = 0.8 uncal um, Median = 35033 (-164.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 35025 (-164.5 uncal um), Max = 35039 (-164.6 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 03:30:21.534 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35033, posNoise = 6, negNoise = 8
17-03-18 03:30:21.534 -07 000000610 INF: Z Motor: After move to -0.165365, error = -0.000018, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:30:21.534 -07 000000610 INF: Z Motor: Settle wait time = 1408 ms, measure time = 108 ms (allowed 150 ms), total time = 1516 ms
17-03-18 03:30:21.534 -07 000000610 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-18 03:30:21.584 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1568 ms
17-03-18 03:30:21.584 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 03:30:21.584 -07 000000561 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 03:30:21.584 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 112. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1642, R2=1712, Total=3354. Warn if over 250 bubbles per interval.
17-03-18 03:30:21.584 -07 000000610 INF: ------------ Scan Snapping tile 19 at Y-position 74.83203125, Z-position -0.165382775973447. ----------
17-03-18 03:30:21.584 -07 000000610 INF: Cycle	113	Tile	19	Exposure Settings		A	406	G	195	T	195	C	406
17-03-18 03:30:21.584 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 35947, sync = True, waitForSettling = True)
17-03-18 03:30:21.584 -07 000000610 INF: Z Motor: Moving to -0.164555 mm, started at -0.165383 mm, distance = 0.83 um
17-03-18 03:30:21.584 -07 000000610 INF: FPGA: Xmit ZDACW 35947\n [Z Motor]
17-03-18 03:30:21.584 -07 000000591 INF: FPGA: Recv ZDACW
17-03-18 03:30:21.594 -07 000000610 INF: FPGA: 'ZDACW 35947' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 03:30:21.594 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:30:21.594 -07 000000591 INF: FPGA: Recv ZDACR 35947
17-03-18 03:30:21.604 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:21.604 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 03:30:21.754 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:21.754 -07 000000591 INF: FPGA: Recv ZSGSRD 34901
17-03-18 03:30:21.764 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:21.764 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:21.764 -07 000000591 INF: FPGA: Recv ZSGSRD 34909
17-03-18 03:30:21.774 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:21.774 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:21.774 -07 000000591 INF: FPGA: Recv ZSGSRD 34902
17-03-18 03:30:21.784 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:21.784 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:21.784 -07 000000591 INF: FPGA: Recv ZSGSRD 34904
17-03-18 03:30:21.794 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:21.794 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:21.794 -07 000000591 INF: FPGA: Recv ZSGSRD 34902
17-03-18 03:30:21.804 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:21.804 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:21.804 -07 000000591 INF: FPGA: Recv ZSGSRD 34908
17-03-18 03:30:21.814 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:21.814 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:21.814 -07 000000561 INF: FPGA: Recv ZSGSRD 34901
17-03-18 03:30:21.824 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:21.824 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:21.824 -07 000000561 INF: FPGA: Recv ZSGSRD 34899
17-03-18 03:30:21.834 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:21.834 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:21.834 -07 000000626 INF: FPGA: Recv ZSGSRD 34906
17-03-18 03:30:21.844 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:21.844 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:21.844 -07 000000626 INF: FPGA: Recv ZSGSRD 34902
17-03-18 03:30:21.854 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:21.854 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:30:21.854 -07 000000591 INF: FPGA: Recv ZPIEZORD 30578
17-03-18 03:30:21.864 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:21.864 -07 000000610 INF: Z Motor: Piezo is near 45.3 V (nominally 0 to 100 V), expect near 54.9 V, since DAC is at 5.485 V. Piezo Error = -9.5 V.
17-03-18 03:30:21.864 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -164.6 um, Read 10 ADC samples: Avg = 34903 (-163.7 uncal um), Error = 0.9 uncal um, Median = 34902 (-163.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 34899 (-163.7 uncal um), Max = 34909 (-163.7 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 03:30:21.864 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 34903, posNoise = 6, negNoise = 4
17-03-18 03:30:21.864 -07 000000610 INF: Z Motor: After move to -0.164555, error = 0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:30:21.864 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-18 03:30:21.864 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:30:21.864 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:30:21.864 -07 000000467 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:30:21.864 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:30:21.864 -07 000000591 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 03:30:21.864 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 03:30:21.864 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 03:30:21.864 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:30:21.864 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 03:30:21.864 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 03:30:21.864 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 03:30:21.864 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 03:30:21.874 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 03:30:21.874 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 03:30:21.874 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 03:30:21.874 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 03:30:21.874 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 03:30:21.874 -07 000000591 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 03:30:21.884 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 03:30:21.884 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 03:30:21.884 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 406 406 195 195 36124 150\n [Camera]
17-03-18 03:30:22.084 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 03:30:22.484 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 598
17-03-18 03:30:22.484 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 598
17-03-18 03:30:22.484 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:30:22.484 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:30:22.484 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-18 03:30:22.494 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 598
17-03-18 03:30:22.494 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 598
17-03-18 03:30:22.494 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:30:22.494 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:30:22.494 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-18 03:30:22.684 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36124 791
17-03-18 03:30:22.834 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP turning grn on 941
17-03-18 03:30:22.874 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 382 ms.
17-03-18 03:30:22.874 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-18 03:30:22.874 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:30:22.874 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 386 ms.
17-03-18 03:30:22.874 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-18 03:30:22.874 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:30:22.874 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 03:30:22.884 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 03:30:22.884 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-18 03:30:22.884 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-18 03:30:23.024 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1136
17-03-18 03:30:23.024 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1136
17-03-18 03:30:23.024 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:30:23.154 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1136
17-03-18 03:30:23.154 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1136
17-03-18 03:30:23.154 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:30:23.154 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:30:23.154 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 03:30:23.154 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:30:23.154 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 1458343128, 0x0, 418435064) start.
17-03-18 03:30:23.214 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP 1328
17-03-18 03:30:23.214 -07 000000561 INF: FPGA: Recv CAMDBLSNAP
17-03-18 03:30:23.214 -07 000000610 INF: FPGA: 'CAMDBLSNAP 406 406 195 195 36124 150' command took 4 ms to send, 1328 ms to get response, and 1335 ms overall
17-03-18 03:30:23.534 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 1458343128, 0x0, 418435064) end. Duration was 379 ms.
17-03-18 03:30:23.534 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-18 03:30:23.534 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:30:23.534 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 382 ms.
17-03-18 03:30:23.534 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-18 03:30:23.534 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:30:23.544 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 03:30:23.544 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 03:30:23.544 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 516 ms.
17-03-18 03:30:23.544 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) start.
17-03-18 03:30:23.544 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-18 03:30:23.584 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) end. Duration was 42 ms.
17-03-18 03:30:23.584 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) start.
17-03-18 03:30:23.624 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) end. Duration was 42 ms.
17-03-18 03:30:23.634 -07 000000610 INF: Move compensator for Bottom-surface imaging.
17-03-18 03:30:23.634 -07 000000610 INF: FPGA: Xmit EMCUR 80\n [Compensator]
17-03-18 03:30:23.634 -07 000000618 INF: FPGA: Recv EMCUR 
17-03-18 03:30:23.644 -07 000000610 INF: FPGA: 'EMCUR 80' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 03:30:23.644 -07 000000610 INF: FPGA: Xmit EMIN 20 40\n [Compensator]
17-03-18 03:30:24.144 -07 000000461 INF: FPGA: Recv EMIN
17-03-18 03:30:24.144 -07 000000610 INF: FPGA: 'EMIN 20 40' command took 0 ms to send, 493 ms to get response, and 502 ms overall
17-03-18 03:30:24.144 -07 000000610 INF: FPGA: Xmit EMCUR 60\n [Compensator]
17-03-18 03:30:24.144 -07 000000591 INF: FPGA: Recv EMCUR 
17-03-18 03:30:24.154 -07 000000610 INF: FPGA: 'EMCUR 60' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 03:30:24.154 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 03:30:24.154 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 1 at Y-position 74.83203125, Z-Position -0.164547628395018. ------
17-03-18 03:30:24.154 -07 000000430 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 03:30:24.154 -07 000000629 INF: Y Motor: MoveYZ optimized starting. Moving Y to 59.9126 mm, moving Z to -0.13948 mm
17-03-18 03:30:24.154 -07 000000629 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 03:30:24.154 -07 000000591 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True)
17-03-18 03:30:24.154 -07 000000591 INF: Y Motor: Moving to 59.9126 mm, started at 74.8320 mm, delta = -14.9194 mm
17-03-18 03:30:24.154 -07 000000461 INF: Z Motor: Entering MoveAbsStepped (DAC = 30470, sync = True, waitForSettling = False)
17-03-18 03:30:24.154 -07 000000461 INF: Z Motor: Moving to -0.139483 mm, started at -0.164548 mm, distance = 25.06 um
17-03-18 03:30:24.154 -07 000000579 INF: FPGA: Recv FOCMRRCUR 
17-03-18 03:30:24.164 -07 000000430 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 03:30:24.164 -07 000000461 INF: FPGA: Xmit ZDACW 30470\n [Z Motor]
17-03-18 03:30:24.164 -07 000000561 INF: FPGA: Recv ZDACW
17-03-18 03:30:24.174 -07 000000461 INF: FPGA: 'ZDACW 30470' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:30:24.174 -07 000000591 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:30:24.174 -07 000000467 INF: FPGA: Recv YRDPOS 153257
17-03-18 03:30:24.184 -07 000000591 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 20 ms overall
17-03-18 03:30:24.184 -07 000000430 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 03:30:24.184 -07 000000591 INF: Y Motor: Encoder = 153257 = motor step 119732.0 = 74.8325 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:30:24.184 -07 000000591 INF: Y Motor: Last commanded position = 74.8526 mm (119764.2 steps), delta from last commanded position = -14.9400 mm (-23904.0 steps). UsingTableMove = False
17-03-18 03:30:24.184 -07 000000591 INF: Y Motor: Moving to 122701 encoder counts
17-03-18 03:30:24.194 -07 000000461 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:30:24.194 -07 000000501 INF: FPGA: Recv ZDACR 30470
17-03-18 03:30:24.204 -07 000000461 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 03:30:24.204 -07 000000461 INF: Z Motor: MoveAbsStepped took 40 ms (did NOT wait for settling yet))
17-03-18 03:30:24.204 -07 000000591 INF: FPGA: Xmit YMVTO 122701\n [Y Motor]
17-03-18 03:30:24.224 -07 000000455 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 113, FrontChillerTemperature: 4.005817,
17-03-18 03:30:24.384 -07 000000461 INF: FPGA: Recv FOCMRRFOC
17-03-18 03:30:24.384 -07 000000430 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 03:30:25.824 -07 000000618 INF: FPGA: Recv YMVTO 122703 23904
17-03-18 03:30:25.824 -07 000000591 INF: FPGA: 'YMVTO 122701' command took 0 ms to send, 1619 ms to get response, and 1644 ms overall
17-03-18 03:30:25.824 -07 000000591 INF: Y Motor: Position error before settling = 2 encoder counts (0.001 mm)
17-03-18 03:30:25.824 -07 000000591 INF: Y Motor: To move from 74.833 to 59.913 (-14.919 mm) should take 23872 steps, but required 23904 steps (14.940 mm). Slippage = 0.020 mm (0.00%).
17-03-18 03:30:25.824 -07 000000591 INF: Y Motor: FPGA move command 'YMVTO 122701' took 1644 ms, distance = 14.919 mm, average velocity = 9.075 mm/sec
17-03-18 03:30:26.584 -07 000000561 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 03:30:26.584 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 112. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1642, R2=1712, Total=3354. Warn if over 250 bubbles per interval.
17-03-18 03:30:28.674 -07 000000591 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:30:28.674 -07 000000579 INF: FPGA: Recv YRDPOS 122697
17-03-18 03:30:28.684 -07 000000591 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:28.684 -07 000000591 INF: Y Motor: Encoder = 122697 = motor step 95857.0 = 59.9106 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:30:28.714 -07 000000591 INF: Y Motor: After move to 59.912609, error = -0.001965, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 03:30:28.714 -07 000000591 INF: Y Motor: Position error after settling = -4 encoder counts (-0.002 mm), Delta during settling = -6 counts (-0.003 mm)
17-03-18 03:30:28.714 -07 000000591 INF: Y Motor: Moved to 59.9106 after 4560 ms
17-03-18 03:30:28.724 -07 000000629 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139483 mm (DAC = 30470)
17-03-18 03:30:28.724 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:28.724 -07 000000618 INF: FPGA: Recv ZSGSRD 31001
17-03-18 03:30:28.734 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 03:30:28.734 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:28.734 -07 000000461 INF: FPGA: Recv ZSGSRD 31005
17-03-18 03:30:28.744 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:28.744 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:28.744 -07 000000461 INF: FPGA: Recv ZSGSRD 31004
17-03-18 03:30:28.754 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:28.754 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:28.754 -07 000000579 INF: FPGA: Recv ZSGSRD 31004
17-03-18 03:30:28.764 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:28.764 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:28.764 -07 000000579 INF: FPGA: Recv ZSGSRD 30999
17-03-18 03:30:28.774 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:28.774 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:28.774 -07 000000461 INF: FPGA: Recv ZSGSRD 30995
17-03-18 03:30:28.784 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:28.784 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:28.784 -07 000000461 INF: FPGA: Recv ZSGSRD 31007
17-03-18 03:30:28.794 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:28.794 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:28.794 -07 000000561 INF: FPGA: Recv ZSGSRD 31001
17-03-18 03:30:28.804 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:28.804 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:28.804 -07 000000579 INF: FPGA: Recv ZSGSRD 31000
17-03-18 03:30:28.814 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:28.814 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:28.814 -07 000000579 INF: FPGA: Recv ZSGSRD 31007
17-03-18 03:30:28.824 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:28.824 -07 000000629 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:30:28.824 -07 000000579 INF: FPGA: Recv ZPIEZORD 26496
17-03-18 03:30:28.834 -07 000000629 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:28.834 -07 000000629 INF: Z Motor: Piezo is near 36.6 V (nominally 0 to 100 V), expect near 46.5 V, since DAC is at 4.649 V. Piezo Error = -9.9 V.
17-03-18 03:30:28.834 -07 000000629 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.5 um, Read 10 ADC samples: Avg = 31002 (-138.7 uncal um), Error = 0.8 uncal um, Median = 31002 (-138.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 30995 (-138.6 uncal um), Max = 31007 (-138.7 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 03:30:28.834 -07 000000629 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 31002, posNoise = 5, negNoise = 7
17-03-18 03:30:28.834 -07 000000629 INF: Z Motor: After move to -0.139483, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:30:28.834 -07 000000629 INF: Z Motor: Settle wait time = 4563 ms, measure time = 108 ms (allowed 150 ms), total time = 4671 ms
17-03-18 03:30:28.834 -07 000000629 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-18 03:30:28.884 -07 000000629 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 4723 ms
17-03-18 03:30:28.884 -07 000000629 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 03:30:28.884 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:30:28.884 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:30:28.884 -07 000000579 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:30:28.884 -07 000000461 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:30:28.884 -07 000000561 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 03:30:28.884 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:30:28.884 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 03:30:28.884 -07 000000561 INF: Camera: sBCa_SetPowerMode(785074288, 1) start.
17-03-18 03:30:28.904 -07 000000561 INF: Camera: sBCa_SetPowerMode(785074288, 1) end. Duration was 20 ms.
17-03-18 03:30:28.904 -07 000000561 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 03:30:28.914 -07 000000561 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 03:30:28.914 -07 000000561 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 03:30:28.914 -07 000000561 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 03:30:28.914 -07 000000561 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 30 ms.
17-03-18 03:30:28.924 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 03:30:28.964 -07 000000629 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 03:30:29.264 -07 000000561 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 03:30:29.264 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 03:30:29.274 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 03:30:29.274 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1424593000, 0x0, 559484976) start.
17-03-18 03:30:29.304 -07 000000461 INF: FPGA: Recv @CAMSNAP 380
17-03-18 03:30:29.304 -07 000000561 INF: FPGA: Recv CAMSNAP
17-03-18 03:30:29.304 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 03:30:29.384 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1424593000, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 03:30:29.384 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:30:29.384 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 03:30:29.384 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 03:30:29.404 -07 000000461 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 03:30:29.404 -07 000000561 INF: Image SNR check: start
17-03-18 03:30:29.404 -07 000000629 INF: FPGA: Recv FOCMRRCUR 
17-03-18 03:30:29.414 -07 000000461 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 03:30:29.414 -07 000000461 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 03:30:29.424 -07 000000561 INF: Image SNR check: pass  [peak (Max-Min)=138.25]
17-03-18 03:30:29.424 -07 000000561 INF: Autofocus start
17-03-18 03:30:29.424 -07 000000561 INF: MeasureProfile start
17-03-18 03:30:29.434 -07 000000561 INF: MeasureProfile done
17-03-18 03:30:29.434 -07 000000561 INF: X=16  Z correction [um]=0.0530179
17-03-18 03:30:29.434 -07 000000561 INF: Autofocus finished
17-03-18 03:30:29.584 -07 000000629 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 113, FrontChillerTemperature: 3.98264,
17-03-18 03:30:29.614 -07 000000629 INF: FPGA: Recv FOCMRRIMG
17-03-18 03:30:29.614 -07 000000461 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 204 ms overall
17-03-18 03:30:29.614 -07 000000610 INF: ------------ Scan Snapping tile 1 at Y-position 59.91064453125, Z-position -0.139486776830008. ----------
17-03-18 03:30:29.614 -07 000000610 INF: Cycle	113	Tile	1	Exposure Settings		A	406	G	195	T	195	C	406
17-03-18 03:30:29.624 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28994, sync = True, waitForSettling = True)
17-03-18 03:30:29.624 -07 000000610 INF: Z Motor: Moving to -0.132726 mm, started at -0.139487 mm, distance = 6.76 um
17-03-18 03:30:29.624 -07 000000610 INF: FPGA: Xmit ZDACW 28994\n [Z Motor]
17-03-18 03:30:29.624 -07 000000561 INF: FPGA: Recv ZDACW
17-03-18 03:30:29.634 -07 000000610 INF: FPGA: 'ZDACW 28994' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 03:30:29.634 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:30:29.634 -07 000000444 INF: FPGA: Recv ZDACR 28994
17-03-18 03:30:29.644 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:29.644 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 03:30:29.794 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:29.794 -07 000000579 INF: FPGA: Recv ZSGSRD 29958
17-03-18 03:30:29.804 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:30:29.804 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:29.804 -07 000000629 INF: FPGA: Recv ZSGSRD 29951
17-03-18 03:30:29.814 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:29.814 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:29.814 -07 000000579 INF: FPGA: Recv ZSGSRD 29947
17-03-18 03:30:29.824 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:29.824 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:29.824 -07 000000579 INF: FPGA: Recv ZSGSRD 29948
17-03-18 03:30:29.834 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:29.834 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:29.834 -07 000000561 INF: FPGA: Recv ZSGSRD 29952
17-03-18 03:30:29.844 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:29.844 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:29.844 -07 000000561 INF: FPGA: Recv ZSGSRD 29953
17-03-18 03:30:29.854 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:29.854 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:29.854 -07 000000579 INF: FPGA: Recv ZSGSRD 29952
17-03-18 03:30:29.864 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:29.874 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:29.874 -07 000000444 INF: FPGA: Recv ZSGSRD 29945
17-03-18 03:30:29.884 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 03:30:29.884 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:29.884 -07 000000606 INF: FPGA: Recv ZSGSRD 29949
17-03-18 03:30:29.894 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:29.894 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:29.894 -07 000000444 INF: FPGA: Recv ZSGSRD 29952
17-03-18 03:30:29.904 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:29.904 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:30:29.904 -07 000000606 INF: FPGA: Recv ZPIEZORD 25373
17-03-18 03:30:29.914 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:29.914 -07 000000610 INF: Z Motor: Piezo is near 34.2 V (nominally 0 to 100 V), expect near 44.2 V, since DAC is at 4.424 V. Piezo Error = -10.0 V.
17-03-18 03:30:29.914 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.7 um, Read 10 ADC samples: Avg = 29951 (-131.9 uncal um), Error = 0.8 uncal um, Median = 29952 (-132.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 29945 (-131.9 uncal um), Max = 29958 (-132.0 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 03:30:29.914 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29951, posNoise = 7, negNoise = 6
17-03-18 03:30:29.914 -07 000000610 INF: Z Motor: After move to -0.132726, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:30:29.914 -07 000000610 INF: Z Motor: MoveAbsStepped took 288 ms)
17-03-18 03:30:29.914 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:30:29.914 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:30:29.914 -07 000000444 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:30:29.914 -07 000000461 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 03:30:29.914 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 03:30:29.914 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:30:29.914 -07 000000606 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 03:30:29.914 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:30:29.914 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-18 03:30:29.914 -07 000000461 INF: Camera: sBCa_SetPowerMode(785074704, 1) start.
17-03-18 03:30:29.914 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 03:30:29.914 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 03:30:29.924 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 03:30:29.924 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 03:30:29.934 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 03:30:29.934 -07 000000606 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 03:30:29.934 -07 000000461 INF: Camera: sBCa_SetPowerMode(785074704, 1) end. Duration was 20 ms.
17-03-18 03:30:29.934 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 03:30:29.944 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 03:30:29.944 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 03:30:29.944 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 03:30:29.954 -07 000000461 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 34 ms.
17-03-18 03:30:29.954 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 406 406 195 195 29170 150\n [Camera]
17-03-18 03:30:30.154 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 03:30:30.554 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 598
17-03-18 03:30:30.554 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 598
17-03-18 03:30:30.554 -07 000000629 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:30:30.554 -07 000000629 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:30:30.554 -07 000000629 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 03:30:30.564 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 598
17-03-18 03:30:30.564 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 598
17-03-18 03:30:30.564 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:30:30.564 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:30:30.564 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 03:30:30.754 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29170 791
17-03-18 03:30:30.894 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP turning grn on 941
17-03-18 03:30:30.954 -07 000000629 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 395 ms.
17-03-18 03:30:30.954 -07 000000629 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 03:30:30.954 -07 000000629 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:30:30.954 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 394 ms.
17-03-18 03:30:30.954 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-18 03:30:30.954 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:30:30.954 -07 000000629 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 03:30:30.954 -07 000000629 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 03:30:31.074 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 113 ms.
17-03-18 03:30:31.074 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 515 ms.
17-03-18 03:30:31.094 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1136
17-03-18 03:30:31.094 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1136
17-03-18 03:30:31.104 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:30:31.104 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1136
17-03-18 03:30:31.104 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1136
17-03-18 03:30:31.104 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:30:31.104 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:30:31.104 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 591793880, 0x0, 391868352) start.
17-03-18 03:30:31.104 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:30:31.104 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 03:30:31.284 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP 1328
17-03-18 03:30:31.284 -07 000000629 INF: FPGA: Recv CAMDBLSNAP
17-03-18 03:30:31.284 -07 000000610 INF: FPGA: 'CAMDBLSNAP 406 406 195 195 29170 150' command took 2 ms to send, 1327 ms to get response, and 1336 ms overall
17-03-18 03:30:31.294 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 03:30:31.294 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 2 at Y-position 59.91064453125, Z-Position -0.132734929869017. ------
17-03-18 03:30:31.294 -07 000000444 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 03:30:31.294 -07 000000462 INF: Y Motor: MoveYZ optimized starting. Moving Y to 60.7426 mm, moving Z to -0.13920 mm
17-03-18 03:30:31.294 -07 000000462 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 03:30:31.294 -07 000000467 INF: Y Motor: Entering MoveAbsStepped (target = 97188 steps, sync = True, waitForSettling = True)
17-03-18 03:30:31.294 -07 000000467 INF: Y Motor: Moving to 60.7426 mm, started at 59.9106 mm, delta = 0.8320 mm
17-03-18 03:30:31.294 -07 000000606 INF: FPGA: Recv FOCMRRCUR 
17-03-18 03:30:31.304 -07 000000467 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:30:31.304 -07 000000444 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 03:30:31.304 -07 000000629 INF: Z Motor: Entering MoveAbsStepped (DAC = 30408, sync = True, waitForSettling = False)
17-03-18 03:30:31.304 -07 000000629 INF: Z Motor: Moving to -0.139199 mm, started at -0.132735 mm, distance = -6.46 um
17-03-18 03:30:31.304 -07 000000606 INF: FPGA: Recv YRDPOS 122697
17-03-18 03:30:31.314 -07 000000444 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 03:30:31.314 -07 000000467 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-18 03:30:31.314 -07 000000467 INF: Y Motor: Encoder = 122697 = motor step 95857.0 = 59.9106 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:30:31.314 -07 000000467 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 03:30:31.314 -07 000000467 INF: Y Motor: Moving 1331 steps2
17-03-18 03:30:31.324 -07 000000629 INF: FPGA: Xmit ZDACW 30408\n [Z Motor]
17-03-18 03:30:31.324 -07 000000501 INF: FPGA: Recv ZDACW
17-03-18 03:30:31.334 -07 000000467 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 03:30:31.334 -07 000000629 INF: FPGA: 'ZDACW 30408' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-18 03:30:31.344 -07 000000629 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:30:31.344 -07 000000501 INF: FPGA: Recv ZDACR 30408
17-03-18 03:30:31.354 -07 000000629 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 03:30:31.354 -07 000000629 INF: Z Motor: MoveAbsStepped took 49 ms (did NOT wait for settling yet))
17-03-18 03:30:31.504 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 390 ms.
17-03-18 03:30:31.504 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-18 03:30:31.504 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:30:31.504 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 591793880, 0x0, 391868352) end. Duration was 394 ms.
17-03-18 03:30:31.504 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-18 03:30:31.504 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:30:31.504 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:30:31.504 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:30:31.504 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-18 03:30:31.514 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 407 ms.
17-03-18 03:30:31.514 -07 000000629 INF: FPGA: Recv FOCMRRFOC
17-03-18 03:30:31.514 -07 000000444 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 211 ms overall
17-03-18 03:30:31.584 -07 000000629 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 03:30:31.584 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 112. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1642, R2=1712, Total=3354. Warn if over 250 bubbles per interval.
17-03-18 03:30:31.704 -07 000000444 INF: FPGA: Recv YMVTILE
17-03-18 03:30:31.704 -07 000000467 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 03:30:31.744 -07 000000467 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:30:31.744 -07 000000579 INF: FPGA: Recv YRDPOS 124381
17-03-18 03:30:31.754 -07 000000467 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 03:30:31.754 -07 000000467 INF: Y Motor: Encoder = 124381 = motor step 97172.7 = 60.7329 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:30:31.754 -07 000000467 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-18 03:30:31.754 -07 000000467 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.832 mm, average velocity = 2.096 mm/sec
17-03-18 03:30:32.704 -07 000000467 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:30:32.704 -07 000000512 INF: FPGA: Recv YRDPOS 124382
17-03-18 03:30:32.714 -07 000000467 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:32.714 -07 000000467 INF: Y Motor: Encoder = 124382 = motor step 97173.4 = 60.7334 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:30:32.734 -07 000000467 INF: Y Motor: After move to 60.742607, error = -0.009209, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 03:30:32.734 -07 000000467 INF: Y Motor: Position error after settling (table move) = -19 encoder counts (-0.009 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 03:30:32.734 -07 000000467 INF: Y Motor: Moved to 60.7334 after 1442 ms (table move)
17-03-18 03:30:32.744 -07 000000462 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139199 mm (DAC = 30408)
17-03-18 03:30:32.744 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:32.744 -07 000000467 INF: FPGA: Recv ZSGSRD 30965
17-03-18 03:30:32.754 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 03:30:32.754 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:32.754 -07 000000467 INF: FPGA: Recv ZSGSRD 30962
17-03-18 03:30:32.764 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:32.764 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:32.764 -07 000000512 INF: FPGA: Recv ZSGSRD 30960
17-03-18 03:30:32.774 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:32.774 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:32.774 -07 000000579 INF: FPGA: Recv ZSGSRD 30964
17-03-18 03:30:32.784 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:32.784 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:32.784 -07 000000467 INF: FPGA: Recv ZSGSRD 30961
17-03-18 03:30:32.794 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:32.794 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:32.794 -07 000000467 INF: FPGA: Recv ZSGSRD 30957
17-03-18 03:30:32.804 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:32.804 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:32.804 -07 000000467 INF: FPGA: Recv ZSGSRD 30960
17-03-18 03:30:32.814 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:32.814 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:32.814 -07 000000579 INF: FPGA: Recv ZSGSRD 30950
17-03-18 03:30:32.824 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:32.824 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:32.824 -07 000000512 INF: FPGA: Recv ZSGSRD 30957
17-03-18 03:30:32.834 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:32.834 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:32.834 -07 000000579 INF: FPGA: Recv ZSGSRD 30967
17-03-18 03:30:32.844 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:32.844 -07 000000462 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:30:32.844 -07 000000467 INF: FPGA: Recv ZPIEZORD 26702
17-03-18 03:30:32.854 -07 000000462 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:32.854 -07 000000462 INF: Z Motor: Piezo is near 37.0 V (nominally 0 to 100 V), expect near 46.4 V, since DAC is at 4.640 V. Piezo Error = -9.4 V.
17-03-18 03:30:32.854 -07 000000462 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.2 um, Read 10 ADC samples: Avg = 30960 (-138.4 uncal um), Error = 0.8 uncal um, Median = 30960 (-138.4 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 30950 (-138.4 uncal um), Max = 30967 (-138.5 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-18 03:30:32.854 -07 000000462 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30960, posNoise = 7, negNoise = 10
17-03-18 03:30:32.854 -07 000000462 INF: Z Motor: After move to -0.139199, error = -0.000018, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:30:32.854 -07 000000462 INF: Z Motor: Settle wait time = 1442 ms, measure time = 107 ms (allowed 150 ms), total time = 1549 ms
17-03-18 03:30:32.854 -07 000000462 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-18 03:30:32.904 -07 000000462 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1605 ms
17-03-18 03:30:32.904 -07 000000462 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 03:30:32.904 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:30:32.904 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:30:32.904 -07 000000467 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:30:32.904 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:30:32.904 -07 000000512 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 03:30:32.904 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:30:32.904 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 03:30:32.904 -07 000000512 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 03:30:32.914 -07 000000512 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 03:30:32.914 -07 000000512 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 03:30:32.924 -07 000000512 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 03:30:32.924 -07 000000512 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-18 03:30:32.924 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 03:30:32.974 -07 000000512 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 03:30:33.274 -07 000000467 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 03:30:33.274 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 03:30:33.274 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 03:30:33.274 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1475218192, 0x0, 559484976) start.
17-03-18 03:30:33.314 -07 000000512 INF: FPGA: Recv @CAMSNAP 380
17-03-18 03:30:33.314 -07 000000467 INF: FPGA: Recv CAMSNAP
17-03-18 03:30:33.314 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 381 ms to get response, and 384 ms overall
17-03-18 03:30:33.404 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1475218192, 0x0, 559484976) end. Duration was 126 ms.
17-03-18 03:30:33.404 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:30:33.404 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 03:30:33.404 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-18 03:30:33.414 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 03:30:33.414 -07 000000467 INF: Autofocus start
17-03-18 03:30:33.414 -07 000000467 INF: MeasureProfile start
17-03-18 03:30:33.414 -07 000000579 INF: FPGA: Recv FOCMRRCUR 
17-03-18 03:30:33.424 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 03:30:33.424 -07 000000512 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 03:30:33.424 -07 000000467 INF: MeasureProfile done
17-03-18 03:30:33.424 -07 000000467 INF: X=16  Z correction [um]=0.0530179
17-03-18 03:30:33.424 -07 000000467 INF: Autofocus finished
17-03-18 03:30:33.624 -07 000000462 INF: FPGA: Recv FOCMRRIMG
17-03-18 03:30:33.624 -07 000000512 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 03:30:33.624 -07 000000610 INF: ------------ Scan Snapping tile 2 at Y-position 60.7333984375, Z-position -0.139216959920054. ----------
17-03-18 03:30:33.624 -07 000000610 INF: Cycle	113	Tile	2	Exposure Settings		A	406	G	195	T	195	C	406
17-03-18 03:30:33.634 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28932, sync = True, waitForSettling = True)
17-03-18 03:30:33.634 -07 000000610 INF: Z Motor: Moving to -0.132442 mm, started at -0.139217 mm, distance = 6.77 um
17-03-18 03:30:33.634 -07 000000610 INF: FPGA: Xmit ZDACW 28932\n [Z Motor]
17-03-18 03:30:33.634 -07 000000512 INF: FPGA: Recv ZDACW
17-03-18 03:30:33.644 -07 000000610 INF: FPGA: 'ZDACW 28932' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 03:30:33.644 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:30:33.644 -07 000000462 INF: FPGA: Recv ZDACR 28932
17-03-18 03:30:33.654 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:33.654 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 03:30:33.804 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:33.804 -07 000000462 INF: FPGA: Recv ZSGSRD 29907
17-03-18 03:30:33.814 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:30:33.814 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:33.814 -07 000000579 INF: FPGA: Recv ZSGSRD 29907
17-03-18 03:30:33.824 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:33.824 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:33.824 -07 000000579 INF: FPGA: Recv ZSGSRD 29900
17-03-18 03:30:33.834 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:33.834 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:33.834 -07 000000512 INF: FPGA: Recv ZSGSRD 29912
17-03-18 03:30:33.844 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:33.844 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:33.844 -07 000000462 INF: FPGA: Recv ZSGSRD 29902
17-03-18 03:30:33.854 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:33.854 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:33.854 -07 000000462 INF: FPGA: Recv ZSGSRD 29902
17-03-18 03:30:33.864 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:33.864 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:33.864 -07 000000462 INF: FPGA: Recv ZSGSRD 29906
17-03-18 03:30:33.874 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:33.874 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:33.874 -07 000000462 INF: FPGA: Recv ZSGSRD 29906
17-03-18 03:30:33.884 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:33.884 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:33.884 -07 000000512 INF: FPGA: Recv ZSGSRD 29910
17-03-18 03:30:33.894 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:33.894 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:33.894 -07 000000462 INF: FPGA: Recv ZSGSRD 29903
17-03-18 03:30:33.904 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:33.904 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:30:33.904 -07 000000462 INF: FPGA: Recv ZPIEZORD 25346
17-03-18 03:30:33.914 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:33.914 -07 000000610 INF: Z Motor: Piezo is near 34.1 V (nominally 0 to 100 V), expect near 44.1 V, since DAC is at 4.415 V. Piezo Error = -10.0 V.
17-03-18 03:30:33.914 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.4 um, Read 10 ADC samples: Avg = 29906 (-131.7 uncal um), Error = 0.8 uncal um, Median = 29906 (-131.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29900 (-131.6 uncal um), Max = 29912 (-131.7 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 03:30:33.914 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29906, posNoise = 6, negNoise = 6
17-03-18 03:30:33.914 -07 000000610 INF: Z Motor: After move to -0.132442, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:30:33.914 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 03:30:33.914 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:30:33.914 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:30:33.914 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:30:33.914 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:30:33.914 -07 000000579 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 03:30:33.914 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:30:33.914 -07 000000467 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 03:30:33.914 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 03:30:33.914 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 03:30:33.914 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 03:30:33.914 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 03:30:33.914 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 03:30:33.924 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 03:30:33.924 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 03:30:33.924 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 03:30:33.924 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 03:30:33.934 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 03:30:33.934 -07 000000579 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 03:30:33.934 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-18 03:30:33.934 -07 000000467 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 03:30:33.944 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 406 406 195 195 29109 150\n [Camera]
17-03-18 03:30:34.144 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP turning red on 195
17-03-18 03:30:34.544 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 598
17-03-18 03:30:34.544 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 598
17-03-18 03:30:34.544 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:30:34.544 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:30:34.544 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 03:30:34.544 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 598
17-03-18 03:30:34.554 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 598
17-03-18 03:30:34.554 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:30:34.554 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:30:34.554 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start.
17-03-18 03:30:34.744 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29109 791
17-03-18 03:30:34.884 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning grn on 941
17-03-18 03:30:34.944 -07 000000579 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 113, FrontChillerTemperature: 3.981281,
17-03-18 03:30:34.944 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 400 ms.
17-03-18 03:30:34.944 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 03:30:34.944 -07 000000444 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:30:34.954 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 401 ms.
17-03-18 03:30:34.954 -07 000000444 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:30:34.954 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-18 03:30:34.954 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-18 03:30:34.954 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:30:34.954 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:30:34.964 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 415 ms.
17-03-18 03:30:35.084 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1136
17-03-18 03:30:35.084 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1136
17-03-18 03:30:35.084 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:30:35.084 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:30:35.084 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) start.
17-03-18 03:30:35.084 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1136
17-03-18 03:30:35.084 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1136
17-03-18 03:30:35.084 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:30:35.084 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:30:35.084 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 03:30:35.274 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP 1328
17-03-18 03:30:35.274 -07 000000430 INF: FPGA: Recv CAMDBLSNAP
17-03-18 03:30:35.274 -07 000000610 INF: FPGA: 'CAMDBLSNAP 406 406 195 195 29109 150' command took 2 ms to send, 1326 ms to get response, and 1335 ms overall
17-03-18 03:30:35.274 -07 000000610 INF: Skipping AutoFocus in Tile 3: adopting Best-Z from the cache: -0.133162
17-03-18 03:30:35.274 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 61.5726 mm, moving Z to -0.13316 mm
17-03-18 03:30:35.274 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 03:30:35.284 -07 000000629 INF: Y Motor: Entering MoveAbsStepped (target = 98516 steps, sync = True, waitForSettling = True)
17-03-18 03:30:35.284 -07 000000591 INF: Z Motor: Entering MoveAbsStepped (DAC = 29089, sync = True, waitForSettling = False)
17-03-18 03:30:35.284 -07 000000591 INF: Z Motor: Moving to -0.133161 mm, started at -0.132446 mm, distance = -0.72 um
17-03-18 03:30:35.284 -07 000000591 INF: FPGA: Xmit ZDACW 29089\n [Z Motor]
17-03-18 03:30:35.284 -07 000000629 INF: Y Motor: Moving to 61.5726 mm, started at 60.7334 mm, delta = 0.8392 mm
17-03-18 03:30:35.284 -07 000000430 INF: FPGA: Recv ZDACW
17-03-18 03:30:35.294 -07 000000629 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:30:35.294 -07 000000591 INF: FPGA: 'ZDACW 29089' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 03:30:35.294 -07 000000444 INF: FPGA: Recv YRDPOS 124382
17-03-18 03:30:35.304 -07 000000629 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-18 03:30:35.304 -07 000000629 INF: Y Motor: Encoder = 124382 = motor step 97173.4 = 60.7334 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:30:35.304 -07 000000629 INF: Y Motor: Last commanded position = 60.7426 mm (97188.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 03:30:35.304 -07 000000629 INF: Y Motor: Moving 1343 steps-20
17-03-18 03:30:35.304 -07 000000591 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:30:35.304 -07 000000455 INF: FPGA: Recv ZDACR 29089
17-03-18 03:30:35.314 -07 000000591 INF: FPGA: 'ZDACR' command took 1 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 03:30:35.314 -07 000000591 INF: Z Motor: MoveAbsStepped took 29 ms (did NOT wait for settling yet))
17-03-18 03:30:35.314 -07 000000629 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 03:30:35.484 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) end. Duration was 403 ms.
17-03-18 03:30:35.484 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 03:30:35.484 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:30:35.494 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 402 ms.
17-03-18 03:30:35.494 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-18 03:30:35.494 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:30:35.494 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:30:35.494 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 03:30:35.494 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-18 03:30:35.504 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-18 03:30:35.684 -07 000000626 INF: FPGA: Recv YMVTILE
17-03-18 03:30:35.684 -07 000000629 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-18 03:30:35.734 -07 000000629 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:30:35.734 -07 000000444 INF: FPGA: Recv YRDPOS 126083
17-03-18 03:30:35.744 -07 000000629 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 03:30:35.744 -07 000000629 INF: Y Motor: Encoder = 126083 = motor step 98502.3 = 61.5640 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:30:35.744 -07 000000629 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-18 03:30:35.744 -07 000000629 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.839 mm, average velocity = 2.163 mm/sec
17-03-18 03:30:36.584 -07 000000455 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 03:30:36.584 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 112. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1642, R2=1712, Total=3354. Warn if over 250 bubbles per interval.
17-03-18 03:30:36.694 -07 000000629 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:30:36.694 -07 000000424 INF: FPGA: Recv YRDPOS 126083
17-03-18 03:30:36.704 -07 000000629 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:30:36.704 -07 000000629 INF: Y Motor: Encoder = 126083 = motor step 98502.3 = 61.5640 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:30:36.724 -07 000000629 INF: Y Motor: After move to 61.572609, error = -0.008644, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 03:30:36.724 -07 000000629 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 03:30:36.724 -07 000000629 INF: Y Motor: Moved to 61.5640 after 1448 ms (table move)
17-03-18 03:30:36.734 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.133161 mm (DAC = 29089)
17-03-18 03:30:36.734 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:36.734 -07 000000455 INF: FPGA: Recv ZSGSRD 30018
17-03-18 03:30:36.744 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 03:30:36.744 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:36.744 -07 000000579 INF: FPGA: Recv ZSGSRD 30016
17-03-18 03:30:36.754 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:36.754 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:36.754 -07 000000444 INF: FPGA: Recv ZSGSRD 30027
17-03-18 03:30:36.764 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:36.764 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:36.764 -07 000000455 INF: FPGA: Recv ZSGSRD 30023
17-03-18 03:30:36.774 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:36.774 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:36.774 -07 000000629 INF: FPGA: Recv ZSGSRD 30021
17-03-18 03:30:36.784 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:36.784 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:36.784 -07 000000444 INF: FPGA: Recv ZSGSRD 30017
17-03-18 03:30:36.794 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:36.794 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:36.794 -07 000000455 INF: FPGA: Recv ZSGSRD 30009
17-03-18 03:30:36.804 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:36.804 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:36.804 -07 000000629 INF: FPGA: Recv ZSGSRD 30012
17-03-18 03:30:36.814 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:36.814 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:36.814 -07 000000579 INF: FPGA: Recv ZSGSRD 30011
17-03-18 03:30:36.824 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:36.824 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:36.824 -07 000000579 INF: FPGA: Recv ZSGSRD 30025
17-03-18 03:30:36.834 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:36.834 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:30:36.834 -07 000000579 INF: FPGA: Recv ZPIEZORD 25536
17-03-18 03:30:36.844 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:36.844 -07 000000610 INF: Z Motor: Piezo is near 34.6 V (nominally 0 to 100 V), expect near 44.4 V, since DAC is at 4.439 V. Piezo Error = -9.8 V.
17-03-18 03:30:36.844 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.2 um, Read 10 ADC samples: Avg = 30018 (-132.4 uncal um), Error = 0.8 uncal um, Median = 30018 (-132.4 uncal um), StdDev = 6 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 30009 (-132.3 uncal um), Max = 30027 (-132.4 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-18 03:30:36.844 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30018, posNoise = 9, negNoise = 9
17-03-18 03:30:36.844 -07 000000610 INF: Z Motor: After move to -0.133161, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:30:36.844 -07 000000610 INF: Z Motor: Settle wait time = 1451 ms, measure time = 108 ms (allowed 150 ms), total time = 1559 ms
17-03-18 03:30:36.844 -07 000000610 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-18 03:30:36.894 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1611 ms
17-03-18 03:30:36.894 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 03:30:36.894 -07 000000610 INF: ------------ Scan Snapping tile 3 at Y-position 61.56396484375, Z-position -0.133165352082515. ----------
17-03-18 03:30:36.894 -07 000000610 INF: Cycle	113	Tile	3	Exposure Settings		A	406	G	195	T	195	C	406
17-03-18 03:30:36.894 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28912, sync = True, waitForSettling = True)
17-03-18 03:30:36.894 -07 000000610 INF: Z Motor: Moving to -0.132351 mm, started at -0.133165 mm, distance = 0.81 um
17-03-18 03:30:36.894 -07 000000610 INF: FPGA: Xmit ZDACW 28912\n [Z Motor]
17-03-18 03:30:36.894 -07 000000579 INF: FPGA: Recv ZDACW
17-03-18 03:30:36.904 -07 000000610 INF: FPGA: 'ZDACW 28912' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 03:30:36.904 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:30:36.904 -07 000000455 INF: FPGA: Recv ZDACR 28912
17-03-18 03:30:36.914 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:36.914 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 03:30:37.064 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:37.064 -07 000000629 INF: FPGA: Recv ZSGSRD 29891
17-03-18 03:30:37.074 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:30:37.074 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:37.074 -07 000000444 INF: FPGA: Recv ZSGSRD 29904
17-03-18 03:30:37.084 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:37.084 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:37.084 -07 000000629 INF: FPGA: Recv ZSGSRD 29889
17-03-18 03:30:37.094 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:37.094 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:37.094 -07 000000579 INF: FPGA: Recv ZSGSRD 29891
17-03-18 03:30:37.104 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:37.104 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:37.104 -07 000000444 INF: FPGA: Recv ZSGSRD 29892
17-03-18 03:30:37.114 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:37.114 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:37.114 -07 000000455 INF: FPGA: Recv ZSGSRD 29886
17-03-18 03:30:37.124 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:37.124 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:37.124 -07 000000629 INF: FPGA: Recv ZSGSRD 29896
17-03-18 03:30:37.134 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:37.134 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:37.134 -07 000000455 INF: FPGA: Recv ZSGSRD 29889
17-03-18 03:30:37.144 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:37.144 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:37.144 -07 000000424 INF: FPGA: Recv ZSGSRD 29892
17-03-18 03:30:37.154 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:37.154 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:37.154 -07 000000579 INF: FPGA: Recv ZSGSRD 29898
17-03-18 03:30:37.164 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:37.164 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:30:37.164 -07 000000579 INF: FPGA: Recv ZPIEZORD 25376
17-03-18 03:30:37.174 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:37.174 -07 000000610 INF: Z Motor: Piezo is near 34.2 V (nominally 0 to 100 V), expect near 44.1 V, since DAC is at 4.412 V. Piezo Error = -9.9 V.
17-03-18 03:30:37.174 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.4 um, Read 10 ADC samples: Avg = 29893 (-131.6 uncal um), Error = 0.8 uncal um, Median = 29892 (-131.6 uncal um), StdDev = 5 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 29886 (-131.5 uncal um), Max = 29904 (-131.6 uncal um), Pos Noise = 11 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 03:30:37.174 -07 000000610 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29893, posNoise = 11, negNoise = 7
17-03-18 03:30:37.174 -07 000000610 INF: Z Motor: After move to -0.132351, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:30:37.174 -07 000000610 INF: Z Motor: MoveAbsStepped took 274 ms)
17-03-18 03:30:37.174 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:30:37.174 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:30:37.174 -07 000000629 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:30:37.174 -07 000000455 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:30:37.174 -07 000000444 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 03:30:37.174 -07 000000579 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 03:30:37.174 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 03:30:37.174 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:30:37.174 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 03:30:37.174 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 03:30:37.184 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 03:30:37.184 -07 000000444 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 03:30:37.184 -07 000000444 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 03:30:37.184 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-18 03:30:37.184 -07 000000444 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 03:30:37.184 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 03:30:37.194 -07 000000444 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 03:30:37.194 -07 000000444 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 03:30:37.194 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-18 03:30:37.194 -07 000000579 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 03:30:37.204 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 406 406 195 195 29089 150\n [Camera]
17-03-18 03:30:37.404 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 03:30:37.804 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 598
17-03-18 03:30:37.804 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 598
17-03-18 03:30:37.804 -07 000000629 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:30:37.804 -07 000000629 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:30:37.804 -07 000000629 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-18 03:30:37.814 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 598
17-03-18 03:30:37.814 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 598
17-03-18 03:30:37.814 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:30:37.814 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:30:37.814 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) start.
17-03-18 03:30:38.004 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29089 791
17-03-18 03:30:38.144 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP turning grn on 941
17-03-18 03:30:38.184 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) end. Duration was 375 ms.
17-03-18 03:30:38.184 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-18 03:30:38.184 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:30:38.184 -07 000000629 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 378 ms.
17-03-18 03:30:38.304 -07 000000629 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 494 ms.
17-03-18 03:30:38.304 -07 000000629 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:30:38.304 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 121 ms.
17-03-18 03:30:38.304 -07 000000629 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 03:30:38.314 -07 000000629 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 500 ms.
17-03-18 03:30:38.314 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 504 ms.
17-03-18 03:30:38.344 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1136
17-03-18 03:30:38.344 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1136
17-03-18 03:30:38.344 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:30:38.344 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1136
17-03-18 03:30:38.344 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1136
17-03-18 03:30:38.354 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:30:38.354 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:30:38.354 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 591793880, 0x0, 391868352) start.
17-03-18 03:30:38.364 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:30:38.364 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 03:30:38.534 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP 1329
17-03-18 03:30:38.534 -07 000000579 INF: FPGA: Recv CAMDBLSNAP
17-03-18 03:30:38.534 -07 000000610 INF: FPGA: 'CAMDBLSNAP 406 406 195 195 29089 150' command took 2 ms to send, 1327 ms to get response, and 1335 ms overall
17-03-18 03:30:38.534 -07 000000610 INF: Skipping AutoFocus in Tile 4: adopting Best-Z from the cache: -0.132755
17-03-18 03:30:38.544 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 62.4026 mm, moving Z to -0.13276 mm
17-03-18 03:30:38.544 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 03:30:38.544 -07 000000424 INF: Y Motor: Entering MoveAbsStepped (target = 99844 steps, sync = True, waitForSettling = True)
17-03-18 03:30:38.544 -07 000000424 INF: Y Motor: Moving to 62.4026 mm, started at 61.5640 mm, delta = 0.8386 mm
17-03-18 03:30:38.544 -07 000000629 INF: Z Motor: Entering MoveAbsStepped (DAC = 29000, sync = True, waitForSettling = False)
17-03-18 03:30:38.544 -07 000000629 INF: Z Motor: Moving to -0.132753 mm, started at -0.132362 mm, distance = -0.39 um
17-03-18 03:30:38.544 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:30:38.544 -07 000000579 INF: FPGA: Recv YRDPOS 126083
17-03-18 03:30:38.554 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 03:30:38.554 -07 000000424 INF: Y Motor: Encoder = 126083 = motor step 98502.3 = 61.5640 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:30:38.554 -07 000000424 INF: Y Motor: Last commanded position = 61.5726 mm (98516.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 03:30:38.554 -07 000000424 INF: Y Motor: Moving 1342 steps-18
17-03-18 03:30:38.554 -07 000000629 INF: FPGA: Xmit ZDACW 29000\n [Z Motor]
17-03-18 03:30:38.554 -07 000000579 INF: FPGA: Recv ZDACW
17-03-18 03:30:38.564 -07 000000424 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 03:30:38.564 -07 000000629 INF: FPGA: 'ZDACW 29000' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-18 03:30:38.574 -07 000000629 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:30:38.574 -07 000000501 INF: FPGA: Recv ZDACR 29000
17-03-18 03:30:38.584 -07 000000629 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 03:30:38.584 -07 000000629 INF: Z Motor: MoveAbsStepped took 36 ms (did NOT wait for settling yet))
17-03-18 03:30:38.744 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 591793880, 0x0, 391868352) end. Duration was 386 ms.
17-03-18 03:30:38.744 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-18 03:30:38.744 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:30:38.744 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:30:38.744 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 03:30:38.744 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 381 ms.
17-03-18 03:30:38.744 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-18 03:30:38.744 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:30:38.754 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 03:30:38.754 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 406 ms.
17-03-18 03:30:38.934 -07 000000561 INF: FPGA: Recv YMVTILE
17-03-18 03:30:38.934 -07 000000424 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-18 03:30:38.984 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:30:38.984 -07 000000455 INF: FPGA: Recv YRDPOS 127786
17-03-18 03:30:38.994 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 03:30:38.994 -07 000000424 INF: Y Motor: Encoder = 127786 = motor step 99832.8 = 62.3955 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:30:38.994 -07 000000424 INF: Y Motor: Position error before settling (table move) = -15 encoder counts (-0.007 mm)
17-03-18 03:30:38.994 -07 000000424 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 387 ms, distance = 0.839 mm, average velocity = 2.167 mm/sec
17-03-18 03:30:39.944 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:30:39.944 -07 000000444 INF: FPGA: Recv YRDPOS 127786
17-03-18 03:30:39.954 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:39.954 -07 000000424 INF: Y Motor: Encoder = 127786 = motor step 99832.8 = 62.3955 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:30:39.974 -07 000000424 INF: Y Motor: After move to 62.402607, error = -0.007099, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 03:30:39.974 -07 000000424 INF: Y Motor: Position error after settling (table move) = -15 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 03:30:39.974 -07 000000424 INF: Y Motor: Moved to 62.3955 after 1435 ms (table move)
17-03-18 03:30:39.984 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.132753 mm (DAC = 29000)
17-03-18 03:30:39.994 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:39.994 -07 000000467 INF: FPGA: Recv ZSGSRD 29957
17-03-18 03:30:40.004 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-18 03:30:40.004 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:40.004 -07 000000579 INF: FPGA: Recv ZSGSRD 29956
17-03-18 03:30:40.014 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:40.014 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:40.014 -07 000000579 INF: FPGA: Recv ZSGSRD 29958
17-03-18 03:30:40.024 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:40.024 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:40.024 -07 000000579 INF: FPGA: Recv ZSGSRD 29957
17-03-18 03:30:40.034 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:40.034 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:40.034 -07 000000579 INF: FPGA: Recv ZSGSRD 29950
17-03-18 03:30:40.044 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:40.044 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:40.044 -07 000000467 INF: FPGA: Recv ZSGSRD 29956
17-03-18 03:30:40.054 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:40.054 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:40.054 -07 000000467 INF: FPGA: Recv ZSGSRD 29957
17-03-18 03:30:40.064 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:40.064 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:40.064 -07 000000467 INF: FPGA: Recv ZSGSRD 29959
17-03-18 03:30:40.074 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:40.074 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:40.074 -07 000000467 INF: FPGA: Recv ZSGSRD 29961
17-03-18 03:30:40.084 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:40.084 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:40.084 -07 000000579 INF: FPGA: Recv ZSGSRD 29957
17-03-18 03:30:40.094 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:40.094 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:30:40.094 -07 000000606 INF: FPGA: Recv ZPIEZORD 25446
17-03-18 03:30:40.104 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:40.104 -07 000000610 INF: Z Motor: Piezo is near 34.4 V (nominally 0 to 100 V), expect near 44.3 V, since DAC is at 4.425 V. Piezo Error = -9.9 V.
17-03-18 03:30:40.104 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.8 um, Read 10 ADC samples: Avg = 29957 (-132.0 uncal um), Error = 0.8 uncal um, Median = 29957 (-132.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29950 (-131.9 uncal um), Max = 29961 (-132.0 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 03:30:40.104 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29957, posNoise = 4, negNoise = 7
17-03-18 03:30:40.104 -07 000000610 INF: Z Motor: After move to -0.132753, error = -0.000020, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:30:40.104 -07 000000610 INF: Z Motor: Settle wait time = 1438 ms, measure time = 119 ms (allowed 150 ms), total time = 1557 ms
17-03-18 03:30:40.104 -07 000000610 INF: Z Motor: Waiting extra 31 ms after reading position to reach expected total of 150 ms
17-03-18 03:30:40.144 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1599 ms
17-03-18 03:30:40.144 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 03:30:40.144 -07 000000610 INF: ------------ Scan Snapping tile 4 at Y-position 62.3955078125, Z-position -0.132773475141868. ----------
17-03-18 03:30:40.144 -07 000000610 INF: Cycle	113	Tile	4	Exposure Settings		A	406	G	195	T	195	C	406
17-03-18 03:30:40.144 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28824, sync = True, waitForSettling = True)
17-03-18 03:30:40.144 -07 000000610 INF: Z Motor: Moving to -0.131948 mm, started at -0.132773 mm, distance = 0.83 um
17-03-18 03:30:40.144 -07 000000610 INF: FPGA: Xmit ZDACW 28824\n [Z Motor]
17-03-18 03:30:40.144 -07 000000501 INF: FPGA: Recv ZDACW
17-03-18 03:30:40.154 -07 000000610 INF: FPGA: 'ZDACW 28824' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 03:30:40.154 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:30:40.154 -07 000000455 INF: FPGA: Recv ZDACR 28824
17-03-18 03:30:40.164 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:30:40.164 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 03:30:40.304 -07 000000501 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 113, FrontChillerTemperature: 4.008536,
17-03-18 03:30:40.314 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:40.314 -07 000000424 INF: FPGA: Recv ZSGSRD 29830
17-03-18 03:30:40.324 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:40.324 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:40.324 -07 000000444 INF: FPGA: Recv ZSGSRD 29840
17-03-18 03:30:40.334 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:40.344 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:40.344 -07 000000629 INF: FPGA: Recv ZSGSRD 29832
17-03-18 03:30:40.354 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 03:30:40.354 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:40.354 -07 000000461 INF: FPGA: Recv ZSGSRD 29830
17-03-18 03:30:40.364 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:40.374 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:40.374 -07 000000461 INF: FPGA: Recv ZSGSRD 29834
17-03-18 03:30:40.384 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 03:30:40.384 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:40.384 -07 000000629 INF: FPGA: Recv ZSGSRD 29829
17-03-18 03:30:40.394 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:40.404 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:40.404 -07 000000467 INF: FPGA: Recv ZSGSRD 29831
17-03-18 03:30:40.414 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 03:30:40.414 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:40.414 -07 000000467 INF: FPGA: Recv ZSGSRD 29828
17-03-18 03:30:40.424 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:40.424 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:40.424 -07 000000606 INF: FPGA: Recv ZSGSRD 29830
17-03-18 03:30:40.434 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:40.434 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:40.434 -07 000000606 INF: FPGA: Recv ZSGSRD 29828
17-03-18 03:30:40.444 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:40.444 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:30:40.444 -07 000000606 INF: FPGA: Recv ZPIEZORD 25290
17-03-18 03:30:40.454 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:40.454 -07 000000610 INF: Z Motor: Piezo is near 34.0 V (nominally 0 to 100 V), expect near 44.0 V, since DAC is at 4.398 V. Piezo Error = -10.0 V.
17-03-18 03:30:40.454 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.9 um, Read 10 ADC samples: Avg = 29831 (-131.2 uncal um), Error = 0.8 uncal um, Median = 29830 (-131.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29828 (-131.2 uncal um), Max = 29840 (-131.2 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 03:30:40.454 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29831, posNoise = 9, negNoise = 3
17-03-18 03:30:40.454 -07 000000610 INF: Z Motor: After move to -0.131948, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:30:40.454 -07 000000610 INF: Z Motor: MoveAbsStepped took 306 ms)
17-03-18 03:30:40.454 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:30:40.454 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:30:40.454 -07 000000629 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:30:40.454 -07 000000461 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 03:30:40.454 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:30:40.454 -07 000000467 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:30:40.454 -07 000000606 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 03:30:40.454 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 03:30:40.454 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 03:30:40.454 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 03:30:40.454 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 03:30:40.454 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 03:30:40.464 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 03:30:40.464 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 03:30:40.464 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-18 03:30:40.464 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 03:30:40.474 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 03:30:40.474 -07 000000606 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 03:30:40.474 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 03:30:40.474 -07 000000461 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 03:30:40.474 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 406 406 195 195 29000 150\n [Camera]
17-03-18 03:30:40.674 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 03:30:41.084 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 598
17-03-18 03:30:41.084 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 598
17-03-18 03:30:41.084 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:30:41.084 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 598
17-03-18 03:30:41.084 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 598
17-03-18 03:30:41.084 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:30:41.094 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:30:41.094 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 03:30:41.094 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:30:41.094 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 1458343128, 0x0, 418435064) start.
17-03-18 03:30:41.274 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29000 791
17-03-18 03:30:41.424 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP turning grn on 941
17-03-18 03:30:41.464 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 372 ms.
17-03-18 03:30:41.464 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 372 ms.
17-03-18 03:30:41.464 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:30:41.464 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 1458343128, 0x0, 418435064) end. Duration was 371 ms.
17-03-18 03:30:41.464 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 372 ms.
17-03-18 03:30:41.464 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:30:41.464 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 03:30:41.464 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-18 03:30:41.464 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 03:30:41.474 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-18 03:30:41.584 -07 000000461 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 03:30:41.584 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 112. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1642, R2=1712, Total=3354. Warn if over 250 bubbles per interval.
17-03-18 03:30:41.624 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1136
17-03-18 03:30:41.624 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1136
17-03-18 03:30:41.624 -07 000000629 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:30:41.624 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1136
17-03-18 03:30:41.624 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1136
17-03-18 03:30:41.624 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:30:41.624 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:30:41.624 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 03:30:41.634 -07 000000629 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:30:41.634 -07 000000629 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-18 03:30:41.814 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP 1329
17-03-18 03:30:41.814 -07 000000455 INF: FPGA: Recv CAMDBLSNAP
17-03-18 03:30:41.814 -07 000000610 INF: FPGA: 'CAMDBLSNAP 406 406 195 195 29000 150' command took 2 ms to send, 1324 ms to get response, and 1336 ms overall
17-03-18 03:30:41.814 -07 000000610 INF: Skipping AutoFocus in Tile 5: adopting Best-Z from the cache: -0.132598
17-03-18 03:30:41.814 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 63.2326 mm, moving Z to -0.13260 mm
17-03-18 03:30:41.814 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 03:30:41.814 -07 000000430 INF: Y Motor: Entering MoveAbsStepped (target = 101172 steps, sync = True, waitForSettling = True)
17-03-18 03:30:41.814 -07 000000430 INF: Y Motor: Moving to 63.2326 mm, started at 62.3955 mm, delta = 0.8371 mm
17-03-18 03:30:41.814 -07 000000430 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:30:41.824 -07 000000461 INF: Z Motor: Entering MoveAbsStepped (DAC = 28966, sync = True, waitForSettling = False)
17-03-18 03:30:41.824 -07 000000461 INF: Z Motor: Moving to -0.132598 mm, started at -0.131964 mm, distance = -0.63 um
17-03-18 03:30:41.824 -07 000000461 INF: FPGA: Xmit ZDACW 28966\n [Z Motor]
17-03-18 03:30:41.824 -07 000000618 INF: FPGA: Recv YRDPOS 127786
17-03-18 03:30:41.824 -07 000000430 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 2 ms overall
17-03-18 03:30:41.824 -07 000000430 INF: Y Motor: Encoder = 127786 = motor step 99832.8 = 62.3955 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:30:41.824 -07 000000430 INF: Y Motor: Last commanded position = 62.4026 mm (99844.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 03:30:41.824 -07 000000430 INF: Y Motor: Moving 1339 steps-15
17-03-18 03:30:41.824 -07 000000591 INF: FPGA: Recv ZDACW
17-03-18 03:30:41.834 -07 000000430 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 03:30:41.834 -07 000000461 INF: FPGA: 'ZDACW 28966' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:41.844 -07 000000461 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:30:41.844 -07 000000606 INF: FPGA: Recv ZDACR 28966
17-03-18 03:30:41.854 -07 000000461 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 03:30:41.854 -07 000000461 INF: Z Motor: MoveAbsStepped took 29 ms (did NOT wait for settling yet))
17-03-18 03:30:42.014 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 386 ms.
17-03-18 03:30:42.014 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-18 03:30:42.014 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:30:42.014 -07 000000629 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 382 ms.
17-03-18 03:30:42.014 -07 000000629 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-18 03:30:42.014 -07 000000629 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:30:42.014 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 03:30:42.014 -07 000000629 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 03:30:42.014 -07 000000629 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 03:30:42.024 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 03:30:42.204 -07 000000512 INF: FPGA: Recv YMVTILE
17-03-18 03:30:42.204 -07 000000430 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 385 ms overall
17-03-18 03:30:42.254 -07 000000430 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:30:42.254 -07 000000606 INF: FPGA: Recv YRDPOS 129483
17-03-18 03:30:42.264 -07 000000430 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 03:30:42.264 -07 000000430 INF: Y Motor: Encoder = 129483 = motor step 101158.6 = 63.2241 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:30:42.264 -07 000000430 INF: Y Motor: Position error before settling (table move) = -17 encoder counts (-0.008 mm)
17-03-18 03:30:42.264 -07 000000430 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 385 ms, distance = 0.837 mm, average velocity = 2.174 mm/sec
17-03-18 03:30:43.214 -07 000000430 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:30:43.214 -07 000000461 INF: FPGA: Recv YRDPOS 129483
17-03-18 03:30:43.224 -07 000000430 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:30:43.224 -07 000000430 INF: Y Motor: Encoder = 129483 = motor step 101158.6 = 63.2241 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:30:43.244 -07 000000430 INF: Y Motor: After move to 63.232609, error = -0.008488, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 03:30:43.244 -07 000000430 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 03:30:43.244 -07 000000430 INF: Y Motor: Moved to 63.2241 after 1429 ms (table move)
17-03-18 03:30:43.254 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.132598 mm (DAC = 28966)
17-03-18 03:30:43.254 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:43.254 -07 000000512 INF: FPGA: Recv ZSGSRD 29931
17-03-18 03:30:43.264 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 03:30:43.264 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:43.264 -07 000000461 INF: FPGA: Recv ZSGSRD 29933
17-03-18 03:30:43.274 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:43.274 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:43.274 -07 000000618 INF: FPGA: Recv ZSGSRD 29938
17-03-18 03:30:43.284 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:43.284 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:43.284 -07 000000455 INF: FPGA: Recv ZSGSRD 29932
17-03-18 03:30:43.294 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:43.294 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:43.294 -07 000000512 INF: FPGA: Recv ZSGSRD 29935
17-03-18 03:30:43.304 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:43.304 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:43.304 -07 000000467 INF: FPGA: Recv ZSGSRD 29930
17-03-18 03:30:43.314 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:43.314 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:43.314 -07 000000606 INF: FPGA: Recv ZSGSRD 29928
17-03-18 03:30:43.324 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:43.324 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:43.324 -07 000000629 INF: FPGA: Recv ZSGSRD 29927
17-03-18 03:30:43.334 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:43.334 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:43.334 -07 000000455 INF: FPGA: Recv ZSGSRD 29926
17-03-18 03:30:43.344 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:43.344 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:43.344 -07 000000629 INF: FPGA: Recv ZSGSRD 29924
17-03-18 03:30:43.354 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:43.354 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:30:43.354 -07 000000618 INF: FPGA: Recv ZPIEZORD 25468
17-03-18 03:30:43.364 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:43.364 -07 000000610 INF: Z Motor: Piezo is near 34.4 V (nominally 0 to 100 V), expect near 44.2 V, since DAC is at 4.420 V. Piezo Error = -9.8 V.
17-03-18 03:30:43.364 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.6 um, Read 10 ADC samples: Avg = 29930 (-131.8 uncal um), Error = 0.8 uncal um, Median = 29930 (-131.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 29924 (-131.8 uncal um), Max = 29938 (-131.9 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 03:30:43.364 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29930, posNoise = 8, negNoise = 6
17-03-18 03:30:43.364 -07 000000610 INF: Z Motor: After move to -0.132598, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:30:43.364 -07 000000610 INF: Z Motor: Settle wait time = 1431 ms, measure time = 109 ms (allowed 150 ms), total time = 1540 ms
17-03-18 03:30:43.364 -07 000000610 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-18 03:30:43.414 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1593 ms
17-03-18 03:30:43.414 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 03:30:43.414 -07 000000610 INF: ------------ Scan Snapping tile 5 at Y-position 63.22412109375, Z-position -0.13260002141404. ----------
17-03-18 03:30:43.414 -07 000000610 INF: Cycle	113	Tile	5	Exposure Settings		A	406	G	195	T	195	C	406
17-03-18 03:30:43.414 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28789, sync = True, waitForSettling = True)
17-03-18 03:30:43.414 -07 000000610 INF: Z Motor: Moving to -0.131788 mm, started at -0.132600 mm, distance = 0.81 um
17-03-18 03:30:43.414 -07 000000610 INF: FPGA: Xmit ZDACW 28789\n [Z Motor]
17-03-18 03:30:43.414 -07 000000467 INF: FPGA: Recv ZDACW
17-03-18 03:30:43.424 -07 000000610 INF: FPGA: 'ZDACW 28789' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 03:30:43.424 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:30:43.424 -07 000000455 INF: FPGA: Recv ZDACR 28789
17-03-18 03:30:43.434 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:43.434 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 03:30:43.584 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:43.584 -07 000000430 INF: FPGA: Recv ZSGSRD 29808
17-03-18 03:30:43.594 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:30:43.594 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:43.594 -07 000000629 INF: FPGA: Recv ZSGSRD 29806
17-03-18 03:30:43.604 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 03:30:43.604 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:43.604 -07 000000461 INF: FPGA: Recv ZSGSRD 29808
17-03-18 03:30:43.614 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:43.614 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:43.614 -07 000000455 INF: FPGA: Recv ZSGSRD 29808
17-03-18 03:30:43.624 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:43.624 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:43.624 -07 000000461 INF: FPGA: Recv ZSGSRD 29808
17-03-18 03:30:43.634 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:43.634 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:43.634 -07 000000629 INF: FPGA: Recv ZSGSRD 29802
17-03-18 03:30:43.644 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:43.644 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:43.644 -07 000000467 INF: FPGA: Recv ZSGSRD 29804
17-03-18 03:30:43.654 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:43.654 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:43.654 -07 000000467 INF: FPGA: Recv ZSGSRD 29809
17-03-18 03:30:43.664 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:43.664 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:43.664 -07 000000512 INF: FPGA: Recv ZSGSRD 29802
17-03-18 03:30:43.674 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:43.674 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:43.674 -07 000000629 INF: FPGA: Recv ZSGSRD 29806
17-03-18 03:30:43.684 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:43.684 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:30:43.684 -07 000000455 INF: FPGA: Recv ZPIEZORD 25299
17-03-18 03:30:43.694 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:43.694 -07 000000610 INF: Z Motor: Piezo is near 34.0 V (nominally 0 to 100 V), expect near 43.9 V, since DAC is at 4.393 V. Piezo Error = -9.9 V.
17-03-18 03:30:43.694 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.8 um, Read 10 ADC samples: Avg = 29806 (-131.0 uncal um), Error = 0.8 uncal um, Median = 29807 (-131.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 29802 (-131.0 uncal um), Max = 29809 (-131.0 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 03:30:43.694 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29806, posNoise = 3, negNoise = 4
17-03-18 03:30:43.694 -07 000000610 INF: Z Motor: After move to -0.131788, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:30:43.694 -07 000000610 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-18 03:30:43.694 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:30:43.694 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:30:43.694 -07 000000430 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:30:43.694 -07 000000591 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 03:30:43.694 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:30:43.694 -07 000000606 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 03:30:43.694 -07 000000467 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:30:43.694 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 03:30:43.694 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 03:30:43.694 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 03:30:43.694 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 03:30:43.694 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 03:30:43.694 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 03:30:43.704 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 03:30:43.704 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-18 03:30:43.704 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 03:30:43.714 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 03:30:43.714 -07 000000606 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 03:30:43.714 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 03:30:43.714 -07 000000591 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 03:30:43.724 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 406 406 195 195 28966 150\n [Camera]
17-03-18 03:30:43.914 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 03:30:44.324 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 598
17-03-18 03:30:44.334 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 598
17-03-18 03:30:44.334 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 598
17-03-18 03:30:44.334 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 598
17-03-18 03:30:44.334 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:30:44.334 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:30:44.344 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:30:44.344 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 591793880, 0x0, 391868352) start.
17-03-18 03:30:44.344 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:30:44.344 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 03:30:44.514 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28966 791
17-03-18 03:30:44.664 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning grn on 941
17-03-18 03:30:44.724 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 382 ms.
17-03-18 03:30:44.724 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-18 03:30:44.724 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:30:44.724 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 591793880, 0x0, 391868352) end. Duration was 383 ms.
17-03-18 03:30:44.724 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-18 03:30:44.724 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:30:44.724 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 03:30:44.724 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 03:30:44.724 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-18 03:30:44.734 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 03:30:44.864 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1136
17-03-18 03:30:44.864 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1136
17-03-18 03:30:44.864 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:30:44.864 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1136
17-03-18 03:30:44.864 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1136
17-03-18 03:30:44.864 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:30:44.874 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:30:44.874 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 03:30:44.874 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:30:44.874 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 1458343128, 0x0, 418435064) start.
17-03-18 03:30:45.054 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP 1329
17-03-18 03:30:45.054 -07 000000591 INF: FPGA: Recv CAMDBLSNAP
17-03-18 03:30:45.054 -07 000000610 INF: FPGA: 'CAMDBLSNAP 406 406 195 195 28966 150' command took 2 ms to send, 1327 ms to get response, and 1337 ms overall
17-03-18 03:30:45.054 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 03:30:45.054 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 6 at Y-position 63.22412109375, Z-Position -0.131803419108462. ------
17-03-18 03:30:45.064 -07 000000591 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 03:30:45.064 -07 000000512 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.0626 mm, moving Z to -0.13822 mm
17-03-18 03:30:45.064 -07 000000512 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 03:30:45.064 -07 000000430 INF: Y Motor: Entering MoveAbsStepped (target = 102500 steps, sync = True, waitForSettling = True)
17-03-18 03:30:45.064 -07 000000430 INF: Y Motor: Moving to 64.0626 mm, started at 63.2241 mm, delta = 0.8385 mm
17-03-18 03:30:45.074 -07 000000430 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:30:45.244 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 377 ms.
17-03-18 03:30:45.244 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-18 03:30:45.244 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:30:45.244 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 1458343128, 0x0, 418435064) end. Duration was 374 ms.
17-03-18 03:30:45.244 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-18 03:30:45.244 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:30:45.254 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 03:30:45.254 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-18 03:30:45.254 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 03:30:45.264 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-18 03:30:45.264 -07 000000501 INF: Z Motor: Entering MoveAbsStepped (DAC = 30193, sync = True, waitForSettling = False)
17-03-18 03:30:45.264 -07 000000501 INF: Z Motor: Moving to -0.138215 mm, started at -0.131803 mm, distance = -6.41 um
17-03-18 03:30:45.264 -07 000000501 INF: FPGA: Xmit ZDACW 30193\n [Z Motor]
17-03-18 03:30:45.274 -07 000000467 INF: FPGA: Recv FOCMRRCUR 
17-03-18 03:30:45.274 -07 000000467 INF: FPGA: Recv YRDPOS 129483
17-03-18 03:30:45.274 -07 000000591 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 201 ms to get response, and 208 ms overall
17-03-18 03:30:45.274 -07 000000467 INF: FPGA: Recv ZDACW
17-03-18 03:30:45.274 -07 000000501 INF: FPGA: 'ZDACW 30193' command took 0 ms to send, 2 ms to get response, and 5 ms overall
17-03-18 03:30:45.274 -07 000000501 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:30:45.274 -07 000000430 INF: FPGA: 'YRDPOS' command took 0 ms to send, 191 ms to get response, and 204 ms overall
17-03-18 03:30:45.274 -07 000000430 INF: Y Motor: Encoder = 129483 = motor step 101158.6 = 63.2241 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:30:45.274 -07 000000430 INF: Y Motor: Last commanded position = 63.2326 mm (101172.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 03:30:45.274 -07 000000430 INF: Y Motor: Moving 1342 steps-17
17-03-18 03:30:45.274 -07 000000467 INF: FPGA: Recv ZDACR 30193
17-03-18 03:30:45.284 -07 000000501 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 03:30:45.284 -07 000000501 INF: Z Motor: MoveAbsStepped took 14 ms (did NOT wait for settling yet))
17-03-18 03:30:45.284 -07 000000430 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 03:30:45.294 -07 000000591 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 03:30:45.494 -07 000000501 INF: FPGA: Recv FOCMRRFOC
17-03-18 03:30:45.494 -07 000000591 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 220 ms overall
17-03-18 03:30:45.654 -07 000000591 INF: FPGA: Recv YMVTILE
17-03-18 03:30:45.654 -07 000000430 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 385 ms overall
17-03-18 03:30:45.704 -07 000000430 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:30:45.714 -07 000000591 INF: FPGA: Recv YRDPOS 131189
17-03-18 03:30:45.714 -07 000000430 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 03:30:45.714 -07 000000430 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:30:45.714 -07 000000430 INF: Y Motor: Position error before settling (table move) = -11 encoder counts (-0.005 mm)
17-03-18 03:30:45.714 -07 000000430 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 385 ms, distance = 0.838 mm, average velocity = 2.178 mm/sec
17-03-18 03:30:45.724 -07 000000591 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 113, FrontChillerTemperature: 4.012614,
17-03-18 03:30:46.584 -07 000000444 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 03:30:46.584 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 112. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1642, R2=1712, Total=3354. Warn if over 250 bubbles per interval.
17-03-18 03:30:46.664 -07 000000430 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:30:46.664 -07 000000591 INF: FPGA: Recv YRDPOS 131189
17-03-18 03:30:46.674 -07 000000430 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:30:46.674 -07 000000430 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:30:46.694 -07 000000430 INF: Y Motor: After move to 64.062607, error = -0.005478, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 03:30:46.694 -07 000000430 INF: Y Motor: Position error after settling (table move) = -11 encoder counts (-0.005 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 03:30:46.694 -07 000000430 INF: Y Motor: Moved to 64.0571 after 1629 ms (table move)
17-03-18 03:30:46.694 -07 000000512 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138215 mm (DAC = 30193)
17-03-18 03:30:46.694 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:46.704 -07 000000579 INF: FPGA: Recv ZSGSRD 30804
17-03-18 03:30:46.704 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 2 ms overall
17-03-18 03:30:46.704 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:46.704 -07 000000424 INF: FPGA: Recv ZSGSRD 30799
17-03-18 03:30:46.714 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 03:30:46.714 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:46.714 -07 000000591 INF: FPGA: Recv ZSGSRD 30805
17-03-18 03:30:46.724 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:46.724 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:46.724 -07 000000424 INF: FPGA: Recv ZSGSRD 30805
17-03-18 03:30:46.734 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:46.734 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:46.734 -07 000000444 INF: FPGA: Recv ZSGSRD 30811
17-03-18 03:30:46.744 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:46.744 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:46.744 -07 000000591 INF: FPGA: Recv ZSGSRD 30797
17-03-18 03:30:46.754 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:46.754 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:46.754 -07 000000444 INF: FPGA: Recv ZSGSRD 30799
17-03-18 03:30:46.764 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:46.764 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:46.764 -07 000000424 INF: FPGA: Recv ZSGSRD 30808
17-03-18 03:30:46.774 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:46.774 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:46.774 -07 000000444 INF: FPGA: Recv ZSGSRD 30807
17-03-18 03:30:46.784 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:46.784 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:46.784 -07 000000561 INF: FPGA: Recv ZSGSRD 30807
17-03-18 03:30:46.794 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:46.794 -07 000000512 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:30:46.794 -07 000000444 INF: FPGA: Recv ZPIEZORD 26624
17-03-18 03:30:46.804 -07 000000512 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:46.804 -07 000000512 INF: Z Motor: Piezo is near 36.9 V (nominally 0 to 100 V), expect near 46.1 V, since DAC is at 4.607 V. Piezo Error = -9.2 V.
17-03-18 03:30:46.804 -07 000000512 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.2 um, Read 10 ADC samples: Avg = 30804 (-137.4 uncal um), Error = 0.8 uncal um, Median = 30805 (-137.4 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 30797 (-137.4 uncal um), Max = 30811 (-137.5 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 03:30:46.804 -07 000000512 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30804, posNoise = 7, negNoise = 7
17-03-18 03:30:46.804 -07 000000512 INF: Z Motor: After move to -0.138215, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:30:46.804 -07 000000512 INF: Z Motor: Settle wait time = 1433 ms, measure time = 101 ms (allowed 150 ms), total time = 1534 ms
17-03-18 03:30:46.804 -07 000000512 INF: Z Motor: Waiting extra 49 ms after reading position to reach expected total of 150 ms
17-03-18 03:30:46.854 -07 000000512 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1786 ms
17-03-18 03:30:46.854 -07 000000512 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 03:30:46.854 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:30:46.854 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:30:46.854 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:30:46.854 -07 000000444 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:30:46.854 -07 000000561 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 03:30:46.854 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:30:46.854 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 03:30:46.854 -07 000000561 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 03:30:46.864 -07 000000561 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 03:30:46.864 -07 000000561 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 03:30:46.874 -07 000000561 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 9 ms.
17-03-18 03:30:46.874 -07 000000561 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 13 ms.
17-03-18 03:30:46.874 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 03:30:46.914 -07 000000430 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 03:30:47.214 -07 000000444 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 03:30:47.214 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 03:30:47.214 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 03:30:47.224 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1424593000, 0x0, 559484976) start.
17-03-18 03:30:47.254 -07 000000512 INF: FPGA: Recv @CAMSNAP 380
17-03-18 03:30:47.254 -07 000000561 INF: FPGA: Recv CAMSNAP
17-03-18 03:30:47.254 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 384 ms overall
17-03-18 03:30:47.344 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1424593000, 0x0, 559484976) end. Duration was 127 ms.
17-03-18 03:30:47.344 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:30:47.344 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 03:30:47.344 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-18 03:30:47.454 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 03:30:47.454 -07 000000512 INF: Autofocus start
17-03-18 03:30:47.454 -07 000000512 INF: MeasureProfile start
17-03-18 03:30:47.454 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-18 03:30:47.464 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 03:30:47.464 -07 000000424 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 03:30:47.464 -07 000000512 INF: MeasureProfile done
17-03-18 03:30:47.464 -07 000000512 INF: X=16  Z correction [um]=0.0530179
17-03-18 03:30:47.464 -07 000000512 INF: Autofocus finished
17-03-18 03:30:47.664 -07 000000501 INF: FPGA: Recv FOCMRRIMG
17-03-18 03:30:47.664 -07 000000424 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 192 ms to get response, and 202 ms overall
17-03-18 03:30:47.664 -07 000000610 INF: ------------ Scan Snapping tile 6 at Y-position 64.05712890625, Z-position -0.13821478282594. ----------
17-03-18 03:30:47.664 -07 000000610 INF: Cycle	113	Tile	6	Exposure Settings		A	406	G	195	T	195	C	406
17-03-18 03:30:47.674 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28717, sync = True, waitForSettling = True)
17-03-18 03:30:47.674 -07 000000610 INF: Z Motor: Moving to -0.131458 mm, started at -0.138215 mm, distance = 6.76 um
17-03-18 03:30:47.674 -07 000000610 INF: FPGA: Xmit ZDACW 28717\n [Z Motor]
17-03-18 03:30:47.674 -07 000000561 INF: FPGA: Recv ZDACW
17-03-18 03:30:47.684 -07 000000610 INF: FPGA: 'ZDACW 28717' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:47.684 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:30:47.684 -07 000000444 INF: FPGA: Recv ZDACR 28717
17-03-18 03:30:47.694 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:47.694 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 03:30:47.844 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:47.844 -07 000000424 INF: FPGA: Recv ZSGSRD 29751
17-03-18 03:30:47.854 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:30:47.854 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:47.854 -07 000000512 INF: FPGA: Recv ZSGSRD 29749
17-03-18 03:30:47.864 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:47.864 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:47.864 -07 000000561 INF: FPGA: Recv ZSGSRD 29754
17-03-18 03:30:47.874 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:47.874 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:47.874 -07 000000430 INF: FPGA: Recv ZSGSRD 29756
17-03-18 03:30:47.884 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:47.884 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:47.884 -07 000000512 INF: FPGA: Recv ZSGSRD 29755
17-03-18 03:30:47.894 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:47.894 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:47.894 -07 000000424 INF: FPGA: Recv ZSGSRD 29757
17-03-18 03:30:47.904 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:47.904 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:47.904 -07 000000591 INF: FPGA: Recv ZSGSRD 29756
17-03-18 03:30:47.914 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:47.914 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:47.914 -07 000000501 INF: FPGA: Recv ZSGSRD 29753
17-03-18 03:30:47.924 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:47.924 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:47.924 -07 000000444 INF: FPGA: Recv ZSGSRD 29752
17-03-18 03:30:47.934 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:47.934 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:47.934 -07 000000512 INF: FPGA: Recv ZSGSRD 29758
17-03-18 03:30:47.944 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 03:30:47.944 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:30:47.944 -07 000000561 INF: FPGA: Recv ZPIEZORD 25215
17-03-18 03:30:47.954 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:47.954 -07 000000610 INF: Z Motor: Piezo is near 33.9 V (nominally 0 to 100 V), expect near 43.8 V, since DAC is at 4.382 V. Piezo Error = -10.0 V.
17-03-18 03:30:47.954 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.5 um, Read 10 ADC samples: Avg = 29754 (-130.7 uncal um), Error = 0.8 uncal um, Median = 29754 (-130.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29749 (-130.7 uncal um), Max = 29758 (-130.7 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 03:30:47.954 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29754, posNoise = 4, negNoise = 5
17-03-18 03:30:47.954 -07 000000610 INF: Z Motor: After move to -0.131458, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:30:47.954 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 03:30:47.954 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:30:47.954 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:30:47.954 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:30:47.954 -07 000000430 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:30:47.954 -07 000000591 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 03:30:47.954 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:30:47.954 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 03:30:47.954 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 03:30:47.954 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 03:30:47.954 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 03:30:47.954 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 03:30:47.954 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 03:30:47.954 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 03:30:47.954 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 03:30:47.964 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-18 03:30:47.964 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 03:30:47.964 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 03:30:47.964 -07 000000591 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 03:30:47.974 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 03:30:47.974 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 03:30:47.974 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 406 406 195 195 28894 150\n [Camera]
17-03-18 03:30:48.174 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 03:30:48.574 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 598
17-03-18 03:30:48.574 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 598
17-03-18 03:30:48.584 -07 000000430 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:30:48.584 -07 000000430 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:30:48.584 -07 000000430 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-18 03:30:48.584 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 598
17-03-18 03:30:48.584 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 598
17-03-18 03:30:48.584 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:30:48.584 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:30:48.584 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) start.
17-03-18 03:30:48.774 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28894 791
17-03-18 03:30:48.924 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning grn on 941
17-03-18 03:30:48.954 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) end. Duration was 372 ms.
17-03-18 03:30:48.954 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 372 ms.
17-03-18 03:30:48.954 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:30:48.954 -07 000000430 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 377 ms.
17-03-18 03:30:48.954 -07 000000430 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-18 03:30:48.954 -07 000000430 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:30:48.964 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:30:48.964 -07 000000430 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 03:30:48.964 -07 000000430 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-18 03:30:48.964 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-18 03:30:49.114 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1136
17-03-18 03:30:49.114 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1136
17-03-18 03:30:49.114 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:30:49.114 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:30:49.114 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) start.
17-03-18 03:30:49.124 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1136
17-03-18 03:30:49.124 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1136
17-03-18 03:30:49.124 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:30:49.244 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:30:49.244 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) start.
17-03-18 03:30:49.304 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP 1329
17-03-18 03:30:49.304 -07 000000424 INF: FPGA: Recv CAMDBLSNAP
17-03-18 03:30:49.304 -07 000000610 INF: FPGA: 'CAMDBLSNAP 406 406 195 195 28894 150' command took 4 ms to send, 1329 ms to get response, and 1337 ms overall
17-03-18 03:30:49.314 -07 000000610 INF: Skipping AutoFocus in Tile 7: adopting Best-Z from the cache: -0.132072
17-03-18 03:30:49.314 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.8926 mm, moving Z to -0.13207 mm
17-03-18 03:30:49.314 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 03:30:49.314 -07 000000424 INF: Y Motor: Entering MoveAbsStepped (target = 103828 steps, sync = True, waitForSettling = True)
17-03-18 03:30:49.314 -07 000000424 INF: Y Motor: Moving to 64.8926 mm, started at 64.0571 mm, delta = 0.8355 mm
17-03-18 03:30:49.314 -07 000000430 INF: Z Motor: Entering MoveAbsStepped (DAC = 28851, sync = True, waitForSettling = False)
17-03-18 03:30:49.314 -07 000000430 INF: Z Motor: Moving to -0.132071 mm, started at -0.131469 mm, distance = -0.60 um
17-03-18 03:30:49.314 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:30:49.324 -07 000000430 INF: FPGA: Xmit ZDACW 28851\n [Z Motor]
17-03-18 03:30:49.504 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) end. Duration was 384 ms.
17-03-18 03:30:49.504 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-18 03:30:49.504 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:30:49.504 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 03:30:49.504 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-18 03:30:49.514 -07 000000579 INF: FPGA: Recv YRDPOS 131189
17-03-18 03:30:49.514 -07 000000579 INF: FPGA: Recv ZDACW
17-03-18 03:30:49.514 -07 000000430 INF: FPGA: 'ZDACW 28851' command took 0 ms to send, 188 ms to get response, and 204 ms overall
17-03-18 03:30:49.514 -07 000000430 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:30:49.514 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 198 ms to get response, and 205 ms overall
17-03-18 03:30:49.514 -07 000000424 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:30:49.514 -07 000000424 INF: Y Motor: Last commanded position = 64.0626 mm (102500.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 03:30:49.524 -07 000000424 INF: Y Motor: Moving 1337 steps-11
17-03-18 03:30:49.524 -07 000000424 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 03:30:49.524 -07 000000579 INF: FPGA: Recv ZDACR 28851
17-03-18 03:30:49.524 -07 000000430 INF: FPGA: 'ZDACR' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-18 03:30:49.524 -07 000000430 INF: Z Motor: MoveAbsStepped took 208 ms (did NOT wait for settling yet))
17-03-18 03:30:49.614 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) end. Duration was 372 ms.
17-03-18 03:30:49.614 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 373 ms.
17-03-18 03:30:49.614 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:30:49.624 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:30:49.624 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 508 ms.
17-03-18 03:30:49.904 -07 000000579 INF: FPGA: Recv YMVTILE
17-03-18 03:30:49.904 -07 000000424 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 371 ms to get response, and 381 ms overall
17-03-18 03:30:49.944 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:30:49.954 -07 000000430 INF: FPGA: Recv YRDPOS 132872
17-03-18 03:30:49.954 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 03:30:49.954 -07 000000424 INF: Y Motor: Encoder = 132872 = motor step 103806.3 = 64.8789 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:30:49.954 -07 000000424 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-18 03:30:49.954 -07 000000424 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 382 ms, distance = 0.835 mm, average velocity = 2.187 mm/sec
17-03-18 03:30:50.904 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:30:50.904 -07 000000579 INF: FPGA: Recv YRDPOS 132872
17-03-18 03:30:50.914 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:30:50.914 -07 000000424 INF: Y Motor: Encoder = 132872 = motor step 103806.3 = 64.8789 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:30:50.944 -07 000000424 INF: Y Motor: After move to 64.892609, error = -0.013702, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 03:30:50.944 -07 000000424 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 03:30:50.944 -07 000000424 INF: Y Motor: Moved to 64.8789 after 1628 ms (table move)
17-03-18 03:30:50.944 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.132071 mm (DAC = 28851)
17-03-18 03:30:50.944 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:50.944 -07 000000512 INF: FPGA: Recv ZSGSRD 29849
17-03-18 03:30:50.954 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 03:30:50.954 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:50.954 -07 000000430 INF: FPGA: Recv ZSGSRD 29847
17-03-18 03:30:50.964 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:50.964 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:50.964 -07 000000512 INF: FPGA: Recv ZSGSRD 29851
17-03-18 03:30:50.974 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:50.974 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:50.974 -07 000000424 INF: FPGA: Recv ZSGSRD 29849
17-03-18 03:30:50.984 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:50.984 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:50.984 -07 000000424 INF: FPGA: Recv ZSGSRD 29850
17-03-18 03:30:50.994 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:50.994 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:50.994 -07 000000512 INF: FPGA: Recv ZSGSRD 29852
17-03-18 03:30:51.004 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:51.004 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:51.004 -07 000000424 INF: FPGA: Recv ZSGSRD 29853
17-03-18 03:30:51.014 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:51.014 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:51.014 -07 000000462 INF: FPGA: Recv ZSGSRD 29845
17-03-18 03:30:51.024 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:51.024 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:51.024 -07 000000455 INF: FPGA: Recv ZSGSRD 29844
17-03-18 03:30:51.034 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:51.034 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:51.034 -07 000000512 INF: FPGA: Recv ZSGSRD 29850
17-03-18 03:30:51.044 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:51.044 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:30:51.044 -07 000000430 INF: FPGA: Recv ZPIEZORD 25413
17-03-18 03:30:51.054 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:51.054 -07 000000610 INF: Z Motor: Piezo is near 34.3 V (nominally 0 to 100 V), expect near 44.0 V, since DAC is at 4.402 V. Piezo Error = -9.7 V.
17-03-18 03:30:51.054 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.1 um, Read 10 ADC samples: Avg = 29849 (-131.3 uncal um), Error = 0.8 uncal um, Median = 29850 (-131.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29844 (-131.3 uncal um), Max = 29853 (-131.3 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 03:30:51.054 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29849, posNoise = 4, negNoise = 5
17-03-18 03:30:51.054 -07 000000610 INF: Z Motor: After move to -0.132071, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:30:51.054 -07 000000610 INF: Z Motor: Settle wait time = 1630 ms, measure time = 107 ms (allowed 150 ms), total time = 1737 ms
17-03-18 03:30:51.054 -07 000000610 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-18 03:30:51.084 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 113, FrontChillerTemperature: 4.000345,
17-03-18 03:30:51.104 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1788 ms
17-03-18 03:30:51.104 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 03:30:51.104 -07 000000610 INF: ------------ Scan Snapping tile 7 at Y-position 64.87890625, Z-position -0.132079660230558. ----------
17-03-18 03:30:51.104 -07 000000610 INF: Cycle	113	Tile	7	Exposure Settings		A	406	G	195	T	195	C	406
17-03-18 03:30:51.104 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28674, sync = True, waitForSettling = True)
17-03-18 03:30:51.104 -07 000000610 INF: Z Motor: Moving to -0.131261 mm, started at -0.132080 mm, distance = 0.82 um
17-03-18 03:30:51.124 -07 000000610 INF: FPGA: Xmit ZDACW 28674\n [Z Motor]
17-03-18 03:30:51.124 -07 000000424 INF: FPGA: Recv ZDACW
17-03-18 03:30:51.134 -07 000000610 INF: FPGA: 'ZDACW 28674' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-18 03:30:51.134 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:30:51.134 -07 000000579 INF: FPGA: Recv ZDACR 28674
17-03-18 03:30:51.144 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:51.144 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 03:30:51.294 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:51.294 -07 000000424 INF: FPGA: Recv ZSGSRD 29730
17-03-18 03:30:51.304 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:30:51.314 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:51.314 -07 000000512 INF: FPGA: Recv ZSGSRD 29719
17-03-18 03:30:51.324 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 03:30:51.324 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:51.324 -07 000000430 INF: FPGA: Recv ZSGSRD 29720
17-03-18 03:30:51.334 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:51.334 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:51.334 -07 000000579 INF: FPGA: Recv ZSGSRD 29720
17-03-18 03:30:51.344 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:51.344 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:51.344 -07 000000430 INF: FPGA: Recv ZSGSRD 29718
17-03-18 03:30:51.354 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:51.354 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:51.354 -07 000000424 INF: FPGA: Recv ZSGSRD 29723
17-03-18 03:30:51.364 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:51.364 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:51.364 -07 000000455 INF: FPGA: Recv ZSGSRD 29719
17-03-18 03:30:51.374 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:51.374 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:51.374 -07 000000424 INF: FPGA: Recv ZSGSRD 29729
17-03-18 03:30:51.384 -07 000000610 INF: FPGA: 'ZSGSRD' command took 2 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:51.384 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:51.384 -07 000000579 INF: FPGA: Recv ZSGSRD 29723
17-03-18 03:30:51.394 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:51.394 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:51.394 -07 000000424 INF: FPGA: Recv ZSGSRD 29721
17-03-18 03:30:51.404 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:51.404 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:30:51.404 -07 000000455 INF: FPGA: Recv ZPIEZORD 25223
17-03-18 03:30:51.414 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:51.414 -07 000000610 INF: Z Motor: Piezo is near 33.9 V (nominally 0 to 100 V), expect near 43.8 V, since DAC is at 4.375 V. Piezo Error = -9.9 V.
17-03-18 03:30:51.414 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.3 um, Read 10 ADC samples: Avg = 29722 (-130.5 uncal um), Error = 0.8 uncal um, Median = 29720 (-130.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29718 (-130.5 uncal um), Max = 29730 (-130.5 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 03:30:51.414 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29722, posNoise = 8, negNoise = 4
17-03-18 03:30:51.414 -07 000000610 INF: Z Motor: After move to -0.131261, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:30:51.414 -07 000000610 INF: Z Motor: MoveAbsStepped took 306 ms)
17-03-18 03:30:51.414 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:30:51.414 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:30:51.414 -07 000000430 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:30:51.414 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:30:51.414 -07 000000455 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 03:30:51.414 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:30:51.414 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 03:30:51.414 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 03:30:51.414 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 03:30:51.414 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 03:30:51.414 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 03:30:51.414 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 03:30:51.424 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 03:30:51.424 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 03:30:51.424 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 03:30:51.424 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 03:30:51.434 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 03:30:51.434 -07 000000455 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 03:30:51.434 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 03:30:51.434 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 03:30:51.434 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 406 406 195 195 28851 150\n [Camera]
17-03-18 03:30:51.584 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 03:30:51.584 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 112. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1642, R2=1712, Total=3354. Warn if over 250 bubbles per interval.
17-03-18 03:30:51.634 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 03:30:52.044 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 598
17-03-18 03:30:52.044 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 598
17-03-18 03:30:52.044 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:30:52.044 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 598
17-03-18 03:30:52.044 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 598
17-03-18 03:30:52.044 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:30:52.054 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:30:52.054 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 03:30:52.054 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:30:52.054 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 1458343128, 0x0, 418435064) start.
17-03-18 03:30:52.234 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28851 791
17-03-18 03:30:52.384 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning grn on 941
17-03-18 03:30:52.424 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 377 ms.
17-03-18 03:30:52.424 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-18 03:30:52.424 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:30:52.434 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:30:52.434 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-18 03:30:52.434 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 1458343128, 0x0, 418435064) end. Duration was 377 ms.
17-03-18 03:30:52.434 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-18 03:30:52.434 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:30:52.434 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 03:30:52.444 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-18 03:30:52.574 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1136
17-03-18 03:30:52.574 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1136
17-03-18 03:30:52.584 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:30:52.584 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1136
17-03-18 03:30:52.584 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1136
17-03-18 03:30:52.584 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:30:52.584 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:30:52.584 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-18 03:30:52.594 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:30:52.594 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-18 03:30:52.774 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP 1329
17-03-18 03:30:52.774 -07 000000462 INF: FPGA: Recv CAMDBLSNAP
17-03-18 03:30:52.774 -07 000000610 INF: FPGA: 'CAMDBLSNAP 406 406 195 195 28851 150' command took 2 ms to send, 1331 ms to get response, and 1336 ms overall
17-03-18 03:30:52.774 -07 000000610 INF: Skipping AutoFocus in Tile 8: adopting Best-Z from the cache: -0.131899
17-03-18 03:30:52.774 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 65.7226 mm, moving Z to -0.13190 mm
17-03-18 03:30:52.884 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 03:30:52.884 -07 000000462 INF: Y Motor: Entering MoveAbsStepped (target = 105156 steps, sync = True, waitForSettling = True)
17-03-18 03:30:52.884 -07 000000462 INF: Y Motor: Moving to 65.7226 mm, started at 64.8789 mm, delta = 0.8437 mm
17-03-18 03:30:52.884 -07 000000430 INF: Z Motor: Entering MoveAbsStepped (DAC = 28813, sync = True, waitForSettling = False)
17-03-18 03:30:52.884 -07 000000430 INF: Z Motor: Moving to -0.131897 mm, started at -0.131264 mm, distance = -0.63 um
17-03-18 03:30:52.884 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:30:52.894 -07 000000430 INF: FPGA: Xmit ZDACW 28813\n [Z Motor]
17-03-18 03:30:52.974 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 394 ms.
17-03-18 03:30:52.974 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-18 03:30:52.974 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:30:52.984 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 391 ms.
17-03-18 03:30:52.984 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-18 03:30:52.984 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:30:52.984 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:30:52.984 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 03:30:52.984 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:30:52.994 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-18 03:30:52.994 -07 000000579 INF: FPGA: Recv YRDPOS 132872
17-03-18 03:30:52.994 -07 000000579 INF: FPGA: Recv ZDACW
17-03-18 03:30:52.994 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 106 ms to get response, and 107 ms overall
17-03-18 03:30:52.994 -07 000000462 INF: Y Motor: Encoder = 132872 = motor step 103806.3 = 64.8789 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:30:52.994 -07 000000462 INF: Y Motor: Last commanded position = 64.8926 mm (103828.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 03:30:52.994 -07 000000462 INF: Y Motor: Moving 1350 steps-28
17-03-18 03:30:52.994 -07 000000462 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 03:30:52.994 -07 000000430 INF: FPGA: 'ZDACW 28813' command took 0 ms to send, 96 ms to get response, and 106 ms overall
17-03-18 03:30:53.004 -07 000000430 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:30:53.004 -07 000000579 INF: FPGA: Recv ZDACR 28813
17-03-18 03:30:53.014 -07 000000430 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-18 03:30:53.014 -07 000000430 INF: Z Motor: MoveAbsStepped took 121 ms (did NOT wait for settling yet))
17-03-18 03:30:53.374 -07 000000424 INF: FPGA: Recv YMVTILE
17-03-18 03:30:53.374 -07 000000462 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 378 ms to get response, and 381 ms overall
17-03-18 03:30:53.424 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:30:53.424 -07 000000430 INF: FPGA: Recv YRDPOS 134583
17-03-18 03:30:53.434 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 03:30:53.434 -07 000000462 INF: Y Motor: Encoder = 134583 = motor step 105143.0 = 65.7144 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:30:53.434 -07 000000462 INF: Y Motor: Position error before settling (table move) = -17 encoder counts (-0.008 mm)
17-03-18 03:30:53.434 -07 000000462 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 381 ms, distance = 0.844 mm, average velocity = 2.214 mm/sec
17-03-18 03:30:54.384 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:30:54.384 -07 000000430 INF: FPGA: Recv YRDPOS 134583
17-03-18 03:30:54.394 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:30:54.394 -07 000000462 INF: Y Motor: Encoder = 134583 = motor step 105143.0 = 65.7144 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:30:54.424 -07 000000462 INF: Y Motor: After move to 65.722610, error = -0.008255, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 03:30:54.424 -07 000000462 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 03:30:54.424 -07 000000462 INF: Y Motor: Moved to 65.7144 after 1532 ms (table move)
17-03-18 03:30:54.424 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.131897 mm (DAC = 28813)
17-03-18 03:30:54.424 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:54.424 -07 000000430 INF: FPGA: Recv ZSGSRD 29827
17-03-18 03:30:54.434 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 03:30:54.434 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:54.434 -07 000000424 INF: FPGA: Recv ZSGSRD 29819
17-03-18 03:30:54.444 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:54.444 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:54.444 -07 000000424 INF: FPGA: Recv ZSGSRD 29830
17-03-18 03:30:54.454 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:54.454 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:54.454 -07 000000579 INF: FPGA: Recv ZSGSRD 29824
17-03-18 03:30:54.464 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:54.464 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:54.464 -07 000000430 INF: FPGA: Recv ZSGSRD 29825
17-03-18 03:30:54.474 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:54.474 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:54.474 -07 000000579 INF: FPGA: Recv ZSGSRD 29820
17-03-18 03:30:54.484 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:54.484 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:54.484 -07 000000579 INF: FPGA: Recv ZSGSRD 29812
17-03-18 03:30:54.494 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:54.494 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:54.494 -07 000000579 INF: FPGA: Recv ZSGSRD 29823
17-03-18 03:30:54.504 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:54.504 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:54.504 -07 000000579 INF: FPGA: Recv ZSGSRD 29815
17-03-18 03:30:54.514 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:54.514 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:54.514 -07 000000462 INF: FPGA: Recv ZSGSRD 29823
17-03-18 03:30:54.524 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:54.524 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:30:54.524 -07 000000579 INF: FPGA: Recv ZPIEZORD 25387
17-03-18 03:30:54.534 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:54.534 -07 000000610 INF: Z Motor: Piezo is near 34.2 V (nominally 0 to 100 V), expect near 44.0 V, since DAC is at 4.397 V. Piezo Error = -9.7 V.
17-03-18 03:30:54.534 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.9 um, Read 10 ADC samples: Avg = 29822 (-131.1 uncal um), Error = 0.8 uncal um, Median = 29823 (-131.1 uncal um), StdDev = 5 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 29812 (-131.1 uncal um), Max = 29830 (-131.2 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-18 03:30:54.534 -07 000000610 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29822, posNoise = 8, negNoise = 10
17-03-18 03:30:54.534 -07 000000610 INF: Z Motor: After move to -0.131897, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:30:54.534 -07 000000610 INF: Z Motor: Settle wait time = 1535 ms, measure time = 106 ms (allowed 150 ms), total time = 1641 ms
17-03-18 03:30:54.534 -07 000000610 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-18 03:30:54.584 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1806 ms
17-03-18 03:30:54.584 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 03:30:54.584 -07 000000610 INF: ------------ Scan Snapping tile 8 at Y-position 65.71435546875, Z-position -0.13190620650273. ----------
17-03-18 03:30:54.584 -07 000000610 INF: Cycle	113	Tile	8	Exposure Settings		A	406	G	195	T	195	C	406
17-03-18 03:30:54.584 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28637, sync = True, waitForSettling = True)
17-03-18 03:30:54.584 -07 000000610 INF: Z Motor: Moving to -0.131092 mm, started at -0.131906 mm, distance = 0.81 um
17-03-18 03:30:54.584 -07 000000610 INF: FPGA: Xmit ZDACW 28637\n [Z Motor]
17-03-18 03:30:54.584 -07 000000462 INF: FPGA: Recv ZDACW
17-03-18 03:30:54.594 -07 000000610 INF: FPGA: 'ZDACW 28637' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 03:30:54.594 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:30:54.594 -07 000000430 INF: FPGA: Recv ZDACR 28637
17-03-18 03:30:54.604 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:54.604 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 03:30:54.754 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:54.754 -07 000000424 INF: FPGA: Recv ZSGSRD 29697
17-03-18 03:30:54.764 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:30:54.764 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:54.764 -07 000000579 INF: FPGA: Recv ZSGSRD 29697
17-03-18 03:30:54.774 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:54.774 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:54.774 -07 000000424 INF: FPGA: Recv ZSGSRD 29698
17-03-18 03:30:54.784 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:54.784 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:54.784 -07 000000579 INF: FPGA: Recv ZSGSRD 29697
17-03-18 03:30:54.794 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:54.794 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:54.794 -07 000000430 INF: FPGA: Recv ZSGSRD 29694
17-03-18 03:30:54.804 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:54.804 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:54.804 -07 000000579 INF: FPGA: Recv ZSGSRD 29698
17-03-18 03:30:54.814 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:54.814 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:54.814 -07 000000579 INF: FPGA: Recv ZSGSRD 29694
17-03-18 03:30:54.824 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:54.824 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:54.824 -07 000000462 INF: FPGA: Recv ZSGSRD 29695
17-03-18 03:30:54.834 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:54.834 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:54.834 -07 000000462 INF: FPGA: Recv ZSGSRD 29697
17-03-18 03:30:54.844 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:54.844 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:54.844 -07 000000626 INF: FPGA: Recv ZSGSRD 29698
17-03-18 03:30:54.854 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:54.854 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:30:54.854 -07 000000618 INF: FPGA: Recv ZPIEZORD 25226
17-03-18 03:30:54.864 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:54.864 -07 000000610 INF: Z Motor: Piezo is near 33.9 V (nominally 0 to 100 V), expect near 43.7 V, since DAC is at 4.370 V. Piezo Error = -9.8 V.
17-03-18 03:30:54.864 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.1 um, Read 10 ADC samples: Avg = 29696 (-130.3 uncal um), Error = 0.8 uncal um, Median = 29697 (-130.3 uncal um), StdDev = 2 (0.0 uncal um), Range = 4 (0.0 uncal um), Min = 29694 (-130.3 uncal um), Max = 29698 (-130.3 uncal um), Pos Noise = 2 (0.0 uncal um), Neg Noise = 2 (0.0 uncal um)
17-03-18 03:30:54.864 -07 000000610 INF: Z Motor: ADC noise = 2, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29696, posNoise = 2, negNoise = 2
17-03-18 03:30:54.864 -07 000000610 INF: Z Motor: After move to -0.131092, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:30:54.864 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-18 03:30:54.864 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:30:54.864 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:30:54.864 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:30:54.864 -07 000000606 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 03:30:54.864 -07 000000629 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:30:54.864 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 03:30:54.864 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 03:30:54.864 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:30:54.864 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 03:30:54.864 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 03:30:54.864 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 03:30:54.864 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 03:30:54.874 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 03:30:54.874 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 03:30:54.874 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 03:30:54.874 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 03:30:54.884 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 03:30:54.884 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 03:30:54.884 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-18 03:30:54.884 -07 000000606 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 03:30:54.884 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 406 406 195 195 28813 150\n [Camera]
17-03-18 03:30:55.084 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 03:30:55.494 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 598
17-03-18 03:30:55.494 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 598
17-03-18 03:30:55.494 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:30:55.494 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 598
17-03-18 03:30:55.494 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 598
17-03-18 03:30:55.494 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:30:55.504 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:30:55.504 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 591793880, 0x0, 391868352) start.
17-03-18 03:30:55.504 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:30:55.504 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 03:30:55.684 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28813 791
17-03-18 03:30:55.834 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning grn on 941
17-03-18 03:30:55.874 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 591793880, 0x0, 391868352) end. Duration was 372 ms.
17-03-18 03:30:55.874 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 373 ms.
17-03-18 03:30:55.874 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:30:55.874 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 369 ms.
17-03-18 03:30:55.874 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 370 ms.
17-03-18 03:30:55.874 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:30:55.874 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 03:30:55.874 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-18 03:30:55.874 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 03:30:55.884 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-18 03:30:56.034 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1136
17-03-18 03:30:56.034 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1136
17-03-18 03:30:56.034 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:30:56.034 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1136
17-03-18 03:30:56.034 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1136
17-03-18 03:30:56.034 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:30:56.034 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:30:56.034 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 1458343128, 0x0, 391868352) start.
17-03-18 03:30:56.044 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:30:56.044 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) start.
17-03-18 03:30:56.224 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP 1328
17-03-18 03:30:56.224 -07 000000629 INF: FPGA: Recv CAMDBLSNAP
17-03-18 03:30:56.224 -07 000000610 INF: FPGA: 'CAMDBLSNAP 406 406 195 195 28813 150' command took 2 ms to send, 1324 ms to get response, and 1335 ms overall
17-03-18 03:30:56.224 -07 000000610 INF: Skipping AutoFocus in Tile 9: adopting Best-Z from the cache: -0.131425
17-03-18 03:30:56.224 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 66.5526 mm, moving Z to -0.13142 mm
17-03-18 03:30:56.224 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 03:30:56.234 -07 000000579 INF: Z Motor: Entering MoveAbsStepped (DAC = 28710, sync = True, waitForSettling = False)
17-03-18 03:30:56.234 -07 000000579 INF: Z Motor: Moving to -0.131426 mm, started at -0.131097 mm, distance = -0.33 um
17-03-18 03:30:56.234 -07 000000629 INF: Y Motor: Entering MoveAbsStepped (target = 106484 steps, sync = True, waitForSettling = True)
17-03-18 03:30:56.234 -07 000000629 INF: Y Motor: Moving to 66.5526 mm, started at 65.7144 mm, delta = 0.8382 mm
17-03-18 03:30:56.234 -07 000000579 INF: FPGA: Xmit ZDACW 28710\n [Z Motor]
17-03-18 03:30:56.234 -07 000000462 INF: FPGA: Recv ZDACW
17-03-18 03:30:56.244 -07 000000579 INF: FPGA: 'ZDACW 28710' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 03:30:56.244 -07 000000629 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:30:56.244 -07 000000606 INF: FPGA: Recv YRDPOS 134583
17-03-18 03:30:56.254 -07 000000629 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-18 03:30:56.254 -07 000000629 INF: Y Motor: Encoder = 134583 = motor step 105143.0 = 65.7144 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:30:56.254 -07 000000629 INF: Y Motor: Last commanded position = 65.7226 mm (105156.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 03:30:56.254 -07 000000629 INF: Y Motor: Moving 1341 steps-17
17-03-18 03:30:56.254 -07 000000579 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:30:56.254 -07 000000462 INF: FPGA: Recv ZDACR 28710
17-03-18 03:30:56.264 -07 000000579 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 03:30:56.264 -07 000000579 INF: Z Motor: MoveAbsStepped took 26 ms (did NOT wait for settling yet))
17-03-18 03:30:56.264 -07 000000629 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 03:30:56.414 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 1458343128, 0x0, 391868352) end. Duration was 381 ms.
17-03-18 03:30:56.414 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-18 03:30:56.414 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:30:56.424 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) end. Duration was 376 ms.
17-03-18 03:30:56.424 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-18 03:30:56.424 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:30:56.424 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 03:30:56.424 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-18 03:30:56.424 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 03:30:56.434 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 03:30:56.444 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 113, FrontChillerTemperature: 3.993549,
17-03-18 03:30:56.584 -07 000000430 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 03:30:56.584 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 112. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1642, R2=1712, Total=3354. Warn if over 250 bubbles per interval.
17-03-18 03:30:56.634 -07 000000626 INF: FPGA: Recv YMVTILE
17-03-18 03:30:56.634 -07 000000629 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 388 ms overall
17-03-18 03:30:56.694 -07 000000629 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:30:56.694 -07 000000606 INF: FPGA: Recv YRDPOS 136272
17-03-18 03:30:56.704 -07 000000629 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 03:30:56.704 -07 000000629 INF: Y Motor: Encoder = 136272 = motor step 106462.5 = 66.5391 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:30:56.704 -07 000000629 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-18 03:30:56.704 -07 000000629 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.838 mm, average velocity = 2.160 mm/sec
17-03-18 03:30:57.654 -07 000000629 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:30:57.654 -07 000000467 INF: FPGA: Recv YRDPOS 136273
17-03-18 03:30:57.664 -07 000000629 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:30:57.664 -07 000000629 INF: Y Motor: Encoder = 136273 = motor step 106463.3 = 66.5396 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:30:57.694 -07 000000629 INF: Y Motor: After move to 66.552605, error = -0.013054, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 03:30:57.694 -07 000000629 INF: Y Motor: Position error after settling (table move) = -27 encoder counts (-0.013 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 03:30:57.694 -07 000000629 INF: Y Motor: Moved to 66.5396 after 1456 ms (table move)
17-03-18 03:30:57.694 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.131426 mm (DAC = 28710)
17-03-18 03:30:57.694 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:57.694 -07 000000629 INF: FPGA: Recv ZSGSRD 29747
17-03-18 03:30:57.704 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 03:30:57.704 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:57.704 -07 000000467 INF: FPGA: Recv ZSGSRD 29746
17-03-18 03:30:57.714 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:57.714 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:57.714 -07 000000467 INF: FPGA: Recv ZSGSRD 29756
17-03-18 03:30:57.724 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:57.724 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:57.724 -07 000000606 INF: FPGA: Recv ZSGSRD 29750
17-03-18 03:30:57.734 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:57.734 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:57.734 -07 000000629 INF: FPGA: Recv ZSGSRD 29745
17-03-18 03:30:57.744 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:57.744 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:57.744 -07 000000629 INF: FPGA: Recv ZSGSRD 29741
17-03-18 03:30:57.754 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:57.754 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:57.754 -07 000000629 INF: FPGA: Recv ZSGSRD 29746
17-03-18 03:30:57.764 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:57.764 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:57.764 -07 000000467 INF: FPGA: Recv ZSGSRD 29750
17-03-18 03:30:57.774 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:57.774 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:57.774 -07 000000629 INF: FPGA: Recv ZSGSRD 29749
17-03-18 03:30:57.784 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:57.784 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:57.784 -07 000000467 INF: FPGA: Recv ZSGSRD 29748
17-03-18 03:30:57.794 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:57.794 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:30:57.794 -07 000000629 INF: FPGA: Recv ZPIEZORD 25310
17-03-18 03:30:57.804 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:57.804 -07 000000610 INF: Z Motor: Piezo is near 34.1 V (nominally 0 to 100 V), expect near 43.8 V, since DAC is at 4.381 V. Piezo Error = -9.7 V.
17-03-18 03:30:57.804 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.4 um, Read 10 ADC samples: Avg = 29748 (-130.6 uncal um), Error = 0.8 uncal um, Median = 29748 (-130.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 29741 (-130.6 uncal um), Max = 29756 (-130.7 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 03:30:57.804 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29748, posNoise = 8, negNoise = 7
17-03-18 03:30:57.804 -07 000000610 INF: Z Motor: After move to -0.131426, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:30:57.804 -07 000000610 INF: Z Motor: Settle wait time = 1458 ms, measure time = 108 ms (allowed 150 ms), total time = 1566 ms
17-03-18 03:30:57.804 -07 000000610 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-18 03:30:57.854 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1622 ms
17-03-18 03:30:57.854 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 03:30:57.854 -07 000000610 INF: ------------ Scan Snapping tile 9 at Y-position 66.53955078125, Z-position -0.13143081480424. ----------
17-03-18 03:30:57.854 -07 000000610 INF: Cycle	113	Tile	9	Exposure Settings		A	406	G	195	T	195	C	406
17-03-18 03:30:57.854 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28533, sync = True, waitForSettling = True)
17-03-18 03:30:57.854 -07 000000610 INF: Z Motor: Moving to -0.130616 mm, started at -0.131431 mm, distance = 0.82 um
17-03-18 03:30:57.854 -07 000000610 INF: FPGA: Xmit ZDACW 28533\n [Z Motor]
17-03-18 03:30:57.854 -07 000000629 INF: FPGA: Recv ZDACW
17-03-18 03:30:57.864 -07 000000610 INF: FPGA: 'ZDACW 28533' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 03:30:57.864 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:30:57.864 -07 000000606 INF: FPGA: Recv ZDACR 28533
17-03-18 03:30:57.874 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:57.874 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 03:30:58.024 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:58.024 -07 000000629 INF: FPGA: Recv ZSGSRD 29622
17-03-18 03:30:58.034 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:30:58.034 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:58.034 -07 000000606 INF: FPGA: Recv ZSGSRD 29629
17-03-18 03:30:58.044 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:58.044 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:58.044 -07 000000606 INF: FPGA: Recv ZSGSRD 29620
17-03-18 03:30:58.054 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:58.054 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:58.054 -07 000000618 INF: FPGA: Recv ZSGSRD 29620
17-03-18 03:30:58.064 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:58.064 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:58.064 -07 000000618 INF: FPGA: Recv ZSGSRD 29624
17-03-18 03:30:58.074 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:58.074 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:58.074 -07 000000629 INF: FPGA: Recv ZSGSRD 29620
17-03-18 03:30:58.084 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:58.084 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:58.084 -07 000000501 INF: FPGA: Recv ZSGSRD 29619
17-03-18 03:30:58.094 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:58.094 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:58.094 -07 000000561 INF: FPGA: Recv ZSGSRD 29624
17-03-18 03:30:58.104 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:58.104 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:58.104 -07 000000591 INF: FPGA: Recv ZSGSRD 29622
17-03-18 03:30:58.114 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:58.114 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:30:58.114 -07 000000561 INF: FPGA: Recv ZSGSRD 29624
17-03-18 03:30:58.124 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:58.124 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:30:58.124 -07 000000467 INF: FPGA: Recv ZPIEZORD 25131
17-03-18 03:30:58.134 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:30:58.134 -07 000000610 INF: Z Motor: Piezo is near 33.7 V (nominally 0 to 100 V), expect near 43.5 V, since DAC is at 4.354 V. Piezo Error = -9.9 V.
17-03-18 03:30:58.134 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.6 um, Read 10 ADC samples: Avg = 29622 (-129.8 uncal um), Error = 0.8 uncal um, Median = 29622 (-129.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29619 (-129.8 uncal um), Max = 29629 (-129.9 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 03:30:58.134 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29622, posNoise = 7, negNoise = 3
17-03-18 03:30:58.134 -07 000000610 INF: Z Motor: After move to -0.130616, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:30:58.134 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-18 03:30:58.134 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:30:58.134 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:30:58.134 -07 000000606 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:30:58.134 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:30:58.134 -07 000000629 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 03:30:58.134 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 03:30:58.134 -07 000000591 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 03:30:58.134 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:30:58.134 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 03:30:58.134 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 03:30:58.134 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 03:30:58.134 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 03:30:58.144 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 03:30:58.144 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 03:30:58.144 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 03:30:58.144 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 03:30:58.154 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-18 03:30:58.154 -07 000000629 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 03:30:58.154 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 03:30:58.154 -07 000000591 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 03:30:58.164 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 406 406 195 195 28710 150\n [Camera]
17-03-18 03:30:58.364 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 03:30:58.764 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 598
17-03-18 03:30:58.764 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 598
17-03-18 03:30:58.764 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:30:58.764 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:30:58.764 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 03:30:58.764 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 598
17-03-18 03:30:58.764 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 598
17-03-18 03:30:58.774 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:30:58.774 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:30:58.774 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 03:30:58.954 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28710 791
17-03-18 03:30:59.104 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning grn on 941
17-03-18 03:30:59.144 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 376 ms.
17-03-18 03:30:59.144 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-18 03:30:59.144 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:30:59.144 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 375 ms.
17-03-18 03:30:59.144 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-18 03:30:59.144 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:30:59.144 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 03:30:59.144 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-18 03:30:59.154 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 03:30:59.154 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-18 03:30:59.304 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1138
17-03-18 03:30:59.304 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1138
17-03-18 03:30:59.304 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:30:59.304 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:30:59.304 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) start.
17-03-18 03:30:59.304 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1138
17-03-18 03:30:59.314 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1138
17-03-18 03:30:59.314 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:30:59.314 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:30:59.314 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) start.
17-03-18 03:30:59.494 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP 1328
17-03-18 03:30:59.494 -07 000000561 INF: FPGA: Recv CAMDBLSNAP
17-03-18 03:30:59.494 -07 000000610 INF: FPGA: 'CAMDBLSNAP 406 406 195 195 28710 150' command took 2 ms to send, 1326 ms to get response, and 1335 ms overall
17-03-18 03:30:59.494 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 03:30:59.494 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 10 at Y-position 66.53955078125, Z-Position -0.130621364074378. ------
17-03-18 03:30:59.504 -07 000000629 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 03:30:59.504 -07 000000591 INF: Y Motor: MoveYZ optimized starting. Moving Y to 67.3826 mm, moving Z to -0.13754 mm
17-03-18 03:30:59.504 -07 000000591 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 03:30:59.504 -07 000000561 INF: FPGA: Recv FOCMRRCUR 
17-03-18 03:30:59.504 -07 000000444 INF: Y Motor: Entering MoveAbsStepped (target = 107812 steps, sync = True, waitForSettling = True)
17-03-18 03:30:59.504 -07 000000444 INF: Y Motor: Moving to 67.3826 mm, started at 66.5396 mm, delta = 0.8431 mm
17-03-18 03:30:59.504 -07 000000618 INF: Z Motor: Entering MoveAbsStepped (DAC = 30045, sync = True, waitForSettling = False)
17-03-18 03:30:59.504 -07 000000618 INF: Z Motor: Moving to -0.137537 mm, started at -0.130621 mm, distance = -6.92 um
17-03-18 03:30:59.514 -07 000000629 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 03:30:59.514 -07 000000444 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:30:59.514 -07 000000561 INF: FPGA: Recv YRDPOS 136273
17-03-18 03:30:59.524 -07 000000444 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-18 03:30:59.524 -07 000000444 INF: Y Motor: Encoder = 136273 = motor step 106463.3 = 66.5396 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:30:59.524 -07 000000444 INF: Y Motor: Last commanded position = 66.5526 mm (106484.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 03:30:59.524 -07 000000444 INF: Y Motor: Moving 1349 steps-28
17-03-18 03:30:59.524 -07 000000618 INF: FPGA: Xmit ZDACW 30045\n [Z Motor]
17-03-18 03:30:59.524 -07 000000455 INF: FPGA: Recv ZDACW
17-03-18 03:30:59.534 -07 000000629 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 03:30:59.534 -07 000000618 INF: FPGA: 'ZDACW 30045' command took 1 ms to send, 0 ms to get response, and 21 ms overall
17-03-18 03:30:59.544 -07 000000444 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 03:30:59.554 -07 000000618 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:30:59.554 -07 000000606 INF: FPGA: Recv ZDACR 30045
17-03-18 03:30:59.564 -07 000000618 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 03:30:59.564 -07 000000618 INF: Z Motor: MoveAbsStepped took 52 ms (did NOT wait for settling yet))
17-03-18 03:30:59.684 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) end. Duration was 380 ms.
17-03-18 03:30:59.684 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-18 03:30:59.684 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:30:59.684 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) end. Duration was 377 ms.
17-03-18 03:30:59.684 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-18 03:30:59.684 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:30:59.694 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 03:30:59.694 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-18 03:30:59.694 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 03:30:59.704 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-18 03:30:59.734 -07 000000618 INF: FPGA: Recv FOCMRRFOC
17-03-18 03:30:59.734 -07 000000629 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 03:30:59.914 -07 000000501 INF: FPGA: Recv YMVTILE
17-03-18 03:30:59.914 -07 000000444 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 398 ms overall
17-03-18 03:30:59.964 -07 000000444 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:30:59.964 -07 000000618 INF: FPGA: Recv YRDPOS 137978
17-03-18 03:30:59.974 -07 000000444 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 03:30:59.974 -07 000000444 INF: Y Motor: Encoder = 137978 = motor step 107795.3 = 67.3721 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:30:59.974 -07 000000444 INF: Y Motor: Position error before settling (table move) = -22 encoder counts (-0.011 mm)
17-03-18 03:30:59.974 -07 000000444 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.843 mm, average velocity = 2.118 mm/sec
17-03-18 03:31:00.924 -07 000000444 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:31:00.924 -07 000000455 INF: FPGA: Recv YRDPOS 137978
17-03-18 03:31:00.934 -07 000000444 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:31:00.934 -07 000000444 INF: Y Motor: Encoder = 137978 = motor step 107795.3 = 67.3721 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:31:00.964 -07 000000444 INF: Y Motor: After move to 67.382607, error = -0.010536, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 03:31:00.964 -07 000000444 INF: Y Motor: Position error after settling (table move) = -22 encoder counts (-0.011 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 03:31:00.964 -07 000000444 INF: Y Motor: Moved to 67.3721 after 1453 ms (table move)
17-03-18 03:31:00.964 -07 000000591 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137537 mm (DAC = 30045)
17-03-18 03:31:00.964 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:31:00.964 -07 000000629 INF: FPGA: Recv ZSGSRD 30696
17-03-18 03:31:00.974 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 03:31:00.974 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:31:00.974 -07 000000618 INF: FPGA: Recv ZSGSRD 30697
17-03-18 03:31:00.984 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:31:00.984 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:31:00.984 -07 000000629 INF: FPGA: Recv ZSGSRD 30702
17-03-18 03:31:00.994 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:31:00.994 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:31:00.994 -07 000000618 INF: FPGA: Recv ZSGSRD 30704
17-03-18 03:31:01.004 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:31:01.004 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:31:01.004 -07 000000629 INF: FPGA: Recv ZSGSRD 30695
17-03-18 03:31:01.014 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:31:01.014 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:31:01.014 -07 000000618 INF: FPGA: Recv ZSGSRD 30697
17-03-18 03:31:01.024 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:31:01.024 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:31:01.024 -07 000000618 INF: FPGA: Recv ZSGSRD 30699
17-03-18 03:31:01.034 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:31:01.034 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:31:01.034 -07 000000618 INF: FPGA: Recv ZSGSRD 30698
17-03-18 03:31:01.044 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:31:01.044 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:31:01.044 -07 000000629 INF: FPGA: Recv ZSGSRD 30696
17-03-18 03:31:01.054 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:31:01.054 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:31:01.054 -07 000000629 INF: FPGA: Recv ZSGSRD 30696
17-03-18 03:31:01.064 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:31:01.064 -07 000000591 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:31:01.064 -07 000000618 INF: FPGA: Recv ZPIEZORD 26516
17-03-18 03:31:01.074 -07 000000591 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:31:01.074 -07 000000591 INF: Z Motor: Piezo is near 36.6 V (nominally 0 to 100 V), expect near 45.8 V, since DAC is at 4.585 V. Piezo Error = -9.2 V.
17-03-18 03:31:01.074 -07 000000591 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.5 um, Read 10 ADC samples: Avg = 30698 (-136.7 uncal um), Error = 0.8 uncal um, Median = 30697 (-136.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 30695 (-136.7 uncal um), Max = 30704 (-136.8 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 03:31:01.074 -07 000000591 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30698, posNoise = 6, negNoise = 3
17-03-18 03:31:01.074 -07 000000591 INF: Z Motor: After move to -0.137537, error = 0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:31:01.074 -07 000000591 INF: Z Motor: Settle wait time = 1458 ms, measure time = 104 ms (allowed 150 ms), total time = 1562 ms
17-03-18 03:31:01.074 -07 000000591 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-18 03:31:01.124 -07 000000591 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1615 ms
17-03-18 03:31:01.124 -07 000000591 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 03:31:01.124 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:31:01.124 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:31:01.124 -07 000000591 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:31:01.124 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:31:01.124 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 03:31:01.124 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:31:01.124 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 03:31:01.124 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 03:31:01.134 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 03:31:01.134 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 03:31:01.144 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-18 03:31:01.144 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms.
17-03-18 03:31:01.144 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 03:31:01.194 -07 000000591 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 03:31:01.494 -07 000000629 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 03:31:01.494 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 03:31:01.494 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 03:31:01.494 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1424593000, 0x0, 559484976) start.
17-03-18 03:31:01.534 -07 000000626 INF: FPGA: Recv @CAMSNAP 380
17-03-18 03:31:01.534 -07 000000629 INF: FPGA: Recv CAMSNAP
17-03-18 03:31:01.534 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 373 ms to get response, and 385 ms overall
17-03-18 03:31:01.584 -07 000000618 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 03:31:01.624 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1424593000, 0x0, 559484976) end. Duration was 126 ms.
17-03-18 03:31:01.624 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:31:01.624 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 03:31:01.624 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms.
17-03-18 03:31:01.624 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 112. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1642, R2=1712, Total=3354. Warn if over 250 bubbles per interval.
17-03-18 03:31:01.634 -07 000000591 INF: Autofocus start
17-03-18 03:31:01.634 -07 000000591 INF: MeasureProfile start
17-03-18 03:31:01.634 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 03:31:01.634 -07 000000629 INF: FPGA: Recv FOCMRRCUR 
17-03-18 03:31:01.644 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 03:31:01.644 -07 000000626 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 03:31:01.644 -07 000000591 INF: MeasureProfile done
17-03-18 03:31:01.644 -07 000000591 INF: X=-16  Z correction [um]=-0.08128808
17-03-18 03:31:01.644 -07 000000591 INF: Autofocus finished
17-03-18 03:31:01.804 -07 000000618 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 113, FrontChillerTemperature: 3.994908,
17-03-18 03:31:01.844 -07 000000591 INF: FPGA: Recv FOCMRRIMG
17-03-18 03:31:01.844 -07 000000626 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 03:31:01.844 -07 000000610 INF: ------------ Scan Snapping tile 10 at Y-position 67.3720703125, Z-position -0.137533816338913. ----------
17-03-18 03:31:01.844 -07 000000610 INF: Cycle	113	Tile	10	Exposure Settings		A	406	G	195	T	195	C	406
17-03-18 03:31:01.854 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28540, sync = True, waitForSettling = True)
17-03-18 03:31:01.854 -07 000000610 INF: Z Motor: Moving to -0.130648 mm, started at -0.137534 mm, distance = 6.89 um
17-03-18 03:31:01.854 -07 000000610 INF: FPGA: Xmit ZDACW 28540\n [Z Motor]
17-03-18 03:31:01.854 -07 000000629 INF: FPGA: Recv ZDACW
17-03-18 03:31:01.864 -07 000000610 INF: FPGA: 'ZDACW 28540' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 03:31:01.864 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:31:01.864 -07 000000626 INF: FPGA: Recv ZDACR 28540
17-03-18 03:31:01.874 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:31:01.874 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 03:31:02.024 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:31:02.024 -07 000000629 INF: FPGA: Recv ZSGSRD 29628
17-03-18 03:31:02.034 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:31:02.034 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:31:02.034 -07 000000591 INF: FPGA: Recv ZSGSRD 29633
17-03-18 03:31:02.044 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:31:02.054 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:31:02.054 -07 000000626 INF: FPGA: Recv ZSGSRD 29624
17-03-18 03:31:02.064 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 03:31:02.064 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:31:02.064 -07 000000618 INF: FPGA: Recv ZSGSRD 29625
17-03-18 03:31:02.074 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:31:02.074 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:31:02.074 -07 000000629 INF: FPGA: Recv ZSGSRD 29632
17-03-18 03:31:02.084 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:31:02.084 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:31:02.084 -07 000000618 INF: FPGA: Recv ZSGSRD 29627
17-03-18 03:31:02.094 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:31:02.094 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:31:02.094 -07 000000591 INF: FPGA: Recv ZSGSRD 29624
17-03-18 03:31:02.104 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:31:02.104 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:31:02.104 -07 000000618 INF: FPGA: Recv ZSGSRD 29622
17-03-18 03:31:02.114 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:31:02.114 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:31:02.114 -07 000000618 INF: FPGA: Recv ZSGSRD 29626
17-03-18 03:31:02.124 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:31:02.124 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:31:02.124 -07 000000618 INF: FPGA: Recv ZSGSRD 29626
17-03-18 03:31:02.134 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:31:02.134 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:31:02.134 -07 000000591 INF: FPGA: Recv ZPIEZORD 25115
17-03-18 03:31:02.144 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:31:02.144 -07 000000610 INF: Z Motor: Piezo is near 33.7 V (nominally 0 to 100 V), expect near 43.5 V, since DAC is at 4.355 V. Piezo Error = -9.9 V.
17-03-18 03:31:02.144 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.6 um, Read 10 ADC samples: Avg = 29627 (-129.9 uncal um), Error = 0.8 uncal um, Median = 29626 (-129.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29622 (-129.8 uncal um), Max = 29633 (-129.9 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 03:31:02.144 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29627, posNoise = 6, negNoise = 5
17-03-18 03:31:02.144 -07 000000610 INF: Z Motor: After move to -0.130648, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:31:02.144 -07 000000610 INF: Z Motor: MoveAbsStepped took 290 ms)
17-03-18 03:31:02.144 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:31:02.144 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:31:02.144 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:31:02.144 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:31:02.144 -07 000000430 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 03:31:02.144 -07 000000430 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 03:31:02.144 -07 000000629 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 03:31:02.144 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:31:02.144 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 03:31:02.144 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 03:31:02.144 -07 000000430 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 03:31:02.144 -07 000000430 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 03:31:02.154 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 03:31:02.154 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 03:31:02.154 -07 000000430 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 03:31:02.154 -07 000000430 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 03:31:02.154 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 03:31:02.154 -07 000000629 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 03:31:02.164 -07 000000430 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-18 03:31:02.164 -07 000000430 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 03:31:02.164 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 406 406 195 195 28717 150\n [Camera]
17-03-18 03:31:02.364 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 03:31:02.774 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 598
17-03-18 03:31:02.774 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 598
17-03-18 03:31:02.774 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:31:02.774 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:31:02.774 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-18 03:31:02.774 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 598
17-03-18 03:31:02.774 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 598
17-03-18 03:31:02.774 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:31:02.774 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:31:02.774 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) start.
17-03-18 03:31:02.964 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28717 791
17-03-18 03:31:03.114 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP turning grn on 941
17-03-18 03:31:03.154 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 378 ms.
17-03-18 03:31:03.154 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-18 03:31:03.154 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:31:03.154 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) end. Duration was 376 ms.
17-03-18 03:31:03.154 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-18 03:31:03.154 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:31:03.154 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 03:31:03.154 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-18 03:31:03.154 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 03:31:03.164 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-18 03:31:03.304 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1136
17-03-18 03:31:03.304 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1136
17-03-18 03:31:03.304 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:31:03.304 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:31:03.304 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) start.
17-03-18 03:31:03.314 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1136
17-03-18 03:31:03.314 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1136
17-03-18 03:31:03.314 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:31:03.314 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:31:03.314 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-18 03:31:03.494 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP 1329
17-03-18 03:31:03.504 -07 000000629 INF: FPGA: Recv CAMDBLSNAP
17-03-18 03:31:03.504 -07 000000610 INF: FPGA: 'CAMDBLSNAP 406 406 195 195 28717 150' command took 4 ms to send, 1330 ms to get response, and 1335 ms overall
17-03-18 03:31:03.504 -07 000000610 INF: Skipping AutoFocus in Tile 11: adopting Best-Z from the cache: -0.130928
17-03-18 03:31:03.504 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 68.2126 mm, moving Z to -0.13093 mm
17-03-18 03:31:03.504 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 03:31:03.504 -07 000000591 INF: Y Motor: Entering MoveAbsStepped (target = 109140 steps, sync = True, waitForSettling = True)
17-03-18 03:31:03.504 -07 000000591 INF: Y Motor: Moving to 68.2126 mm, started at 67.3721 mm, delta = 0.8405 mm
17-03-18 03:31:03.504 -07 000000591 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:31:03.504 -07 000000430 INF: Z Motor: Entering MoveAbsStepped (DAC = 28601, sync = True, waitForSettling = False)
17-03-18 03:31:03.504 -07 000000430 INF: Z Motor: Moving to -0.130927 mm, started at -0.130653 mm, distance = -0.27 um
17-03-18 03:31:03.514 -07 000000626 INF: FPGA: Recv YRDPOS 137979
17-03-18 03:31:03.514 -07 000000591 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 03:31:03.514 -07 000000430 INF: FPGA: Xmit ZDACW 28601\n [Z Motor]
17-03-18 03:31:03.514 -07 000000591 INF: Y Motor: Encoder = 137979 = motor step 107796.1 = 67.3726 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:31:03.514 -07 000000626 INF: FPGA: Recv ZDACW
17-03-18 03:31:03.514 -07 000000591 INF: Y Motor: Last commanded position = 67.3826 mm (107812.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 03:31:03.514 -07 000000591 INF: Y Motor: Moving 1344 steps-22
17-03-18 03:31:03.524 -07 000000591 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 03:31:03.524 -07 000000430 INF: FPGA: 'ZDACW 28601' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-18 03:31:03.534 -07 000000430 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:31:03.534 -07 000000606 INF: FPGA: Recv ZDACR 28601
17-03-18 03:31:03.544 -07 000000430 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 03:31:03.544 -07 000000430 INF: Z Motor: MoveAbsStepped took 32 ms (did NOT wait for settling yet))
17-03-18 03:31:03.694 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) end. Duration was 382 ms.
17-03-18 03:31:03.694 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-18 03:31:03.694 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:31:03.694 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 381 ms.
17-03-18 03:31:03.694 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 381 ms.
17-03-18 03:31:03.694 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:31:03.694 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 03:31:03.704 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-18 03:31:03.704 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-18 03:31:03.704 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-18 03:31:03.894 -07 000000618 INF: FPGA: Recv YMVTILE
17-03-18 03:31:03.894 -07 000000591 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 384 ms overall
17-03-18 03:31:03.944 -07 000000591 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:31:03.954 -07 000000606 INF: FPGA: Recv YRDPOS 139684
17-03-18 03:31:03.954 -07 000000591 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 03:31:03.954 -07 000000591 INF: Y Motor: Encoder = 139684 = motor step 109128.1 = 68.2051 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:31:03.954 -07 000000591 INF: Y Motor: Position error before settling (table move) = -15 encoder counts (-0.007 mm)
17-03-18 03:31:03.954 -07 000000591 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 384 ms, distance = 0.841 mm, average velocity = 2.189 mm/sec
17-03-18 03:31:04.904 -07 000000591 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:31:04.904 -07 000000430 INF: FPGA: Recv YRDPOS 139684
17-03-18 03:31:04.914 -07 000000591 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:31:04.914 -07 000000591 INF: Y Motor: Encoder = 139684 = motor step 109128.1 = 68.2051 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:31:04.934 -07 000000591 INF: Y Motor: After move to 68.212608, error = -0.007530, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 03:31:04.934 -07 000000591 INF: Y Motor: Position error after settling (table move) = -15 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 03:31:04.934 -07 000000591 INF: Y Motor: Moved to 68.2051 after 1431 ms (table move)
17-03-18 03:31:04.944 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.130927 mm (DAC = 28601)
17-03-18 03:31:04.944 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:31:04.944 -07 000000591 INF: FPGA: Recv ZSGSRD 29668
17-03-18 03:31:04.954 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 03:31:04.954 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:31:04.954 -07 000000591 INF: FPGA: Recv ZSGSRD 29671
17-03-18 03:31:04.964 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:31:04.964 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:31:04.964 -07 000000430 INF: FPGA: Recv ZSGSRD 29676
17-03-18 03:31:04.974 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:31:04.974 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:31:04.974 -07 000000626 INF: FPGA: Recv ZSGSRD 29670
17-03-18 03:31:04.984 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:31:04.984 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:31:04.984 -07 000000606 INF: FPGA: Recv ZSGSRD 29667
17-03-18 03:31:04.994 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:31:04.994 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:31:04.994 -07 000000462 INF: FPGA: Recv ZSGSRD 29668
17-03-18 03:31:05.004 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:31:05.004 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:31:05.004 -07 000000462 INF: FPGA: Recv ZSGSRD 29672
17-03-18 03:31:05.014 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:31:05.014 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:31:05.014 -07 000000606 INF: FPGA: Recv ZSGSRD 29674
17-03-18 03:31:05.024 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:31:05.024 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:31:05.024 -07 000000462 INF: FPGA: Recv ZSGSRD 29673
17-03-18 03:31:05.034 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:31:05.034 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:31:05.034 -07 000000606 INF: FPGA: Recv ZSGSRD 29672
17-03-18 03:31:05.044 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:31:05.044 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:31:05.044 -07 000000606 INF: FPGA: Recv ZPIEZORD 25209
17-03-18 03:31:05.054 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:31:05.054 -07 000000610 INF: Z Motor: Piezo is near 33.9 V (nominally 0 to 100 V), expect near 43.6 V, since DAC is at 4.364 V. Piezo Error = -9.8 V.
17-03-18 03:31:05.054 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.9 um, Read 10 ADC samples: Avg = 29671 (-130.2 uncal um), Error = 0.8 uncal um, Median = 29672 (-130.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29667 (-130.1 uncal um), Max = 29676 (-130.2 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 03:31:05.054 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29671, posNoise = 5, negNoise = 4
17-03-18 03:31:05.054 -07 000000610 INF: Z Motor: After move to -0.130927, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:31:05.054 -07 000000610 INF: Z Motor: Settle wait time = 1433 ms, measure time = 109 ms (allowed 150 ms), total time = 1542 ms
17-03-18 03:31:05.054 -07 000000610 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-18 03:31:05.104 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1597 ms
17-03-18 03:31:05.104 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 03:31:05.104 -07 000000610 INF: ------------ Scan Snapping tile 11 at Y-position 68.205078125, Z-position -0.130936150469324. ----------
17-03-18 03:31:05.104 -07 000000610 INF: Cycle	113	Tile	11	Exposure Settings		A	406	G	195	T	195	C	406
17-03-18 03:31:05.104 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28425, sync = True, waitForSettling = True)
17-03-18 03:31:05.104 -07 000000610 INF: Z Motor: Moving to -0.130121 mm, started at -0.130936 mm, distance = 0.81 um
17-03-18 03:31:05.104 -07 000000610 INF: FPGA: Xmit ZDACW 28425\n [Z Motor]
17-03-18 03:31:05.104 -07 000000591 INF: FPGA: Recv ZDACW
17-03-18 03:31:05.114 -07 000000610 INF: FPGA: 'ZDACW 28425' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 03:31:05.114 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:31:05.114 -07 000000462 INF: FPGA: Recv ZDACR 28425
17-03-18 03:31:05.124 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:31:05.124 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 03:31:05.274 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:31:05.274 -07 000000462 INF: FPGA: Recv ZSGSRD 29550
17-03-18 03:31:05.284 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:31:05.284 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:31:05.284 -07 000000629 INF: FPGA: Recv ZSGSRD 29547
17-03-18 03:31:05.294 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:31:05.294 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:31:05.294 -07 000000462 INF: FPGA: Recv ZSGSRD 29549
17-03-18 03:31:05.304 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:31:05.304 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:31:05.304 -07 000000629 INF: FPGA: Recv ZSGSRD 29538
17-03-18 03:31:05.314 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:31:05.314 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:31:05.314 -07 000000626 INF: FPGA: Recv ZSGSRD 29547
17-03-18 03:31:05.324 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:31:05.324 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:31:05.324 -07 000000462 INF: FPGA: Recv ZSGSRD 29541
17-03-18 03:31:05.334 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:31:05.334 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:31:05.334 -07 000000626 INF: FPGA: Recv ZSGSRD 29544
17-03-18 03:31:05.344 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:31:05.344 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:31:05.344 -07 000000629 INF: FPGA: Recv ZSGSRD 29547
17-03-18 03:31:05.354 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:31:05.354 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:31:05.354 -07 000000591 INF: FPGA: Recv ZSGSRD 29549
17-03-18 03:31:05.364 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:31:05.364 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:31:05.364 -07 000000629 INF: FPGA: Recv ZSGSRD 29546
17-03-18 03:31:05.374 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:31:05.374 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:31:05.374 -07 000000591 INF: FPGA: Recv ZPIEZORD 25035
17-03-18 03:31:05.384 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:31:05.384 -07 000000610 INF: Z Motor: Piezo is near 33.5 V (nominally 0 to 100 V), expect near 43.4 V, since DAC is at 4.337 V. Piezo Error = -9.9 V.
17-03-18 03:31:05.384 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.1 um, Read 10 ADC samples: Avg = 29546 (-129.4 uncal um), Error = 0.8 uncal um, Median = 29547 (-129.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29538 (-129.3 uncal um), Max = 29550 (-129.4 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 03:31:05.384 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29546, posNoise = 4, negNoise = 8
17-03-18 03:31:05.384 -07 000000610 INF: Z Motor: After move to -0.130121, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:31:05.384 -07 000000610 INF: Z Motor: MoveAbsStepped took 274 ms)
17-03-18 03:31:05.384 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:31:05.384 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:31:05.384 -07 000000591 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:31:05.384 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:31:05.384 -07 000000629 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 03:31:05.384 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:31:05.384 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 03:31:05.384 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 03:31:05.384 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 03:31:05.384 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 03:31:05.384 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 03:31:05.384 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 03:31:05.394 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 03:31:05.394 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 03:31:05.394 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 03:31:05.394 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 03:31:05.404 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 03:31:05.404 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 03:31:05.404 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 03:31:05.404 -07 000000629 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 03:31:05.404 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 406 406 195 195 28601 150\n [Camera]
17-03-18 03:31:05.604 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 03:31:06.004 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 598
17-03-18 03:31:06.004 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 598
17-03-18 03:31:06.014 -07 000000629 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:31:06.014 -07 000000629 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:31:06.014 -07 000000629 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) start.
17-03-18 03:31:06.014 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 598
17-03-18 03:31:06.014 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 598
17-03-18 03:31:06.014 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:31:06.154 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:31:06.154 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) start.
17-03-18 03:31:06.204 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28601 791
17-03-18 03:31:06.354 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP turning grn on 942
17-03-18 03:31:06.404 -07 000000629 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) end. Duration was 394 ms.
17-03-18 03:31:06.404 -07 000000629 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-18 03:31:06.404 -07 000000629 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:31:06.404 -07 000000629 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:31:06.404 -07 000000629 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 03:31:06.524 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) end. Duration was 371 ms.
17-03-18 03:31:06.524 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 372 ms.
17-03-18 03:31:06.524 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:31:06.524 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:31:06.534 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 520 ms.
17-03-18 03:31:06.544 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1136
17-03-18 03:31:06.544 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1136
17-03-18 03:31:06.544 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:31:06.554 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1136
17-03-18 03:31:06.554 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1136
17-03-18 03:31:06.554 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:31:06.554 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:31:06.554 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 03:31:06.554 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:31:06.554 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 03:31:06.584 -07 000000629 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 03:31:06.584 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 112. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1642, R2=1712, Total=3354. Warn if over 250 bubbles per interval.
17-03-18 03:31:06.734 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP 1328
17-03-18 03:31:06.734 -07 000000626 INF: FPGA: Recv CAMDBLSNAP
17-03-18 03:31:06.734 -07 000000610 INF: FPGA: 'CAMDBLSNAP 406 406 195 195 28601 150' command took 2 ms to send, 1328 ms to get response, and 1335 ms overall
17-03-18 03:31:06.744 -07 000000610 INF: Skipping AutoFocus in Tile 12: adopting Best-Z from the cache: -0.130838
17-03-18 03:31:06.744 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.0426 mm, moving Z to -0.13084 mm
17-03-18 03:31:06.744 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 03:31:06.744 -07 000000626 INF: Z Motor: Entering MoveAbsStepped (DAC = 28581, sync = True, waitForSettling = False)
17-03-18 03:31:06.744 -07 000000626 INF: Z Motor: Moving to -0.130835 mm, started at -0.130133 mm, distance = -0.70 um
17-03-18 03:31:06.744 -07 000000626 INF: FPGA: Xmit ZDACW 28581\n [Z Motor]
17-03-18 03:31:06.744 -07 000000561 INF: Y Motor: Entering MoveAbsStepped (target = 110468 steps, sync = True, waitForSettling = True)
17-03-18 03:31:06.744 -07 000000561 INF: Y Motor: Moving to 69.0426 mm, started at 68.2051 mm, delta = 0.8375 mm
17-03-18 03:31:06.744 -07 000000467 INF: FPGA: Recv ZDACW
17-03-18 03:31:06.754 -07 000000626 INF: FPGA: 'ZDACW 28581' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 03:31:06.754 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:31:06.754 -07 000000467 INF: FPGA: Recv YRDPOS 139684
17-03-18 03:31:06.764 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-18 03:31:06.764 -07 000000561 INF: Y Motor: Encoder = 139684 = motor step 109128.1 = 68.2051 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:31:06.764 -07 000000561 INF: Y Motor: Last commanded position = 68.2126 mm (109140.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 03:31:06.764 -07 000000561 INF: Y Motor: Moving 1340 steps-15
17-03-18 03:31:06.764 -07 000000626 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:31:06.764 -07 000000444 INF: FPGA: Recv ZDACR 28581
17-03-18 03:31:06.774 -07 000000626 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-18 03:31:06.774 -07 000000626 INF: Z Motor: MoveAbsStepped took 25 ms (did NOT wait for settling yet))
17-03-18 03:31:06.774 -07 000000561 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 03:31:06.944 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 384 ms.
17-03-18 03:31:06.944 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-18 03:31:06.944 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:31:06.944 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 383 ms.
17-03-18 03:31:06.944 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-18 03:31:06.944 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:31:06.944 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 03:31:06.944 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 03:31:06.944 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 03:31:06.954 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 03:31:07.154 -07 000000626 INF: FPGA: Recv YMVTILE
17-03-18 03:31:07.154 -07 000000561 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 370 ms to get response, and 389 ms overall
17-03-18 03:31:07.164 -07 000000444 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 113, FrontChillerTemperature: 3.999021,
17-03-18 03:31:07.204 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:31:07.204 -07 000000512 INF: FPGA: Recv YRDPOS 141368
17-03-18 03:31:07.214 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 03:31:07.214 -07 000000561 INF: Y Motor: Encoder = 141368 = motor step 110443.8 = 69.0273 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:31:07.214 -07 000000561 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-18 03:31:07.214 -07 000000561 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 390 ms, distance = 0.838 mm, average velocity = 2.148 mm/sec
17-03-18 03:31:08.164 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:31:08.164 -07 000000455 INF: FPGA: Recv YRDPOS 141369
17-03-18 03:31:08.174 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:31:08.174 -07 000000561 INF: Y Motor: Encoder = 141369 = motor step 110444.5 = 69.0278 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:31:08.194 -07 000000561 INF: Y Motor: After move to 69.042610, error = -0.014778, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 03:31:08.194 -07 000000561 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 03:31:08.194 -07 000000561 INF: Y Motor: Moved to 69.0278 after 1454 ms (table move)
17-03-18 03:31:08.204 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.130835 mm (DAC = 28581)
17-03-18 03:31:08.204 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:31:08.204 -07 000000626 INF: FPGA: Recv ZSGSRD 29650
17-03-18 03:31:08.214 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 03:31:08.214 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:31:08.214 -07 000000626 INF: FPGA: Recv ZSGSRD 29660
17-03-18 03:31:08.224 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:31:08.224 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:31:08.224 -07 000000626 INF: FPGA: Recv ZSGSRD 29660
17-03-18 03:31:08.234 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:31:08.234 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:31:08.234 -07 000000626 INF: FPGA: Recv ZSGSRD 29657
17-03-18 03:31:08.244 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:31:08.244 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:31:08.244 -07 000000626 INF: FPGA: Recv ZSGSRD 29653
17-03-18 03:31:08.254 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:31:08.254 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:31:08.254 -07 000000512 INF: FPGA: Recv ZSGSRD 29661
17-03-18 03:31:08.264 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 03:31:08.264 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:31:08.264 -07 000000512 INF: FPGA: Recv ZSGSRD 29657
17-03-18 03:31:08.274 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:31:08.274 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:31:08.274 -07 000000512 INF: FPGA: Recv ZSGSRD 29656
17-03-18 03:31:08.284 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:31:08.284 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:31:08.284 -07 000000512 INF: FPGA: Recv ZSGSRD 29653
17-03-18 03:31:08.294 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:31:08.294 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:31:08.294 -07 000000512 INF: FPGA: Recv ZSGSRD 29660
17-03-18 03:31:08.304 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:31:08.304 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:31:08.304 -07 000000512 INF: FPGA: Recv ZPIEZORD 25201
17-03-18 03:31:08.314 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:31:08.314 -07 000000610 INF: Z Motor: Piezo is near 33.8 V (nominally 0 to 100 V), expect near 43.6 V, since DAC is at 4.361 V. Piezo Error = -9.8 V.
17-03-18 03:31:08.314 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.8 um, Read 10 ADC samples: Avg = 29657 (-130.1 uncal um), Error = 0.8 uncal um, Median = 29657 (-130.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29650 (-130.0 uncal um), Max = 29661 (-130.1 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 03:31:08.314 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29657, posNoise = 4, negNoise = 7
17-03-18 03:31:08.314 -07 000000610 INF: Z Motor: After move to -0.130835, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:31:08.314 -07 000000610 INF: Z Motor: Settle wait time = 1457 ms, measure time = 108 ms (allowed 150 ms), total time = 1565 ms
17-03-18 03:31:08.314 -07 000000610 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-18 03:31:08.364 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1617 ms
17-03-18 03:31:08.364 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 03:31:08.364 -07 000000610 INF: ------------ Scan Snapping tile 12 at Y-position 69.02783203125, Z-position -0.13084621149934. ----------
17-03-18 03:31:08.364 -07 000000610 INF: Cycle	113	Tile	12	Exposure Settings		A	406	G	195	T	195	C	406
17-03-18 03:31:08.364 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28405, sync = True, waitForSettling = True)
17-03-18 03:31:08.364 -07 000000610 INF: Z Motor: Moving to -0.130030 mm, started at -0.130846 mm, distance = 0.82 um
17-03-18 03:31:08.364 -07 000000610 INF: FPGA: Xmit ZDACW 28405\n [Z Motor]
17-03-18 03:31:08.364 -07 000000430 INF: FPGA: Recv ZDACW
17-03-18 03:31:08.374 -07 000000610 INF: FPGA: 'ZDACW 28405' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 03:31:08.374 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:31:08.374 -07 000000444 INF: FPGA: Recv ZDACR 28405
17-03-18 03:31:08.384 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:31:08.384 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 03:31:08.534 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:31:08.534 -07 000000626 INF: FPGA: Recv ZSGSRD 29538
17-03-18 03:31:08.544 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:31:08.544 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:31:08.544 -07 000000444 INF: FPGA: Recv ZSGSRD 29532
17-03-18 03:31:08.554 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:31:08.554 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:31:08.554 -07 000000462 INF: FPGA: Recv ZSGSRD 29529
17-03-18 03:31:08.564 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:31:08.564 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:31:08.564 -07 000000626 INF: FPGA: Recv ZSGSRD 29527
17-03-18 03:31:08.574 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:31:08.574 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:31:08.574 -07 000000444 INF: FPGA: Recv ZSGSRD 29529
17-03-18 03:31:08.584 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:31:08.584 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:31:08.584 -07 000000444 INF: FPGA: Recv ZSGSRD 29534
17-03-18 03:31:08.594 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:31:08.594 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:31:08.594 -07 000000467 INF: FPGA: Recv ZSGSRD 29529
17-03-18 03:31:08.604 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:31:08.604 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:31:08.604 -07 000000512 INF: FPGA: Recv ZSGSRD 29530
17-03-18 03:31:08.614 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:31:08.614 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:31:08.614 -07 000000512 INF: FPGA: Recv ZSGSRD 29534
17-03-18 03:31:08.624 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:31:08.624 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:31:08.624 -07 000000462 INF: FPGA: Recv ZSGSRD 29534
17-03-18 03:31:08.634 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:31:08.634 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:31:08.634 -07 000000626 INF: FPGA: Recv ZPIEZORD 25028
17-03-18 03:31:08.644 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:31:08.644 -07 000000610 INF: Z Motor: Piezo is near 33.5 V (nominally 0 to 100 V), expect near 43.3 V, since DAC is at 4.334 V. Piezo Error = -9.9 V.
17-03-18 03:31:08.644 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.0 um, Read 10 ADC samples: Avg = 29532 (-129.3 uncal um), Error = 0.8 uncal um, Median = 29531 (-129.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29527 (-129.2 uncal um), Max = 29538 (-129.3 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 03:31:08.644 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29532, posNoise = 6, negNoise = 5
17-03-18 03:31:08.644 -07 000000610 INF: Z Motor: After move to -0.130030, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:31:08.644 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-18 03:31:08.644 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:31:08.644 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:31:08.644 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:31:08.644 -07 000000467 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:31:08.644 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 03:31:08.644 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:31:08.644 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 03:31:08.644 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 03:31:08.644 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 03:31:08.644 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 03:31:08.644 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 03:31:08.644 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 03:31:08.654 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 03:31:08.654 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 03:31:08.654 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 03:31:08.654 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 03:31:08.664 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 03:31:08.664 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 03:31:08.664 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-18 03:31:08.664 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 03:31:08.664 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 406 406 195 195 28581 150\n [Camera]
17-03-18 03:31:08.864 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 03:31:09.274 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 598
17-03-18 03:31:09.274 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 598
17-03-18 03:31:09.274 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:31:09.274 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 598
17-03-18 03:31:09.274 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 598
17-03-18 03:31:09.274 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:31:09.404 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:31:09.404 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 1458343128, 0x0, 391868352) start.
17-03-18 03:31:09.404 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:31:09.404 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) start.
17-03-18 03:31:09.464 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28581 791
17-03-18 03:31:09.614 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning grn on 941
17-03-18 03:31:09.774 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 1458343128, 0x0, 391868352) end. Duration was 374 ms.
17-03-18 03:31:09.774 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 375 ms.
17-03-18 03:31:09.774 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:31:09.774 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) end. Duration was 371 ms.
17-03-18 03:31:09.774 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 371 ms.
17-03-18 03:31:09.774 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:31:09.784 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 03:31:09.784 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 505 ms.
17-03-18 03:31:09.784 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 03:31:09.784 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 509 ms.
17-03-18 03:31:09.814 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1136
17-03-18 03:31:09.814 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1136
17-03-18 03:31:09.814 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:31:09.814 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1136
17-03-18 03:31:09.814 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1136
17-03-18 03:31:09.814 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:31:09.814 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:31:09.814 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 03:31:09.824 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:31:09.824 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 03:31:10.004 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP 1328
17-03-18 03:31:10.004 -07 000000512 INF: FPGA: Recv CAMDBLSNAP
17-03-18 03:31:10.004 -07 000000610 INF: FPGA: 'CAMDBLSNAP 406 406 195 195 28581 150' command took 4 ms to send, 1324 ms to get response, and 1335 ms overall
17-03-18 03:31:10.004 -07 000000610 INF: Skipping AutoFocus in Tile 13: adopting Best-Z from the cache: -0.130474
17-03-18 03:31:10.004 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.8726 mm, moving Z to -0.13047 mm
17-03-18 03:31:10.004 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 03:31:10.004 -07 000000512 INF: Y Motor: Entering MoveAbsStepped (target = 111796 steps, sync = True, waitForSettling = True)
17-03-18 03:31:10.004 -07 000000512 INF: Y Motor: Moving to 69.8726 mm, started at 69.0278 mm, delta = 0.8448 mm
17-03-18 03:31:10.004 -07 000000467 INF: Z Motor: Entering MoveAbsStepped (DAC = 28502, sync = True, waitForSettling = False)
17-03-18 03:31:10.004 -07 000000467 INF: Z Motor: Moving to -0.130474 mm, started at -0.130043 mm, distance = -0.43 um
17-03-18 03:31:10.004 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:31:10.014 -07 000000467 INF: FPGA: Xmit ZDACW 28502\n [Z Motor]
17-03-18 03:31:10.194 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 376 ms.
17-03-18 03:31:10.194 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-18 03:31:10.194 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:31:10.194 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 375 ms.
17-03-18 03:31:10.194 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-18 03:31:10.194 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:31:10.204 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 03:31:10.204 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-18 03:31:10.204 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 03:31:10.214 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 03:31:10.214 -07 000000462 INF: FPGA: Recv YRDPOS 141369
17-03-18 03:31:10.214 -07 000000462 INF: FPGA: Recv ZDACW
17-03-18 03:31:10.214 -07 000000467 INF: FPGA: 'ZDACW 28502' command took 0 ms to send, 193 ms to get response, and 204 ms overall
17-03-18 03:31:10.214 -07 000000467 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:31:10.214 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 203 ms to get response, and 204 ms overall
17-03-18 03:31:10.214 -07 000000512 INF: Y Motor: Encoder = 141369 = motor step 110444.5 = 69.0278 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:31:10.214 -07 000000512 INF: Y Motor: Last commanded position = 69.0426 mm (110468.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 03:31:10.214 -07 000000512 INF: Y Motor: Moving 1352 steps-31
17-03-18 03:31:10.214 -07 000000462 INF: FPGA: Recv ZDACR 28502
17-03-18 03:31:10.224 -07 000000467 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 03:31:10.224 -07 000000467 INF: Z Motor: MoveAbsStepped took 211 ms (did NOT wait for settling yet))
17-03-18 03:31:10.224 -07 000000512 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 03:31:10.594 -07 000000462 INF: FPGA: Recv YMVTILE
17-03-18 03:31:10.594 -07 000000512 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 384 ms overall
17-03-18 03:31:10.644 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:31:10.644 -07 000000618 INF: FPGA: Recv YRDPOS 143080
17-03-18 03:31:10.654 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 03:31:10.654 -07 000000512 INF: Y Motor: Encoder = 143080 = motor step 111781.3 = 69.8633 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:31:10.654 -07 000000512 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm)
17-03-18 03:31:10.654 -07 000000512 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 384 ms, distance = 0.845 mm, average velocity = 2.200 mm/sec
17-03-18 03:31:11.584 -07 000000467 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 03:31:11.584 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 112. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1642, R2=1712, Total=3354. Warn if over 250 bubbles per interval.
17-03-18 03:31:11.604 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:31:11.604 -07 000000462 INF: FPGA: Recv YRDPOS 143081
17-03-18 03:31:11.614 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:31:11.614 -07 000000512 INF: Y Motor: Encoder = 143081 = motor step 111782.0 = 69.8638 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:31:11.634 -07 000000512 INF: Y Motor: After move to 69.872612, error = -0.008842, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 03:31:11.634 -07 000000512 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 03:31:11.634 -07 000000512 INF: Y Motor: Moved to 69.8638 after 1630 ms (table move)
17-03-18 03:31:11.644 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.130474 mm (DAC = 28502)
17-03-18 03:31:11.644 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:31:11.644 -07 000000467 INF: FPGA: Recv ZSGSRD 29604
17-03-18 03:31:11.654 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 03:31:11.654 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:31:11.654 -07 000000461 INF: FPGA: Recv ZSGSRD 29605
17-03-18 03:31:11.664 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:31:11.664 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:31:11.664 -07 000000467 INF: FPGA: Recv ZSGSRD 29603
17-03-18 03:31:11.674 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:31:11.674 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:31:11.674 -07 000000461 INF: FPGA: Recv ZSGSRD 29603
17-03-18 03:31:11.684 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:31:11.684 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:31:11.684 -07 000000424 INF: FPGA: Recv ZSGSRD 29598
17-03-18 03:31:11.694 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:31:11.694 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:31:11.694 -07 000000461 INF: FPGA: Recv ZSGSRD 29600
17-03-18 03:31:11.704 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:31:11.704 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:31:11.704 -07 000000462 INF: FPGA: Recv ZSGSRD 29597
17-03-18 03:31:11.714 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:31:11.714 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:31:11.714 -07 000000618 INF: FPGA: Recv ZSGSRD 29599
17-03-18 03:31:11.724 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:31:11.724 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:31:11.724 -07 000000512 INF: FPGA: Recv ZSGSRD 29604
17-03-18 03:31:11.734 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:31:11.734 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:31:11.734 -07 000000618 INF: FPGA: Recv ZSGSRD 29603
17-03-18 03:31:11.744 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:31:11.744 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:31:11.744 -07 000000424 INF: FPGA: Recv ZPIEZORD 25138
17-03-18 03:31:11.754 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:31:11.754 -07 000000610 INF: Z Motor: Piezo is near 33.7 V (nominally 0 to 100 V), expect near 43.5 V, since DAC is at 4.349 V. Piezo Error = -9.8 V.
17-03-18 03:31:11.754 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.5 um, Read 10 ADC samples: Avg = 29602 (-129.7 uncal um), Error = 0.8 uncal um, Median = 29603 (-129.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 29597 (-129.7 uncal um), Max = 29605 (-129.7 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 03:31:11.754 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29602, posNoise = 3, negNoise = 5
17-03-18 03:31:11.754 -07 000000610 INF: Z Motor: After move to -0.130474, error = -0.000019, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:31:11.754 -07 000000610 INF: Z Motor: Settle wait time = 1632 ms, measure time = 109 ms (allowed 150 ms), total time = 1741 ms
17-03-18 03:31:11.754 -07 000000610 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-18 03:31:11.804 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1793 ms
17-03-18 03:31:11.804 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 03:31:11.804 -07 000000610 INF: ------------ Scan Snapping tile 13 at Y-position 69.86376953125, Z-position -0.130492879831543. ----------
17-03-18 03:31:11.804 -07 000000610 INF: Cycle	113	Tile	13	Exposure Settings		A	406	G	195	T	195	C	406
17-03-18 03:31:11.804 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28325, sync = True, waitForSettling = True)
17-03-18 03:31:11.804 -07 000000610 INF: Z Motor: Moving to -0.129664 mm, started at -0.130493 mm, distance = 0.83 um
17-03-18 03:31:11.804 -07 000000610 INF: FPGA: Xmit ZDACW 28325\n [Z Motor]
17-03-18 03:31:11.814 -07 000000461 INF: FPGA: Recv ZDACW
17-03-18 03:31:11.814 -07 000000610 INF: FPGA: 'ZDACW 28325' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 03:31:11.814 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:31:11.814 -07 000000626 INF: FPGA: Recv ZDACR 28325
17-03-18 03:31:11.824 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:31:11.824 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 03:31:11.974 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:31:11.974 -07 000000618 INF: FPGA: Recv ZSGSRD 29477
17-03-18 03:31:11.984 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:31:11.984 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:31:11.984 -07 000000424 INF: FPGA: Recv ZSGSRD 29479
17-03-18 03:31:11.994 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:31:11.994 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:31:11.994 -07 000000461 INF: FPGA: Recv ZSGSRD 29473
17-03-18 03:31:12.004 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:31:12.004 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:31:12.004 -07 000000626 INF: FPGA: Recv ZSGSRD 29475
17-03-18 03:31:12.014 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:31:12.014 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:31:12.014 -07 000000512 INF: FPGA: Recv ZSGSRD 29471
17-03-18 03:31:12.024 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:31:12.024 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:31:12.024 -07 000000424 INF: FPGA: Recv ZSGSRD 29469
17-03-18 03:31:12.034 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:31:12.034 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:31:12.034 -07 000000462 INF: FPGA: Recv ZSGSRD 29475
17-03-18 03:31:12.044 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:31:12.044 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:31:12.044 -07 000000626 INF: FPGA: Recv ZSGSRD 29474
17-03-18 03:31:12.054 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:31:12.054 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:31:12.054 -07 000000462 INF: FPGA: Recv ZSGSRD 29473
17-03-18 03:31:12.064 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:31:12.064 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:31:12.064 -07 000000461 INF: FPGA: Recv ZSGSRD 29478
17-03-18 03:31:12.074 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:31:12.074 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:31:12.074 -07 000000462 INF: FPGA: Recv ZPIEZORD 24999
17-03-18 03:31:12.084 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:31:12.084 -07 000000610 INF: Z Motor: Piezo is near 33.4 V (nominally 0 to 100 V), expect near 43.2 V, since DAC is at 4.322 V. Piezo Error = -9.8 V.
17-03-18 03:31:12.084 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.7 um, Read 10 ADC samples: Avg = 29474 (-128.9 uncal um), Error = 0.8 uncal um, Median = 29474 (-128.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29469 (-128.9 uncal um), Max = 29479 (-128.9 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 03:31:12.084 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29474, posNoise = 5, negNoise = 5
17-03-18 03:31:12.084 -07 000000610 INF: Z Motor: After move to -0.129664, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:31:12.084 -07 000000610 INF: Z Motor: MoveAbsStepped took 274 ms)
17-03-18 03:31:12.084 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:31:12.084 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:31:12.084 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:31:12.084 -07 000000467 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:31:12.084 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 03:31:12.084 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:31:12.084 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 03:31:12.084 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 03:31:12.084 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 03:31:12.084 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 03:31:12.084 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 03:31:12.084 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 03:31:12.094 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 03:31:12.094 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 03:31:12.094 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 03:31:12.094 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 03:31:12.104 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 03:31:12.104 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 03:31:12.104 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 03:31:12.104 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 03:31:12.104 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 406 406 195 195 28502 150\n [Camera]
17-03-18 03:31:12.304 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 03:31:12.524 -07 000000424 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 113, FrontChillerTemperature: 3.981281,
17-03-18 03:31:12.714 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 600
17-03-18 03:31:12.714 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 600
17-03-18 03:31:12.714 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:31:12.714 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:31:12.714 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 03:31:12.714 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 600
17-03-18 03:31:12.714 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 600
17-03-18 03:31:12.714 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:31:12.714 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:31:12.714 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start.
17-03-18 03:31:12.904 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28502 791
17-03-18 03:31:13.054 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP turning grn on 941
17-03-18 03:31:13.094 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 378 ms.
17-03-18 03:31:13.094 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-18 03:31:13.094 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:31:13.094 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 376 ms.
17-03-18 03:31:13.094 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-18 03:31:13.094 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:31:13.094 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 03:31:13.094 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-18 03:31:13.094 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 03:31:13.104 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-18 03:31:13.254 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1136
17-03-18 03:31:13.254 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1136
17-03-18 03:31:13.254 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:31:13.254 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:31:13.254 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) start.
17-03-18 03:31:13.254 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1136
17-03-18 03:31:13.254 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1136
17-03-18 03:31:13.254 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:31:13.254 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:31:13.254 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 03:31:13.444 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP 1328
17-03-18 03:31:13.444 -07 000000579 INF: FPGA: Recv CAMDBLSNAP
17-03-18 03:31:13.444 -07 000000610 INF: FPGA: 'CAMDBLSNAP 406 406 195 195 28502 150' command took 2 ms to send, 1331 ms to get response, and 1338 ms overall
17-03-18 03:31:13.444 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 03:31:13.444 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 14 at Y-position 69.86376953125, Z-Position -0.129670580677397. ------
17-03-18 03:31:13.444 -07 000000579 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 03:31:13.444 -07 000000424 INF: Y Motor: MoveYZ optimized starting. Moving Y to 70.7026 mm, moving Z to -0.13560 mm
17-03-18 03:31:13.444 -07 000000424 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 03:31:13.634 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 378 ms.
17-03-18 03:31:13.634 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-18 03:31:13.634 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:31:13.634 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) end. Duration was 381 ms.
17-03-18 03:31:13.634 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-18 03:31:13.634 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:31:13.634 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 03:31:13.634 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 03:31:13.634 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-18 03:31:13.644 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-18 03:31:13.654 -07 000000461 INF: Y Motor: Entering MoveAbsStepped (target = 113124 steps, sync = True, waitForSettling = True)
17-03-18 03:31:13.654 -07 000000461 INF: Y Motor: Moving to 70.7026 mm, started at 69.8638 mm, delta = 0.8388 mm
17-03-18 03:31:13.654 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:31:13.654 -07 000000626 INF: FPGA: Recv FOCMRRCUR 
17-03-18 03:31:13.654 -07 000000626 INF: FPGA: Recv YRDPOS 143081
17-03-18 03:31:13.654 -07 000000579 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 206 ms to get response, and 210 ms overall
17-03-18 03:31:13.654 -07 000000626 INF: Z Motor: Entering MoveAbsStepped (DAC = 29622, sync = True, waitForSettling = False)
17-03-18 03:31:13.654 -07 000000626 INF: Z Motor: Moving to -0.135601 mm, started at -0.129671 mm, distance = -5.93 um
17-03-18 03:31:13.664 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:31:13.664 -07 000000461 INF: Y Motor: Encoder = 143081 = motor step 111782.0 = 69.8638 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:31:13.664 -07 000000461 INF: Y Motor: Last commanded position = 69.8726 mm (111796.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 03:31:13.664 -07 000000461 INF: Y Motor: Moving 1342 steps-19
17-03-18 03:31:13.664 -07 000000579 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 03:31:13.674 -07 000000626 INF: FPGA: Xmit ZDACW 29622\n [Z Motor]
17-03-18 03:31:13.684 -07 000000461 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 03:31:14.324 -07 000000501 INF: FPGA: Recv ZDACW
17-03-18 03:31:14.324 -07 000000501 INF: FPGA: Recv FOCMRRFOC
17-03-18 03:31:14.324 -07 000000501 INF: FPGA: Recv YMVTILE
17-03-18 03:31:14.324 -07 000000626 INF: FPGA: 'ZDACW 29622' command took 0 ms to send, 640 ms to get response, and 663 ms overall
17-03-18 03:31:14.324 -07 000000626 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:31:14.324 -07 000000579 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 650 ms to get response, and 664 ms overall
17-03-18 03:31:14.324 -07 000000461 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 630 ms to get response, and 660 ms overall
17-03-18 03:31:14.324 -07 000000579 INF: FPGA: Recv ZDACR 29622
17-03-18 03:31:14.334 -07 000000626 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 03:31:14.334 -07 000000626 INF: Z Motor: MoveAbsStepped took 672 ms (did NOT wait for settling yet))
17-03-18 03:31:14.374 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:31:14.374 -07 000000626 INF: FPGA: Recv YRDPOS 144770
17-03-18 03:31:14.384 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:31:14.384 -07 000000461 INF: Y Motor: Encoder = 144770 = motor step 113101.6 = 70.6885 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:31:14.384 -07 000000461 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-18 03:31:14.384 -07 000000461 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 661 ms, distance = 0.839 mm, average velocity = 1.269 mm/sec
17-03-18 03:31:15.334 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:31:15.334 -07 000000626 INF: FPGA: Recv YRDPOS 144770
17-03-18 03:31:15.344 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:31:15.344 -07 000000461 INF: Y Motor: Encoder = 144770 = motor step 113101.6 = 70.6885 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:31:15.364 -07 000000461 INF: Y Motor: After move to 70.702606, error = -0.014130, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 03:31:15.364 -07 000000461 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 03:31:15.364 -07 000000461 INF: Y Motor: Moved to 70.6885 after 1718 ms (table move)
17-03-18 03:31:15.374 -07 000000424 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135601 mm (DAC = 29622)
17-03-18 03:31:15.374 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:31:15.374 -07 000000561 INF: FPGA: Recv ZSGSRD 30401
17-03-18 03:31:15.384 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 03:31:15.384 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:31:15.384 -07 000000461 INF: FPGA: Recv ZSGSRD 30402
17-03-18 03:31:15.394 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:31:15.394 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:31:15.394 -07 000000430 INF: FPGA: Recv ZSGSRD 30397
17-03-18 03:31:15.404 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:31:15.404 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:31:15.404 -07 000000461 INF: FPGA: Recv ZSGSRD 30389
17-03-18 03:31:15.414 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:31:15.414 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:31:15.414 -07 000000430 INF: FPGA: Recv ZSGSRD 30399
17-03-18 03:31:15.424 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:31:15.424 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:31:15.424 -07 000000579 INF: FPGA: Recv ZSGSRD 30389
17-03-18 03:31:15.434 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:31:15.434 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:31:15.434 -07 000000591 INF: FPGA: Recv ZSGSRD 30401
17-03-18 03:31:15.444 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:31:15.444 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:31:15.444 -07 000000629 INF: FPGA: Recv ZSGSRD 30402
17-03-18 03:31:15.454 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:31:15.454 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:31:15.454 -07 000000501 INF: FPGA: Recv ZSGSRD 30402
17-03-18 03:31:15.464 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:31:15.464 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:31:15.464 -07 000000579 INF: FPGA: Recv ZSGSRD 30399
17-03-18 03:31:15.474 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:31:15.474 -07 000000424 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:31:15.474 -07 000000591 INF: FPGA: Recv ZPIEZORD 26199
17-03-18 03:31:15.484 -07 000000424 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:31:15.484 -07 000000424 INF: Z Motor: Piezo is near 36.0 V (nominally 0 to 100 V), expect near 45.2 V, since DAC is at 4.520 V. Piezo Error = -9.2 V.
17-03-18 03:31:15.484 -07 000000424 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.6 um, Read 10 ADC samples: Avg = 30398 (-134.8 uncal um), Error = 0.8 uncal um, Median = 30400 (-134.8 uncal um), StdDev = 5 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 30389 (-134.8 uncal um), Max = 30402 (-134.8 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-18 03:31:15.484 -07 000000424 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30398, posNoise = 4, negNoise = 9
17-03-18 03:31:15.484 -07 000000424 INF: Z Motor: After move to -0.135601, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:31:15.484 -07 000000424 INF: Z Motor: Settle wait time = 1714 ms, measure time = 109 ms (allowed 150 ms), total time = 1823 ms
17-03-18 03:31:15.484 -07 000000424 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-18 03:31:15.534 -07 000000424 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2083 ms
17-03-18 03:31:15.534 -07 000000424 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 03:31:15.534 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:31:15.534 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:31:15.534 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:31:15.534 -07 000000461 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:31:15.534 -07 000000561 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 03:31:15.534 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:31:15.534 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 03:31:15.534 -07 000000561 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 03:31:15.544 -07 000000561 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 03:31:15.544 -07 000000561 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 03:31:15.544 -07 000000561 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 03:31:15.544 -07 000000561 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-18 03:31:15.554 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 03:31:15.594 -07 000000629 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 03:31:15.894 -07 000000461 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 03:31:15.894 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 03:31:15.894 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 03:31:15.894 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1424593000, 0x0, 559484976) start.
17-03-18 03:31:15.934 -07 000000626 INF: FPGA: Recv @CAMSNAP 380
17-03-18 03:31:15.934 -07 000000629 INF: FPGA: Recv CAMSNAP
17-03-18 03:31:15.934 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 03:31:16.014 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1424593000, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 03:31:16.014 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:31:16.014 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 03:31:16.014 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 03:31:16.034 -07 000000579 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 03:31:16.034 -07 000000461 INF: Autofocus start
17-03-18 03:31:16.034 -07 000000461 INF: MeasureProfile start
17-03-18 03:31:16.034 -07 000000424 INF: FPGA: Recv FOCMRRCUR 
17-03-18 03:31:16.044 -07 000000579 INF: FPGA: 'FOCMRRCUR 80' command took 2 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 03:31:16.044 -07 000000579 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 03:31:16.044 -07 000000461 INF: MeasureProfile done
17-03-18 03:31:16.044 -07 000000461 INF: X=16  Z correction [um]=0.0530179
17-03-18 03:31:16.044 -07 000000461 INF: Autofocus finished
17-03-18 03:31:16.244 -07 000000626 INF: FPGA: Recv FOCMRRIMG
17-03-18 03:31:16.244 -07 000000579 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 03:31:16.244 -07 000000610 INF: ------------ Scan Snapping tile 14 at Y-position 70.6884765625, Z-position -0.135606552696385. ----------
17-03-18 03:31:16.244 -07 000000610 INF: Cycle	113	Tile	14	Exposure Settings		A	406	G	195	T	195	C	406
17-03-18 03:31:16.254 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28146, sync = True, waitForSettling = True)
17-03-18 03:31:16.254 -07 000000610 INF: Z Motor: Moving to -0.128844 mm, started at -0.135607 mm, distance = 6.76 um
17-03-18 03:31:16.254 -07 000000610 INF: FPGA: Xmit ZDACW 28146\n [Z Motor]
17-03-18 03:31:16.254 -07 000000430 INF: FPGA: Recv ZDACW
17-03-18 03:31:16.264 -07 000000610 INF: FPGA: 'ZDACW 28146' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 03:31:16.264 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:31:16.264 -07 000000424 INF: FPGA: Recv ZDACR 28146
17-03-18 03:31:16.274 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:31:16.274 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 03:31:16.424 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:31:16.424 -07 000000561 INF: FPGA: Recv ZSGSRD 29345
17-03-18 03:31:16.434 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:31:16.434 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:31:16.434 -07 000000579 INF: FPGA: Recv ZSGSRD 29352
17-03-18 03:31:16.444 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:31:16.444 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:31:16.444 -07 000000561 INF: FPGA: Recv ZSGSRD 29340
17-03-18 03:31:16.454 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:31:16.454 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:31:16.454 -07 000000424 INF: FPGA: Recv ZSGSRD 29342
17-03-18 03:31:16.464 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:31:16.464 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:31:16.464 -07 000000461 INF: FPGA: Recv ZSGSRD 29351
17-03-18 03:31:16.474 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:31:16.474 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:31:16.474 -07 000000591 INF: FPGA: Recv ZSGSRD 29345
17-03-18 03:31:16.484 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:31:16.484 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:31:16.484 -07 000000461 INF: FPGA: Recv ZSGSRD 29350
17-03-18 03:31:16.494 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:31:16.494 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:31:16.494 -07 000000561 INF: FPGA: Recv ZSGSRD 29348
17-03-18 03:31:16.504 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:31:16.504 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:31:16.504 -07 000000579 INF: FPGA: Recv ZSGSRD 29345
17-03-18 03:31:16.514 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:31:16.514 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:31:16.514 -07 000000430 INF: FPGA: Recv ZSGSRD 29354
17-03-18 03:31:16.524 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:31:16.524 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:31:16.524 -07 000000579 INF: FPGA: Recv ZPIEZORD 24826
17-03-18 03:31:16.534 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:31:16.534 -07 000000610 INF: Z Motor: Piezo is near 33.0 V (nominally 0 to 100 V), expect near 42.9 V, since DAC is at 4.295 V. Piezo Error = -9.9 V.
17-03-18 03:31:16.534 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.8 um, Read 10 ADC samples: Avg = 29347 (-128.1 uncal um), Error = 0.8 uncal um, Median = 29346 (-128.1 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 29340 (-128.0 uncal um), Max = 29354 (-128.1 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 03:31:16.534 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29347, posNoise = 7, negNoise = 7
17-03-18 03:31:16.534 -07 000000610 INF: Z Motor: After move to -0.128844, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:31:16.534 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 03:31:16.534 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:31:16.534 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:31:16.534 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 03:31:16.534 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:31:16.534 -07 000000430 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:31:16.534 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 03:31:16.534 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 03:31:16.534 -07 000000591 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:31:16.534 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 03:31:16.534 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 03:31:16.534 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-18 03:31:16.534 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 03:31:16.544 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 03:31:16.544 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 03:31:16.544 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 03:31:16.544 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 03:31:16.554 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 03:31:16.554 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 03:31:16.554 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-18 03:31:16.554 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 03:31:16.554 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 406 406 195 195 28323 150\n [Camera]
17-03-18 03:31:16.584 -07 000000629 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 03:31:16.584 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 112. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1642, R2=1712, Total=3354. Warn if over 250 bubbles per interval.
17-03-18 03:31:16.754 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP turning red on 194
17-03-18 03:31:17.154 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 598
17-03-18 03:31:17.154 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 598
17-03-18 03:31:17.164 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:31:17.164 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:31:17.164 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-18 03:31:17.164 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 598
17-03-18 03:31:17.164 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 598
17-03-18 03:31:17.164 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:31:17.164 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:31:17.164 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) start.
17-03-18 03:31:17.354 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28323 794
17-03-18 03:31:17.504 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning grn on 941
17-03-18 03:31:17.534 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) end. Duration was 375 ms.
17-03-18 03:31:17.534 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-18 03:31:17.534 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:31:17.544 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:31:17.544 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 381 ms.
17-03-18 03:31:17.544 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-18 03:31:17.544 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:31:17.544 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:31:17.544 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-18 03:31:17.544 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-18 03:31:17.694 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1136
17-03-18 03:31:17.694 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1136
17-03-18 03:31:17.694 -07 000000430 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:31:17.704 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1136
17-03-18 03:31:17.704 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1136
17-03-18 03:31:17.704 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:31:17.704 -07 000000430 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:31:17.704 -07 000000430 INF: Camera: sBCa_ReadImage(785074288, 591793880, 0x0, 391868352) start.
17-03-18 03:31:17.704 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:31:17.704 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 03:31:17.884 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP 1328
17-03-18 03:31:17.884 -07 000000461 INF: FPGA: Recv CAMDBLSNAP
17-03-18 03:31:17.884 -07 000000610 INF: FPGA: 'CAMDBLSNAP 406 406 195 195 28323 150' command took 2 ms to send, 1329 ms to get response, and 1336 ms overall
17-03-18 03:31:17.894 -07 000000610 INF: Skipping AutoFocus in Tile 15: adopting Best-Z from the cache: -0.129502
17-03-18 03:31:17.894 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 71.5326 mm, moving Z to -0.12950 mm
17-03-18 03:31:17.894 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 03:31:17.894 -07 000000444 INF: Y Motor: Entering MoveAbsStepped (target = 114452 steps, sync = True, waitForSettling = True)
17-03-18 03:31:17.894 -07 000000444 INF: Y Motor: Moving to 71.5326 mm, started at 70.6885 mm, delta = 0.8441 mm
17-03-18 03:31:17.894 -07 000000444 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:31:17.894 -07 000000591 INF: Z Motor: Entering MoveAbsStepped (DAC = 28290, sync = True, waitForSettling = False)
17-03-18 03:31:17.894 -07 000000591 INF: Z Motor: Moving to -0.129503 mm, started at -0.128855 mm, distance = -0.65 um
17-03-18 03:31:17.894 -07 000000561 INF: FPGA: Recv YRDPOS 144770
17-03-18 03:31:17.904 -07 000000444 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 03:31:17.904 -07 000000444 INF: Y Motor: Encoder = 144770 = motor step 113101.6 = 70.6885 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:31:17.904 -07 000000444 INF: Y Motor: Last commanded position = 70.7026 mm (113124.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 03:31:17.904 -07 000000444 INF: Y Motor: Moving 1351 steps-29
17-03-18 03:31:17.904 -07 000000591 INF: FPGA: Xmit ZDACW 28290\n [Z Motor]
17-03-18 03:31:17.904 -07 000000561 INF: FPGA: Recv ZDACW
17-03-18 03:31:17.914 -07 000000591 INF: FPGA: 'ZDACW 28290' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-18 03:31:17.914 -07 000000591 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:31:17.914 -07 000000561 INF: FPGA: Recv ZDACR 28290
17-03-18 03:31:17.924 -07 000000591 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:31:17.924 -07 000000591 INF: Z Motor: MoveAbsStepped took 25 ms (did NOT wait for settling yet))
17-03-18 03:31:17.924 -07 000000444 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 03:31:17.994 -07 000000591 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 113, FrontChillerTemperature: 3.966297,
17-03-18 03:31:18.104 -07 000000430 INF: Camera: sBCa_ReadImage(785074288, 591793880, 0x0, 391868352) end. Duration was 399 ms.
17-03-18 03:31:18.104 -07 000000430 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 03:31:18.104 -07 000000430 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:31:18.104 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 399 ms.
17-03-18 03:31:18.104 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 03:31:18.104 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:31:18.114 -07 000000430 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 03:31:18.114 -07 000000430 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 412 ms.
17-03-18 03:31:18.114 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 03:31:18.114 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 417 ms.
17-03-18 03:31:18.294 -07 000000591 INF: FPGA: Recv YMVTILE
17-03-18 03:31:18.294 -07 000000444 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 398 ms overall
17-03-18 03:31:18.344 -07 000000444 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:31:18.344 -07 000000430 INF: FPGA: Recv YRDPOS 146470
17-03-18 03:31:18.354 -07 000000444 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 03:31:18.354 -07 000000444 INF: Y Motor: Encoder = 146470 = motor step 114429.7 = 71.5186 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:31:18.354 -07 000000444 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-18 03:31:18.354 -07 000000444 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.844 mm, average velocity = 2.121 mm/sec
17-03-18 03:31:19.304 -07 000000444 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:31:19.304 -07 000000591 INF: FPGA: Recv YRDPOS 146471
17-03-18 03:31:19.314 -07 000000444 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:31:19.314 -07 000000444 INF: Y Motor: Encoder = 146471 = motor step 114430.5 = 71.5190 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:31:19.334 -07 000000444 INF: Y Motor: After move to 71.532608, error = -0.013565, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 03:31:19.344 -07 000000444 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 03:31:19.344 -07 000000444 INF: Y Motor: Moved to 71.5190 after 1446 ms (table move)
17-03-18 03:31:19.344 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.129503 mm (DAC = 28290)
17-03-18 03:31:19.344 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:31:19.344 -07 000000591 INF: FPGA: Recv ZSGSRD 29456
17-03-18 03:31:19.354 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 03:31:19.354 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:31:19.354 -07 000000591 INF: FPGA: Recv ZSGSRD 29446
17-03-18 03:31:19.364 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:31:19.364 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:31:19.364 -07 000000561 INF: FPGA: Recv ZSGSRD 29445
17-03-18 03:31:19.374 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:31:19.374 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:31:19.374 -07 000000430 INF: FPGA: Recv ZSGSRD 29453
17-03-18 03:31:19.384 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:31:19.384 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:31:19.384 -07 000000424 INF: FPGA: Recv ZSGSRD 29454
17-03-18 03:31:19.394 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:31:19.394 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:31:19.394 -07 000000430 INF: FPGA: Recv ZSGSRD 29449
17-03-18 03:31:19.404 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:31:19.404 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:31:19.404 -07 000000444 INF: FPGA: Recv ZSGSRD 29448
17-03-18 03:31:19.414 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:31:19.414 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:31:19.414 -07 000000591 INF: FPGA: Recv ZSGSRD 29442
17-03-18 03:31:19.424 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:31:19.424 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:31:19.424 -07 000000561 INF: FPGA: Recv ZSGSRD 29443
17-03-18 03:31:19.434 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:31:19.434 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:31:19.434 -07 000000424 INF: FPGA: Recv ZSGSRD 29445
17-03-18 03:31:19.444 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:31:19.444 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:31:19.444 -07 000000430 INF: FPGA: Recv ZPIEZORD 25024
17-03-18 03:31:19.454 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:31:19.454 -07 000000610 INF: Z Motor: Piezo is near 33.5 V (nominally 0 to 100 V), expect near 43.2 V, since DAC is at 4.317 V. Piezo Error = -9.7 V.
17-03-18 03:31:19.454 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.5 um, Read 10 ADC samples: Avg = 29448 (-128.7 uncal um), Error = 0.8 uncal um, Median = 29447 (-128.7 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 29442 (-128.7 uncal um), Max = 29456 (-128.8 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 03:31:19.454 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29448, posNoise = 8, negNoise = 6
17-03-18 03:31:19.454 -07 000000610 INF: Z Motor: After move to -0.129503, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:31:19.454 -07 000000610 INF: Z Motor: Settle wait time = 1448 ms, measure time = 108 ms (allowed 150 ms), total time = 1556 ms
17-03-18 03:31:19.454 -07 000000610 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-18 03:31:19.504 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1608 ms
17-03-18 03:31:19.504 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 03:31:19.504 -07 000000610 INF: ------------ Scan Snapping tile 15 at Y-position 71.51904296875, Z-position -0.129503551161712. ----------
17-03-18 03:31:19.504 -07 000000610 INF: Cycle	113	Tile	15	Exposure Settings		A	406	G	195	T	195	C	406
17-03-18 03:31:19.504 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28113, sync = True, waitForSettling = True)
17-03-18 03:31:19.504 -07 000000610 INF: Z Motor: Moving to -0.128693 mm, started at -0.129504 mm, distance = 0.81 um
17-03-18 03:31:19.504 -07 000000610 INF: FPGA: Xmit ZDACW 28113\n [Z Motor]
17-03-18 03:31:19.504 -07 000000591 INF: FPGA: Recv ZDACW
17-03-18 03:31:19.514 -07 000000610 INF: FPGA: 'ZDACW 28113' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 03:31:19.514 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:31:19.514 -07 000000424 INF: FPGA: Recv ZDACR 28113
17-03-18 03:31:19.524 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:31:19.524 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 03:31:19.674 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:31:19.674 -07 000000430 INF: FPGA: Recv ZSGSRD 29322
17-03-18 03:31:19.684 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:31:19.684 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:31:19.684 -07 000000561 INF: FPGA: Recv ZSGSRD 29325
17-03-18 03:31:19.694 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:31:19.694 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:31:19.694 -07 000000430 INF: FPGA: Recv ZSGSRD 29330
17-03-18 03:31:19.704 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:31:19.704 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:31:19.704 -07 000000591 INF: FPGA: Recv ZSGSRD 29325
17-03-18 03:31:19.714 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:31:19.714 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:31:19.714 -07 000000430 INF: FPGA: Recv ZSGSRD 29326
17-03-18 03:31:19.724 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:31:19.724 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:31:19.724 -07 000000444 INF: FPGA: Recv ZSGSRD 29316
17-03-18 03:31:19.734 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:31:19.734 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:31:19.734 -07 000000430 INF: FPGA: Recv ZSGSRD 29328
17-03-18 03:31:19.744 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:31:19.744 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:31:19.744 -07 000000591 INF: FPGA: Recv ZSGSRD 29322
17-03-18 03:31:19.754 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:31:19.754 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:31:19.754 -07 000000430 INF: FPGA: Recv ZSGSRD 29318
17-03-18 03:31:19.764 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:31:19.764 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:31:19.764 -07 000000424 INF: FPGA: Recv ZSGSRD 29321
17-03-18 03:31:19.774 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:31:19.774 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:31:19.774 -07 000000455 INF: FPGA: Recv ZPIEZORD 24829
17-03-18 03:31:19.784 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:31:19.784 -07 000000610 INF: Z Motor: Piezo is near 33.0 V (nominally 0 to 100 V), expect near 42.9 V, since DAC is at 4.290 V. Piezo Error = -9.9 V.
17-03-18 03:31:19.784 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.7 um, Read 10 ADC samples: Avg = 29323 (-127.9 uncal um), Error = 0.8 uncal um, Median = 29324 (-127.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 29316 (-127.9 uncal um), Max = 29330 (-128.0 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 03:31:19.784 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29323, posNoise = 7, negNoise = 7
17-03-18 03:31:19.784 -07 000000610 INF: Z Motor: After move to -0.128693, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:31:19.784 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-18 03:31:19.784 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:31:19.784 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:31:19.784 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:31:19.784 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:31:19.784 -07 000000455 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 03:31:19.784 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:31:19.784 -07 000000591 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 03:31:19.784 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 03:31:19.784 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 03:31:19.784 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-18 03:31:19.784 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 03:31:19.784 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 03:31:19.794 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-18 03:31:19.794 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 03:31:19.794 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-18 03:31:19.794 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 03:31:19.804 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 12 ms.
17-03-18 03:31:19.804 -07 000000591 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 03:31:19.804 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 13 ms.
17-03-18 03:31:19.804 -07 000000455 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 03:31:19.804 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 406 406 195 195 28290 150\n [Camera]
17-03-18 03:31:20.004 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 03:31:20.414 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 599
17-03-18 03:31:20.414 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 599
17-03-18 03:31:20.414 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:31:20.414 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:31:20.414 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 03:31:20.414 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 599
17-03-18 03:31:20.414 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 599
17-03-18 03:31:20.414 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:31:20.414 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:31:20.414 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 03:31:20.604 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28290 791
17-03-18 03:31:20.754 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP turning grn on 941
17-03-18 03:31:20.794 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 376 ms.
17-03-18 03:31:20.794 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-18 03:31:20.794 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:31:20.794 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 375 ms.
17-03-18 03:31:20.794 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-18 03:31:20.794 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:31:20.794 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 03:31:20.794 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-18 03:31:20.794 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 03:31:20.804 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-18 03:31:20.954 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1136
17-03-18 03:31:20.954 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1136
17-03-18 03:31:20.954 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:31:21.074 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1136
17-03-18 03:31:21.074 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1136
17-03-18 03:31:21.074 -07 000000430 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:31:21.074 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:31:21.074 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 591793880, 0x0, 391868352) start.
17-03-18 03:31:21.084 -07 000000430 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:31:21.084 -07 000000430 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 03:31:21.144 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP 1329
17-03-18 03:31:21.144 -07 000000467 INF: FPGA: Recv CAMDBLSNAP
17-03-18 03:31:21.144 -07 000000610 INF: FPGA: 'CAMDBLSNAP 406 406 195 195 28290 150' command took 2 ms to send, 1324 ms to get response, and 1336 ms overall
17-03-18 03:31:21.144 -07 000000610 INF: Skipping AutoFocus in Tile 16: adopting Best-Z from the cache: -0.129034
17-03-18 03:31:21.144 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 72.3626 mm, moving Z to -0.12903 mm
17-03-18 03:31:21.144 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 03:31:21.144 -07 000000618 INF: Y Motor: Entering MoveAbsStepped (target = 115780 steps, sync = True, waitForSettling = True)
17-03-18 03:31:21.144 -07 000000618 INF: Y Motor: Moving to 72.3626 mm, started at 71.5190 mm, delta = 0.8436 mm
17-03-18 03:31:21.144 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:31:21.154 -07 000000462 INF: Z Motor: Entering MoveAbsStepped (DAC = 28188, sync = True, waitForSettling = False)
17-03-18 03:31:21.154 -07 000000462 INF: Z Motor: Moving to -0.129036 mm, started at -0.128701 mm, distance = -0.34 um
17-03-18 03:31:21.154 -07 000000462 INF: FPGA: Xmit ZDACW 28188\n [Z Motor]
17-03-18 03:31:21.154 -07 000000561 INF: FPGA: Recv YRDPOS 146471
17-03-18 03:31:21.154 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 4 ms to get response, and 4 ms overall
17-03-18 03:31:21.154 -07 000000618 INF: Y Motor: Encoder = 146471 = motor step 114430.5 = 71.5190 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:31:21.154 -07 000000618 INF: Y Motor: Last commanded position = 71.5326 mm (114452.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 03:31:21.154 -07 000000618 INF: Y Motor: Moving 1350 steps-29
17-03-18 03:31:21.154 -07 000000467 INF: FPGA: Recv ZDACW
17-03-18 03:31:21.164 -07 000000462 INF: FPGA: 'ZDACW 28188' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:31:21.164 -07 000000462 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:31:21.164 -07 000000561 INF: FPGA: Recv ZDACR 28188
17-03-18 03:31:21.174 -07 000000618 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 03:31:21.174 -07 000000462 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:31:21.174 -07 000000462 INF: Z Motor: MoveAbsStepped took 19 ms (did NOT wait for settling yet))
17-03-18 03:31:21.474 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 591793880, 0x0, 391868352) end. Duration was 400 ms.
17-03-18 03:31:21.474 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 03:31:21.474 -07 000000444 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:31:21.474 -07 000000430 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 399 ms.
17-03-18 03:31:21.474 -07 000000430 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 03:31:21.484 -07 000000430 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:31:21.484 -07 000000444 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 03:31:21.484 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 526 ms.
17-03-18 03:31:21.484 -07 000000430 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 03:31:21.494 -07 000000430 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 416 ms.
17-03-18 03:31:21.544 -07 000000591 INF: FPGA: Recv YMVTILE
17-03-18 03:31:21.544 -07 000000618 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 367 ms to get response, and 393 ms overall
17-03-18 03:31:21.584 -07 000000430 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 03:31:21.584 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 112. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1642, R2=1712, Total=3354. Warn if over 250 bubbles per interval.
17-03-18 03:31:21.594 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:31:21.594 -07 000000467 INF: FPGA: Recv YRDPOS 148172
17-03-18 03:31:21.604 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 03:31:21.604 -07 000000618 INF: Y Motor: Encoder = 148172 = motor step 115759.4 = 72.3496 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:31:21.604 -07 000000618 INF: Y Motor: Position error before settling (table move) = -27 encoder counts (-0.013 mm)
17-03-18 03:31:21.604 -07 000000618 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 393 ms, distance = 0.844 mm, average velocity = 2.146 mm/sec
17-03-18 03:31:22.554 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:31:22.554 -07 000000424 INF: FPGA: Recv YRDPOS 148172
17-03-18 03:31:22.564 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:31:22.564 -07 000000618 INF: Y Motor: Encoder = 148172 = motor step 115759.4 = 72.3496 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:31:22.584 -07 000000618 INF: Y Motor: After move to 72.362610, error = -0.013000, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 03:31:22.584 -07 000000618 INF: Y Motor: Position error after settling (table move) = -27 encoder counts (-0.013 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 03:31:22.584 -07 000000618 INF: Y Motor: Moved to 72.3496 after 1439 ms (table move)
17-03-18 03:31:22.594 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.129036 mm (DAC = 28188)
17-03-18 03:31:22.594 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:31:22.594 -07 000000462 INF: FPGA: Recv ZSGSRD 29376
17-03-18 03:31:22.604 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 03:31:22.604 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:31:22.604 -07 000000444 INF: FPGA: Recv ZSGSRD 29377
17-03-18 03:31:22.614 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:31:22.614 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:31:22.614 -07 000000455 INF: FPGA: Recv ZSGSRD 29377
17-03-18 03:31:22.624 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:31:22.624 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:31:22.624 -07 000000467 INF: FPGA: Recv ZSGSRD 29380
17-03-18 03:31:22.634 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:31:22.634 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:31:22.634 -07 000000467 INF: FPGA: Recv ZSGSRD 29379
17-03-18 03:31:22.644 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:31:22.644 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:31:22.644 -07 000000618 INF: FPGA: Recv ZSGSRD 29380
17-03-18 03:31:22.654 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:31:22.654 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:31:22.654 -07 000000430 INF: FPGA: Recv ZSGSRD 29377
17-03-18 03:31:22.664 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:31:22.664 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:31:22.664 -07 000000467 INF: FPGA: Recv ZSGSRD 29372
17-03-18 03:31:22.674 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:31:22.674 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:31:22.674 -07 000000618 INF: FPGA: Recv ZSGSRD 29373
17-03-18 03:31:22.684 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:31:22.684 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:31:22.684 -07 000000512 INF: FPGA: Recv ZSGSRD 29376
17-03-18 03:31:22.694 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:31:22.694 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:31:22.694 -07 000000467 INF: FPGA: Recv ZPIEZORD 24941
17-03-18 03:31:22.704 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:31:22.704 -07 000000610 INF: Z Motor: Piezo is near 33.3 V (nominally 0 to 100 V), expect near 43.0 V, since DAC is at 4.301 V. Piezo Error = -9.7 V.
17-03-18 03:31:22.704 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.0 um, Read 10 ADC samples: Avg = 29377 (-128.3 uncal um), Error = 0.8 uncal um, Median = 29377 (-128.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 29372 (-128.2 uncal um), Max = 29380 (-128.3 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 03:31:22.704 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29377, posNoise = 3, negNoise = 5
17-03-18 03:31:22.704 -07 000000610 INF: Z Motor: After move to -0.129036, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:31:22.704 -07 000000610 INF: Z Motor: Settle wait time = 1440 ms, measure time = 110 ms (allowed 150 ms), total time = 1550 ms
17-03-18 03:31:22.704 -07 000000610 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-18 03:31:22.744 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1593 ms
17-03-18 03:31:22.744 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 03:31:22.744 -07 000000610 INF: ------------ Scan Snapping tile 16 at Y-position 72.349609375, Z-position -0.129047432099647. ----------
17-03-18 03:31:22.744 -07 000000610 INF: Cycle	113	Tile	16	Exposure Settings		A	406	G	195	T	195	C	406
17-03-18 03:31:22.744 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28011, sync = True, waitForSettling = True)
17-03-18 03:31:22.744 -07 000000610 INF: Z Motor: Moving to -0.128226 mm, started at -0.129047 mm, distance = 0.82 um
17-03-18 03:31:22.744 -07 000000610 INF: FPGA: Xmit ZDACW 28011\n [Z Motor]
17-03-18 03:31:22.744 -07 000000455 INF: FPGA: Recv ZDACW
17-03-18 03:31:22.754 -07 000000610 INF: FPGA: 'ZDACW 28011' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 03:31:22.754 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:31:22.754 -07 000000430 INF: FPGA: Recv ZDACR 28011
17-03-18 03:31:22.764 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:31:22.764 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 03:31:22.914 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:31:22.914 -07 000000430 INF: FPGA: Recv ZSGSRD 29253
17-03-18 03:31:22.924 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:31:22.924 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:31:22.924 -07 000000455 INF: FPGA: Recv ZSGSRD 29246
17-03-18 03:31:22.934 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:31:22.934 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:31:22.934 -07 000000618 INF: FPGA: Recv ZSGSRD 29248
17-03-18 03:31:22.944 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:31:22.944 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:31:22.944 -07 000000430 INF: FPGA: Recv ZSGSRD 29250
17-03-18 03:31:22.954 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:31:22.954 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:31:22.954 -07 000000455 INF: FPGA: Recv ZSGSRD 29251
17-03-18 03:31:22.964 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:31:22.964 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:31:22.964 -07 000000455 INF: FPGA: Recv ZSGSRD 29252
17-03-18 03:31:22.974 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:31:22.974 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:31:22.974 -07 000000455 INF: FPGA: Recv ZSGSRD 29248
17-03-18 03:31:22.984 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:31:22.984 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:31:22.984 -07 000000618 INF: FPGA: Recv ZSGSRD 29248
17-03-18 03:31:22.994 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:31:22.994 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:31:22.994 -07 000000455 INF: FPGA: Recv ZSGSRD 29249
17-03-18 03:31:23.004 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:31:23.004 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:31:23.004 -07 000000512 INF: FPGA: Recv ZSGSRD 29247
17-03-18 03:31:23.014 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:31:23.014 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:31:23.014 -07 000000430 INF: FPGA: Recv ZPIEZORD 24737
17-03-18 03:31:23.024 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:31:23.024 -07 000000610 INF: Z Motor: Piezo is near 32.8 V (nominally 0 to 100 V), expect near 42.7 V, since DAC is at 4.274 V. Piezo Error = -9.9 V.
17-03-18 03:31:23.024 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.2 um, Read 10 ADC samples: Avg = 29249 (-127.5 uncal um), Error = 0.8 uncal um, Median = 29248 (-127.4 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 29246 (-127.4 uncal um), Max = 29253 (-127.5 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 03:31:23.024 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29249, posNoise = 4, negNoise = 3
17-03-18 03:31:23.024 -07 000000610 INF: Z Motor: After move to -0.128226, error = 0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:31:23.024 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-18 03:31:23.024 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:31:23.024 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:31:23.024 -07 000000455 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:31:23.024 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:31:23.024 -07 000000467 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 03:31:23.024 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:31:23.024 -07 000000430 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 03:31:23.024 -07 000000430 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 03:31:23.024 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 03:31:23.024 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 03:31:23.024 -07 000000430 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 03:31:23.024 -07 000000430 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 03:31:23.034 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-18 03:31:23.034 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 03:31:23.034 -07 000000430 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-18 03:31:23.034 -07 000000430 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 03:31:23.044 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 03:31:23.044 -07 000000467 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 03:31:23.044 -07 000000430 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 03:31:23.044 -07 000000430 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 03:31:23.054 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 406 406 195 195 28188 150\n [Camera]
17-03-18 03:31:23.254 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 03:31:23.354 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 113, FrontChillerTemperature: 3.990831,
17-03-18 03:31:23.654 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 598
17-03-18 03:31:23.654 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 598
17-03-18 03:31:23.654 -07 000000430 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:31:23.654 -07 000000430 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:31:23.654 -07 000000430 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 03:31:23.654 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 598
17-03-18 03:31:23.664 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 598
17-03-18 03:31:23.664 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:31:23.664 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:31:23.664 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 03:31:23.844 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28188 791
17-03-18 03:31:23.994 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP turning grn on 941
17-03-18 03:31:24.034 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 374 ms.
17-03-18 03:31:24.034 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-18 03:31:24.034 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:31:24.034 -07 000000430 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 377 ms.
17-03-18 03:31:24.034 -07 000000430 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-18 03:31:24.034 -07 000000430 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:31:24.044 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 03:31:24.044 -07 000000430 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 03:31:24.044 -07 000000430 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-18 03:31:24.044 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-18 03:31:24.194 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1136
17-03-18 03:31:24.194 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1136
17-03-18 03:31:24.194 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:31:24.194 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:31:24.194 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) start.
17-03-18 03:31:24.194 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1136
17-03-18 03:31:24.194 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1136
17-03-18 03:31:24.194 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:31:24.194 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:31:24.194 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) start.
17-03-18 03:31:24.384 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP 1329
17-03-18 03:31:24.384 -07 000000467 INF: FPGA: Recv CAMDBLSNAP
17-03-18 03:31:24.384 -07 000000610 INF: FPGA: 'CAMDBLSNAP 406 406 195 195 28188 150' command took 2 ms to send, 1326 ms to get response, and 1335 ms overall
17-03-18 03:31:24.384 -07 000000610 INF: Skipping AutoFocus in Tile 17: adopting Best-Z from the cache: -0.128789
17-03-18 03:31:24.384 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 73.1926 mm, moving Z to -0.12879 mm
17-03-18 03:31:24.384 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 03:31:24.394 -07 000000561 INF: Y Motor: Entering MoveAbsStepped (target = 117108 steps, sync = True, waitForSettling = True)
17-03-18 03:31:24.394 -07 000000561 INF: Y Motor: Moving to 73.1926 mm, started at 72.3496 mm, delta = 0.8430 mm
17-03-18 03:31:24.394 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:31:24.394 -07 000000629 INF: Z Motor: Entering MoveAbsStepped (DAC = 28134, sync = True, waitForSettling = False)
17-03-18 03:31:24.394 -07 000000629 INF: Z Motor: Moving to -0.128789 mm, started at -0.128225 mm, distance = -0.56 um
17-03-18 03:31:24.394 -07 000000461 INF: FPGA: Recv YRDPOS 148172
17-03-18 03:31:24.404 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 03:31:24.404 -07 000000561 INF: Y Motor: Encoder = 148172 = motor step 115759.4 = 72.3496 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:31:24.404 -07 000000629 INF: FPGA: Xmit ZDACW 28134\n [Z Motor]
17-03-18 03:31:24.404 -07 000000561 INF: Y Motor: Last commanded position = 72.3626 mm (115780.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 03:31:24.404 -07 000000561 INF: Y Motor: Moving 1349 steps-27
17-03-18 03:31:24.404 -07 000000430 INF: FPGA: Recv ZDACW
17-03-18 03:31:24.414 -07 000000629 INF: FPGA: 'ZDACW 28134' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-18 03:31:24.414 -07 000000629 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:31:24.414 -07 000000455 INF: FPGA: Recv ZDACR 28134
17-03-18 03:31:24.424 -07 000000561 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 03:31:24.424 -07 000000629 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:31:24.424 -07 000000629 INF: Z Motor: MoveAbsStepped took 28 ms (did NOT wait for settling yet))
17-03-18 03:31:24.574 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) end. Duration was 380 ms.
17-03-18 03:31:24.574 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-18 03:31:24.574 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:31:24.574 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) end. Duration was 378 ms.
17-03-18 03:31:24.574 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-18 03:31:24.574 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:31:24.584 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 03:31:24.584 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-18 03:31:24.584 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 03:31:24.584 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-18 03:31:24.794 -07 000000430 INF: FPGA: Recv YMVTILE
17-03-18 03:31:24.794 -07 000000561 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 03:31:24.844 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:31:24.844 -07 000000467 INF: FPGA: Recv YRDPOS 149865
17-03-18 03:31:24.854 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 03:31:24.854 -07 000000561 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:31:24.854 -07 000000561 INF: Y Motor: Position error before settling (table move) = -33 encoder counts (-0.016 mm)
17-03-18 03:31:24.854 -07 000000561 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.843 mm, average velocity = 2.118 mm/sec
17-03-18 03:31:25.804 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:31:25.804 -07 000000461 INF: FPGA: Recv YRDPOS 149865
17-03-18 03:31:25.814 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:31:25.814 -07 000000561 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:31:25.834 -07 000000561 INF: Y Motor: After move to 73.192604, error = -0.016335, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 03:31:25.834 -07 000000561 INF: Y Motor: Position error after settling (table move) = -33 encoder counts (-0.016 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 03:31:25.834 -07 000000561 INF: Y Motor: Moved to 73.1763 after 1447 ms (table move)
17-03-18 03:31:25.844 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.128789 mm (DAC = 28134)
17-03-18 03:31:25.844 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:31:25.844 -07 000000618 INF: FPGA: Recv ZSGSRD 29339
17-03-18 03:31:25.854 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 03:31:25.854 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:31:25.854 -07 000000618 INF: FPGA: Recv ZSGSRD 29334
17-03-18 03:31:25.864 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:31:25.864 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:31:25.864 -07 000000501 INF: FPGA: Recv ZSGSRD 29333
17-03-18 03:31:25.874 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 03:31:25.874 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:31:25.874 -07 000000618 INF: FPGA: Recv ZSGSRD 29339
17-03-18 03:31:25.884 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:31:25.884 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:31:25.884 -07 000000618 INF: FPGA: Recv ZSGSRD 29342
17-03-18 03:31:25.894 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:31:25.894 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:31:25.894 -07 000000618 INF: FPGA: Recv ZSGSRD 29342
17-03-18 03:31:25.904 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:31:25.904 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:31:25.904 -07 000000430 INF: FPGA: Recv ZSGSRD 29334
17-03-18 03:31:25.914 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:31:25.914 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:31:25.914 -07 000000618 INF: FPGA: Recv ZSGSRD 29341
17-03-18 03:31:25.924 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:31:25.924 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:31:25.924 -07 000000618 INF: FPGA: Recv ZSGSRD 29337
17-03-18 03:31:25.934 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:31:25.934 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:31:25.934 -07 000000455 INF: FPGA: Recv ZSGSRD 29337
17-03-18 03:31:25.944 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:31:25.944 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:31:25.944 -07 000000626 INF: FPGA: Recv ZPIEZORD 24878
17-03-18 03:31:25.954 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:31:25.954 -07 000000610 INF: Z Motor: Piezo is near 33.1 V (nominally 0 to 100 V), expect near 42.9 V, since DAC is at 4.293 V. Piezo Error = -9.8 V.
17-03-18 03:31:25.954 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.8 um, Read 10 ADC samples: Avg = 29338 (-128.0 uncal um), Error = 0.8 uncal um, Median = 29338 (-128.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29333 (-128.0 uncal um), Max = 29342 (-128.0 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 03:31:25.954 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29338, posNoise = 4, negNoise = 5
17-03-18 03:31:25.954 -07 000000610 INF: Z Motor: After move to -0.128789, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:31:25.954 -07 000000610 INF: Z Motor: Settle wait time = 1449 ms, measure time = 109 ms (allowed 150 ms), total time = 1558 ms
17-03-18 03:31:25.954 -07 000000610 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-18 03:31:26.004 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1611 ms
17-03-18 03:31:26.004 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 03:31:26.004 -07 000000610 INF: ------------ Scan Snapping tile 17 at Y-position 73.17626953125, Z-position -0.128796887826118. ----------
17-03-18 03:31:26.004 -07 000000610 INF: Cycle	113	Tile	17	Exposure Settings		A	406	G	195	T	195	C	406
17-03-18 03:31:26.004 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27957, sync = True, waitForSettling = True)
17-03-18 03:31:26.004 -07 000000610 INF: Z Motor: Moving to -0.127979 mm, started at -0.128797 mm, distance = 0.82 um
17-03-18 03:31:26.004 -07 000000610 INF: FPGA: Xmit ZDACW 27957\n [Z Motor]
17-03-18 03:31:26.004 -07 000000467 INF: FPGA: Recv ZDACW
17-03-18 03:31:26.014 -07 000000610 INF: FPGA: 'ZDACW 27957' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 03:31:26.014 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:31:26.014 -07 000000467 INF: FPGA: Recv ZDACR 27957
17-03-18 03:31:26.024 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:31:26.024 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 03:31:26.174 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:31:26.174 -07 000000467 INF: FPGA: Recv ZSGSRD 29209
17-03-18 03:31:26.184 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:31:26.184 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:31:26.184 -07 000000512 INF: FPGA: Recv ZSGSRD 29213
17-03-18 03:31:26.194 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:31:26.194 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:31:26.194 -07 000000430 INF: FPGA: Recv ZSGSRD 29217
17-03-18 03:31:26.204 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:31:26.204 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:31:26.204 -07 000000629 INF: FPGA: Recv ZSGSRD 29208
17-03-18 03:31:26.214 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:31:26.214 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:31:26.214 -07 000000430 INF: FPGA: Recv ZSGSRD 29217
17-03-18 03:31:26.224 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:31:26.224 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:31:26.224 -07 000000455 INF: FPGA: Recv ZSGSRD 29210
17-03-18 03:31:26.234 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:31:26.234 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:31:26.234 -07 000000629 INF: FPGA: Recv ZSGSRD 29214
17-03-18 03:31:26.244 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:31:26.244 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:31:26.244 -07 000000629 INF: FPGA: Recv ZSGSRD 29214
17-03-18 03:31:26.254 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 03:31:26.254 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:31:26.254 -07 000000455 INF: FPGA: Recv ZSGSRD 29210
17-03-18 03:31:26.264 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:31:26.264 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:31:26.264 -07 000000629 INF: FPGA: Recv ZSGSRD 29208
17-03-18 03:31:26.274 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:31:26.274 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:31:26.274 -07 000000430 INF: FPGA: Recv ZPIEZORD 24717
17-03-18 03:31:26.284 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:31:26.284 -07 000000610 INF: Z Motor: Piezo is near 32.8 V (nominally 0 to 100 V), expect near 42.7 V, since DAC is at 4.266 V. Piezo Error = -9.9 V.
17-03-18 03:31:26.284 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.0 um, Read 10 ADC samples: Avg = 29212 (-127.2 uncal um), Error = 0.8 uncal um, Median = 29212 (-127.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29208 (-127.2 uncal um), Max = 29217 (-127.2 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 03:31:26.284 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29212, posNoise = 5, negNoise = 4
17-03-18 03:31:26.284 -07 000000610 INF: Z Motor: After move to -0.127979, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:31:26.284 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-18 03:31:26.284 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:31:26.284 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:31:26.284 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 03:31:26.284 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:31:26.284 -07 000000455 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:31:26.284 -07 000000629 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 03:31:26.284 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 03:31:26.284 -07 000000430 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:31:26.284 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 03:31:26.284 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 03:31:26.284 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 03:31:26.284 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 03:31:26.294 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 03:31:26.294 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 03:31:26.294 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-18 03:31:26.294 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 03:31:26.304 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 03:31:26.304 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 03:31:26.304 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 03:31:26.304 -07 000000629 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 03:31:26.314 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 406 406 195 195 28134 150\n [Camera]
17-03-18 03:31:26.504 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 03:31:26.584 -07 000000455 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 03:31:26.584 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 112. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1642, R2=1712, Total=3354. Warn if over 250 bubbles per interval.
17-03-18 03:31:26.914 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 599
17-03-18 03:31:26.914 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 599
17-03-18 03:31:26.914 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:31:26.914 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:31:26.914 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-18 03:31:26.914 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 599
17-03-18 03:31:26.914 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 599
17-03-18 03:31:26.924 -07 000000629 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:31:27.034 -07 000000629 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:31:27.034 -07 000000629 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) start.
17-03-18 03:31:27.104 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28134 791
17-03-18 03:31:27.254 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning grn on 941
17-03-18 03:31:27.304 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 386 ms.
17-03-18 03:31:27.304 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-18 03:31:27.304 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:31:27.304 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:31:27.304 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-18 03:31:27.414 -07 000000629 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) end. Duration was 373 ms.
17-03-18 03:31:27.414 -07 000000629 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 373 ms.
17-03-18 03:31:27.414 -07 000000629 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:31:27.414 -07 000000629 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:31:27.424 -07 000000629 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 501 ms.
17-03-18 03:31:27.454 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1136
17-03-18 03:31:27.454 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1136
17-03-18 03:31:27.454 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:31:27.454 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1136
17-03-18 03:31:27.454 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1136
17-03-18 03:31:27.464 -07 000000629 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:31:27.464 -07 000000629 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:31:27.464 -07 000000629 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 03:31:27.464 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:31:27.464 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 03:31:27.644 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP 1328
17-03-18 03:31:27.644 -07 000000626 INF: FPGA: Recv CAMDBLSNAP
17-03-18 03:31:27.644 -07 000000610 INF: FPGA: 'CAMDBLSNAP 406 406 195 195 28134 150' command took 2 ms to send, 1325 ms to get response, and 1335 ms overall
17-03-18 03:31:27.644 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 03:31:27.644 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 18 at Y-position 73.17626953125, Z-Position -0.127987437096256. ------
17-03-18 03:31:27.654 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 03:31:27.654 -07 000000430 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.0226 mm, moving Z to -0.13433 mm
17-03-18 03:31:27.654 -07 000000430 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 03:31:27.834 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 375 ms.
17-03-18 03:31:27.834 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 375 ms.
17-03-18 03:31:27.834 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:31:27.844 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:31:27.844 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-18 03:31:27.844 -07 000000629 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 380 ms.
17-03-18 03:31:27.844 -07 000000629 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-18 03:31:27.844 -07 000000629 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:31:27.844 -07 000000629 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 03:31:27.854 -07 000000629 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-18 03:31:27.854 -07 000000455 INF: Y Motor: Entering MoveAbsStepped (target = 118436 steps, sync = True, waitForSettling = True)
17-03-18 03:31:27.854 -07 000000455 INF: Y Motor: Moving to 74.0226 mm, started at 73.1763 mm, delta = 0.8463 mm
17-03-18 03:31:27.854 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:31:27.864 -07 000000629 INF: FPGA: Recv FOCMRRCUR 
17-03-18 03:31:27.864 -07 000000629 INF: FPGA: Recv YRDPOS 149865
17-03-18 03:31:27.864 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 201 ms to get response, and 210 ms overall
17-03-18 03:31:27.864 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 7 ms overall
17-03-18 03:31:27.864 -07 000000455 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:31:27.864 -07 000000626 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 03:31:27.864 -07 000000455 INF: Y Motor: Last commanded position = 73.1926 mm (117108.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 03:31:27.864 -07 000000455 INF: Y Motor: Moving 1354 steps-33
17-03-18 03:31:27.864 -07 000000629 INF: Z Motor: Entering MoveAbsStepped (DAC = 29345, sync = True, waitForSettling = False)
17-03-18 03:31:27.864 -07 000000629 INF: Z Motor: Moving to -0.134333 mm, started at -0.127987 mm, distance = -6.35 um
17-03-18 03:31:27.874 -07 000000629 INF: FPGA: Xmit ZDACW 29345\n [Z Motor]
17-03-18 03:31:27.884 -07 000000455 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 03:31:28.824 -07 000000606 INF: FPGA: Recv ZDACW
17-03-18 03:31:28.824 -07 000000606 INF: FPGA: Recv FOCMRRFOC
17-03-18 03:31:28.824 -07 000000606 INF: FPGA: Recv YMVTILE
17-03-18 03:31:28.824 -07 000000455 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 930 ms to get response, and 958 ms overall
17-03-18 03:31:28.824 -07 000000629 INF: FPGA: 'ZDACW 29345' command took 0 ms to send, 940 ms to get response, and 957 ms overall
17-03-18 03:31:28.824 -07 000000629 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:31:28.824 -07 000000626 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 950 ms to get response, and 958 ms overall
17-03-18 03:31:28.824 -07 000000606 INF: FPGA: Recv ZDACR 29345
17-03-18 03:31:28.834 -07 000000629 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 03:31:28.834 -07 000000629 INF: Z Motor: MoveAbsStepped took 967 ms (did NOT wait for settling yet))
17-03-18 03:31:28.864 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:31:28.864 -07 000000444 INF: FPGA: Recv YRDPOS 151569
17-03-18 03:31:28.874 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 03:31:28.874 -07 000000455 INF: Y Motor: Encoder = 151569 = motor step 118413.3 = 74.0083 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:31:28.874 -07 000000455 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-18 03:31:28.874 -07 000000455 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 958 ms, distance = 0.846 mm, average velocity = 0.883 mm/sec
17-03-18 03:31:29.134 -07 000000444 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 113, FrontChillerTemperature: 3.996267,
17-03-18 03:31:29.824 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:31:29.824 -07 000000626 INF: FPGA: Recv YRDPOS 151569
17-03-18 03:31:29.834 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:31:29.834 -07 000000455 INF: Y Motor: Encoder = 151569 = motor step 118413.3 = 74.0083 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:31:29.854 -07 000000455 INF: Y Motor: After move to 74.022606, error = -0.014305, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 03:31:29.854 -07 000000455 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 03:31:29.854 -07 000000455 INF: Y Motor: Moved to 74.0083 after 1999 ms (table move)
17-03-18 03:31:29.854 -07 000000430 INF: Z Motor: EndOfMoveAbsStepped: target = -0.134333 mm (DAC = 29345)
17-03-18 03:31:29.854 -07 000000430 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:31:29.864 -07 000000591 INF: FPGA: Recv ZSGSRD 30198
17-03-18 03:31:29.864 -07 000000430 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 03:31:29.864 -07 000000430 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:31:29.864 -07 000000629 INF: FPGA: Recv ZSGSRD 30203
17-03-18 03:31:29.874 -07 000000430 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:31:29.874 -07 000000430 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:31:29.874 -07 000000591 INF: FPGA: Recv ZSGSRD 30204
17-03-18 03:31:29.884 -07 000000430 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:31:29.884 -07 000000430 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:31:29.884 -07 000000606 INF: FPGA: Recv ZSGSRD 30203
17-03-18 03:31:29.894 -07 000000430 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:31:29.894 -07 000000430 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:31:29.894 -07 000000591 INF: FPGA: Recv ZSGSRD 30201
17-03-18 03:31:29.904 -07 000000430 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:31:29.904 -07 000000430 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:31:29.904 -07 000000626 INF: FPGA: Recv ZSGSRD 30206
17-03-18 03:31:29.914 -07 000000430 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:31:29.914 -07 000000430 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:31:29.914 -07 000000455 INF: FPGA: Recv ZSGSRD 30201
17-03-18 03:31:29.924 -07 000000430 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:31:29.924 -07 000000430 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:31:29.924 -07 000000626 INF: FPGA: Recv ZSGSRD 30199
17-03-18 03:31:29.934 -07 000000430 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:31:29.934 -07 000000430 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:31:29.934 -07 000000455 INF: FPGA: Recv ZSGSRD 30200
17-03-18 03:31:29.944 -07 000000430 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:31:29.944 -07 000000430 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:31:29.944 -07 000000626 INF: FPGA: Recv ZSGSRD 30198
17-03-18 03:31:29.954 -07 000000430 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:31:29.954 -07 000000430 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:31:29.954 -07 000000462 INF: FPGA: Recv ZPIEZORD 26005
17-03-18 03:31:29.964 -07 000000430 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:31:29.964 -07 000000430 INF: Z Motor: Piezo is near 35.6 V (nominally 0 to 100 V), expect near 44.8 V, since DAC is at 4.478 V. Piezo Error = -9.2 V.
17-03-18 03:31:29.964 -07 000000430 INF: Z Motor: ReadAdcAverage: Commanded Z = -134.3 um, Read 10 ADC samples: Avg = 30201 (-133.6 uncal um), Error = 0.8 uncal um, Median = 30201 (-133.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 30198 (-133.5 uncal um), Max = 30206 (-133.6 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 03:31:29.964 -07 000000430 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30201, posNoise = 5, negNoise = 3
17-03-18 03:31:29.964 -07 000000430 INF: Z Motor: After move to -0.134333, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:31:29.964 -07 000000430 INF: Z Motor: Settle wait time = 1993 ms, measure time = 104 ms (allowed 150 ms), total time = 2097 ms
17-03-18 03:31:29.964 -07 000000430 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-18 03:31:30.014 -07 000000430 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2359 ms
17-03-18 03:31:30.014 -07 000000430 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 03:31:30.014 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:31:30.014 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:31:30.014 -07 000000629 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:31:30.014 -07 000000591 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:31:30.014 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 03:31:30.014 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:31:30.014 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 03:31:30.014 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 03:31:30.024 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 03:31:30.024 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 03:31:30.024 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 03:31:30.024 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-18 03:31:30.034 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 03:31:30.074 -07 000000430 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 03:31:30.374 -07 000000444 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 03:31:30.374 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 03:31:30.374 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 03:31:30.374 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1424593000, 0x0, 559484976) start.
17-03-18 03:31:30.414 -07 000000606 INF: FPGA: Recv @CAMSNAP 380
17-03-18 03:31:30.414 -07 000000591 INF: FPGA: Recv CAMSNAP
17-03-18 03:31:30.414 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 03:31:30.494 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1424593000, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 03:31:30.494 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:31:30.494 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 03:31:30.494 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 03:31:30.514 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 03:31:30.514 -07 000000430 INF: Autofocus start
17-03-18 03:31:30.514 -07 000000430 INF: MeasureProfile start
17-03-18 03:31:30.514 -07 000000629 INF: FPGA: Recv FOCMRRCUR 
17-03-18 03:31:30.524 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 03:31:30.524 -07 000000424 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 03:31:30.524 -07 000000430 INF: MeasureProfile done
17-03-18 03:31:30.524 -07 000000430 INF: X=-32  Z correction [um]=-0.1591732
17-03-18 03:31:30.524 -07 000000430 INF: Autofocus finished
17-03-18 03:31:30.724 -07 000000455 INF: FPGA: Recv FOCMRRIMG
17-03-18 03:31:30.724 -07 000000424 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 03:31:30.724 -07 000000610 INF: ------------ Scan Snapping tile 18 at Y-position 74.00830078125, Z-position -0.134340982904458. ----------
17-03-18 03:31:30.724 -07 000000610 INF: Cycle	113	Tile	18	Exposure Settings		A	406	G	195	T	195	C	406
17-03-18 03:31:30.734 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27823, sync = True, waitForSettling = True)
17-03-18 03:31:30.734 -07 000000610 INF: Z Motor: Moving to -0.127366 mm, started at -0.134341 mm, distance = 6.98 um
17-03-18 03:31:30.734 -07 000000610 INF: FPGA: Xmit ZDACW 27823\n [Z Motor]
17-03-18 03:31:30.734 -07 000000591 INF: FPGA: Recv ZDACW
17-03-18 03:31:30.744 -07 000000610 INF: FPGA: 'ZDACW 27823' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 03:31:30.744 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:31:30.744 -07 000000424 INF: FPGA: Recv ZDACR 27823
17-03-18 03:31:30.754 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:31:30.754 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 03:31:30.904 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:31:30.904 -07 000000444 INF: FPGA: Recv ZSGSRD 29118
17-03-18 03:31:30.914 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:31:30.914 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:31:30.914 -07 000000629 INF: FPGA: Recv ZSGSRD 29115
17-03-18 03:31:30.924 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:31:30.924 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:31:30.924 -07 000000444 INF: FPGA: Recv ZSGSRD 29116
17-03-18 03:31:30.934 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:31:30.934 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:31:30.934 -07 000000606 INF: FPGA: Recv ZSGSRD 29114
17-03-18 03:31:30.944 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:31:30.944 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:31:30.944 -07 000000462 INF: FPGA: Recv ZSGSRD 29115
17-03-18 03:31:30.954 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:31:30.954 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:31:30.954 -07 000000606 INF: FPGA: Recv ZSGSRD 29111
17-03-18 03:31:30.964 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:31:30.964 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:31:30.964 -07 000000462 INF: FPGA: Recv ZSGSRD 29124
17-03-18 03:31:30.974 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:31:30.974 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:31:30.974 -07 000000424 INF: FPGA: Recv ZSGSRD 29123
17-03-18 03:31:30.984 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:31:30.984 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:31:30.984 -07 000000626 INF: FPGA: Recv ZSGSRD 29114
17-03-18 03:31:30.994 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:31:30.994 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:31:30.994 -07 000000629 INF: FPGA: Recv ZSGSRD 29113
17-03-18 03:31:31.004 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:31:31.004 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:31:31.004 -07 000000629 INF: FPGA: Recv ZPIEZORD 24590
17-03-18 03:31:31.014 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:31:31.014 -07 000000610 INF: Z Motor: Piezo is near 32.5 V (nominally 0 to 100 V), expect near 42.5 V, since DAC is at 4.246 V. Piezo Error = -9.9 V.
17-03-18 03:31:31.014 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -127.4 um, Read 10 ADC samples: Avg = 29116 (-126.6 uncal um), Error = 0.8 uncal um, Median = 29115 (-126.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 29111 (-126.6 uncal um), Max = 29124 (-126.6 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 03:31:31.014 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29116, posNoise = 8, negNoise = 5
17-03-18 03:31:31.014 -07 000000610 INF: Z Motor: After move to -0.127366, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:31:31.014 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 03:31:31.014 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:31:31.014 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:31:31.014 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:31:31.014 -07 000000444 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 03:31:31.014 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:31:31.014 -07 000000629 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:31:31.014 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 03:31:31.014 -07 000000444 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 03:31:31.014 -07 000000606 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 03:31:31.014 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 03:31:31.024 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 03:31:31.024 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 03:31:31.024 -07 000000444 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 03:31:31.024 -07 000000444 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 03:31:31.024 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 03:31:31.024 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 03:31:31.034 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 03:31:31.034 -07 000000606 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 03:31:31.034 -07 000000444 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-18 03:31:31.034 -07 000000444 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 03:31:31.034 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 406 406 195 195 28000 150\n [Camera]
17-03-18 03:31:31.234 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 03:31:31.584 -07 000000629 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 03:31:31.584 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 112. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1642, R2=1712, Total=3354. Warn if over 250 bubbles per interval.
17-03-18 03:31:31.644 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 598
17-03-18 03:31:31.644 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 598
17-03-18 03:31:31.644 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:31:31.644 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:31:31.644 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-18 03:31:31.644 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 598
17-03-18 03:31:31.644 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 598
17-03-18 03:31:31.644 -07 000000629 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:31:31.644 -07 000000629 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:31:31.644 -07 000000629 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) start.
17-03-18 03:31:31.834 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28000 791
17-03-18 03:31:31.984 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP turning grn on 941
17-03-18 03:31:32.034 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 393 ms.
17-03-18 03:31:32.034 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-18 03:31:32.034 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:31:32.034 -07 000000629 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) end. Duration was 391 ms.
17-03-18 03:31:32.034 -07 000000629 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-18 03:31:32.034 -07 000000629 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:31:32.044 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 03:31:32.044 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 03:31:32.044 -07 000000629 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 03:31:32.044 -07 000000629 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-18 03:31:32.174 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1136
17-03-18 03:31:32.174 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1136
17-03-18 03:31:32.184 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:31:32.294 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1136
17-03-18 03:31:32.294 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1136
17-03-18 03:31:32.294 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:31:32.294 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:31:32.294 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 03:31:32.294 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:31:32.294 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 03:31:32.374 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP 1328
17-03-18 03:31:32.374 -07 000000606 INF: FPGA: Recv CAMDBLSNAP
17-03-18 03:31:32.374 -07 000000610 INF: FPGA: 'CAMDBLSNAP 406 406 195 195 28000 150' command took 2 ms to send, 1331 ms to get response, and 1335 ms overall
17-03-18 03:31:32.374 -07 000000610 INF: Skipping AutoFocus in Tile 19: adopting Best-Z from the cache: -0.127374
17-03-18 03:31:32.374 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.8526 mm, moving Z to -0.12737 mm
17-03-18 03:31:32.374 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 03:31:32.374 -07 000000606 INF: Y Motor: Entering MoveAbsStepped (target = 119764 steps, sync = True, waitForSettling = True)
17-03-18 03:31:32.374 -07 000000606 INF: Y Motor: Moving to 74.8526 mm, started at 74.0083 mm, delta = 0.8443 mm
17-03-18 03:31:32.374 -07 000000629 INF: Z Motor: Entering MoveAbsStepped (DAC = 27825, sync = True, waitForSettling = False)
17-03-18 03:31:32.374 -07 000000606 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:31:32.374 -07 000000629 INF: Z Motor: Moving to -0.127375 mm, started at -0.127371 mm, distance = 0.00 um
17-03-18 03:31:32.384 -07 000000629 INF: FPGA: Xmit ZDACW 27825\n [Z Motor]
17-03-18 03:31:32.694 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 398 ms.
17-03-18 03:31:32.694 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 03:31:32.694 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:31:32.694 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 403 ms.
17-03-18 03:31:32.694 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 03:31:32.694 -07 000000444 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:31:32.704 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 03:31:32.704 -07 000000444 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 03:31:32.704 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 522 ms.
17-03-18 03:31:32.704 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-18 03:31:32.714 -07 000000444 INF: FPGA: Recv YRDPOS 151569
17-03-18 03:31:32.714 -07 000000444 INF: FPGA: Recv ZDACW
17-03-18 03:31:32.714 -07 000000606 INF: FPGA: 'YRDPOS' command took 0 ms to send, 332 ms to get response, and 336 ms overall
17-03-18 03:31:32.714 -07 000000606 INF: Y Motor: Encoder = 151569 = motor step 118413.3 = 74.0083 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:31:32.714 -07 000000606 INF: Y Motor: Last commanded position = 74.0226 mm (118436.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 03:31:32.714 -07 000000606 INF: Y Motor: Moving 1351 steps-29
17-03-18 03:31:32.714 -07 000000606 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 03:31:32.714 -07 000000629 INF: FPGA: 'ZDACW 27825' command took 0 ms to send, 322 ms to get response, and 336 ms overall
17-03-18 03:31:32.724 -07 000000629 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:31:32.724 -07 000000444 INF: FPGA: Recv ZDACR 27825
17-03-18 03:31:32.734 -07 000000629 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-18 03:31:32.734 -07 000000629 INF: Z Motor: MoveAbsStepped took 354 ms (did NOT wait for settling yet))
17-03-18 03:31:33.094 -07 000000629 INF: FPGA: Recv YMVTILE
17-03-18 03:31:33.094 -07 000000606 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 371 ms to get response, and 378 ms overall
17-03-18 03:31:33.124 -07 000000606 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:31:33.124 -07 000000629 INF: FPGA: Recv YRDPOS 153255
17-03-18 03:31:33.134 -07 000000606 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:31:33.134 -07 000000606 INF: Y Motor: Encoder = 153255 = motor step 119730.5 = 74.8315 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:31:33.134 -07 000000606 INF: Y Motor: Position error before settling (table move) = -43 encoder counts (-0.021 mm)
17-03-18 03:31:33.134 -07 000000606 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 378 ms, distance = 0.844 mm, average velocity = 2.234 mm/sec
17-03-18 03:31:34.084 -07 000000606 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:31:34.084 -07 000000444 INF: FPGA: Recv YRDPOS 153256
17-03-18 03:31:34.094 -07 000000606 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:31:34.094 -07 000000606 INF: Y Motor: Encoder = 153256 = motor step 119731.3 = 74.8320 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:31:34.114 -07 000000606 INF: Y Motor: After move to 74.852608, error = -0.020576, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 03:31:34.114 -07 000000606 INF: Y Motor: Position error after settling (table move) = -42 encoder counts (-0.021 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 03:31:34.114 -07 000000606 INF: Y Motor: Moved to 74.8320 after 1734 ms (table move)
17-03-18 03:31:34.114 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.127375 mm (DAC = 27825)
17-03-18 03:31:34.114 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:31:34.114 -07 000000579 INF: FPGA: Recv ZSGSRD 29120
17-03-18 03:31:34.124 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 03:31:34.124 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:31:34.124 -07 000000501 INF: FPGA: Recv ZSGSRD 29119
17-03-18 03:31:34.134 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:31:34.134 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:31:34.134 -07 000000579 INF: FPGA: Recv ZSGSRD 29119
17-03-18 03:31:34.144 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:31:34.144 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:31:34.144 -07 000000444 INF: FPGA: Recv ZSGSRD 29117
17-03-18 03:31:34.154 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:31:34.154 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:31:34.154 -07 000000606 INF: FPGA: Recv ZSGSRD 29114
17-03-18 03:31:34.164 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:31:34.164 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:31:34.164 -07 000000501 INF: FPGA: Recv ZSGSRD 29114
17-03-18 03:31:34.174 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:31:34.184 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:31:34.184 -07 000000606 INF: FPGA: Recv ZSGSRD 29119
17-03-18 03:31:34.194 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 03:31:34.194 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:31:34.194 -07 000000424 INF: FPGA: Recv ZSGSRD 29121
17-03-18 03:31:34.204 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:31:34.204 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:31:34.204 -07 000000561 INF: FPGA: Recv ZSGSRD 29119
17-03-18 03:31:34.214 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:31:34.214 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:31:34.214 -07 000000424 INF: FPGA: Recv ZSGSRD 29114
17-03-18 03:31:34.224 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:31:34.224 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:31:34.224 -07 000000561 INF: FPGA: Recv ZPIEZORD 24635
17-03-18 03:31:34.234 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:31:34.234 -07 000000610 INF: Z Motor: Piezo is near 32.6 V (nominally 0 to 100 V), expect near 42.5 V, since DAC is at 4.246 V. Piezo Error = -9.8 V.
17-03-18 03:31:34.234 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -127.4 um, Read 10 ADC samples: Avg = 29118 (-126.6 uncal um), Error = 0.8 uncal um, Median = 29119 (-126.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 29114 (-126.6 uncal um), Max = 29121 (-126.6 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 03:31:34.234 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29118, posNoise = 3, negNoise = 4
17-03-18 03:31:34.234 -07 000000610 INF: Z Motor: After move to -0.127375, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:31:34.234 -07 000000610 INF: Z Motor: Settle wait time = 1736 ms, measure time = 118 ms (allowed 150 ms), total time = 1854 ms
17-03-18 03:31:34.234 -07 000000610 INF: Z Motor: Waiting extra 32 ms after reading position to reach expected total of 150 ms
17-03-18 03:31:34.274 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1896 ms
17-03-18 03:31:34.274 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 03:31:34.274 -07 000000610 INF: ------------ Scan Snapping tile 19 at Y-position 74.83203125, Z-position -0.127383561154931. ----------
17-03-18 03:31:34.274 -07 000000610 INF: Cycle	113	Tile	19	Exposure Settings		A	406	G	195	T	195	C	406
17-03-18 03:31:34.274 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27648, sync = True, waitForSettling = True)
17-03-18 03:31:34.274 -07 000000610 INF: Z Motor: Moving to -0.126564 mm, started at -0.127384 mm, distance = 0.82 um
17-03-18 03:31:34.274 -07 000000610 INF: FPGA: Xmit ZDACW 27648\n [Z Motor]
17-03-18 03:31:34.274 -07 000000606 INF: FPGA: Recv ZDACW
17-03-18 03:31:34.284 -07 000000610 INF: FPGA: 'ZDACW 27648' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 03:31:34.284 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:31:34.284 -07 000000444 INF: FPGA: Recv ZDACR 27648
17-03-18 03:31:34.294 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:31:34.294 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 03:31:34.444 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:31:34.444 -07 000000606 INF: FPGA: Recv ZSGSRD 28992
17-03-18 03:31:34.454 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:31:34.454 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:31:34.454 -07 000000444 INF: FPGA: Recv ZSGSRD 28992
17-03-18 03:31:34.464 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:31:34.464 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:31:34.464 -07 000000606 INF: FPGA: Recv ZSGSRD 28987
17-03-18 03:31:34.474 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:31:34.474 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:31:34.474 -07 000000579 INF: FPGA: Recv ZSGSRD 28994
17-03-18 03:31:34.484 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:31:34.494 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:31:34.494 -07 000000629 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 113, FrontChillerTemperature: 4.03576,
17-03-18 03:31:34.494 -07 000000444 INF: FPGA: Recv ZSGSRD 28990
17-03-18 03:31:34.504 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 03:31:34.524 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:31:34.524 -07 000000606 INF: FPGA: Recv ZSGSRD 28995
17-03-18 03:31:34.534 -07 000000610 INF: FPGA: 'ZSGSRD' command took 2 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 03:31:34.534 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:31:34.534 -07 000000501 INF: FPGA: Recv ZSGSRD 28996
17-03-18 03:31:34.544 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:31:34.554 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:31:34.554 -07 000000561 INF: FPGA: Recv ZSGSRD 28988
17-03-18 03:31:34.564 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 03:31:34.564 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:31:34.564 -07 000000606 INF: FPGA: Recv ZSGSRD 28988
17-03-18 03:31:34.574 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:31:34.584 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:31:34.584 -07 000000629 INF: FPGA: Recv ZSGSRD 28997
17-03-18 03:31:34.594 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 03:31:34.604 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:31:34.604 -07 000000561 INF: FPGA: Recv ZPIEZORD 24433
17-03-18 03:31:34.614 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 03:31:34.614 -07 000000610 INF: Z Motor: Piezo is near 32.2 V (nominally 0 to 100 V), expect near 42.2 V, since DAC is at 4.219 V. Piezo Error = -10.0 V.
17-03-18 03:31:34.614 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -126.6 um, Read 10 ADC samples: Avg = 28992 (-125.8 uncal um), Error = 0.8 uncal um, Median = 28992 (-125.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 28987 (-125.8 uncal um), Max = 28997 (-125.8 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 03:31:34.614 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 28992, posNoise = 5, negNoise = 5
17-03-18 03:31:34.614 -07 000000610 INF: Z Motor: After move to -0.126564, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:31:34.614 -07 000000610 INF: Z Motor: MoveAbsStepped took 336 ms)
17-03-18 03:31:34.614 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:31:34.614 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:31:34.614 -07 000000606 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:31:34.614 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:31:34.614 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 03:31:34.614 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:31:34.614 -07 000000444 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 03:31:34.614 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 03:31:34.614 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 03:31:34.614 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 03:31:34.614 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 03:31:34.614 -07 000000444 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 03:31:34.614 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 03:31:34.614 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 03:31:34.614 -07 000000444 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 03:31:34.614 -07 000000444 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 03:31:34.624 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 03:31:34.624 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 03:31:34.624 -07 000000444 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 03:31:34.624 -07 000000444 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 03:31:34.634 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 406 406 195 195 27825 150\n [Camera]
17-03-18 03:31:34.834 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 03:31:35.234 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 598
17-03-18 03:31:35.234 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 598
17-03-18 03:31:35.234 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:31:35.244 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 598
17-03-18 03:31:35.244 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 598
17-03-18 03:31:35.244 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:31:35.244 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:31:35.244 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 03:31:35.244 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:31:35.244 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 1458343128, 0x0, 391868352) start.
17-03-18 03:31:35.434 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 27825 791
17-03-18 03:31:35.584 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning grn on 941
17-03-18 03:31:35.634 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 1458343128, 0x0, 391868352) end. Duration was 392 ms.
17-03-18 03:31:35.634 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-18 03:31:35.634 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:31:35.634 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 393 ms.
17-03-18 03:31:35.634 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-18 03:31:35.634 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:31:35.644 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 03:31:35.644 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 03:31:35.644 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 03:31:35.644 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 405 ms.
17-03-18 03:31:35.774 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1136
17-03-18 03:31:35.774 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1136
17-03-18 03:31:35.774 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:31:35.774 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:31:35.774 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) start.
17-03-18 03:31:35.774 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1136
17-03-18 03:31:35.774 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1136
17-03-18 03:31:35.784 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:31:35.784 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:31:35.784 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) start.
17-03-18 03:31:35.964 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP 1329
17-03-18 03:31:35.964 -07 000000618 INF: FPGA: Recv CAMDBLSNAP
17-03-18 03:31:35.964 -07 000000610 INF: FPGA: 'CAMDBLSNAP 406 406 195 195 27825 150' command took 2 ms to send, 1328 ms to get response, and 1335 ms overall
17-03-18 03:31:36.174 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) end. Duration was 393 ms.
17-03-18 03:31:36.174 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-18 03:31:36.174 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:31:36.174 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) end. Duration was 390 ms.
17-03-18 03:31:36.174 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-18 03:31:36.174 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:31:36.174 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 03:31:36.174 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 03:31:36.174 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) start.
17-03-18 03:31:36.174 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 03:31:36.184 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-18 03:31:36.214 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) end. Duration was 42 ms.
17-03-18 03:31:36.214 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) start.
17-03-18 03:31:36.264 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) end. Duration was 42 ms.
17-03-18 03:31:36.284 -07 000000610 INF: Enabling Skipping AutoFocus in the next 0 cycles.
17-03-18 03:31:36.284 -07 000000610 INF: Imaging Cycle 113: ScanTilesCommand Cycle 113 time end. Duration was 148085 ms.
17-03-18 03:31:36.284 -07 000000610 INF: =================== Cycle #113 ===================
17-03-18 03:31:36.284 -07 000000610 INF: ===================  ===================
17-03-18 03:31:36.284 -07 000000606 INF: FPGA: Xmit EXLED1ADCR\n [GreenLED]
17-03-18 03:31:36.284 -07 000000561 INF: FPGA: Recv EXLED1ADCR 24
17-03-18 03:31:36.294 -07 000000606 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 03:31:36.294 -07 000000606 INF: GreenLED: Using Green data: Photodiode ADC 24 --> 0.0 mW (old method), or 1.7 mW (new method). Difference = 1.7 mW
17-03-18 03:31:36.294 -07 000000606 INF: Predictive Diagnostic Log Cycle Entry Metrics: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 113, FrontChillerTemperature: 4.03576, FrontChillerHeatSinkTemperature: 0.544565, AmbientTemperature: 18.6816, FlowCellCompartmentTemperature: 21.99255, FlowCellTargetTemperature: 22, FlowCellHeatSinkTemperature: 18.50475, GreenLEDSensorTemperature: 24.93591, PhotodiodePowerAdcGreen: 24, PhotodiodePowerMwGreen: 1.744678
17-03-18 03:31:36.384 -07 000000610 INF: Y-Drift Offset assigned 0.002126916.