17-03-18 03:40:41.084 -07 000000610 INF: =================== Cycle #116 ===================
17-03-18 03:40:41.084 -07 000000610 INF: Y Motor: Entering MoveAbsStepped (target = 120609 steps, sync = True, waitForSettling = True)
17-03-18 03:40:41.084 -07 000000610 INF: Y Motor: Moving to 75.3806 mm, started at 74.8320 mm, delta = 0.5485 mm
17-03-18 03:40:41.084 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:40:41.084 -07 000000579 INF: FPGA: Recv YRDPOS 153256
17-03-18 03:40:41.094 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 03:40:41.094 -07 000000610 INF: Y Motor: Encoder = 153256 = motor step 119731.3 = 74.8320 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:40:41.094 -07 000000610 INF: Y Motor: Last commanded position = 74.8526 mm (119764.2 steps), delta from last commanded position = 0.5280 mm (844.8 steps). UsingTableMove = False
17-03-18 03:40:41.094 -07 000000610 INF: Y Motor: Moving to 154379 encoder counts
17-03-18 03:40:41.094 -07 000000610 INF: FPGA: Xmit YMVTO 154379\n [Y Motor]
17-03-18 03:40:41.204 -07 000000438 INF: FPGA: Recv YMVTO 154378 878
17-03-18 03:40:41.204 -07 000000610 INF: FPGA: 'YMVTO 154379' command took 0 ms to send, 108 ms to get response, and 118 ms overall
17-03-18 03:40:41.204 -07 000000610 INF: Y Motor: Position error before settling = -1 encoder counts (0.000 mm)
17-03-18 03:40:41.204 -07 000000610 INF: Y Motor: To move from 74.832 to 75.381 (0.549 mm) should take 877 steps, but required 878 steps (0.549 mm). Slippage = 0.001 mm (0.00%).
17-03-18 03:40:41.204 -07 000000610 INF: Y Motor: FPGA move command 'YMVTO 154379' took 118 ms, distance = 0.549 mm, average velocity = 4.649 mm/sec
17-03-18 03:40:41.594 -07 000000438 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 03:40:41.594 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 115. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1656, R2=1727, Total=3383. Warn if over 250 bubbles per interval.
17-03-18 03:40:43.714 -07 000000461 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 116, FrontChillerTemperature: 4.007176,
17-03-18 03:40:44.204 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:40:44.204 -07 000000606 INF: FPGA: Recv YRDPOS 154387
17-03-18 03:40:44.214 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:40:44.214 -07 000000610 INF: Y Motor: Encoder = 154387 = motor step 120614.8 = 75.3843 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:40:44.234 -07 000000610 INF: Y Motor: After move to 75.380580, error = 0.003697, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 03:40:44.234 -07 000000610 INF: Y Motor: Position error after settling = 8 encoder counts (0.004 mm), Delta during settling = 9 counts (0.004 mm)
17-03-18 03:40:44.234 -07 000000610 INF: Y Motor: Moved to 75.3843 after 3144 ms
17-03-18 03:40:44.234 -07 000000610 INF: =================== Cycle #116, Flow Cell Temp 60° ===================
17-03-18 03:40:44.234 -07 000000610 INF: =================== Cycle #116, Flow Cell Temp 60°, FC temperature to 60° ===================
17-03-18 03:40:44.234 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 60000000\n [FlowCellTempControl]
17-03-18 03:40:44.244 -07 000000461 INF: FPGA: Recv TEC2TEMP 
17-03-18 03:40:44.244 -07 000000610 INF: FPGA: 'TEC2TEMP 0 60000000' command took 1 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 03:40:44.244 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-18 03:40:44.244 -07 000000462 INF: FPGA: Recv TEC2EN 
17-03-18 03:40:44.254 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 03:40:44.254 -07 000000610 INF: =================== Cycle #116, Flow Cell Temp 60° ===================
17-03-18 03:40:44.254 -07 000000610 INF: =================== Cycle #116 ===================
17-03-18 03:40:44.254 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-18 03:40:44.254 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 03:40:44.284 -07 000000610 INF: ReagentValve: Recv 18\r
17-03-18 03:40:44.284 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 24 to 3. Moving 3 positions.
17-03-18 03:40:44.284 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-18 03:40:44.584 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 03:40:44.604 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-18 03:40:44.604 -07 000000610 INF: ReagentValve: Move+ from 24 to 3 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-18 03:40:44.654 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 03:40:44.674 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 03:40:44.674 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 03:40:44.774 -07 000000610 INF: =================== Cycle #116, Pumping Reagent PR2 (3) ===================
17-03-18 03:40:44.774 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1
17-03-18 03:40:44.774 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 03:40:44.804 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-18 03:40:44.804 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-18 03:40:44.804 -07 000000610 INF: =================== Cycle #116, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 03:40:44.934 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r
17-03-18 03:40:44.974 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 03:40:46.594 -07 000000438 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 03:40:46.594 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 115. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1656, R2=1727, Total=3383. Warn if over 250 bubbles per interval.
17-03-18 03:40:48.104 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 03:40:48.134 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 03:40:48.554 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 03:40:48.584 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 03:40:49.004 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 03:40:49.034 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 03:40:49.034 -07 000000610 INF: LanePump: Waited 4059 ms for pump motion to complete
17-03-18 03:40:49.034 -07 000000610 INF: =================== Cycle #116, Pumping Reagent PR2 (3) ===================
17-03-18 03:40:49.084 -07 000000501 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 116, FrontChillerTemperature: 3.989471,
17-03-18 03:40:49.164 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 03:40:49.194 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 03:40:49.194 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 03:40:49.324 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 03:40:49.354 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 03:40:49.354 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 03:40:49.354 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 03:40:49.484 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 03:40:49.514 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 03:40:49.944 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 03:40:49.974 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 03:40:49.974 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 03:40:49.974 -07 000000610 INF: =================== Cycle #116 ===================
17-03-18 03:40:51.194 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-18 03:40:51.194 -07 000000610 INF: ReagentValve: Go to position 4 - PumpToFlowcell start
17-03-18 03:40:51.194 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 03:40:51.214 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 03:40:51.214 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 3 to 4. Moving 1 positions.
17-03-18 03:40:51.214 -07 000000610 INF: ReagentValve: Xmit +04\r
17-03-18 03:40:51.354 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 03:40:51.374 -07 000000610 INF: ReagentValve: Recv 00CD\r
17-03-18 03:40:51.374 -07 000000610 INF: ReagentValve: Move+ from 3 to 4 took 205 steps, expected 204. Error = 1 steps (0.5%)
17-03-18 03:40:51.424 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 03:40:51.444 -07 000000610 INF: ReagentValve: Recv 04\r
17-03-18 03:40:51.444 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 03:40:51.544 -07 000000610 INF: =================== Cycle #116, Pumping Reagent CMS (4) ===================
17-03-18 03:40:51.544 -07 000000610 INF: LanePump: Pumping from 4, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-18 03:40:51.544 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 03:40:51.574 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 03:40:51.574 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 03:40:51.574 -07 000000610 INF: =================== Cycle #116, Pumping Reagent CMS (4), Aspirating port InputPort ===================
17-03-18 03:40:51.594 -07 000000585 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 1
17-03-18 03:40:51.594 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 115. Bubbles during last 5000 ms interval: R1=1, R2=1, Total=2. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1657, R2=1728, Total=3385. Warn if over 250 bubbles per interval.
17-03-18 03:40:51.704 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-18 03:40:51.744 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 03:40:53.184 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 03:40:53.214 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 03:40:53.634 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 03:40:53.664 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 03:40:53.664 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-18 03:40:53.664 -07 000000610 INF: =================== Cycle #116, Pumping Reagent CMS (4) ===================
17-03-18 03:40:53.794 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 03:40:53.824 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 03:40:53.824 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 03:40:53.954 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 03:40:53.984 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 03:40:53.984 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 03:40:53.984 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 03:40:54.114 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 03:40:54.144 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 03:40:54.454 -07 000000444 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 116, FrontChillerTemperature: 3.983999,
17-03-18 03:40:54.574 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 03:40:54.604 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 03:40:54.604 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 03:40:54.604 -07 000000610 INF: =================== Cycle #116 ===================
17-03-18 03:40:55.824 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-18 03:40:55.824 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-18 03:40:55.824 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 03:40:55.844 -07 000000610 INF: ReagentValve: Recv 04\r
17-03-18 03:40:55.844 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 4 to 3. Moving 1 positions.
17-03-18 03:40:55.844 -07 000000610 INF: ReagentValve: Xmit -03\r
17-03-18 03:40:55.994 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 03:40:56.014 -07 000000610 INF: ReagentValve: Recv 00E1\r
17-03-18 03:40:56.014 -07 000000610 INF: ReagentValve: Move- from 4 to 3 took 225 steps, expected 204. Error = 21 steps (10.3%)
17-03-18 03:40:56.064 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 03:40:56.084 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 03:40:56.084 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 03:40:56.184 -07 000000610 INF: =================== Cycle #116, Pumping Reagent PR2 (3) ===================
17-03-18 03:40:56.184 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-18 03:40:56.184 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 03:40:56.214 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 03:40:56.214 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 03:40:56.214 -07 000000610 INF: =================== Cycle #116, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 03:40:56.344 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-18 03:40:56.384 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 03:40:56.594 -07 000000611 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 2
17-03-18 03:40:56.594 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 115. Bubbles during last 5000 ms interval: R1=2, R2=0, Total=2. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1659, R2=1728, Total=3387. Warn if over 250 bubbles per interval.
17-03-18 03:40:57.254 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 03:40:57.284 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 03:40:57.284 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-18 03:40:57.284 -07 000000610 INF: =================== Cycle #116, Pumping Reagent PR2 (3) ===================
17-03-18 03:40:57.414 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 03:40:57.444 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 03:40:57.444 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-18 03:40:57.574 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 03:40:57.604 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 03:40:57.604 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-18 03:40:57.604 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 03:40:57.734 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 03:40:57.764 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 03:40:58.194 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 03:40:58.224 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 03:40:58.224 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 03:40:58.224 -07 000000610 INF: =================== Cycle #116 ===================
17-03-18 03:40:58.224 -07 000000606 INF: WaitCommand(10000) start
17-03-18 03:40:58.224 -07 000000585 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 03:40:58.224 -07 000000585 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-18 03:40:59.444 -07 000000585 INF: AsyncDelayTimer waited 1216ms
17-03-18 03:40:59.444 -07 000000585 INF: LanePump: Xmit /1?\r
17-03-18 03:40:59.474 -07 000000585 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 03:40:59.474 -07 000000585 INF: LanePump: Current Position of Pump is: 1110
17-03-18 03:40:59.604 -07 000000585 INF: LanePump: Xmit /1V1500OA0R\r
17-03-18 03:40:59.644 -07 000000585 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 03:40:59.824 -07 000000455 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 116, FrontChillerTemperature: 4.009895,
17-03-18 03:41:01.174 -07 000000585 INF: LanePump: Xmit /1Q\r
17-03-18 03:41:01.204 -07 000000585 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 03:41:01.594 -07 000000591 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 0
17-03-18 03:41:01.594 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 115. Bubbles during last 5000 ms interval: R1=0, R2=1, Total=1. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1659, R2=1729, Total=3388. Warn if over 250 bubbles per interval.
17-03-18 03:41:01.624 -07 000000585 INF: LanePump: Xmit /1Q\r
17-03-18 03:41:01.654 -07 000000585 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 03:41:01.654 -07 000000585 INF: LanePump: Waited 2009 ms for pump motion to complete
17-03-18 03:41:01.654 -07 000000585 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 03:41:01.654 -07 000000585 INF: ===================  ===================
17-03-18 03:41:05.194 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 116, FrontChillerTemperature: 3.990831,
17-03-18 03:41:06.594 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 03:41:06.594 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 115. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1659, R2=1729, Total=3388. Warn if over 250 bubbles per interval.
17-03-18 03:41:08.234 -07 000000606 INF: WaitCommand(10000) end
17-03-18 03:41:08.234 -07 000000610 INF: =================== Cycle #116, Pumping Reagent PR2 (3) ===================
17-03-18 03:41:08.234 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 250 µL, calling command Pumping to Flow Cell #1
17-03-18 03:41:08.234 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 03:41:08.264 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-18 03:41:08.264 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-18 03:41:08.264 -07 000000610 INF: =================== Cycle #116, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 03:41:08.394 -07 000000610 INF: LanePump: Xmit /1V400IP1500R\r
17-03-18 03:41:08.434 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 03:41:10.564 -07 000000467 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 116, FrontChillerTemperature: 4.011254,
17-03-18 03:41:11.594 -07 000000455 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 03:41:11.594 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 115. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1659, R2=1729, Total=3388. Warn if over 250 bubbles per interval.
17-03-18 03:41:14.564 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 03:41:14.594 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 03:41:15.014 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 03:41:15.044 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 03:41:15.464 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 03:41:15.494 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 03:41:15.914 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 03:41:15.944 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 03:41:15.944 -07 000000461 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 116, FrontChillerTemperature: 4.005817,
17-03-18 03:41:16.364 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 03:41:16.394 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 03:41:16.394 -07 000000610 INF: LanePump: Waited 7959 ms for pump motion to complete
17-03-18 03:41:16.394 -07 000000610 INF: =================== Cycle #116, Pumping Reagent PR2 (3) ===================
17-03-18 03:41:16.524 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 03:41:16.554 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-18 03:41:16.554 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-18 03:41:16.594 -07 000000461 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 3 R1 2
17-03-18 03:41:16.594 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 115. Bubbles during last 5000 ms interval: R1=2, R2=3, Total=5. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1661, R2=1732, Total=3393. Warn if over 250 bubbles per interval.
17-03-18 03:41:16.684 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 03:41:16.714 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-18 03:41:16.714 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-18 03:41:16.714 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 03:41:16.844 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 03:41:16.874 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 03:41:17.304 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 03:41:17.334 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 03:41:17.334 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-18 03:41:17.334 -07 000000610 INF: =================== Cycle #116 ===================
17-03-18 03:41:18.554 -07 000000610 INF: AsyncDelayTimer waited 1217ms
17-03-18 03:41:18.554 -07 000000610 INF: ReagentValve: Go to position 1 - PumpToFlowcell start
17-03-18 03:41:18.554 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 03:41:18.574 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 03:41:18.574 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 1. Moving 2 positions.
17-03-18 03:41:18.574 -07 000000610 INF: ReagentValve: Xmit -01\r
17-03-18 03:41:18.784 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 03:41:18.804 -07 000000610 INF: ReagentValve: Recv 0198\r
17-03-18 03:41:18.804 -07 000000610 INF: ReagentValve: Move- from 3 to 1 took 408 steps, expected 408. Error = 0 steps (0.0%)
17-03-18 03:41:18.854 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 03:41:18.874 -07 000000610 INF: ReagentValve: Recv 01\r
17-03-18 03:41:18.874 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 03:41:18.974 -07 000000610 INF: =================== Cycle #116, Pumping Reagent IMT (1) ===================
17-03-18 03:41:18.974 -07 000000610 INF: LanePump: Pumping from 1, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-18 03:41:18.974 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 03:41:19.004 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-18 03:41:19.004 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-18 03:41:19.004 -07 000000610 INF: =================== Cycle #116, Pumping Reagent IMT (1), Aspirating port InputPort ===================
17-03-18 03:41:19.134 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-18 03:41:19.174 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 03:41:20.614 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 03:41:20.644 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 03:41:21.064 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 03:41:21.094 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 03:41:21.094 -07 000000610 INF: LanePump: Waited 1920 ms for pump motion to complete
17-03-18 03:41:21.094 -07 000000610 INF: =================== Cycle #116, Pumping Reagent IMT (1) ===================
17-03-18 03:41:21.224 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 03:41:21.254 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-18 03:41:21.254 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-18 03:41:21.314 -07 000000611 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 116, FrontChillerTemperature: 4.005817,
17-03-18 03:41:21.384 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 03:41:21.414 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-18 03:41:21.414 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-18 03:41:21.414 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 03:41:21.544 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 03:41:21.574 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 03:41:21.604 -07 000000444 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 03:41:21.604 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 115. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1661, R2=1732, Total=3393. Warn if over 250 bubbles per interval.
17-03-18 03:41:22.004 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 03:41:22.034 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 03:41:22.034 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 03:41:22.034 -07 000000610 INF: =================== Cycle #116 ===================
17-03-18 03:41:23.254 -07 000000610 INF: AsyncDelayTimer waited 1218ms
17-03-18 03:41:23.254 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-18 03:41:23.254 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 03:41:23.274 -07 000000610 INF: ReagentValve: Recv 01\r
17-03-18 03:41:23.274 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 1 to 3. Moving 2 positions.
17-03-18 03:41:23.274 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-18 03:41:23.504 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 03:41:23.524 -07 000000610 INF: ReagentValve: Recv 01AC\r
17-03-18 03:41:23.524 -07 000000610 INF: ReagentValve: Move+ from 1 to 3 took 428 steps, expected 408. Error = 20 steps (4.9%)
17-03-18 03:41:23.574 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 03:41:23.594 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 03:41:23.594 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 03:41:23.694 -07 000000610 INF: =================== Cycle #116, Pumping Reagent PR2 (3) ===================
17-03-18 03:41:23.694 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-18 03:41:23.694 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 03:41:23.724 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-18 03:41:23.724 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-18 03:41:23.724 -07 000000610 INF: =================== Cycle #116, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 03:41:23.854 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-18 03:41:23.894 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 03:41:24.764 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 03:41:24.794 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 03:41:24.794 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-18 03:41:24.794 -07 000000610 INF: =================== Cycle #116, Pumping Reagent PR2 (3) ===================
17-03-18 03:41:24.924 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 03:41:24.954 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-18 03:41:24.954 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-18 03:41:25.084 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 03:41:25.114 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-18 03:41:25.114 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-18 03:41:25.114 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 03:41:25.244 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 03:41:25.274 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 03:41:25.704 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 03:41:25.734 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 03:41:25.734 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-18 03:41:25.734 -07 000000610 INF: =================== Cycle #116 ===================
17-03-18 03:41:25.734 -07 000000610 INF: =================== Cycle #116, Flow Cell Temp 65° ===================
17-03-18 03:41:25.734 -07 000000610 INF: =================== Cycle #116, Flow Cell Temp 65°, FC temperature to 65° ===================
17-03-18 03:41:25.734 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 65000000\n [FlowCellTempControl]
17-03-18 03:41:25.734 -07 000000467 INF: FPGA: Recv TEC2TEMP 
17-03-18 03:41:25.744 -07 000000610 INF: FPGA: 'TEC2TEMP 0 65000000' command took 1 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 03:41:25.744 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-18 03:41:25.744 -07 000000611 INF: FPGA: Recv TEC2EN 
17-03-18 03:41:25.754 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:41:25.754 -07 000000610 INF: =================== Cycle #116, Flow Cell Temp 65° ===================
17-03-18 03:41:25.754 -07 000000610 INF: =================== Cycle #116 ===================
17-03-18 03:41:25.754 -07 000000610 INF: WaitCommand(30000) start
17-03-18 03:41:26.604 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 03:41:26.604 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 115. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1661, R2=1732, Total=3393. Warn if over 250 bubbles per interval.
17-03-18 03:41:26.684 -07 000000461 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 116, FrontChillerTemperature: 3.994908,
17-03-18 03:41:31.594 -07 000000444 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 03:41:31.594 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 115. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1661, R2=1732, Total=3393. Warn if over 250 bubbles per interval.
17-03-18 03:41:32.584 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 116, FrontChillerTemperature: 4.033041,
17-03-18 03:41:36.594 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 03:41:36.604 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 115. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1661, R2=1732, Total=3393. Warn if over 250 bubbles per interval.
17-03-18 03:41:37.944 -07 000000444 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 116, FrontChillerTemperature: 4.015368,
17-03-18 03:41:41.604 -07 000000467 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 03:41:41.604 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 115. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1661, R2=1732, Total=3393. Warn if over 250 bubbles per interval.
17-03-18 03:41:43.324 -07 000000569 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 116, FrontChillerTemperature: 3.974486,
17-03-18 03:41:46.604 -07 000000467 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 03:41:46.604 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 115. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1661, R2=1732, Total=3393. Warn if over 250 bubbles per interval.
17-03-18 03:41:48.684 -07 000000467 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 116, FrontChillerTemperature: 3.973092,
17-03-18 03:41:51.594 -07 000000444 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 03:41:51.594 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 115. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1661, R2=1732, Total=3393. Warn if over 250 bubbles per interval.
17-03-18 03:41:54.054 -07 000000462 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 116, FrontChillerTemperature: 3.994908,
17-03-18 03:41:55.764 -07 000000610 INF: WaitCommand(30000) end
17-03-18 03:41:55.764 -07 000000610 INF: =================== Cycle #116, Pumping Reagent PR2 (3) ===================
17-03-18 03:41:55.764 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 5 µL, calling command Pumping to Flow Cell #1
17-03-18 03:41:55.864 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 03:41:55.894 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-18 03:41:55.894 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-18 03:41:55.894 -07 000000610 INF: =================== Cycle #116, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 03:41:56.024 -07 000000610 INF: LanePump: Xmit /1V400IP30R\r
17-03-18 03:41:56.064 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 03:41:56.594 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 03:41:56.594 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 115. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1661, R2=1732, Total=3393. Warn if over 250 bubbles per interval.
17-03-18 03:41:56.604 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 03:41:56.634 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 03:41:56.634 -07 000000610 INF: LanePump: Waited 569 ms for pump motion to complete
17-03-18 03:41:56.634 -07 000000610 INF: =================== Cycle #116, Pumping Reagent PR2 (3) ===================
17-03-18 03:41:56.764 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 03:41:56.794 -07 000000610 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-18 03:41:56.794 -07 000000610 INF: LanePump: Current Position of Pump is: 1920
17-03-18 03:41:56.924 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 03:41:56.954 -07 000000610 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-18 03:41:56.954 -07 000000610 INF: LanePump: Current Position of Pump is: 1920
17-03-18 03:41:56.954 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 03:41:57.084 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 03:41:57.114 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 03:41:57.544 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 03:41:57.574 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 03:41:57.574 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 03:41:57.574 -07 000000610 INF: =================== Cycle #116 ===================
17-03-18 03:41:57.574 -07 000000467 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 03:41:57.574 -07 000000512 INF: WaitCommand(30000) start
17-03-18 03:41:57.574 -07 000000467 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-18 03:41:58.794 -07 000000467 INF: AsyncDelayTimer waited 1216ms
17-03-18 03:41:58.794 -07 000000467 INF: LanePump: Xmit /1?\r
17-03-18 03:41:58.824 -07 000000467 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-18 03:41:58.824 -07 000000467 INF: LanePump: Current Position of Pump is: 1920
17-03-18 03:41:58.954 -07 000000467 INF: LanePump: Xmit /1V1500OA0R\r
17-03-18 03:41:58.994 -07 000000467 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 03:41:59.424 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 116, FrontChillerTemperature: 3.989471,
17-03-18 03:42:01.334 -07 000000467 INF: LanePump: Xmit /1Q\r
17-03-18 03:42:01.364 -07 000000467 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 03:42:01.594 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 03:42:01.594 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 115. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1661, R2=1732, Total=3393. Warn if over 250 bubbles per interval.
17-03-18 03:42:01.784 -07 000000467 INF: LanePump: Xmit /1Q\r
17-03-18 03:42:01.814 -07 000000467 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 03:42:01.814 -07 000000467 INF: LanePump: Waited 2820 ms for pump motion to complete
17-03-18 03:42:01.814 -07 000000467 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 03:42:01.814 -07 000000467 INF: ===================  ===================
17-03-18 03:42:04.794 -07 000000455 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 116, FrontChillerTemperature: 4.011254,
17-03-18 03:42:06.594 -07 000000611 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 03:42:06.594 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 115. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1661, R2=1732, Total=3393. Warn if over 250 bubbles per interval.
17-03-18 03:42:10.164 -07 000000437 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 116, FrontChillerTemperature: 4.053471,
17-03-18 03:42:11.594 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 03:42:11.594 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 115. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1661, R2=1732, Total=3393. Warn if over 250 bubbles per interval.
17-03-18 03:42:15.524 -07 000000629 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 116, FrontChillerTemperature: 3.983999,
17-03-18 03:42:16.594 -07 000000608 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 03:42:16.594 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 115. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1661, R2=1732, Total=3393. Warn if over 250 bubbles per interval.
17-03-18 03:42:20.884 -07 000000462 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 116, FrontChillerTemperature: 3.983999,
17-03-18 03:42:21.594 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 03:42:21.594 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 115. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1661, R2=1732, Total=3393. Warn if over 250 bubbles per interval.
17-03-18 03:42:26.244 -07 000000608 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 116, FrontChillerTemperature: 4.019446,
17-03-18 03:42:26.594 -07 000000581 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 03:42:26.604 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 115. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1661, R2=1732, Total=3393. Warn if over 250 bubbles per interval.
17-03-18 03:42:27.584 -07 000000512 INF: WaitCommand(30000) end
17-03-18 03:42:27.584 -07 000000610 INF: =================== Cycle #116, Flow Cell Temp 22° ===================
17-03-18 03:42:27.584 -07 000000610 INF: =================== Cycle #116, Flow Cell Temp 22°, FC temperature to 22° ===================
17-03-18 03:42:27.584 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 22000000\n [FlowCellTempControl]
17-03-18 03:42:27.584 -07 000000629 INF: FPGA: Recv TEC2TEMP 
17-03-18 03:42:27.594 -07 000000610 INF: FPGA: 'TEC2TEMP 0 22000000' command took 1 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 03:42:27.594 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-18 03:42:27.594 -07 000000629 INF: FPGA: Recv TEC2EN 
17-03-18 03:42:27.604 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:42:27.604 -07 000000610 INF: =================== Cycle #116, Flow Cell Temp 22° ===================
17-03-18 03:42:27.604 -07 000000610 INF: =================== Cycle #116 ===================
17-03-18 03:42:27.604 -07 000000610 INF: =================== Cycle #116, Pumping Reagent PR2 (3) ===================
17-03-18 03:42:27.604 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1
17-03-18 03:42:27.604 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 03:42:27.644 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-18 03:42:27.644 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-18 03:42:27.644 -07 000000610 INF: =================== Cycle #116, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 03:42:27.774 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r
17-03-18 03:42:27.814 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 03:42:30.944 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 03:42:30.974 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 03:42:31.394 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 03:42:31.424 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 03:42:31.594 -07 000000629 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 3 R1 3
17-03-18 03:42:31.604 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 115. Bubbles during last 5000 ms interval: R1=3, R2=3, Total=6. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1664, R2=1735, Total=3399. Warn if over 250 bubbles per interval.
17-03-18 03:42:31.604 -07 000000629 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 116, FrontChillerTemperature: 4.001704,
17-03-18 03:42:31.844 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 03:42:32.544 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 03:42:32.544 -07 000000610 INF: LanePump: Waited 4729 ms for pump motion to complete
17-03-18 03:42:32.544 -07 000000610 INF: =================== Cycle #116, Pumping Reagent PR2 (3) ===================
17-03-18 03:42:32.674 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 03:42:32.704 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 03:42:32.704 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 03:42:32.834 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 03:42:32.864 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 03:42:32.864 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 03:42:32.864 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 03:42:32.994 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 03:42:33.024 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 03:42:33.454 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 03:42:33.484 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 03:42:33.484 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 03:42:33.484 -07 000000610 INF: =================== Cycle #116 ===================
17-03-18 03:42:34.704 -07 000000610 INF: AsyncDelayTimer waited 1218ms
17-03-18 03:42:34.704 -07 000000610 INF: ReagentValve: Go to position 2 - PumpToFlowcell start
17-03-18 03:42:34.704 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 03:42:34.724 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 03:42:34.724 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 2. Moving 1 positions.
17-03-18 03:42:34.724 -07 000000610 INF: ReagentValve: Xmit -02\r
17-03-18 03:42:34.874 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 03:42:34.894 -07 000000610 INF: ReagentValve: Recv 00E3\r
17-03-18 03:42:34.894 -07 000000610 INF: ReagentValve: Move- from 3 to 2 took 227 steps, expected 204. Error = 23 steps (11.3%)
17-03-18 03:42:34.944 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 03:42:34.964 -07 000000610 INF: ReagentValve: Recv 02\r
17-03-18 03:42:34.964 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 03:42:35.064 -07 000000610 INF: =================== Cycle #116, Pumping Reagent USM (2) ===================
17-03-18 03:42:35.064 -07 000000610 INF: LanePump: Pumping from 2, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-18 03:42:35.064 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 03:42:35.094 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 03:42:35.094 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 03:42:35.094 -07 000000610 INF: =================== Cycle #116, Pumping Reagent USM (2), Aspirating port InputPort ===================
17-03-18 03:42:35.224 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-18 03:42:35.264 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 03:42:36.594 -07 000000479 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 0
17-03-18 03:42:36.604 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 115. Bubbles during last 5000 ms interval: R1=0, R2=1, Total=1. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1664, R2=1736, Total=3400. Warn if over 250 bubbles per interval.
17-03-18 03:42:36.704 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 03:42:36.734 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 03:42:37.154 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 03:42:37.184 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 03:42:37.184 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-18 03:42:37.184 -07 000000610 INF: =================== Cycle #116, Pumping Reagent USM (2) ===================
17-03-18 03:42:37.314 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 03:42:37.344 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 03:42:37.344 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 03:42:37.474 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 03:42:37.504 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 03:42:37.504 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 03:42:37.504 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 03:42:37.634 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 03:42:37.664 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 03:42:37.874 -07 000000474 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 116, FrontChillerTemperature: 4.018051,
17-03-18 03:42:38.094 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 03:42:38.124 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 03:42:38.124 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 03:42:38.124 -07 000000610 INF: =================== Cycle #116 ===================
17-03-18 03:42:39.344 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-18 03:42:39.344 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-18 03:42:39.344 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 03:42:39.364 -07 000000610 INF: ReagentValve: Recv 02\r
17-03-18 03:42:39.364 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 2 to 3. Moving 1 positions.
17-03-18 03:42:39.364 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-18 03:42:39.514 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 03:42:39.534 -07 000000610 INF: ReagentValve: Recv 00E3\r
17-03-18 03:42:39.534 -07 000000610 INF: ReagentValve: Move+ from 2 to 3 took 227 steps, expected 204. Error = 23 steps (11.3%)
17-03-18 03:42:39.584 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 03:42:39.604 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 03:42:39.604 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 03:42:39.704 -07 000000610 INF: =================== Cycle #116, Pumping Reagent PR2 (3) ===================
17-03-18 03:42:39.704 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-18 03:42:39.704 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 03:42:39.734 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 03:42:39.734 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 03:42:39.734 -07 000000610 INF: =================== Cycle #116, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 03:42:39.864 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-18 03:42:39.904 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 03:42:40.774 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 03:42:40.804 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 03:42:40.804 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-18 03:42:40.804 -07 000000610 INF: =================== Cycle #116, Pumping Reagent PR2 (3) ===================
17-03-18 03:42:40.934 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 03:42:40.964 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 03:42:40.964 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-18 03:42:41.094 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 03:42:41.124 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 03:42:41.124 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-18 03:42:41.124 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 03:42:41.254 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 03:42:41.284 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 03:42:41.604 -07 000000479 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 3 R1 5
17-03-18 03:42:41.604 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 115. Bubbles during last 5000 ms interval: R1=5, R2=3, Total=8. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1669, R2=1739, Total=3408. Warn if over 250 bubbles per interval.
17-03-18 03:42:41.714 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 03:42:41.744 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 03:42:41.744 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 03:42:41.744 -07 000000610 INF: =================== Cycle #116 ===================
17-03-18 03:42:41.744 -07 000000608 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 03:42:41.744 -07 000000479 INF: WaitCommand(10000) start
17-03-18 03:42:41.744 -07 000000608 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-18 03:42:42.964 -07 000000608 INF: AsyncDelayTimer waited 1216ms
17-03-18 03:42:42.964 -07 000000608 INF: LanePump: Xmit /1?\r
17-03-18 03:42:42.994 -07 000000608 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 03:42:42.994 -07 000000608 INF: LanePump: Current Position of Pump is: 1110
17-03-18 03:42:43.124 -07 000000608 INF: LanePump: Xmit /1V1500OA0R\r
17-03-18 03:42:43.164 -07 000000608 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 03:42:43.244 -07 000000606 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 116, FrontChillerTemperature: 4.011254,
17-03-18 03:42:44.694 -07 000000608 INF: LanePump: Xmit /1Q\r
17-03-18 03:42:44.724 -07 000000608 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 03:42:45.144 -07 000000608 INF: LanePump: Xmit /1Q\r
17-03-18 03:42:45.174 -07 000000608 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 03:42:45.174 -07 000000608 INF: LanePump: Waited 2009 ms for pump motion to complete
17-03-18 03:42:45.174 -07 000000608 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 03:42:45.174 -07 000000608 INF: ===================  ===================
17-03-18 03:42:46.604 -07 000000487 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 2
17-03-18 03:42:46.604 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 115. Bubbles during last 5000 ms interval: R1=2, R2=0, Total=2. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1671, R2=1739, Total=3410. Warn if over 250 bubbles per interval.
17-03-18 03:42:48.614 -07 000000608 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 116, FrontChillerTemperature: 3.999021,
17-03-18 03:42:51.604 -07 000000382 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 0
17-03-18 03:42:51.604 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 115. Bubbles during last 5000 ms interval: R1=0, R2=1, Total=1. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1671, R2=1740, Total=3411. Warn if over 250 bubbles per interval.
17-03-18 03:42:51.754 -07 000000479 INF: WaitCommand(10000) end
17-03-18 03:42:51.754 -07 000000610 INF: =================== Cycle #116, Imaging ===================
17-03-18 03:42:51.754 -07 000000610 INF: Imaging Cycle 116: ScanTilesCommand Cycle 116 time start.
17-03-18 03:42:51.754 -07 000000610 INF: ReagentValve: Go to position 24 (Plug) - Start of ScanTilesCommand
17-03-18 03:42:51.754 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 03:42:51.784 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 03:42:51.784 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 24. Moving 3 positions.
17-03-18 03:42:51.784 -07 000000610 INF: ReagentValve: Xmit -18\r
17-03-18 03:42:52.084 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 03:42:52.104 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-18 03:42:52.104 -07 000000610 INF: ReagentValve: Move- from 3 to 24 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-18 03:42:52.154 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 03:42:52.174 -07 000000610 INF: ReagentValve: Recv 18\r
17-03-18 03:42:52.174 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:42:52.174 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:42:52.174 -07 000000382 INF: RedLED: Snapping RedLED at power = 1930.000 mW, snap mode for ~0 ms start.
17-03-18 03:42:52.174 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:42:52.174 -07 000000382 INF: FPGA: Xmit EXLED1ON\n [RedLED]
17-03-18 03:42:52.174 -07 000000487 INF: FPGA: Recv EXLED1ON 
17-03-18 03:42:52.184 -07 000000382 INF: FPGA: 'EXLED1ON' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 03:42:52.184 -07 000000382 INF: FPGA: Xmit EXLED1ADCR\n [RedLED]
17-03-18 03:42:52.184 -07 000000437 INF: FPGA: Recv EXLED1ADCR 23067
17-03-18 03:42:52.194 -07 000000382 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:42:52.194 -07 000000382 INF: RedLED: Using Red data: Photodiode ADC 23067 --> 7.4 mW (old method), or 204.5 mW (new method). Difference = 197.1 mW
17-03-18 03:42:52.194 -07 000000382 INF: FPGA: Xmit EXLED1OFF\n [RedLED]
17-03-18 03:42:52.194 -07 000000487 INF: FPGA: Recv EXLED1OFF 
17-03-18 03:42:52.204 -07 000000382 INF: FPGA: 'EXLED1OFF' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:42:52.204 -07 000000382 INF: RedLED: LED was on for 19 ms
17-03-18 03:42:52.204 -07 000000382 INF: RedLED: Snapping RedLED at power = 1930.000 mW, snap mode for ~0 ms end. Duration was 26 ms.
17-03-18 03:42:52.204 -07 000000382 INF: GreenLED: Snapping GreenLED at power = 5964.000 mW, snap mode for ~0 ms start.
17-03-18 03:42:52.204 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:42:52.204 -07 000000382 INF: FPGA: Xmit EXLED2ON\n [GreenLED]
17-03-18 03:42:52.204 -07 000000437 INF: FPGA: Recv EXLED2ON 
17-03-18 03:42:52.214 -07 000000382 INF: FPGA: 'EXLED2ON' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 03:42:52.214 -07 000000382 INF: FPGA: Xmit EXLED1ADCR\n [GreenLED]
17-03-18 03:42:52.214 -07 000000608 INF: FPGA: Recv EXLED1ADCR 2100
17-03-18 03:42:52.224 -07 000000382 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:42:52.224 -07 000000382 INF: GreenLED: Using Green data: Photodiode ADC 2100 --> 0.9 mW (old method), or 182.5 mW (new method). Difference = 181.5 mW
17-03-18 03:42:52.224 -07 000000382 INF: FPGA: Xmit EXLED2OFF\n [GreenLED]
17-03-18 03:42:52.224 -07 000000479 INF: FPGA: Recv EXLED2OFF 
17-03-18 03:42:52.234 -07 000000382 INF: FPGA: 'EXLED2OFF' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:42:52.234 -07 000000382 INF: GreenLED: LED was on for 19 ms
17-03-18 03:42:52.234 -07 000000382 INF: GreenLED: Snapping GreenLED at power = 5964.000 mW, snap mode for ~0 ms end. Duration was 28 ms.
17-03-18 03:42:52.234 -07 000000610 INF: FPGA: Xmit EMCUR 80\n [Compensator]
17-03-18 03:42:52.234 -07 000000382 INF: FPGA: Recv EMCUR 
17-03-18 03:42:52.244 -07 000000610 INF: FPGA: 'EMCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 03:42:52.244 -07 000000610 INF: FPGA: Xmit EMOUT 20 70\n [Compensator]
17-03-18 03:42:52.744 -07 000000382 INF: FPGA: Recv EMOUT
17-03-18 03:42:52.744 -07 000000610 INF: FPGA: 'EMOUT 20 70' command took 0 ms to send, 493 ms to get response, and 502 ms overall
17-03-18 03:42:52.744 -07 000000610 INF: FPGA: Xmit EMCUR 75\n [Compensator]
17-03-18 03:42:52.744 -07 000000487 INF: FPGA: Recv EMCUR 
17-03-18 03:42:52.754 -07 000000610 INF: FPGA: 'EMCUR 75' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 03:42:52.754 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 03:42:52.754 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 1 at Y-position 75.38427734375, Z-Position -0.126734715728613. ------
17-03-18 03:42:52.754 -07 000000479 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 03:42:52.754 -07 000000581 INF: Y Motor: MoveYZ optimized starting. Moving Y to 59.9126 mm, moving Z to -0.17863 mm
17-03-18 03:42:52.754 -07 000000581 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 03:42:52.764 -07 000000382 INF: FPGA: Recv FOCMRRCUR 
17-03-18 03:42:52.764 -07 000000479 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 03:42:52.764 -07 000000479 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 03:42:52.764 -07 000000487 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True)
17-03-18 03:42:52.764 -07 000000487 INF: Y Motor: Moving to 59.9126 mm, started at 75.3843 mm, delta = -15.4717 mm
17-03-18 03:42:52.764 -07 000000382 INF: Z Motor: Entering MoveAbsStepped (DAC = 39021, sync = True, waitForSettling = False)
17-03-18 03:42:52.764 -07 000000382 INF: Z Motor: Moving to -0.178627 mm, started at -0.126735 mm, distance = -51.89 um
17-03-18 03:42:52.774 -07 000000487 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:42:52.774 -07 000000608 INF: FPGA: Recv YRDPOS 154387
17-03-18 03:42:52.784 -07 000000487 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-18 03:42:52.784 -07 000000487 INF: Y Motor: Encoder = 154387 = motor step 120614.8 = 75.3843 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:42:52.784 -07 000000487 INF: Y Motor: Last commanded position = 75.3806 mm (120608.9 steps), delta from last commanded position = -15.4680 mm (-24748.8 steps). UsingTableMove = False
17-03-18 03:42:52.784 -07 000000487 INF: Y Motor: Moving to 122701 encoder counts
17-03-18 03:42:52.784 -07 000000382 INF: FPGA: Xmit ZDACW 39021\n [Z Motor]
17-03-18 03:42:52.794 -07 000000487 INF: FPGA: Xmit YMVTO 122701\n [Y Motor]
17-03-18 03:42:53.694 -07 000000012 INF: FPGA: Recv ZDACW
17-03-18 03:42:53.694 -07 000000012 INF: FPGA: Recv FOCMRRFOC
17-03-18 03:42:53.694 -07 000000382 INF: FPGA: 'ZDACW 39021' command took 1 ms to send, 900 ms to get response, and 927 ms overall
17-03-18 03:42:53.694 -07 000000479 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 920 ms to get response, and 929 ms overall
17-03-18 03:42:53.694 -07 000000382 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:42:53.694 -07 000000479 INF: FPGA: Recv ZDACR 39021
17-03-18 03:42:53.704 -07 000000382 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:42:53.704 -07 000000382 INF: Z Motor: MoveAbsStepped took 936 ms (did NOT wait for settling yet))
17-03-18 03:42:54.004 -07 000000012 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 116, FrontChillerTemperature: 4.008536,
17-03-18 03:42:54.474 -07 000000479 INF: FPGA: Recv YMVTO 122703 24782
17-03-18 03:42:54.474 -07 000000487 INF: FPGA: 'YMVTO 122701' command took 0 ms to send, 1676 ms to get response, and 1695 ms overall
17-03-18 03:42:54.474 -07 000000487 INF: Y Motor: Position error before settling = 2 encoder counts (0.001 mm)
17-03-18 03:42:54.474 -07 000000487 INF: Y Motor: To move from 75.384 to 59.913 (-15.472 mm) should take 24755 steps, but required 24782 steps (15.489 mm). Slippage = 0.017 mm (0.00%).
17-03-18 03:42:54.474 -07 000000487 INF: Y Motor: FPGA move command 'YMVTO 122701' took 1695 ms, distance = 15.472 mm, average velocity = 9.128 mm/sec
17-03-18 03:42:56.604 -07 000000479 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 0
17-03-18 03:42:56.604 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 115. Bubbles during last 5000 ms interval: R1=0, R2=1, Total=1. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1671, R2=1741, Total=3412. Warn if over 250 bubbles per interval.
17-03-18 03:42:57.324 -07 000000487 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:42:57.324 -07 000000479 INF: FPGA: Recv YRDPOS 122697
17-03-18 03:42:57.334 -07 000000487 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:42:57.334 -07 000000487 INF: Y Motor: Encoder = 122697 = motor step 95857.0 = 59.9106 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:42:57.364 -07 000000487 INF: Y Motor: After move to 59.912609, error = -0.001965, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 03:42:57.364 -07 000000487 INF: Y Motor: Position error after settling = -4 encoder counts (-0.002 mm), Delta during settling = -6 counts (-0.003 mm)
17-03-18 03:42:57.364 -07 000000487 INF: Y Motor: Moved to 59.9106 after 4597 ms
17-03-18 03:42:57.364 -07 000000581 INF: Z Motor: EndOfMoveAbsStepped: target = -0.178627 mm (DAC = 39021)
17-03-18 03:42:57.364 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:42:57.364 -07 000000487 INF: FPGA: Recv ZSGSRD 37102
17-03-18 03:42:57.374 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 03:42:57.374 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:42:57.374 -07 000000012 INF: FPGA: Recv ZSGSRD 37097
17-03-18 03:42:57.384 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:42:57.384 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:42:57.384 -07 000000012 INF: FPGA: Recv ZSGSRD 37095
17-03-18 03:42:57.394 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:42:57.394 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:42:57.394 -07 000000012 INF: FPGA: Recv ZSGSRD 37094
17-03-18 03:42:57.404 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:42:57.404 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:42:57.404 -07 000000012 INF: FPGA: Recv ZSGSRD 37097
17-03-18 03:42:57.414 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:42:57.414 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:42:57.414 -07 000000012 INF: FPGA: Recv ZSGSRD 37097
17-03-18 03:42:57.424 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:42:57.424 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:42:57.424 -07 000000487 INF: FPGA: Recv ZSGSRD 37094
17-03-18 03:42:57.434 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:42:57.434 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:42:57.434 -07 000000487 INF: FPGA: Recv ZSGSRD 37090
17-03-18 03:42:57.444 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:42:57.444 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:42:57.444 -07 000000487 INF: FPGA: Recv ZSGSRD 37092
17-03-18 03:42:57.454 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:42:57.454 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:42:57.454 -07 000000487 INF: FPGA: Recv ZSGSRD 37099
17-03-18 03:42:57.464 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:42:57.464 -07 000000581 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:42:57.464 -07 000000474 INF: FPGA: Recv ZPIEZORD 33351
17-03-18 03:42:57.474 -07 000000581 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:42:57.474 -07 000000581 INF: Z Motor: Piezo is near 51.2 V (nominally 0 to 100 V), expect near 59.5 V, since DAC is at 5.954 V. Piezo Error = -8.3 V.
17-03-18 03:42:57.474 -07 000000581 INF: Z Motor: ReadAdcAverage: Commanded Z = -178.6 um, Read 10 ADC samples: Avg = 37096 (-177.7 uncal um), Error = 0.9 uncal um, Median = 37096 (-177.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 37090 (-177.7 uncal um), Max = 37102 (-177.8 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 03:42:57.474 -07 000000581 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37096, posNoise = 6, negNoise = 6
17-03-18 03:42:57.474 -07 000000581 INF: Z Motor: After move to -0.178627, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:42:57.474 -07 000000581 INF: Z Motor: Settle wait time = 4600 ms, measure time = 107 ms (allowed 150 ms), total time = 4707 ms
17-03-18 03:42:57.474 -07 000000581 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-18 03:42:57.524 -07 000000581 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 4763 ms
17-03-18 03:42:57.524 -07 000000581 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 03:42:57.524 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:42:57.524 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:42:57.524 -07 000000487 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:42:57.524 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:42:57.524 -07 000000479 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 03:42:57.524 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:42:57.524 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 03:42:57.524 -07 000000479 INF: Camera: sBCa_SetPowerMode(785074288, 1) start.
17-03-18 03:42:57.554 -07 000000479 INF: Camera: sBCa_SetPowerMode(785074288, 1) end. Duration was 22 ms.
17-03-18 03:42:57.554 -07 000000479 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 03:42:57.554 -07 000000479 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms.
17-03-18 03:42:57.554 -07 000000479 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 03:42:57.564 -07 000000479 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 03:42:57.564 -07 000000479 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 41 ms.
17-03-18 03:42:57.574 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 03:42:57.614 -07 000000512 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 03:42:57.914 -07 000000012 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 03:42:57.914 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 03:42:57.914 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 03:42:57.914 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 611826936, 0x0, 559484976) start.
17-03-18 03:42:57.954 -07 000000581 INF: FPGA: Recv @CAMSNAP 380
17-03-18 03:42:57.954 -07 000000479 INF: FPGA: Recv CAMSNAP
17-03-18 03:42:57.954 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 375 ms to get response, and 385 ms overall
17-03-18 03:42:58.044 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 611826936, 0x0, 559484976) end. Duration was 127 ms.
17-03-18 03:42:58.044 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:42:58.044 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 03:42:58.044 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 130 ms.
17-03-18 03:42:58.154 -07 000000012 INF: Image SNR check: start
17-03-18 03:42:58.154 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 03:42:58.154 -07 000000474 INF: FPGA: Recv FOCMRRCUR 
17-03-18 03:42:58.164 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 03:42:58.164 -07 000000569 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 03:42:58.164 -07 000000012 INF: Image SNR check: pass  [peak (Max-Min)=145.62]
17-03-18 03:42:58.164 -07 000000012 INF: Autofocus start
17-03-18 03:42:58.164 -07 000000012 INF: MeasureProfile start
17-03-18 03:42:58.184 -07 000000012 INF: MeasureProfile done
17-03-18 03:42:58.184 -07 000000012 INF: X=32  Z correction [um]=0.09220707
17-03-18 03:42:58.184 -07 000000012 INF: Autofocus finished
17-03-18 03:42:58.364 -07 000000512 INF: FPGA: Recv FOCMRRIMG
17-03-18 03:42:58.364 -07 000000569 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 03:42:58.364 -07 000000610 INF: ------------ Scan Snapping tile 1 at Y-position 59.91064453125, Z-position -0.178635925621899. ----------
17-03-18 03:42:58.364 -07 000000610 INF: Cycle	116	Tile	1	Exposure Settings		A	410	G	197	T	197	C	410
17-03-18 03:42:58.374 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37554, sync = True, waitForSettling = True)
17-03-18 03:42:58.374 -07 000000610 INF: Z Motor: Moving to -0.171911 mm, started at -0.178636 mm, distance = 6.72 um
17-03-18 03:42:58.374 -07 000000610 INF: FPGA: Xmit ZDACW 37554\n [Z Motor]
17-03-18 03:42:58.374 -07 000000012 INF: FPGA: Recv ZDACW
17-03-18 03:42:58.384 -07 000000610 INF: FPGA: 'ZDACW 37554' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:42:58.384 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:42:58.384 -07 000000606 INF: FPGA: Recv ZDACR 37554
17-03-18 03:42:58.394 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:42:58.394 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 03:42:58.544 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:42:58.544 -07 000000479 INF: FPGA: Recv ZSGSRD 36053
17-03-18 03:42:58.554 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:42:58.554 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:42:58.554 -07 000000012 INF: FPGA: Recv ZSGSRD 36051
17-03-18 03:42:58.564 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:42:58.564 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:42:58.564 -07 000000606 INF: FPGA: Recv ZSGSRD 36052
17-03-18 03:42:58.574 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:42:58.574 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:42:58.574 -07 000000512 INF: FPGA: Recv ZSGSRD 36053
17-03-18 03:42:58.584 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:42:58.584 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:42:58.584 -07 000000479 INF: FPGA: Recv ZSGSRD 36055
17-03-18 03:42:58.594 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:42:58.594 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:42:58.594 -07 000000474 INF: FPGA: Recv ZSGSRD 36047
17-03-18 03:42:58.604 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:42:58.604 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:42:58.604 -07 000000569 INF: FPGA: Recv ZSGSRD 36049
17-03-18 03:42:58.614 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:42:58.614 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:42:58.614 -07 000000581 INF: FPGA: Recv ZSGSRD 36056
17-03-18 03:42:58.624 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:42:58.624 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:42:58.624 -07 000000474 INF: FPGA: Recv ZSGSRD 36046
17-03-18 03:42:58.634 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:42:58.634 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:42:58.634 -07 000000512 INF: FPGA: Recv ZSGSRD 36050
17-03-18 03:42:58.644 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:42:58.644 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:42:58.644 -07 000000479 INF: FPGA: Recv ZPIEZORD 31914
17-03-18 03:42:58.654 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:42:58.654 -07 000000610 INF: Z Motor: Piezo is near 48.2 V (nominally 0 to 100 V), expect near 57.3 V, since DAC is at 5.730 V. Piezo Error = -9.1 V.
17-03-18 03:42:58.654 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.9 um, Read 10 ADC samples: Avg = 36051 (-171.0 uncal um), Error = 0.9 uncal um, Median = 36052 (-171.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 36046 (-171.0 uncal um), Max = 36056 (-171.1 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 03:42:58.654 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36051, posNoise = 5, negNoise = 5
17-03-18 03:42:58.654 -07 000000610 INF: Z Motor: After move to -0.171911, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:42:58.654 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-18 03:42:58.654 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:42:58.654 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:42:58.654 -07 000000487 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:42:58.654 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:42:58.654 -07 000000606 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 03:42:58.654 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:42:58.654 -07 000000479 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 03:42:58.654 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 03:42:58.654 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 03:42:58.654 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 03:42:58.654 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 03:42:58.654 -07 000000479 INF: Camera: sBCa_SetPowerMode(785074704, 1) start.
17-03-18 03:42:58.654 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 03:42:58.664 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 03:42:58.674 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 03:42:58.674 -07 000000606 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 03:42:58.674 -07 000000479 INF: Camera: sBCa_SetPowerMode(785074704, 1) end. Duration was 20 ms.
17-03-18 03:42:58.674 -07 000000479 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 03:42:58.684 -07 000000479 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 03:42:58.684 -07 000000479 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 03:42:58.694 -07 000000479 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 11 ms.
17-03-18 03:42:58.694 -07 000000479 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 36 ms.
17-03-18 03:42:58.694 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 410 410 197 197 37731 150\n [Camera]
17-03-18 03:42:58.894 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 03:42:59.304 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 602
17-03-18 03:42:59.304 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 602
17-03-18 03:42:59.304 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:42:59.304 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:42:59.304 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 2168768160, 0x0, 391868352) start.
17-03-18 03:42:59.304 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 602
17-03-18 03:42:59.304 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 602
17-03-18 03:42:59.304 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:42:59.304 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:42:59.304 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2204190424, 0x0, 418435064) start.
17-03-18 03:42:59.374 -07 000000479 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 116, FrontChillerTemperature: 3.989471,
17-03-18 03:42:59.494 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37731 795
17-03-18 03:42:59.644 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP turning grn on 945
17-03-18 03:42:59.704 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 2168768160, 0x0, 391868352) end. Duration was 400 ms.
17-03-18 03:42:59.704 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 03:42:59.704 -07 000000474 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:42:59.704 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2204190424, 0x0, 418435064) end. Duration was 399 ms.
17-03-18 03:42:59.704 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 03:42:59.704 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:42:59.714 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:42:59.714 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-18 03:42:59.714 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 03:42:59.724 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-18 03:42:59.844 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1142
17-03-18 03:42:59.844 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1142
17-03-18 03:42:59.844 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:42:59.954 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1142
17-03-18 03:42:59.954 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1142
17-03-18 03:42:59.954 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:42:59.954 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:42:59.954 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 03:42:59.964 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:42:59.964 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 03:43:00.034 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP 1334
17-03-18 03:43:00.034 -07 000000474 INF: FPGA: Recv CAMDBLSNAP
17-03-18 03:43:00.034 -07 000000610 INF: FPGA: 'CAMDBLSNAP 410 410 197 197 37731 150' command took 2 ms to send, 1335 ms to get response, and 1341 ms overall
17-03-18 03:43:00.034 -07 000000610 INF: Skipping AutoFocus in Tile 2: adopting Best-Z from the cache: -0.172231
17-03-18 03:43:00.034 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 60.7426 mm, moving Z to -0.17223 mm
17-03-18 03:43:00.034 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 03:43:00.044 -07 000000474 INF: Y Motor: Entering MoveAbsStepped (target = 97188 steps, sync = True, waitForSettling = True)
17-03-18 03:43:00.044 -07 000000474 INF: Y Motor: Moving to 60.7426 mm, started at 59.9106 mm, delta = 0.8320 mm
17-03-18 03:43:00.044 -07 000000474 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:43:00.044 -07 000000487 INF: Z Motor: Entering MoveAbsStepped (DAC = 37624, sync = True, waitForSettling = False)
17-03-18 03:43:00.044 -07 000000487 INF: Z Motor: Moving to -0.172232 mm, started at -0.171923 mm, distance = -0.31 um
17-03-18 03:43:00.054 -07 000000487 INF: FPGA: Xmit ZDACW 37624\n [Z Motor]
17-03-18 03:43:00.354 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 387 ms.
17-03-18 03:43:00.354 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-18 03:43:00.354 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:43:00.354 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:43:00.354 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 400 ms.
17-03-18 03:43:00.354 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 03:43:00.354 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:43:00.364 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:43:00.364 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 516 ms.
17-03-18 03:43:00.364 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 406 ms.
17-03-18 03:43:00.374 -07 000000606 INF: FPGA: Recv YRDPOS 122697
17-03-18 03:43:00.374 -07 000000606 INF: FPGA: Recv ZDACW
17-03-18 03:43:00.374 -07 000000474 INF: FPGA: 'YRDPOS' command took 0 ms to send, 322 ms to get response, and 331 ms overall
17-03-18 03:43:00.374 -07 000000487 INF: FPGA: 'ZDACW 37624' command took 0 ms to send, 312 ms to get response, and 331 ms overall
17-03-18 03:43:00.374 -07 000000487 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:43:00.374 -07 000000474 INF: Y Motor: Encoder = 122697 = motor step 95857.0 = 59.9106 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:43:00.374 -07 000000474 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 03:43:00.374 -07 000000474 INF: Y Motor: Moving 1331 steps2
17-03-18 03:43:00.374 -07 000000512 INF: FPGA: Recv ZDACR 37624
17-03-18 03:43:00.384 -07 000000474 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 03:43:00.384 -07 000000487 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 03:43:00.384 -07 000000487 INF: Z Motor: MoveAbsStepped took 339 ms (did NOT wait for settling yet))
17-03-18 03:43:00.754 -07 000000606 INF: FPGA: Recv YMVTILE
17-03-18 03:43:00.754 -07 000000474 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 367 ms to get response, and 384 ms overall
17-03-18 03:43:00.794 -07 000000474 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:43:00.794 -07 000000487 INF: FPGA: Recv YRDPOS 124381
17-03-18 03:43:00.804 -07 000000474 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 03:43:00.804 -07 000000474 INF: Y Motor: Encoder = 124381 = motor step 97172.7 = 60.7329 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:43:00.804 -07 000000474 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-18 03:43:00.804 -07 000000474 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 385 ms, distance = 0.832 mm, average velocity = 2.161 mm/sec
17-03-18 03:43:01.604 -07 000000606 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 03:43:01.604 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 115. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1671, R2=1741, Total=3412. Warn if over 250 bubbles per interval.
17-03-18 03:43:01.754 -07 000000474 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:43:01.754 -07 000000512 INF: FPGA: Recv YRDPOS 124381
17-03-18 03:43:01.764 -07 000000474 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:01.764 -07 000000474 INF: Y Motor: Encoder = 124381 = motor step 97172.7 = 60.7329 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:43:01.794 -07 000000474 INF: Y Motor: After move to 60.742607, error = -0.009697, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 03:43:01.794 -07 000000474 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 03:43:01.794 -07 000000474 INF: Y Motor: Moved to 60.7329 after 1750 ms (table move)
17-03-18 03:43:01.794 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.172232 mm (DAC = 37624)
17-03-18 03:43:01.794 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:01.794 -07 000000474 INF: FPGA: Recv ZSGSRD 36100
17-03-18 03:43:01.804 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 03:43:01.804 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:01.804 -07 000000512 INF: FPGA: Recv ZSGSRD 36102
17-03-18 03:43:01.814 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:01.814 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:01.814 -07 000000512 INF: FPGA: Recv ZSGSRD 36099
17-03-18 03:43:01.824 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:01.824 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:01.824 -07 000000474 INF: FPGA: Recv ZSGSRD 36096
17-03-18 03:43:01.834 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:01.834 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:01.834 -07 000000487 INF: FPGA: Recv ZSGSRD 36102
17-03-18 03:43:01.844 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:01.844 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:01.844 -07 000000512 INF: FPGA: Recv ZSGSRD 36106
17-03-18 03:43:01.854 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:01.854 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:01.854 -07 000000606 INF: FPGA: Recv ZSGSRD 36104
17-03-18 03:43:01.864 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:01.864 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:01.864 -07 000000487 INF: FPGA: Recv ZSGSRD 36099
17-03-18 03:43:01.874 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:01.874 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:01.874 -07 000000487 INF: FPGA: Recv ZSGSRD 36097
17-03-18 03:43:01.884 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:01.884 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:01.884 -07 000000512 INF: FPGA: Recv ZSGSRD 36100
17-03-18 03:43:01.894 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:01.894 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:43:01.894 -07 000000474 INF: FPGA: Recv ZPIEZORD 32026
17-03-18 03:43:01.904 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:01.904 -07 000000610 INF: Z Motor: Piezo is near 48.4 V (nominally 0 to 100 V), expect near 57.4 V, since DAC is at 5.741 V. Piezo Error = -9.0 V.
17-03-18 03:43:01.904 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.2 um, Read 10 ADC samples: Avg = 36100 (-171.4 uncal um), Error = 0.9 uncal um, Median = 36100 (-171.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 36096 (-171.3 uncal um), Max = 36106 (-171.4 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 03:43:01.904 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36100, posNoise = 6, negNoise = 4
17-03-18 03:43:01.904 -07 000000610 INF: Z Motor: After move to -0.172232, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:43:01.904 -07 000000610 INF: Z Motor: Settle wait time = 1752 ms, measure time = 107 ms (allowed 150 ms), total time = 1859 ms
17-03-18 03:43:01.904 -07 000000610 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-18 03:43:01.954 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1911 ms
17-03-18 03:43:01.954 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 03:43:01.954 -07 000000610 INF: ------------ Scan Snapping tile 2 at Y-position 60.73291015625, Z-position -0.172237410328706. ----------
17-03-18 03:43:01.954 -07 000000610 INF: Cycle	116	Tile	2	Exposure Settings		A	410	G	197	T	197	C	410
17-03-18 03:43:01.954 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37447, sync = True, waitForSettling = True)
17-03-18 03:43:01.954 -07 000000610 INF: Z Motor: Moving to -0.171421 mm, started at -0.172237 mm, distance = 0.82 um
17-03-18 03:43:01.954 -07 000000610 INF: FPGA: Xmit ZDACW 37447\n [Z Motor]
17-03-18 03:43:01.954 -07 000000487 INF: FPGA: Recv ZDACW
17-03-18 03:43:01.964 -07 000000610 INF: FPGA: 'ZDACW 37447' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 03:43:01.964 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:43:01.964 -07 000000512 INF: FPGA: Recv ZDACR 37447
17-03-18 03:43:01.974 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:01.974 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 03:43:02.124 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:02.124 -07 000000474 INF: FPGA: Recv ZSGSRD 35971
17-03-18 03:43:02.134 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:43:02.134 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:02.134 -07 000000462 INF: FPGA: Recv ZSGSRD 35978
17-03-18 03:43:02.144 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:02.144 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:02.144 -07 000000474 INF: FPGA: Recv ZSGSRD 35970
17-03-18 03:43:02.154 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:02.154 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:02.154 -07 000000611 INF: FPGA: Recv ZSGSRD 35974
17-03-18 03:43:02.164 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:02.164 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:02.164 -07 000000512 INF: FPGA: Recv ZSGSRD 35978
17-03-18 03:43:02.174 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:02.174 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:02.174 -07 000000606 INF: FPGA: Recv ZSGSRD 35975
17-03-18 03:43:02.184 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:02.184 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:02.184 -07 000000462 INF: FPGA: Recv ZSGSRD 35976
17-03-18 03:43:02.194 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:02.194 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:02.194 -07 000000606 INF: FPGA: Recv ZSGSRD 35974
17-03-18 03:43:02.204 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:02.204 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:02.204 -07 000000487 INF: FPGA: Recv ZSGSRD 35974
17-03-18 03:43:02.214 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:02.214 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:02.214 -07 000000606 INF: FPGA: Recv ZSGSRD 35977
17-03-18 03:43:02.224 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:02.224 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:43:02.224 -07 000000462 INF: FPGA: Recv ZPIEZORD 31839
17-03-18 03:43:02.234 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:02.234 -07 000000610 INF: Z Motor: Piezo is near 48.0 V (nominally 0 to 100 V), expect near 57.1 V, since DAC is at 5.714 V. Piezo Error = -9.1 V.
17-03-18 03:43:02.234 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.4 um, Read 10 ADC samples: Avg = 35975 (-170.6 uncal um), Error = 0.9 uncal um, Median = 35974 (-170.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35970 (-170.5 uncal um), Max = 35978 (-170.6 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 03:43:02.234 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35975, posNoise = 3, negNoise = 5
17-03-18 03:43:02.234 -07 000000610 INF: Z Motor: After move to -0.171421, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:43:02.234 -07 000000610 INF: Z Motor: MoveAbsStepped took 274 ms)
17-03-18 03:43:02.234 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:43:02.234 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:43:02.234 -07 000000606 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:43:02.234 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 03:43:02.234 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:43:02.234 -07 000000611 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 03:43:02.234 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 03:43:02.234 -07 000000487 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:43:02.234 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 03:43:02.234 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 03:43:02.234 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 03:43:02.234 -07 000000611 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 03:43:02.244 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 03:43:02.244 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 03:43:02.244 -07 000000611 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 03:43:02.244 -07 000000611 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 03:43:02.254 -07 000000611 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 13 ms.
17-03-18 03:43:02.254 -07 000000611 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 18 ms.
17-03-18 03:43:02.254 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 13 ms.
17-03-18 03:43:02.254 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 18 ms.
17-03-18 03:43:02.254 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 410 410 197 197 37624 150\n [Camera]
17-03-18 03:43:02.454 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 03:43:02.864 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 602
17-03-18 03:43:02.864 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 602
17-03-18 03:43:02.864 -07 000000437 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:43:02.874 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 602
17-03-18 03:43:02.874 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 602
17-03-18 03:43:02.874 -07 000000474 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:43:02.874 -07 000000474 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:43:02.874 -07 000000474 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start.
17-03-18 03:43:02.874 -07 000000437 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:43:02.874 -07 000000437 INF: Camera: sBCa_ReadImage(785074288, 2199785120, 0x0, 391868352) start.
17-03-18 03:43:03.064 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37624 795
17-03-18 03:43:03.214 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning grn on 945
17-03-18 03:43:03.274 -07 000000474 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 399 ms.
17-03-18 03:43:03.274 -07 000000474 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 03:43:03.274 -07 000000474 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:43:03.274 -07 000000437 INF: Camera: sBCa_ReadImage(785074288, 2199785120, 0x0, 391868352) end. Duration was 397 ms.
17-03-18 03:43:03.274 -07 000000437 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 03:43:03.274 -07 000000437 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:43:03.274 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 03:43:03.274 -07 000000437 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 03:43:03.274 -07 000000437 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms.
17-03-18 03:43:03.284 -07 000000474 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-18 03:43:03.404 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1142
17-03-18 03:43:03.404 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1142
17-03-18 03:43:03.404 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:43:03.404 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:43:03.404 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) start.
17-03-18 03:43:03.414 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1142
17-03-18 03:43:03.414 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1142
17-03-18 03:43:03.414 -07 000000437 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:43:03.414 -07 000000437 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:43:03.414 -07 000000437 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 03:43:03.594 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP 1335
17-03-18 03:43:03.594 -07 000000608 INF: FPGA: Recv CAMDBLSNAP
17-03-18 03:43:03.604 -07 000000610 INF: FPGA: 'CAMDBLSNAP 410 410 197 197 37624 150' command took 2 ms to send, 1329 ms to get response, and 1342 ms overall
17-03-18 03:43:03.604 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 03:43:03.604 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 3 at Y-position 60.73291015625, Z-Position -0.171434383810985. ------
17-03-18 03:43:03.604 -07 000000462 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 03:43:03.604 -07 000000382 INF: Y Motor: MoveYZ optimized starting. Moving Y to 61.5726 mm, moving Z to -0.17808 mm
17-03-18 03:43:03.604 -07 000000382 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 03:43:03.614 -07 000000611 INF: FPGA: Recv FOCMRRCUR 
17-03-18 03:43:03.614 -07 000000512 INF: Y Motor: Entering MoveAbsStepped (target = 98516 steps, sync = True, waitForSettling = True)
17-03-18 03:43:03.614 -07 000000512 INF: Y Motor: Moving to 61.5726 mm, started at 60.7329 mm, delta = 0.8397 mm
17-03-18 03:43:03.614 -07 000000462 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 03:43:03.614 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:43:03.614 -07 000000608 INF: Z Motor: Entering MoveAbsStepped (DAC = 38902, sync = True, waitForSettling = False)
17-03-18 03:43:03.614 -07 000000608 INF: Z Motor: Moving to -0.178082 mm, started at -0.171434 mm, distance = -6.65 um
17-03-18 03:43:03.614 -07 000000581 INF: FPGA: Recv YRDPOS 124381
17-03-18 03:43:03.624 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 03:43:03.624 -07 000000462 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 03:43:03.624 -07 000000512 INF: Y Motor: Encoder = 124381 = motor step 97172.7 = 60.7329 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:43:03.624 -07 000000512 INF: Y Motor: Last commanded position = 60.7426 mm (97188.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 03:43:03.624 -07 000000512 INF: Y Motor: Moving 1344 steps-20
17-03-18 03:43:03.634 -07 000000608 INF: FPGA: Xmit ZDACW 38902\n [Z Motor]
17-03-18 03:43:03.634 -07 000000479 INF: FPGA: Recv ZDACW
17-03-18 03:43:03.644 -07 000000608 INF: FPGA: 'ZDACW 38902' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-18 03:43:03.644 -07 000000512 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 03:43:03.654 -07 000000608 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:43:03.654 -07 000000012 INF: FPGA: Recv ZDACR 38902
17-03-18 03:43:03.664 -07 000000608 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 03:43:03.664 -07 000000608 INF: Z Motor: MoveAbsStepped took 47 ms (did NOT wait for settling yet))
17-03-18 03:43:03.814 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) end. Duration was 401 ms.
17-03-18 03:43:03.814 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 03:43:03.814 -07 000000474 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:43:03.814 -07 000000437 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 401 ms.
17-03-18 03:43:03.814 -07 000000437 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 03:43:03.814 -07 000000437 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:43:03.814 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:43:03.814 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-18 03:43:03.814 -07 000000437 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:43:03.824 -07 000000437 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-18 03:43:03.834 -07 000000487 INF: FPGA: Recv FOCMRRFOC
17-03-18 03:43:03.834 -07 000000462 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 203 ms to get response, and 221 ms overall
17-03-18 03:43:04.014 -07 000000462 INF: FPGA: Recv YMVTILE
17-03-18 03:43:04.014 -07 000000512 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 03:43:04.064 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:43:04.064 -07 000000487 INF: FPGA: Recv YRDPOS 126083
17-03-18 03:43:04.074 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 03:43:04.074 -07 000000512 INF: Y Motor: Encoder = 126083 = motor step 98502.3 = 61.5640 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:43:04.074 -07 000000512 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-18 03:43:04.074 -07 000000512 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.840 mm, average velocity = 2.110 mm/sec
17-03-18 03:43:04.734 -07 000000487 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 116, FrontChillerTemperature: 4.026244,
17-03-18 03:43:05.024 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:43:05.024 -07 000000487 INF: FPGA: Recv YRDPOS 126083
17-03-18 03:43:05.034 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:43:05.034 -07 000000512 INF: Y Motor: Encoder = 126083 = motor step 98502.3 = 61.5640 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:43:05.064 -07 000000512 INF: Y Motor: After move to 61.572609, error = -0.008644, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 03:43:05.064 -07 000000512 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 03:43:05.064 -07 000000512 INF: Y Motor: Moved to 61.5640 after 1449 ms (table move)
17-03-18 03:43:05.064 -07 000000382 INF: Z Motor: EndOfMoveAbsStepped: target = -0.178082 mm (DAC = 38902)
17-03-18 03:43:05.084 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:05.084 -07 000000512 INF: FPGA: Recv ZSGSRD 37012
17-03-18 03:43:05.094 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-18 03:43:05.104 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:05.104 -07 000000487 INF: FPGA: Recv ZSGSRD 37016
17-03-18 03:43:05.114 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 20 ms overall
17-03-18 03:43:05.114 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:05.114 -07 000000487 INF: FPGA: Recv ZSGSRD 37013
17-03-18 03:43:05.124 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:05.124 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:05.124 -07 000000462 INF: FPGA: Recv ZSGSRD 37006
17-03-18 03:43:05.134 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:05.134 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:05.134 -07 000000512 INF: FPGA: Recv ZSGSRD 37012
17-03-18 03:43:05.144 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:05.144 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:05.144 -07 000000462 INF: FPGA: Recv ZSGSRD 37000
17-03-18 03:43:05.154 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:05.154 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:05.154 -07 000000569 INF: FPGA: Recv ZSGSRD 37005
17-03-18 03:43:05.164 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:05.164 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:05.164 -07 000000462 INF: FPGA: Recv ZSGSRD 37018
17-03-18 03:43:05.174 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:05.174 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:05.174 -07 000000462 INF: FPGA: Recv ZSGSRD 37016
17-03-18 03:43:05.184 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:05.184 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:05.184 -07 000000512 INF: FPGA: Recv ZSGSRD 37017
17-03-18 03:43:05.194 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:05.194 -07 000000382 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:43:05.194 -07 000000487 INF: FPGA: Recv ZPIEZORD 33211
17-03-18 03:43:05.204 -07 000000382 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:05.204 -07 000000382 INF: Z Motor: Piezo is near 50.9 V (nominally 0 to 100 V), expect near 59.4 V, since DAC is at 5.936 V. Piezo Error = -8.4 V.
17-03-18 03:43:05.204 -07 000000382 INF: Z Motor: ReadAdcAverage: Commanded Z = -178.1 um, Read 10 ADC samples: Avg = 37012 (-177.2 uncal um), Error = 0.9 uncal um, Median = 37012 (-177.2 uncal um), StdDev = 6 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 37000 (-177.1 uncal um), Max = 37018 (-177.2 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 12 (0.1 uncal um)
17-03-18 03:43:05.204 -07 000000382 INF: Z Motor: ADC noise = 12, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37012, posNoise = 6, negNoise = 12
17-03-18 03:43:05.204 -07 000000382 INF: Z Motor: After move to -0.178082, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:43:05.204 -07 000000382 INF: Z Motor: Settle wait time = 1454 ms, measure time = 134 ms (allowed 150 ms), total time = 1588 ms
17-03-18 03:43:05.204 -07 000000382 INF: Z Motor: Waiting extra 16 ms after reading position to reach expected total of 150 ms
17-03-18 03:43:05.224 -07 000000382 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1613 ms
17-03-18 03:43:05.224 -07 000000382 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 03:43:05.224 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:43:05.224 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:43:05.224 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:43:05.224 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 03:43:05.224 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:43:05.224 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:43:05.224 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 03:43:05.224 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 03:43:05.234 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 03:43:05.234 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 03:43:05.244 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-18 03:43:05.244 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 14 ms.
17-03-18 03:43:05.244 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 03:43:05.284 -07 000000382 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 03:43:05.584 -07 000000382 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 03:43:05.584 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 03:43:05.594 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 03:43:05.594 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-18 03:43:05.624 -07 000000608 INF: FPGA: Recv @CAMSNAP 380
17-03-18 03:43:05.634 -07 000000437 INF: FPGA: Recv CAMSNAP
17-03-18 03:43:05.634 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 381 ms to get response, and 387 ms overall
17-03-18 03:43:05.714 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 126 ms.
17-03-18 03:43:05.714 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:43:05.714 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 03:43:05.714 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-18 03:43:05.844 -07 000000487 INF: Autofocus start
17-03-18 03:43:05.844 -07 000000487 INF: MeasureProfile start
17-03-18 03:43:05.844 -07 000000608 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 03:43:05.854 -07 000000512 INF: FPGA: Recv FOCMRRCUR 
17-03-18 03:43:05.854 -07 000000608 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 03:43:05.854 -07 000000608 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 03:43:05.864 -07 000000487 INF: MeasureProfile done
17-03-18 03:43:05.864 -07 000000487 INF: X=0  Z correction [um]=-0.0713522
17-03-18 03:43:05.864 -07 000000487 INF: Autofocus finished
17-03-18 03:43:06.054 -07 000000512 INF: FPGA: Recv FOCMRRIMG
17-03-18 03:43:06.054 -07 000000608 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 195 ms to get response, and 202 ms overall
17-03-18 03:43:06.064 -07 000000610 INF: ------------ Scan Snapping tile 3 at Y-position 61.56396484375, Z-position -0.178096291801991. ----------
17-03-18 03:43:06.064 -07 000000610 INF: Cycle	116	Tile	3	Exposure Settings		A	410	G	197	T	197	C	410
17-03-18 03:43:06.064 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37399, sync = True, waitForSettling = True)
17-03-18 03:43:06.064 -07 000000610 INF: Z Motor: Moving to -0.171202 mm, started at -0.178096 mm, distance = 6.89 um
17-03-18 03:43:06.064 -07 000000610 INF: FPGA: Xmit ZDACW 37399\n [Z Motor]
17-03-18 03:43:06.064 -07 000000479 INF: FPGA: Recv ZDACW
17-03-18 03:43:06.074 -07 000000610 INF: FPGA: 'ZDACW 37399' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 03:43:06.074 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:43:06.074 -07 000000382 INF: FPGA: Recv ZDACR 37399
17-03-18 03:43:06.084 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:06.084 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 03:43:06.234 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:06.234 -07 000000487 INF: FPGA: Recv ZSGSRD 35940
17-03-18 03:43:06.244 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:43:06.244 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:06.244 -07 000000437 INF: FPGA: Recv ZSGSRD 35945
17-03-18 03:43:06.254 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:06.254 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:06.254 -07 000000487 INF: FPGA: Recv ZSGSRD 35944
17-03-18 03:43:06.264 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:06.264 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:06.264 -07 000000512 INF: FPGA: Recv ZSGSRD 35940
17-03-18 03:43:06.274 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:06.274 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:06.274 -07 000000487 INF: FPGA: Recv ZSGSRD 35942
17-03-18 03:43:06.284 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:06.284 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:06.284 -07 000000382 INF: FPGA: Recv ZSGSRD 35949
17-03-18 03:43:06.294 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:06.294 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:06.294 -07 000000462 INF: FPGA: Recv ZSGSRD 35941
17-03-18 03:43:06.304 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:06.304 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:06.304 -07 000000474 INF: FPGA: Recv ZSGSRD 35934
17-03-18 03:43:06.314 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:06.314 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:06.314 -07 000000474 INF: FPGA: Recv ZSGSRD 35939
17-03-18 03:43:06.324 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:06.324 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:06.334 -07 000000474 INF: FPGA: Recv ZSGSRD 35942
17-03-18 03:43:06.334 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 3 ms to get response, and 6 ms overall
17-03-18 03:43:06.334 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:43:06.334 -07 000000487 INF: FPGA: Recv ZPIEZORD 31789
17-03-18 03:43:06.344 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 03:43:06.344 -07 000000610 INF: Z Motor: Piezo is near 47.9 V (nominally 0 to 100 V), expect near 57.1 V, since DAC is at 5.707 V. Piezo Error = -9.2 V.
17-03-18 03:43:06.344 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.2 um, Read 10 ADC samples: Avg = 35942 (-170.3 uncal um), Error = 0.9 uncal um, Median = 35942 (-170.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 35934 (-170.3 uncal um), Max = 35949 (-170.4 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 03:43:06.344 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35942, posNoise = 7, negNoise = 8
17-03-18 03:43:06.344 -07 000000610 INF: Z Motor: After move to -0.171202, error = -0.000021, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:43:06.344 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-18 03:43:06.344 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:43:06.344 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:43:06.344 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:43:06.344 -07 000000479 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:43:06.344 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 03:43:06.344 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 03:43:06.344 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 03:43:06.344 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:43:06.344 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 03:43:06.344 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 03:43:06.344 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 03:43:06.344 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 03:43:06.354 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 03:43:06.354 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 03:43:06.354 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 03:43:06.354 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 03:43:06.364 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-18 03:43:06.364 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 03:43:06.364 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-18 03:43:06.364 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 03:43:06.364 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 410 410 197 197 37576 150\n [Camera]
17-03-18 03:43:06.564 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 03:43:06.604 -07 000000608 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 03:43:06.604 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 115. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1671, R2=1741, Total=3412. Warn if over 250 bubbles per interval.
17-03-18 03:43:06.974 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 602
17-03-18 03:43:06.974 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 602
17-03-18 03:43:06.974 -07 000000437 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:43:06.974 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 602
17-03-18 03:43:06.974 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 602
17-03-18 03:43:06.974 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:43:06.984 -07 000000437 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:43:06.984 -07 000000437 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-18 03:43:06.984 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:43:06.984 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2199785120, 0x0, 418435064) start.
17-03-18 03:43:07.164 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37576 795
17-03-18 03:43:07.314 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP turning grn on 945
17-03-18 03:43:07.354 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2199785120, 0x0, 418435064) end. Duration was 367 ms.
17-03-18 03:43:07.354 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 368 ms.
17-03-18 03:43:07.354 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:43:07.354 -07 000000437 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 372 ms.
17-03-18 03:43:07.354 -07 000000437 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 373 ms.
17-03-18 03:43:07.354 -07 000000437 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:43:07.354 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 03:43:07.354 -07 000000437 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 03:43:07.354 -07 000000437 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-18 03:43:07.364 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-18 03:43:07.514 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1142
17-03-18 03:43:07.514 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1142
17-03-18 03:43:07.514 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:43:07.514 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1142
17-03-18 03:43:07.514 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1142
17-03-18 03:43:07.514 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:43:07.514 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 03:43:07.514 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:43:07.514 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:43:07.514 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start.
17-03-18 03:43:07.704 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP 1334
17-03-18 03:43:07.704 -07 000000487 INF: FPGA: Recv CAMDBLSNAP
17-03-18 03:43:07.704 -07 000000610 INF: FPGA: 'CAMDBLSNAP 410 410 197 197 37576 150' command took 2 ms to send, 1336 ms to get response, and 1341 ms overall
17-03-18 03:43:07.704 -07 000000610 INF: Skipping AutoFocus in Tile 4: adopting Best-Z from the cache: -0.171529
17-03-18 03:43:07.704 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 62.4026 mm, moving Z to -0.17153 mm
17-03-18 03:43:07.704 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 03:43:07.714 -07 000000382 INF: Z Motor: Entering MoveAbsStepped (DAC = 37470, sync = True, waitForSettling = False)
17-03-18 03:43:07.714 -07 000000382 INF: Z Motor: Moving to -0.171527 mm, started at -0.171222 mm, distance = -0.30 um
17-03-18 03:43:07.714 -07 000000382 INF: FPGA: Xmit ZDACW 37470\n [Z Motor]
17-03-18 03:43:07.714 -07 000000462 INF: Y Motor: Entering MoveAbsStepped (target = 99844 steps, sync = True, waitForSettling = True)
17-03-18 03:43:07.714 -07 000000462 INF: Y Motor: Moving to 62.4026 mm, started at 61.5640 mm, delta = 0.8386 mm
17-03-18 03:43:07.714 -07 000000479 INF: FPGA: Recv ZDACW
17-03-18 03:43:07.724 -07 000000382 INF: FPGA: 'ZDACW 37470' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 03:43:07.724 -07 000000382 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:43:07.734 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:43:07.894 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 380 ms.
17-03-18 03:43:07.894 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-18 03:43:07.894 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:43:07.904 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 381 ms.
17-03-18 03:43:07.904 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 381 ms.
17-03-18 03:43:07.904 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:43:07.904 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 03:43:07.904 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-18 03:43:08.014 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 113 ms.
17-03-18 03:43:08.024 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 504 ms.
17-03-18 03:43:08.024 -07 000000512 INF: FPGA: Recv ZDACR 37470
17-03-18 03:43:08.024 -07 000000512 INF: FPGA: Recv YRDPOS 126083
17-03-18 03:43:08.024 -07 000000382 INF: FPGA: 'ZDACR' command took 0 ms to send, 295 ms to get response, and 305 ms overall
17-03-18 03:43:08.024 -07 000000382 INF: Z Motor: MoveAbsStepped took 314 ms (did NOT wait for settling yet))
17-03-18 03:43:08.024 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 285 ms to get response, and 313 ms overall
17-03-18 03:43:08.024 -07 000000462 INF: Y Motor: Encoder = 126083 = motor step 98502.3 = 61.5640 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:43:08.024 -07 000000462 INF: Y Motor: Last commanded position = 61.5726 mm (98516.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 03:43:08.024 -07 000000462 INF: Y Motor: Moving 1342 steps-18
17-03-18 03:43:08.024 -07 000000462 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 03:43:08.404 -07 000000512 INF: FPGA: Recv YMVTILE
17-03-18 03:43:08.404 -07 000000462 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 375 ms to get response, and 378 ms overall
17-03-18 03:43:08.454 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:43:08.454 -07 000000606 INF: FPGA: Recv YRDPOS 127786
17-03-18 03:43:08.464 -07 000000462 INF: FPGA: 'YRDPOS' command took 1 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 03:43:08.464 -07 000000462 INF: Y Motor: Encoder = 127786 = motor step 99832.8 = 62.3955 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:43:08.464 -07 000000462 INF: Y Motor: Position error before settling (table move) = -15 encoder counts (-0.007 mm)
17-03-18 03:43:08.464 -07 000000462 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 378 ms, distance = 0.839 mm, average velocity = 2.219 mm/sec
17-03-18 03:43:09.414 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:43:09.414 -07 000000512 INF: FPGA: Recv YRDPOS 127786
17-03-18 03:43:09.424 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:43:09.424 -07 000000462 INF: Y Motor: Encoder = 127786 = motor step 99832.8 = 62.3955 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:43:09.444 -07 000000462 INF: Y Motor: After move to 62.402607, error = -0.007099, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 03:43:09.444 -07 000000462 INF: Y Motor: Position error after settling (table move) = -15 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 03:43:09.444 -07 000000462 INF: Y Motor: Moved to 62.3955 after 1736 ms (table move)
17-03-18 03:43:09.454 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.171527 mm (DAC = 37470)
17-03-18 03:43:09.454 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:09.454 -07 000000606 INF: FPGA: Recv ZSGSRD 35999
17-03-18 03:43:09.464 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:09.464 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:09.464 -07 000000462 INF: FPGA: Recv ZSGSRD 35990
17-03-18 03:43:09.474 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:09.474 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:09.474 -07 000000382 INF: FPGA: Recv ZSGSRD 35987
17-03-18 03:43:09.484 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:09.484 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:09.484 -07 000000462 INF: FPGA: Recv ZSGSRD 35992
17-03-18 03:43:09.494 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:09.494 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:09.494 -07 000000606 INF: FPGA: Recv ZSGSRD 35988
17-03-18 03:43:09.504 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:09.504 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:09.504 -07 000000462 INF: FPGA: Recv ZSGSRD 35991
17-03-18 03:43:09.514 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:09.514 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:09.514 -07 000000382 INF: FPGA: Recv ZSGSRD 35989
17-03-18 03:43:09.524 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:09.524 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:09.524 -07 000000382 INF: FPGA: Recv ZSGSRD 35995
17-03-18 03:43:09.534 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:09.534 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:09.534 -07 000000462 INF: FPGA: Recv ZSGSRD 35994
17-03-18 03:43:09.544 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:09.544 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:09.544 -07 000000606 INF: FPGA: Recv ZSGSRD 35989
17-03-18 03:43:09.554 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:09.554 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:43:09.554 -07 000000382 INF: FPGA: Recv ZPIEZORD 31888
17-03-18 03:43:09.564 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:09.564 -07 000000610 INF: Z Motor: Piezo is near 48.1 V (nominally 0 to 100 V), expect near 57.2 V, since DAC is at 5.718 V. Piezo Error = -9.1 V.
17-03-18 03:43:09.564 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.5 um, Read 10 ADC samples: Avg = 35991 (-170.7 uncal um), Error = 0.9 uncal um, Median = 35990 (-170.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35987 (-170.6 uncal um), Max = 35999 (-170.7 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 03:43:09.564 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35991, posNoise = 8, negNoise = 4
17-03-18 03:43:09.564 -07 000000610 INF: Z Motor: After move to -0.171527, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:43:09.564 -07 000000610 INF: Z Motor: Settle wait time = 1739 ms, measure time = 110 ms (allowed 150 ms), total time = 1849 ms
17-03-18 03:43:09.564 -07 000000610 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-18 03:43:09.604 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1891 ms
17-03-18 03:43:09.604 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 03:43:09.604 -07 000000610 INF: ------------ Scan Snapping tile 4 at Y-position 62.3955078125, Z-position -0.171537171205254. ----------
17-03-18 03:43:09.604 -07 000000610 INF: Cycle	116	Tile	4	Exposure Settings		A	410	G	197	T	197	C	410
17-03-18 03:43:09.604 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37294, sync = True, waitForSettling = True)
17-03-18 03:43:09.604 -07 000000610 INF: Z Motor: Moving to -0.170721 mm, started at -0.171537 mm, distance = 0.82 um
17-03-18 03:43:09.604 -07 000000610 INF: FPGA: Xmit ZDACW 37294\n [Z Motor]
17-03-18 03:43:09.604 -07 000000512 INF: FPGA: Recv ZDACW
17-03-18 03:43:09.614 -07 000000610 INF: FPGA: 'ZDACW 37294' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 03:43:09.614 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:43:09.614 -07 000000462 INF: FPGA: Recv ZDACR 37294
17-03-18 03:43:09.624 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:09.624 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 03:43:09.774 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:09.774 -07 000000606 INF: FPGA: Recv ZSGSRD 35877
17-03-18 03:43:09.784 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:09.794 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:09.794 -07 000000606 INF: FPGA: Recv ZSGSRD 35865
17-03-18 03:43:09.804 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 03:43:09.804 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:09.804 -07 000000382 INF: FPGA: Recv ZSGSRD 35860
17-03-18 03:43:09.814 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:09.814 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:09.814 -07 000000512 INF: FPGA: Recv ZSGSRD 35868
17-03-18 03:43:09.824 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:09.824 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:09.824 -07 000000382 INF: FPGA: Recv ZSGSRD 35870
17-03-18 03:43:09.834 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:09.834 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:09.834 -07 000000512 INF: FPGA: Recv ZSGSRD 35858
17-03-18 03:43:09.844 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:09.844 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:09.844 -07 000000382 INF: FPGA: Recv ZSGSRD 35871
17-03-18 03:43:09.854 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:09.854 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:09.854 -07 000000382 INF: FPGA: Recv ZSGSRD 35875
17-03-18 03:43:09.864 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:09.864 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:09.864 -07 000000462 INF: FPGA: Recv ZSGSRD 35859
17-03-18 03:43:09.874 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:09.874 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:09.874 -07 000000512 INF: FPGA: Recv ZSGSRD 35866
17-03-18 03:43:09.884 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:09.884 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:43:09.884 -07 000000512 INF: FPGA: Recv ZPIEZORD 31749
17-03-18 03:43:09.894 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:09.894 -07 000000610 INF: Z Motor: Piezo is near 47.8 V (nominally 0 to 100 V), expect near 56.9 V, since DAC is at 5.691 V. Piezo Error = -9.1 V.
17-03-18 03:43:09.894 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.7 um, Read 10 ADC samples: Avg = 35867 (-169.9 uncal um), Error = 0.9 uncal um, Median = 35867 (-169.9 uncal um), StdDev = 7 (0.0 uncal um), Range = 19 (0.1 uncal um), Min = 35858 (-169.8 uncal um), Max = 35877 (-169.9 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-18 03:43:09.894 -07 000000610 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35867, posNoise = 10, negNoise = 9
17-03-18 03:43:09.894 -07 000000610 INF: Z Motor: After move to -0.170721, error = -0.000020, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:43:09.894 -07 000000610 INF: Z Motor: MoveAbsStepped took 285 ms)
17-03-18 03:43:09.894 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:43:09.894 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:43:09.894 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:43:09.894 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:43:09.894 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 03:43:09.894 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:43:09.894 -07 000000606 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 03:43:09.894 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 03:43:09.894 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 03:43:09.894 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 03:43:09.894 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 03:43:09.894 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 03:43:09.904 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 03:43:09.904 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 03:43:09.904 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 03:43:09.904 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 03:43:09.904 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 03:43:09.904 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 03:43:09.914 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 03:43:09.914 -07 000000606 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 03:43:09.914 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 410 410 197 197 37470 150\n [Camera]
17-03-18 03:43:10.104 -07 000000625 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 116, FrontChillerTemperature: 3.999021,
17-03-18 03:43:10.114 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 03:43:10.524 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 602
17-03-18 03:43:10.524 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 602
17-03-18 03:43:10.524 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:43:10.524 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 602
17-03-18 03:43:10.524 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 602
17-03-18 03:43:10.534 -07 000000611 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:43:10.534 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:43:10.534 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-18 03:43:10.534 -07 000000611 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:43:10.534 -07 000000611 INF: Camera: sBCa_ReadImage(785074704, 2199785120, 0x0, 418435064) start.
17-03-18 03:43:10.714 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37470 795
17-03-18 03:43:10.864 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP turning grn on 945
17-03-18 03:43:10.914 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 378 ms.
17-03-18 03:43:10.914 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-18 03:43:10.914 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:43:10.914 -07 000000611 INF: Camera: sBCa_ReadImage(785074704, 2199785120, 0x0, 418435064) end. Duration was 371 ms.
17-03-18 03:43:10.914 -07 000000611 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 373 ms.
17-03-18 03:43:10.914 -07 000000611 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:43:10.914 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 03:43:10.914 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-18 03:43:10.914 -07 000000611 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 03:43:10.924 -07 000000611 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-18 03:43:11.064 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1142
17-03-18 03:43:11.064 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1142
17-03-18 03:43:11.064 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:43:11.064 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1142
17-03-18 03:43:11.064 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1142
17-03-18 03:43:11.064 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:43:11.064 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:43:11.064 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) start.
17-03-18 03:43:11.074 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:43:11.074 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 03:43:11.254 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP 1334
17-03-18 03:43:11.254 -07 000000012 INF: FPGA: Recv CAMDBLSNAP
17-03-18 03:43:11.254 -07 000000610 INF: FPGA: 'CAMDBLSNAP 410 410 197 197 37470 150' command took 2 ms to send, 1335 ms to get response, and 1341 ms overall
17-03-18 03:43:11.254 -07 000000610 INF: Skipping AutoFocus in Tile 5: adopting Best-Z from the cache: -0.171207
17-03-18 03:43:11.254 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 63.2326 mm, moving Z to -0.17121 mm
17-03-18 03:43:11.254 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 03:43:11.264 -07 000000437 INF: Y Motor: Entering MoveAbsStepped (target = 101172 steps, sync = True, waitForSettling = True)
17-03-18 03:43:11.264 -07 000000437 INF: Y Motor: Moving to 63.2326 mm, started at 62.3955 mm, delta = 0.8371 mm
17-03-18 03:43:11.264 -07 000000437 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:43:11.264 -07 000000611 INF: Z Motor: Entering MoveAbsStepped (DAC = 37400, sync = True, waitForSettling = False)
17-03-18 03:43:11.264 -07 000000611 INF: Z Motor: Moving to -0.171206 mm, started at -0.170741 mm, distance = -0.47 um
17-03-18 03:43:11.264 -07 000000012 INF: FPGA: Recv YRDPOS 127786
17-03-18 03:43:11.274 -07 000000437 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:11.274 -07 000000437 INF: Y Motor: Encoder = 127786 = motor step 99832.8 = 62.3955 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:43:11.274 -07 000000437 INF: Y Motor: Last commanded position = 62.4026 mm (99844.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 03:43:11.274 -07 000000437 INF: Y Motor: Moving 1339 steps-15
17-03-18 03:43:11.274 -07 000000611 INF: FPGA: Xmit ZDACW 37400\n [Z Motor]
17-03-18 03:43:11.274 -07 000000606 INF: FPGA: Recv ZDACW
17-03-18 03:43:11.284 -07 000000611 INF: FPGA: 'ZDACW 37400' command took 3 ms to send, 0 ms to get response, and 18 ms overall
17-03-18 03:43:11.284 -07 000000437 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 03:43:11.294 -07 000000611 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:43:11.294 -07 000000474 INF: FPGA: Recv ZDACR 37400
17-03-18 03:43:11.304 -07 000000611 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 03:43:11.304 -07 000000611 INF: Z Motor: MoveAbsStepped took 38 ms (did NOT wait for settling yet))
17-03-18 03:43:11.444 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) end. Duration was 379 ms.
17-03-18 03:43:11.444 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-18 03:43:11.444 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:43:11.454 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 03:43:11.454 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 377 ms.
17-03-18 03:43:11.454 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-18 03:43:11.454 -07 000000625 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:43:11.454 -07 000000625 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:43:11.454 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-18 03:43:11.464 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-18 03:43:11.604 -07 000000382 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 03:43:11.604 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 115. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1671, R2=1741, Total=3412. Warn if over 250 bubbles per interval.
17-03-18 03:43:11.654 -07 000000606 INF: FPGA: Recv YMVTILE
17-03-18 03:43:11.654 -07 000000437 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 386 ms overall
17-03-18 03:43:11.704 -07 000000437 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:43:11.704 -07 000000611 INF: FPGA: Recv YRDPOS 129482
17-03-18 03:43:11.714 -07 000000437 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 03:43:11.714 -07 000000437 INF: Y Motor: Encoder = 129482 = motor step 101157.8 = 63.2236 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:43:11.714 -07 000000437 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-18 03:43:11.714 -07 000000437 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.837 mm, average velocity = 2.157 mm/sec
17-03-18 03:43:12.664 -07 000000437 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:43:12.664 -07 000000625 INF: FPGA: Recv YRDPOS 129483
17-03-18 03:43:12.674 -07 000000437 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:43:12.674 -07 000000437 INF: Y Motor: Encoder = 129483 = motor step 101158.6 = 63.2241 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:43:12.694 -07 000000437 INF: Y Motor: After move to 63.232609, error = -0.008488, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 03:43:12.694 -07 000000437 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 03:43:12.694 -07 000000437 INF: Y Motor: Moved to 63.2241 after 1439 ms (table move)
17-03-18 03:43:12.704 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.171206 mm (DAC = 37400)
17-03-18 03:43:12.704 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:12.704 -07 000000611 INF: FPGA: Recv ZSGSRD 35937
17-03-18 03:43:12.714 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 03:43:12.714 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:12.714 -07 000000581 INF: FPGA: Recv ZSGSRD 35936
17-03-18 03:43:12.724 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:12.724 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:12.724 -07 000000437 INF: FPGA: Recv ZSGSRD 35948
17-03-18 03:43:12.734 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:12.734 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:12.734 -07 000000611 INF: FPGA: Recv ZSGSRD 35930
17-03-18 03:43:12.744 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:12.744 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:12.744 -07 000000581 INF: FPGA: Recv ZSGSRD 35941
17-03-18 03:43:12.754 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:12.754 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:12.754 -07 000000611 INF: FPGA: Recv ZSGSRD 35942
17-03-18 03:43:12.764 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:12.764 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:12.764 -07 000000437 INF: FPGA: Recv ZSGSRD 35940
17-03-18 03:43:12.774 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:12.774 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:12.774 -07 000000611 INF: FPGA: Recv ZSGSRD 35938
17-03-18 03:43:12.784 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:12.784 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:12.784 -07 000000437 INF: FPGA: Recv ZSGSRD 35937
17-03-18 03:43:12.794 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:12.794 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:12.794 -07 000000611 INF: FPGA: Recv ZSGSRD 35943
17-03-18 03:43:12.804 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:12.804 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:43:12.804 -07 000000611 INF: FPGA: Recv ZPIEZORD 31827
17-03-18 03:43:12.814 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:12.814 -07 000000610 INF: Z Motor: Piezo is near 48.0 V (nominally 0 to 100 V), expect near 57.1 V, since DAC is at 5.707 V. Piezo Error = -9.1 V.
17-03-18 03:43:12.814 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.2 um, Read 10 ADC samples: Avg = 35939 (-170.3 uncal um), Error = 0.9 uncal um, Median = 35939 (-170.3 uncal um), StdDev = 5 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 35930 (-170.3 uncal um), Max = 35948 (-170.4 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-18 03:43:12.814 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35939, posNoise = 9, negNoise = 9
17-03-18 03:43:12.814 -07 000000610 INF: Z Motor: After move to -0.171206, error = 0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:43:12.814 -07 000000610 INF: Z Motor: Settle wait time = 1440 ms, measure time = 108 ms (allowed 150 ms), total time = 1548 ms
17-03-18 03:43:12.814 -07 000000610 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-18 03:43:12.864 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1602 ms
17-03-18 03:43:12.864 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 03:43:12.864 -07 000000610 INF: ------------ Scan Snapping tile 5 at Y-position 63.22412109375, Z-position -0.171203112173882. ----------
17-03-18 03:43:12.864 -07 000000610 INF: Cycle	116	Tile	5	Exposure Settings		A	410	G	197	T	197	C	410
17-03-18 03:43:12.864 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37223, sync = True, waitForSettling = True)
17-03-18 03:43:12.864 -07 000000610 INF: Z Motor: Moving to -0.170396 mm, started at -0.171203 mm, distance = 0.81 um
17-03-18 03:43:12.864 -07 000000610 INF: FPGA: Xmit ZDACW 37223\n [Z Motor]
17-03-18 03:43:12.864 -07 000000581 INF: FPGA: Recv ZDACW
17-03-18 03:43:12.874 -07 000000610 INF: FPGA: 'ZDACW 37223' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 03:43:12.874 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:43:12.874 -07 000000437 INF: FPGA: Recv ZDACR 37223
17-03-18 03:43:12.884 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:12.884 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 03:43:13.034 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:13.034 -07 000000625 INF: FPGA: Recv ZSGSRD 35808
17-03-18 03:43:13.044 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:43:13.044 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:13.044 -07 000000437 INF: FPGA: Recv ZSGSRD 35819
17-03-18 03:43:13.054 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:13.054 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:13.054 -07 000000581 INF: FPGA: Recv ZSGSRD 35815
17-03-18 03:43:13.064 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:13.064 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:13.064 -07 000000437 INF: FPGA: Recv ZSGSRD 35816
17-03-18 03:43:13.074 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:13.074 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:13.074 -07 000000581 INF: FPGA: Recv ZSGSRD 35818
17-03-18 03:43:13.084 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:13.084 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:13.084 -07 000000625 INF: FPGA: Recv ZSGSRD 35811
17-03-18 03:43:13.094 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:13.094 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:13.094 -07 000000581 INF: FPGA: Recv ZSGSRD 35817
17-03-18 03:43:13.104 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:13.104 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:13.104 -07 000000581 INF: FPGA: Recv ZSGSRD 35818
17-03-18 03:43:13.114 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:13.114 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:13.114 -07 000000611 INF: FPGA: Recv ZSGSRD 35815
17-03-18 03:43:13.124 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:13.124 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:13.124 -07 000000437 INF: FPGA: Recv ZSGSRD 35821
17-03-18 03:43:13.134 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:13.134 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:43:13.134 -07 000000581 INF: FPGA: Recv ZPIEZORD 31635
17-03-18 03:43:13.144 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:13.144 -07 000000610 INF: Z Motor: Piezo is near 47.6 V (nominally 0 to 100 V), expect near 56.8 V, since DAC is at 5.680 V. Piezo Error = -9.2 V.
17-03-18 03:43:13.144 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.4 um, Read 10 ADC samples: Avg = 35816 (-169.5 uncal um), Error = 0.9 uncal um, Median = 35816 (-169.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 35808 (-169.5 uncal um), Max = 35821 (-169.6 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 03:43:13.144 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35816, posNoise = 5, negNoise = 8
17-03-18 03:43:13.144 -07 000000610 INF: Z Motor: After move to -0.170396, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:43:13.144 -07 000000610 INF: Z Motor: MoveAbsStepped took 274 ms)
17-03-18 03:43:13.144 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:43:13.144 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:43:13.144 -07 000000437 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:43:13.144 -07 000000581 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:43:13.144 -07 000000611 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 03:43:13.144 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 03:43:13.144 -07 000000625 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 03:43:13.144 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:43:13.144 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 03:43:13.144 -07 000000611 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 03:43:13.144 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 03:43:13.144 -07 000000625 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 03:43:13.154 -07 000000611 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 03:43:13.154 -07 000000611 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 03:43:13.154 -07 000000625 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 03:43:13.154 -07 000000625 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 03:43:13.164 -07 000000611 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-18 03:43:13.164 -07 000000611 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 03:43:13.164 -07 000000625 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 03:43:13.164 -07 000000625 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 03:43:13.174 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 410 410 197 197 37400 150\n [Camera]
17-03-18 03:43:13.374 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 03:43:13.784 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 602
17-03-18 03:43:13.784 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 602
17-03-18 03:43:13.784 -07 000000479 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:43:13.784 -07 000000479 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:43:13.784 -07 000000479 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 03:43:13.784 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 602
17-03-18 03:43:13.784 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 602
17-03-18 03:43:13.784 -07 000000625 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:43:13.784 -07 000000625 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:43:13.784 -07 000000625 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-18 03:43:13.974 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37400 795
17-03-18 03:43:14.124 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP turning grn on 945
17-03-18 03:43:14.154 -07 000000625 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 374 ms.
17-03-18 03:43:14.154 -07 000000625 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-18 03:43:14.154 -07 000000625 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:43:14.164 -07 000000479 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 378 ms.
17-03-18 03:43:14.164 -07 000000479 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-18 03:43:14.164 -07 000000479 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:43:14.164 -07 000000625 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 03:43:14.164 -07 000000479 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 03:43:14.164 -07 000000479 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-18 03:43:14.174 -07 000000625 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-18 03:43:14.324 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1142
17-03-18 03:43:14.324 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1142
17-03-18 03:43:14.324 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:43:14.324 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:43:14.324 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-18 03:43:14.324 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1142
17-03-18 03:43:14.324 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1142
17-03-18 03:43:14.324 -07 000000487 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:43:14.324 -07 000000487 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:43:14.324 -07 000000487 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-18 03:43:14.514 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP 1334
17-03-18 03:43:14.514 -07 000000437 INF: FPGA: Recv CAMDBLSNAP
17-03-18 03:43:14.514 -07 000000610 INF: FPGA: 'CAMDBLSNAP 410 410 197 197 37400 150' command took 2 ms to send, 1332 ms to get response, and 1341 ms overall
17-03-18 03:43:14.514 -07 000000610 INF: Skipping AutoFocus in Tile 6: adopting Best-Z from the cache: -0.170872
17-03-18 03:43:14.514 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.0626 mm, moving Z to -0.17087 mm
17-03-18 03:43:14.514 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 03:43:14.514 -07 000000569 INF: Z Motor: Entering MoveAbsStepped (DAC = 37327, sync = True, waitForSettling = False)
17-03-18 03:43:14.514 -07 000000569 INF: Z Motor: Moving to -0.170872 mm, started at -0.170413 mm, distance = -0.46 um
17-03-18 03:43:14.514 -07 000000569 INF: FPGA: Xmit ZDACW 37327\n [Z Motor]
17-03-18 03:43:14.514 -07 000000608 INF: Y Motor: Entering MoveAbsStepped (target = 102500 steps, sync = True, waitForSettling = True)
17-03-18 03:43:14.514 -07 000000608 INF: Y Motor: Moving to 64.0626 mm, started at 63.2241 mm, delta = 0.8385 mm
17-03-18 03:43:14.514 -07 000000581 INF: FPGA: Recv ZDACW
17-03-18 03:43:14.524 -07 000000569 INF: FPGA: 'ZDACW 37327' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 03:43:14.524 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:43:14.524 -07 000000474 INF: FPGA: Recv YRDPOS 129483
17-03-18 03:43:14.534 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-18 03:43:14.534 -07 000000569 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:43:14.534 -07 000000608 INF: Y Motor: Encoder = 129483 = motor step 101158.6 = 63.2241 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:43:14.534 -07 000000608 INF: Y Motor: Last commanded position = 63.2326 mm (101172.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 03:43:14.534 -07 000000608 INF: Y Motor: Moving 1342 steps-18
17-03-18 03:43:14.534 -07 000000581 INF: FPGA: Recv ZDACR 37327
17-03-18 03:43:14.544 -07 000000569 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 03:43:14.544 -07 000000569 INF: Z Motor: MoveAbsStepped took 23 ms (did NOT wait for settling yet))
17-03-18 03:43:14.544 -07 000000608 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 03:43:14.704 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 383 ms.
17-03-18 03:43:14.704 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-18 03:43:14.704 -07 000000625 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:43:14.704 -07 000000487 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 382 ms.
17-03-18 03:43:14.704 -07 000000487 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 383 ms.
17-03-18 03:43:14.704 -07 000000487 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:43:14.714 -07 000000625 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 03:43:14.714 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-18 03:43:14.714 -07 000000487 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 03:43:14.724 -07 000000487 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 03:43:14.914 -07 000000474 INF: FPGA: Recv YMVTILE
17-03-18 03:43:14.914 -07 000000608 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 388 ms overall
17-03-18 03:43:14.964 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:43:14.964 -07 000000569 INF: FPGA: Recv YRDPOS 131188
17-03-18 03:43:14.974 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 03:43:14.974 -07 000000608 INF: Y Motor: Encoder = 131188 = motor step 102490.6 = 64.0566 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:43:14.974 -07 000000608 INF: Y Motor: Position error before settling (table move) = -12 encoder counts (-0.006 mm)
17-03-18 03:43:14.974 -07 000000608 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.838 mm, average velocity = 2.161 mm/sec
17-03-18 03:43:15.484 -07 000000606 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 116, FrontChillerTemperature: 4.015368,
17-03-18 03:43:15.924 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:43:15.924 -07 000000606 INF: FPGA: Recv YRDPOS 131188
17-03-18 03:43:15.934 -07 000000608 INF: FPGA: 'YRDPOS' command took 1 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:43:15.934 -07 000000608 INF: Y Motor: Encoder = 131188 = motor step 102490.6 = 64.0566 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:43:15.954 -07 000000608 INF: Y Motor: After move to 64.062607, error = -0.005966, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 03:43:15.954 -07 000000608 INF: Y Motor: Position error after settling (table move) = -12 encoder counts (-0.006 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 03:43:15.954 -07 000000608 INF: Y Motor: Moved to 64.0566 after 1439 ms (table move)
17-03-18 03:43:15.954 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.170872 mm (DAC = 37327)
17-03-18 03:43:15.964 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:15.964 -07 000000608 INF: FPGA: Recv ZSGSRD 35889
17-03-18 03:43:15.974 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:43:15.974 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:15.974 -07 000000608 INF: FPGA: Recv ZSGSRD 35890
17-03-18 03:43:15.984 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:15.984 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:15.984 -07 000000608 INF: FPGA: Recv ZSGSRD 35893
17-03-18 03:43:15.994 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:15.994 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:15.994 -07 000000581 INF: FPGA: Recv ZSGSRD 35895
17-03-18 03:43:16.004 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:16.004 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:16.004 -07 000000479 INF: FPGA: Recv ZSGSRD 35889
17-03-18 03:43:16.014 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:16.014 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:16.014 -07 000000581 INF: FPGA: Recv ZSGSRD 35886
17-03-18 03:43:16.024 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:16.024 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:16.024 -07 000000479 INF: FPGA: Recv ZSGSRD 35887
17-03-18 03:43:16.034 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:43:16.034 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:16.034 -07 000000581 INF: FPGA: Recv ZSGSRD 35886
17-03-18 03:43:16.044 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:16.044 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:16.044 -07 000000625 INF: FPGA: Recv ZSGSRD 35882
17-03-18 03:43:16.054 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:16.054 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:16.054 -07 000000487 INF: FPGA: Recv ZSGSRD 35893
17-03-18 03:43:16.064 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:16.064 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:43:16.064 -07 000000479 INF: FPGA: Recv ZPIEZORD 31750
17-03-18 03:43:16.074 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:16.074 -07 000000610 INF: Z Motor: Piezo is near 47.8 V (nominally 0 to 100 V), expect near 57.0 V, since DAC is at 5.696 V. Piezo Error = -9.1 V.
17-03-18 03:43:16.074 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.9 um, Read 10 ADC samples: Avg = 35889 (-170.0 uncal um), Error = 0.9 uncal um, Median = 35889 (-170.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 35882 (-170.0 uncal um), Max = 35895 (-170.0 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 03:43:16.074 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35889, posNoise = 6, negNoise = 7
17-03-18 03:43:16.074 -07 000000610 INF: Z Motor: After move to -0.170872, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:43:16.074 -07 000000610 INF: Z Motor: Settle wait time = 1443 ms, measure time = 111 ms (allowed 150 ms), total time = 1554 ms
17-03-18 03:43:16.074 -07 000000610 INF: Z Motor: Waiting extra 39 ms after reading position to reach expected total of 150 ms
17-03-18 03:43:16.114 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1595 ms
17-03-18 03:43:16.114 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 03:43:16.114 -07 000000610 INF: ------------ Scan Snapping tile 6 at Y-position 64.056640625, Z-position -0.170881901566794. ----------
17-03-18 03:43:16.114 -07 000000610 INF: Cycle	116	Tile	6	Exposure Settings		A	410	G	197	T	197	C	410
17-03-18 03:43:16.114 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37150, sync = True, waitForSettling = True)
17-03-18 03:43:16.114 -07 000000610 INF: Z Motor: Moving to -0.170062 mm, started at -0.170882 mm, distance = 0.82 um
17-03-18 03:43:16.114 -07 000000610 INF: FPGA: Xmit ZDACW 37150\n [Z Motor]
17-03-18 03:43:16.114 -07 000000625 INF: FPGA: Recv ZDACW
17-03-18 03:43:16.124 -07 000000610 INF: FPGA: 'ZDACW 37150' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 03:43:16.124 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:43:16.124 -07 000000487 INF: FPGA: Recv ZDACR 37150
17-03-18 03:43:16.134 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:16.134 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 03:43:16.284 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:16.284 -07 000000487 INF: FPGA: Recv ZSGSRD 35766
17-03-18 03:43:16.294 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:16.294 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:16.294 -07 000000581 INF: FPGA: Recv ZSGSRD 35766
17-03-18 03:43:16.304 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:16.304 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:16.304 -07 000000581 INF: FPGA: Recv ZSGSRD 35760
17-03-18 03:43:16.314 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:16.314 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:16.314 -07 000000625 INF: FPGA: Recv ZSGSRD 35765
17-03-18 03:43:16.324 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:16.324 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:16.324 -07 000000479 INF: FPGA: Recv ZSGSRD 35770
17-03-18 03:43:16.334 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:16.334 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:16.334 -07 000000479 INF: FPGA: Recv ZSGSRD 35762
17-03-18 03:43:16.344 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:16.344 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:16.344 -07 000000581 INF: FPGA: Recv ZSGSRD 35767
17-03-18 03:43:16.354 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:16.354 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:16.354 -07 000000487 INF: FPGA: Recv ZSGSRD 35765
17-03-18 03:43:16.364 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:16.364 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:16.364 -07 000000487 INF: FPGA: Recv ZSGSRD 35763
17-03-18 03:43:16.374 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:16.374 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:16.374 -07 000000625 INF: FPGA: Recv ZSGSRD 35762
17-03-18 03:43:16.384 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:16.384 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:43:16.384 -07 000000581 INF: FPGA: Recv ZPIEZORD 31607
17-03-18 03:43:16.394 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:16.394 -07 000000610 INF: Z Motor: Piezo is near 47.5 V (nominally 0 to 100 V), expect near 56.7 V, since DAC is at 5.669 V. Piezo Error = -9.2 V.
17-03-18 03:43:16.394 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.1 um, Read 10 ADC samples: Avg = 35765 (-169.2 uncal um), Error = 0.9 uncal um, Median = 35765 (-169.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35760 (-169.2 uncal um), Max = 35770 (-169.2 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 03:43:16.394 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35765, posNoise = 5, negNoise = 5
17-03-18 03:43:16.394 -07 000000610 INF: Z Motor: After move to -0.170062, error = -0.000024, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:43:16.394 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-18 03:43:16.394 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:43:16.394 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:43:16.394 -07 000000581 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:43:16.394 -07 000000625 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 03:43:16.394 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:43:16.394 -07 000000479 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:43:16.394 -07 000000487 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 03:43:16.394 -07 000000487 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 03:43:16.394 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 03:43:16.394 -07 000000625 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 03:43:16.394 -07 000000487 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-18 03:43:16.394 -07 000000487 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 03:43:16.404 -07 000000625 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 5 ms.
17-03-18 03:43:16.404 -07 000000625 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 03:43:16.404 -07 000000487 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 03:43:16.404 -07 000000487 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 03:43:16.414 -07 000000487 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 03:43:16.414 -07 000000487 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 03:43:16.414 -07 000000625 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 03:43:16.414 -07 000000625 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 23 ms.
17-03-18 03:43:16.424 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 410 410 197 197 37327 150\n [Camera]
17-03-18 03:43:16.604 -07 000000487 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 03:43:16.604 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 115. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1671, R2=1741, Total=3412. Warn if over 250 bubbles per interval.
17-03-18 03:43:16.614 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 03:43:17.034 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 605
17-03-18 03:43:17.034 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 605
17-03-18 03:43:17.034 -07 000000487 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:43:17.034 -07 000000487 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:43:17.034 -07 000000487 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) start.
17-03-18 03:43:17.034 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 605
17-03-18 03:43:17.034 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 605
17-03-18 03:43:17.034 -07 000000479 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:43:17.034 -07 000000479 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:43:17.034 -07 000000479 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) start.
17-03-18 03:43:17.224 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37327 795
17-03-18 03:43:17.374 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning grn on 945
17-03-18 03:43:17.414 -07 000000487 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) end. Duration was 376 ms.
17-03-18 03:43:17.414 -07 000000487 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-18 03:43:17.414 -07 000000487 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:43:17.414 -07 000000479 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) end. Duration was 375 ms.
17-03-18 03:43:17.414 -07 000000479 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-18 03:43:17.414 -07 000000479 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:43:17.414 -07 000000487 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 03:43:17.414 -07 000000487 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-18 03:43:17.414 -07 000000479 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 03:43:17.424 -07 000000479 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-18 03:43:17.564 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1142
17-03-18 03:43:17.574 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1142
17-03-18 03:43:17.574 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:43:17.574 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:43:17.574 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-18 03:43:17.574 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1142
17-03-18 03:43:17.574 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1142
17-03-18 03:43:17.574 -07 000000487 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:43:17.574 -07 000000487 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:43:17.574 -07 000000487 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) start.
17-03-18 03:43:17.764 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP 1335
17-03-18 03:43:17.764 -07 000000606 INF: FPGA: Recv CAMDBLSNAP
17-03-18 03:43:17.764 -07 000000610 INF: FPGA: 'CAMDBLSNAP 410 410 197 197 37327 150' command took 2 ms to send, 1331 ms to get response, and 1341 ms overall
17-03-18 03:43:17.764 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 03:43:17.764 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 7 at Y-position 64.056640625, Z-Position -0.170085299261216. ------
17-03-18 03:43:17.764 -07 000000581 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 03:43:17.764 -07 000000382 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.8926 mm, moving Z to -0.17652 mm
17-03-18 03:43:17.764 -07 000000382 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 03:43:17.774 -07 000000462 INF: FPGA: Recv FOCMRRCUR 
17-03-18 03:43:17.774 -07 000000581 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 03:43:17.774 -07 000000479 INF: Y Motor: Entering MoveAbsStepped (target = 103828 steps, sync = True, waitForSettling = True)
17-03-18 03:43:17.774 -07 000000479 INF: Y Motor: Moving to 64.8926 mm, started at 64.0566 mm, delta = 0.8360 mm
17-03-18 03:43:17.774 -07 000000479 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:43:17.774 -07 000000606 INF: Z Motor: Entering MoveAbsStepped (DAC = 38561, sync = True, waitForSettling = False)
17-03-18 03:43:17.774 -07 000000606 INF: Z Motor: Moving to -0.176521 mm, started at -0.170085 mm, distance = -6.44 um
17-03-18 03:43:17.774 -07 000000462 INF: FPGA: Recv YRDPOS 131189
17-03-18 03:43:17.784 -07 000000479 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:17.784 -07 000000479 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:43:17.784 -07 000000581 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 03:43:17.784 -07 000000479 INF: Y Motor: Last commanded position = 64.0626 mm (102500.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 03:43:17.784 -07 000000479 INF: Y Motor: Moving 1337 steps-12
17-03-18 03:43:17.794 -07 000000606 INF: FPGA: Xmit ZDACW 38561\n [Z Motor]
17-03-18 03:43:17.794 -07 000000437 INF: FPGA: Recv ZDACW
17-03-18 03:43:17.804 -07 000000479 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 03:43:17.804 -07 000000606 INF: FPGA: 'ZDACW 38561' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-18 03:43:17.814 -07 000000606 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:43:17.814 -07 000000437 INF: FPGA: Recv ZDACR 38561
17-03-18 03:43:17.824 -07 000000606 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 03:43:17.824 -07 000000606 INF: Z Motor: MoveAbsStepped took 48 ms (did NOT wait for settling yet))
17-03-18 03:43:17.954 -07 000000487 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) end. Duration was 377 ms.
17-03-18 03:43:17.954 -07 000000487 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-18 03:43:17.954 -07 000000487 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:43:17.954 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 381 ms.
17-03-18 03:43:17.954 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-18 03:43:17.954 -07 000000625 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:43:17.954 -07 000000487 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:43:17.954 -07 000000625 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 03:43:17.954 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-18 03:43:17.964 -07 000000487 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-18 03:43:17.984 -07 000000606 INF: FPGA: Recv FOCMRRFOC
17-03-18 03:43:17.984 -07 000000581 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 212 ms overall
17-03-18 03:43:18.174 -07 000000012 INF: FPGA: Recv YMVTILE
17-03-18 03:43:18.174 -07 000000479 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 390 ms overall
17-03-18 03:43:18.224 -07 000000479 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:43:18.224 -07 000000462 INF: FPGA: Recv YRDPOS 132872
17-03-18 03:43:18.234 -07 000000479 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 03:43:18.234 -07 000000479 INF: Y Motor: Encoder = 132872 = motor step 103806.3 = 64.8789 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:43:18.234 -07 000000479 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-18 03:43:18.234 -07 000000479 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 390 ms, distance = 0.836 mm, average velocity = 2.144 mm/sec
17-03-18 03:43:19.184 -07 000000479 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:43:19.184 -07 000000625 INF: FPGA: Recv YRDPOS 132872
17-03-18 03:43:19.194 -07 000000479 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:43:19.194 -07 000000479 INF: Y Motor: Encoder = 132872 = motor step 103806.3 = 64.8789 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:43:19.214 -07 000000479 INF: Y Motor: After move to 64.892609, error = -0.013702, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 03:43:19.224 -07 000000479 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 03:43:19.224 -07 000000479 INF: Y Motor: Moved to 64.8789 after 1449 ms (table move)
17-03-18 03:43:19.224 -07 000000382 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176521 mm (DAC = 38561)
17-03-18 03:43:19.224 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:19.224 -07 000000606 INF: FPGA: Recv ZSGSRD 36775
17-03-18 03:43:19.234 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 03:43:19.234 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:19.234 -07 000000606 INF: FPGA: Recv ZSGSRD 36765
17-03-18 03:43:19.244 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:19.244 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:19.244 -07 000000606 INF: FPGA: Recv ZSGSRD 36764
17-03-18 03:43:19.254 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:19.254 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:19.254 -07 000000437 INF: FPGA: Recv ZSGSRD 36770
17-03-18 03:43:19.264 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:19.264 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:19.264 -07 000000437 INF: FPGA: Recv ZSGSRD 36770
17-03-18 03:43:19.274 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:19.274 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:19.274 -07 000000581 INF: FPGA: Recv ZSGSRD 36767
17-03-18 03:43:19.284 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:19.284 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:19.284 -07 000000581 INF: FPGA: Recv ZSGSRD 36765
17-03-18 03:43:19.294 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:19.294 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:19.294 -07 000000581 INF: FPGA: Recv ZSGSRD 36763
17-03-18 03:43:19.304 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:19.304 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:19.304 -07 000000581 INF: FPGA: Recv ZSGSRD 36771
17-03-18 03:43:19.314 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:19.314 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:19.314 -07 000000581 INF: FPGA: Recv ZSGSRD 36766
17-03-18 03:43:19.324 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:19.324 -07 000000382 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:43:19.324 -07 000000012 INF: FPGA: Recv ZPIEZORD 32925
17-03-18 03:43:19.334 -07 000000382 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:19.334 -07 000000382 INF: Z Motor: Piezo is near 50.3 V (nominally 0 to 100 V), expect near 58.8 V, since DAC is at 5.884 V. Piezo Error = -8.5 V.
17-03-18 03:43:19.334 -07 000000382 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.5 um, Read 10 ADC samples: Avg = 36768 (-175.6 uncal um), Error = 0.9 uncal um, Median = 36766 (-175.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 36763 (-175.6 uncal um), Max = 36775 (-175.7 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 03:43:19.334 -07 000000382 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36768, posNoise = 7, negNoise = 5
17-03-18 03:43:19.334 -07 000000382 INF: Z Motor: After move to -0.176521, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:43:19.334 -07 000000382 INF: Z Motor: Settle wait time = 1451 ms, measure time = 109 ms (allowed 150 ms), total time = 1560 ms
17-03-18 03:43:19.334 -07 000000382 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-18 03:43:19.384 -07 000000382 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1612 ms
17-03-18 03:43:19.384 -07 000000382 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 03:43:19.384 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:43:19.384 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:43:19.384 -07 000000581 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:43:19.384 -07 000000012 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:43:19.384 -07 000000611 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 03:43:19.384 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:43:19.384 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 03:43:19.384 -07 000000611 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 03:43:19.384 -07 000000611 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 03:43:19.384 -07 000000611 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 03:43:19.404 -07 000000611 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-18 03:43:19.404 -07 000000611 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-18 03:43:19.404 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 03:43:19.454 -07 000000625 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 03:43:19.754 -07 000000611 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 03:43:19.754 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 03:43:19.754 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 03:43:19.754 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 596199184, 0x0, 559484976) start.
17-03-18 03:43:19.794 -07 000000581 INF: FPGA: Recv @CAMSNAP 380
17-03-18 03:43:19.794 -07 000000625 INF: FPGA: Recv CAMSNAP
17-03-18 03:43:19.794 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 381 ms to get response, and 385 ms overall
17-03-18 03:43:19.884 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 596199184, 0x0, 559484976) end. Duration was 127 ms.
17-03-18 03:43:19.884 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:43:19.884 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 03:43:19.884 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 130 ms.
17-03-18 03:43:19.894 -07 000000382 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 03:43:19.894 -07 000000479 INF: Autofocus start
17-03-18 03:43:19.894 -07 000000479 INF: MeasureProfile start
17-03-18 03:43:19.894 -07 000000462 INF: FPGA: Recv FOCMRRCUR 
17-03-18 03:43:19.904 -07 000000382 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 03:43:19.904 -07 000000382 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 03:43:19.904 -07 000000479 INF: MeasureProfile done
17-03-18 03:43:19.904 -07 000000479 INF: X=-64  Z correction [um]=-0.4038377
17-03-18 03:43:19.904 -07 000000479 INF: Autofocus finished
17-03-18 03:43:20.104 -07 000000462 INF: FPGA: Recv FOCMRRIMG
17-03-18 03:43:20.104 -07 000000382 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 03:43:20.104 -07 000000610 INF: ------------ Scan Snapping tile 7 at Y-position 64.87890625, Z-position -0.176528784039402. ----------
17-03-18 03:43:20.104 -07 000000610 INF: Cycle	116	Tile	7	Exposure Settings		A	410	G	197	T	197	C	410
17-03-18 03:43:20.114 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36985, sync = True, waitForSettling = True)
17-03-18 03:43:20.114 -07 000000610 INF: Z Motor: Moving to -0.169306 mm, started at -0.176529 mm, distance = 7.22 um
17-03-18 03:43:20.114 -07 000000610 INF: FPGA: Xmit ZDACW 36985\n [Z Motor]
17-03-18 03:43:20.114 -07 000000625 INF: FPGA: Recv ZDACW
17-03-18 03:43:20.124 -07 000000610 INF: FPGA: 'ZDACW 36985' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:20.124 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:43:20.124 -07 000000474 INF: FPGA: Recv ZDACR 36985
17-03-18 03:43:20.134 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:20.134 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 03:43:20.284 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:20.284 -07 000000437 INF: FPGA: Recv ZSGSRD 35645
17-03-18 03:43:20.294 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:43:20.294 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:20.294 -07 000000479 INF: FPGA: Recv ZSGSRD 35642
17-03-18 03:43:20.304 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 03:43:20.304 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:20.304 -07 000000512 INF: FPGA: Recv ZSGSRD 35646
17-03-18 03:43:20.314 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:20.314 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:20.314 -07 000000437 INF: FPGA: Recv ZSGSRD 35642
17-03-18 03:43:20.324 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:20.324 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:20.324 -07 000000625 INF: FPGA: Recv ZSGSRD 35646
17-03-18 03:43:20.334 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:20.334 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:20.334 -07 000000437 INF: FPGA: Recv ZSGSRD 35646
17-03-18 03:43:20.344 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:20.344 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:20.344 -07 000000437 INF: FPGA: Recv ZSGSRD 35649
17-03-18 03:43:20.354 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:20.354 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:20.354 -07 000000487 INF: FPGA: Recv ZSGSRD 35646
17-03-18 03:43:20.364 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:20.364 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:20.364 -07 000000437 INF: FPGA: Recv ZSGSRD 35648
17-03-18 03:43:20.374 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:20.374 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:20.374 -07 000000382 INF: FPGA: Recv ZSGSRD 35643
17-03-18 03:43:20.384 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:20.384 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:43:20.384 -07 000000437 INF: FPGA: Recv ZPIEZORD 31443
17-03-18 03:43:20.394 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:20.394 -07 000000610 INF: Z Motor: Piezo is near 47.2 V (nominally 0 to 100 V), expect near 56.4 V, since DAC is at 5.644 V. Piezo Error = -9.3 V.
17-03-18 03:43:20.394 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.3 um, Read 10 ADC samples: Avg = 35645 (-168.4 uncal um), Error = 0.9 uncal um, Median = 35646 (-168.4 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 35642 (-168.4 uncal um), Max = 35649 (-168.5 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 03:43:20.394 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35645, posNoise = 4, negNoise = 3
17-03-18 03:43:20.394 -07 000000610 INF: Z Motor: After move to -0.169306, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:43:20.394 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 03:43:20.394 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:43:20.394 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:43:20.394 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:43:20.394 -07 000000437 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:43:20.394 -07 000000625 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 03:43:20.394 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:43:20.394 -07 000000487 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 03:43:20.394 -07 000000487 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 03:43:20.394 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 03:43:20.394 -07 000000625 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 03:43:20.394 -07 000000487 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 03:43:20.394 -07 000000487 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 03:43:20.394 -07 000000625 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 03:43:20.394 -07 000000625 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 03:43:20.404 -07 000000487 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 03:43:20.404 -07 000000487 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 03:43:20.414 -07 000000625 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 03:43:20.414 -07 000000625 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 03:43:20.414 -07 000000487 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-18 03:43:20.414 -07 000000487 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 03:43:20.414 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 410 410 197 197 37162 150\n [Camera]
17-03-18 03:43:20.624 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP turning red on 199
17-03-18 03:43:20.854 -07 000000487 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 116, FrontChillerTemperature: 4.005817,
17-03-18 03:43:21.024 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 602
17-03-18 03:43:21.024 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 602
17-03-18 03:43:21.034 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:43:21.034 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:43:21.034 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) start.
17-03-18 03:43:21.034 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 602
17-03-18 03:43:21.034 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 602
17-03-18 03:43:21.034 -07 000000625 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:43:21.034 -07 000000625 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:43:21.034 -07 000000625 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-18 03:43:21.224 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37162 799
17-03-18 03:43:21.374 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP turning grn on 945
17-03-18 03:43:21.414 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) end. Duration was 381 ms.
17-03-18 03:43:21.414 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-18 03:43:21.414 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:43:21.414 -07 000000625 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 379 ms.
17-03-18 03:43:21.414 -07 000000625 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-18 03:43:21.414 -07 000000625 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:43:21.414 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 03:43:21.414 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-18 03:43:21.414 -07 000000625 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 03:43:21.424 -07 000000625 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 03:43:21.564 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1142
17-03-18 03:43:21.694 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1142
17-03-18 03:43:21.694 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1142
17-03-18 03:43:21.704 -07 000000437 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 03:43:21.704 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1142
17-03-18 03:43:21.704 -07 000000487 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:43:21.704 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 115. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1671, R2=1741, Total=3412. Warn if over 250 bubbles per interval.
17-03-18 03:43:21.704 -07 000000625 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:43:21.704 -07 000000625 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:43:21.704 -07 000000625 INF: Camera: sBCa_ReadImage(785074704, 2199785120, 0x0, 418435064) start.
17-03-18 03:43:21.714 -07 000000487 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:43:21.714 -07 000000487 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-18 03:43:21.764 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP 1334
17-03-18 03:43:21.764 -07 000000437 INF: FPGA: Recv CAMDBLSNAP
17-03-18 03:43:21.764 -07 000000610 INF: FPGA: 'CAMDBLSNAP 410 410 197 197 37162 150' command took 2 ms to send, 1331 ms to get response, and 1341 ms overall
17-03-18 03:43:21.764 -07 000000610 INF: Skipping AutoFocus in Tile 8: adopting Best-Z from the cache: -0.169747
17-03-18 03:43:21.764 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 65.7226 mm, moving Z to -0.16975 mm
17-03-18 03:43:21.764 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 03:43:21.764 -07 000000606 INF: Y Motor: Entering MoveAbsStepped (target = 105156 steps, sync = True, waitForSettling = True)
17-03-18 03:43:21.764 -07 000000606 INF: Y Motor: Moving to 65.7226 mm, started at 64.8789 mm, delta = 0.8437 mm
17-03-18 03:43:21.764 -07 000000606 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:43:21.764 -07 000000474 INF: Z Motor: Entering MoveAbsStepped (DAC = 37081, sync = True, waitForSettling = False)
17-03-18 03:43:21.764 -07 000000474 INF: Z Motor: Moving to -0.169746 mm, started at -0.169314 mm, distance = -0.43 um
17-03-18 03:43:21.764 -07 000000611 INF: FPGA: Recv YRDPOS 132872
17-03-18 03:43:21.774 -07 000000606 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 03:43:21.774 -07 000000606 INF: Y Motor: Encoder = 132872 = motor step 103806.3 = 64.8789 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:43:21.774 -07 000000606 INF: Y Motor: Last commanded position = 64.8926 mm (103828.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 03:43:21.774 -07 000000606 INF: Y Motor: Moving 1350 steps-28
17-03-18 03:43:21.774 -07 000000474 INF: FPGA: Xmit ZDACW 37081\n [Z Motor]
17-03-18 03:43:21.774 -07 000000611 INF: FPGA: Recv ZDACW
17-03-18 03:43:21.784 -07 000000606 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 03:43:21.784 -07 000000474 INF: FPGA: 'ZDACW 37081' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-18 03:43:21.794 -07 000000474 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:43:21.794 -07 000000569 INF: FPGA: Recv ZDACR 37081
17-03-18 03:43:21.804 -07 000000474 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 03:43:21.804 -07 000000474 INF: Z Motor: MoveAbsStepped took 34 ms (did NOT wait for settling yet))
17-03-18 03:43:22.094 -07 000000625 INF: Camera: sBCa_ReadImage(785074704, 2199785120, 0x0, 418435064) end. Duration was 382 ms.
17-03-18 03:43:22.094 -07 000000625 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-18 03:43:22.094 -07 000000625 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:43:22.094 -07 000000487 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 381 ms.
17-03-18 03:43:22.094 -07 000000487 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-18 03:43:22.094 -07 000000487 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:43:22.094 -07 000000625 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 03:43:22.094 -07 000000487 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 03:43:22.094 -07 000000487 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 03:43:22.104 -07 000000625 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 406 ms.
17-03-18 03:43:22.154 -07 000000581 INF: FPGA: Recv YMVTILE
17-03-18 03:43:22.154 -07 000000606 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-18 03:43:22.204 -07 000000606 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:43:22.204 -07 000000382 INF: FPGA: Recv YRDPOS 134582
17-03-18 03:43:22.214 -07 000000606 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 03:43:22.214 -07 000000606 INF: Y Motor: Encoder = 134582 = motor step 105142.2 = 65.7139 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:43:22.214 -07 000000606 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-18 03:43:22.214 -07 000000606 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.844 mm, average velocity = 2.174 mm/sec
17-03-18 03:43:23.164 -07 000000606 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:43:23.164 -07 000000487 INF: FPGA: Recv YRDPOS 134582
17-03-18 03:43:23.174 -07 000000606 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:43:23.174 -07 000000606 INF: Y Motor: Encoder = 134582 = motor step 105142.2 = 65.7139 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:43:23.204 -07 000000606 INF: Y Motor: After move to 65.722610, error = -0.008743, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 03:43:23.204 -07 000000606 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 03:43:23.204 -07 000000606 INF: Y Motor: Moved to 65.7139 after 1438 ms (table move)
17-03-18 03:43:23.204 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.169746 mm (DAC = 37081)
17-03-18 03:43:23.204 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:23.204 -07 000000382 INF: FPGA: Recv ZSGSRD 35709
17-03-18 03:43:23.214 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 03:43:23.214 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:23.214 -07 000000606 INF: FPGA: Recv ZSGSRD 35715
17-03-18 03:43:23.224 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:23.224 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:23.224 -07 000000382 INF: FPGA: Recv ZSGSRD 35711
17-03-18 03:43:23.234 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:23.234 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:23.234 -07 000000382 INF: FPGA: Recv ZSGSRD 35716
17-03-18 03:43:23.244 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:23.244 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:23.244 -07 000000569 INF: FPGA: Recv ZSGSRD 35714
17-03-18 03:43:23.254 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:23.254 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:23.254 -07 000000382 INF: FPGA: Recv ZSGSRD 35713
17-03-18 03:43:23.264 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:23.264 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:23.264 -07 000000382 INF: FPGA: Recv ZSGSRD 35715
17-03-18 03:43:23.274 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:23.274 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:23.274 -07 000000382 INF: FPGA: Recv ZSGSRD 35706
17-03-18 03:43:23.284 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:23.284 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:23.284 -07 000000382 INF: FPGA: Recv ZSGSRD 35713
17-03-18 03:43:23.294 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:23.294 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:23.294 -07 000000474 INF: FPGA: Recv ZSGSRD 35716
17-03-18 03:43:23.304 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:23.304 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:43:23.304 -07 000000474 INF: FPGA: Recv ZPIEZORD 31545
17-03-18 03:43:23.314 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:23.314 -07 000000610 INF: Z Motor: Piezo is near 47.4 V (nominally 0 to 100 V), expect near 56.6 V, since DAC is at 5.658 V. Piezo Error = -9.2 V.
17-03-18 03:43:23.314 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.7 um, Read 10 ADC samples: Avg = 35713 (-168.9 uncal um), Error = 0.9 uncal um, Median = 35714 (-168.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35706 (-168.8 uncal um), Max = 35716 (-168.9 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 03:43:23.314 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35713, posNoise = 3, negNoise = 7
17-03-18 03:43:23.314 -07 000000610 INF: Z Motor: After move to -0.169746, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:43:23.314 -07 000000610 INF: Z Motor: Settle wait time = 1440 ms, measure time = 104 ms (allowed 150 ms), total time = 1544 ms
17-03-18 03:43:23.314 -07 000000610 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-18 03:43:23.364 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1596 ms
17-03-18 03:43:23.364 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 03:43:23.364 -07 000000610 INF: ------------ Scan Snapping tile 8 at Y-position 65.7138671875, Z-position -0.169751240229844. ----------
17-03-18 03:43:23.364 -07 000000610 INF: Cycle	116	Tile	8	Exposure Settings		A	410	G	197	T	197	C	410
17-03-18 03:43:23.364 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36905, sync = True, waitForSettling = True)
17-03-18 03:43:23.364 -07 000000610 INF: Z Motor: Moving to -0.168940 mm, started at -0.169751 mm, distance = 0.81 um
17-03-18 03:43:23.364 -07 000000610 INF: FPGA: Xmit ZDACW 36905\n [Z Motor]
17-03-18 03:43:23.364 -07 000000625 INF: FPGA: Recv ZDACW
17-03-18 03:43:23.374 -07 000000610 INF: FPGA: 'ZDACW 36905' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 03:43:23.374 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:43:23.374 -07 000000625 INF: FPGA: Recv ZDACR 36905
17-03-18 03:43:23.384 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:23.384 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 03:43:23.534 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:23.534 -07 000000608 INF: FPGA: Recv ZSGSRD 35583
17-03-18 03:43:23.544 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:43:23.544 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:23.544 -07 000000581 INF: FPGA: Recv ZSGSRD 35595
17-03-18 03:43:23.554 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:23.554 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:23.554 -07 000000474 INF: FPGA: Recv ZSGSRD 35586
17-03-18 03:43:23.564 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:23.564 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:23.564 -07 000000474 INF: FPGA: Recv ZSGSRD 35587
17-03-18 03:43:23.574 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:23.574 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:23.574 -07 000000474 INF: FPGA: Recv ZSGSRD 35590
17-03-18 03:43:23.584 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:23.584 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:23.584 -07 000000474 INF: FPGA: Recv ZSGSRD 35584
17-03-18 03:43:23.594 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:23.594 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:23.594 -07 000000474 INF: FPGA: Recv ZSGSRD 35591
17-03-18 03:43:23.604 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:23.604 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:23.604 -07 000000569 INF: FPGA: Recv ZSGSRD 35581
17-03-18 03:43:23.614 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:23.614 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:23.614 -07 000000611 INF: FPGA: Recv ZSGSRD 35593
17-03-18 03:43:23.624 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:23.624 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:23.624 -07 000000581 INF: FPGA: Recv ZSGSRD 35585
17-03-18 03:43:23.634 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:23.634 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:43:23.634 -07 000000437 INF: FPGA: Recv ZPIEZORD 31348
17-03-18 03:43:23.644 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:23.644 -07 000000610 INF: Z Motor: Piezo is near 47.0 V (nominally 0 to 100 V), expect near 56.3 V, since DAC is at 5.631 V. Piezo Error = -9.3 V.
17-03-18 03:43:23.644 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.9 um, Read 10 ADC samples: Avg = 35588 (-168.1 uncal um), Error = 0.9 uncal um, Median = 35586 (-168.1 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 35581 (-168.0 uncal um), Max = 35595 (-168.1 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 03:43:23.644 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35588, posNoise = 7, negNoise = 7
17-03-18 03:43:23.644 -07 000000610 INF: Z Motor: After move to -0.168940, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:43:23.644 -07 000000610 INF: Z Motor: MoveAbsStepped took 274 ms)
17-03-18 03:43:23.644 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:43:23.644 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:43:23.644 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:43:23.644 -07 000000581 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:43:23.644 -07 000000437 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 03:43:23.644 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:43:23.644 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 03:43:23.644 -07 000000437 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 03:43:23.644 -07 000000581 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 03:43:23.644 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 03:43:23.644 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 03:43:23.644 -07 000000581 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 03:43:23.644 -07 000000437 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 03:43:23.654 -07 000000437 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 03:43:23.654 -07 000000581 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 03:43:23.654 -07 000000581 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 03:43:23.664 -07 000000437 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 12 ms.
17-03-18 03:43:23.664 -07 000000437 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 18 ms.
17-03-18 03:43:23.664 -07 000000581 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 12 ms.
17-03-18 03:43:23.664 -07 000000581 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 03:43:23.664 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 410 410 197 197 37081 150\n [Camera]
17-03-18 03:43:23.864 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 03:43:24.274 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 602
17-03-18 03:43:24.274 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 602
17-03-18 03:43:24.274 -07 000000581 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:43:24.274 -07 000000581 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:43:24.274 -07 000000581 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 03:43:24.284 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 602
17-03-18 03:43:24.284 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 602
17-03-18 03:43:24.284 -07 000000437 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:43:24.284 -07 000000437 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:43:24.284 -07 000000437 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start.
17-03-18 03:43:24.474 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37081 795
17-03-18 03:43:24.624 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning grn on 951
17-03-18 03:43:24.654 -07 000000437 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 373 ms.
17-03-18 03:43:24.654 -07 000000437 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 373 ms.
17-03-18 03:43:24.654 -07 000000437 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:43:24.654 -07 000000581 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 377 ms.
17-03-18 03:43:24.654 -07 000000581 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-18 03:43:24.654 -07 000000581 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:43:24.654 -07 000000437 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 03:43:24.664 -07 000000581 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 03:43:24.664 -07 000000581 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-18 03:43:24.664 -07 000000437 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-18 03:43:24.814 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1142
17-03-18 03:43:24.814 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1142
17-03-18 03:43:24.814 -07 000000437 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:43:24.824 -07 000000437 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:43:24.824 -07 000000437 INF: Camera: sBCa_ReadImage(785074288, 591793880, 0x0, 391868352) start.
17-03-18 03:43:24.824 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1142
17-03-18 03:43:24.824 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1142
17-03-18 03:43:24.824 -07 000000581 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:43:24.834 -07 000000581 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:43:24.834 -07 000000581 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 03:43:25.004 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP 1335
17-03-18 03:43:25.004 -07 000000569 INF: FPGA: Recv CAMDBLSNAP
17-03-18 03:43:25.004 -07 000000610 INF: FPGA: 'CAMDBLSNAP 410 410 197 197 37081 150' command took 2 ms to send, 1329 ms to get response, and 1341 ms overall
17-03-18 03:43:25.014 -07 000000610 INF: Skipping AutoFocus in Tile 9: adopting Best-Z from the cache: -0.169423
17-03-18 03:43:25.014 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 66.5526 mm, moving Z to -0.16942 mm
17-03-18 03:43:25.014 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 03:43:25.014 -07 000000569 INF: Y Motor: Entering MoveAbsStepped (target = 106484 steps, sync = True, waitForSettling = True)
17-03-18 03:43:25.014 -07 000000569 INF: Y Motor: Moving to 66.5526 mm, started at 65.7139 mm, delta = 0.8387 mm
17-03-18 03:43:25.014 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:43:25.204 -07 000000437 INF: Camera: sBCa_ReadImage(785074288, 591793880, 0x0, 391868352) end. Duration was 382 ms.
17-03-18 03:43:25.204 -07 000000437 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-18 03:43:25.204 -07 000000437 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:43:25.204 -07 000000437 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:43:25.204 -07 000000437 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-18 03:43:25.214 -07 000000581 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 381 ms.
17-03-18 03:43:25.214 -07 000000581 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 381 ms.
17-03-18 03:43:25.214 -07 000000581 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:43:25.214 -07 000000581 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:43:25.224 -07 000000437 INF: Z Motor: Entering MoveAbsStepped (DAC = 37010, sync = True, waitForSettling = False)
17-03-18 03:43:25.224 -07 000000437 INF: Z Motor: Moving to -0.169421 mm, started at -0.168948 mm, distance = -0.47 um
17-03-18 03:43:25.224 -07 000000437 INF: FPGA: Xmit ZDACW 37010\n [Z Motor]
17-03-18 03:43:25.224 -07 000000581 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 03:43:25.234 -07 000000581 INF: FPGA: Recv YRDPOS 134582
17-03-18 03:43:25.234 -07 000000581 INF: FPGA: Recv ZDACW
17-03-18 03:43:25.234 -07 000000437 INF: FPGA: 'ZDACW 37010' command took 0 ms to send, 4 ms to get response, and 13 ms overall
17-03-18 03:43:25.234 -07 000000437 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:43:25.234 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 214 ms to get response, and 220 ms overall
17-03-18 03:43:25.244 -07 000000569 INF: Y Motor: Encoder = 134582 = motor step 105142.2 = 65.7139 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:43:25.244 -07 000000569 INF: Y Motor: Last commanded position = 65.7226 mm (105156.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 03:43:25.244 -07 000000569 INF: Y Motor: Moving 1342 steps-18
17-03-18 03:43:25.244 -07 000000581 INF: FPGA: Recv ZDACR 37010
17-03-18 03:43:25.244 -07 000000437 INF: FPGA: 'ZDACR' command took 0 ms to send, 1 ms to get response, and 11 ms overall
17-03-18 03:43:25.244 -07 000000437 INF: Z Motor: MoveAbsStepped took 25 ms (did NOT wait for settling yet))
17-03-18 03:43:25.244 -07 000000569 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 03:43:25.624 -07 000000581 INF: FPGA: Recv YMVTILE
17-03-18 03:43:25.624 -07 000000569 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 375 ms to get response, and 378 ms overall
17-03-18 03:43:25.674 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:43:25.674 -07 000000437 INF: FPGA: Recv YRDPOS 136272
17-03-18 03:43:25.684 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 03:43:25.684 -07 000000569 INF: Y Motor: Encoder = 136272 = motor step 106462.5 = 66.5391 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:43:25.684 -07 000000569 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-18 03:43:25.684 -07 000000569 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 378 ms, distance = 0.839 mm, average velocity = 2.219 mm/sec
17-03-18 03:43:26.214 -07 000000012 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 116, FrontChillerTemperature: 4.016692,
17-03-18 03:43:26.604 -07 000000581 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 03:43:26.604 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 115. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1671, R2=1741, Total=3412. Warn if over 250 bubbles per interval.
17-03-18 03:43:26.634 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:43:26.634 -07 000000437 INF: FPGA: Recv YRDPOS 136272
17-03-18 03:43:26.644 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:43:26.644 -07 000000569 INF: Y Motor: Encoder = 136272 = motor step 106462.5 = 66.5391 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:43:26.674 -07 000000569 INF: Y Motor: After move to 66.552605, error = -0.013542, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 03:43:26.674 -07 000000569 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 03:43:26.674 -07 000000569 INF: Y Motor: Moved to 66.5391 after 1657 ms (table move)
17-03-18 03:43:26.674 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.169421 mm (DAC = 37010)
17-03-18 03:43:26.674 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:26.674 -07 000000625 INF: FPGA: Recv ZSGSRD 35661
17-03-18 03:43:26.684 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 03:43:26.684 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:26.684 -07 000000606 INF: FPGA: Recv ZSGSRD 35666
17-03-18 03:43:26.694 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:26.694 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:26.694 -07 000000606 INF: FPGA: Recv ZSGSRD 35664
17-03-18 03:43:26.704 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:26.704 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:26.704 -07 000000606 INF: FPGA: Recv ZSGSRD 35660
17-03-18 03:43:26.714 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:26.714 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:26.714 -07 000000606 INF: FPGA: Recv ZSGSRD 35658
17-03-18 03:43:26.724 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:26.724 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:26.724 -07 000000606 INF: FPGA: Recv ZSGSRD 35656
17-03-18 03:43:26.734 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:26.734 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:26.734 -07 000000625 INF: FPGA: Recv ZSGSRD 35664
17-03-18 03:43:26.744 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:26.744 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:26.744 -07 000000625 INF: FPGA: Recv ZSGSRD 35673
17-03-18 03:43:26.754 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:26.754 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:26.754 -07 000000581 INF: FPGA: Recv ZSGSRD 35665
17-03-18 03:43:26.764 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:26.764 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:26.764 -07 000000581 INF: FPGA: Recv ZSGSRD 35663
17-03-18 03:43:26.774 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:26.774 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:43:26.774 -07 000000625 INF: FPGA: Recv ZPIEZORD 31468
17-03-18 03:43:26.784 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:26.784 -07 000000610 INF: Z Motor: Piezo is near 47.2 V (nominally 0 to 100 V), expect near 56.5 V, since DAC is at 5.647 V. Piezo Error = -9.2 V.
17-03-18 03:43:26.784 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.4 um, Read 10 ADC samples: Avg = 35663 (-168.6 uncal um), Error = 0.9 uncal um, Median = 35664 (-168.6 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 35656 (-168.5 uncal um), Max = 35673 (-168.6 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 03:43:26.784 -07 000000610 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35663, posNoise = 10, negNoise = 7
17-03-18 03:43:26.784 -07 000000610 INF: Z Motor: After move to -0.169421, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:43:26.784 -07 000000610 INF: Z Motor: Settle wait time = 1452 ms, measure time = 107 ms (allowed 150 ms), total time = 1559 ms
17-03-18 03:43:26.784 -07 000000610 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-18 03:43:26.834 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1818 ms
17-03-18 03:43:26.834 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 03:43:26.834 -07 000000610 INF: ------------ Scan Snapping tile 9 at Y-position 66.5390625, Z-position -0.169430029622756. ----------
17-03-18 03:43:26.834 -07 000000610 INF: Cycle	116	Tile	9	Exposure Settings		A	410	G	197	T	197	C	410
17-03-18 03:43:26.834 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36834, sync = True, waitForSettling = True)
17-03-18 03:43:26.834 -07 000000610 INF: Z Motor: Moving to -0.168615 mm, started at -0.169430 mm, distance = 0.81 um
17-03-18 03:43:26.834 -07 000000610 INF: FPGA: Xmit ZDACW 36834\n [Z Motor]
17-03-18 03:43:26.834 -07 000000581 INF: FPGA: Recv ZDACW
17-03-18 03:43:26.844 -07 000000610 INF: FPGA: 'ZDACW 36834' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 03:43:26.844 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:43:26.844 -07 000000581 INF: FPGA: Recv ZDACR 36834
17-03-18 03:43:26.854 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:26.854 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 03:43:27.004 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:27.004 -07 000000512 INF: FPGA: Recv ZSGSRD 35537
17-03-18 03:43:27.014 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:43:27.014 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:27.014 -07 000000581 INF: FPGA: Recv ZSGSRD 35535
17-03-18 03:43:27.024 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:27.024 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:27.024 -07 000000581 INF: FPGA: Recv ZSGSRD 35538
17-03-18 03:43:27.034 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:27.034 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:27.034 -07 000000581 INF: FPGA: Recv ZSGSRD 35540
17-03-18 03:43:27.044 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:27.044 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:27.044 -07 000000581 INF: FPGA: Recv ZSGSRD 35537
17-03-18 03:43:27.054 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:27.054 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:27.054 -07 000000581 INF: FPGA: Recv ZSGSRD 35545
17-03-18 03:43:27.064 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:27.064 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:27.064 -07 000000512 INF: FPGA: Recv ZSGSRD 35541
17-03-18 03:43:27.074 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:27.074 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:27.074 -07 000000581 INF: FPGA: Recv ZSGSRD 35541
17-03-18 03:43:27.084 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:27.084 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:27.084 -07 000000581 INF: FPGA: Recv ZSGSRD 35540
17-03-18 03:43:27.094 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:27.094 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:27.094 -07 000000581 INF: FPGA: Recv ZSGSRD 35538
17-03-18 03:43:27.104 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:27.104 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:43:27.104 -07 000000569 INF: FPGA: Recv ZPIEZORD 31297
17-03-18 03:43:27.114 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:27.114 -07 000000610 INF: Z Motor: Piezo is near 46.9 V (nominally 0 to 100 V), expect near 56.2 V, since DAC is at 5.621 V. Piezo Error = -9.3 V.
17-03-18 03:43:27.114 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.6 um, Read 10 ADC samples: Avg = 35539 (-167.8 uncal um), Error = 0.9 uncal um, Median = 35539 (-167.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35535 (-167.7 uncal um), Max = 35545 (-167.8 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 03:43:27.114 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35539, posNoise = 6, negNoise = 4
17-03-18 03:43:27.114 -07 000000610 INF: Z Motor: After move to -0.168615, error = -0.000018, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:43:27.114 -07 000000610 INF: Z Motor: MoveAbsStepped took 274 ms)
17-03-18 03:43:27.114 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:43:27.114 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:43:27.114 -07 000000479 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:43:27.114 -07 000000012 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:43:27.114 -07 000000487 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 03:43:27.114 -07 000000487 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:43:27.114 -07 000000606 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 03:43:27.114 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 03:43:27.114 -07 000000487 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 03:43:27.114 -07 000000487 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 03:43:27.114 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 03:43:27.114 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 03:43:27.124 -07 000000487 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 03:43:27.124 -07 000000487 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 03:43:27.124 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-18 03:43:27.124 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 03:43:27.134 -07 000000487 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 03:43:27.134 -07 000000487 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 03:43:27.134 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 03:43:27.134 -07 000000606 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 03:43:27.144 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 410 410 197 197 37010 150\n [Camera]
17-03-18 03:43:27.334 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 03:43:27.744 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 602
17-03-18 03:43:27.744 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 602
17-03-18 03:43:27.754 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:43:27.754 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 602
17-03-18 03:43:27.754 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 602
17-03-18 03:43:27.754 -07 000000625 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:43:27.754 -07 000000625 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:43:27.754 -07 000000625 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 03:43:27.754 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:43:27.754 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 2199785120, 0x0, 391868352) start.
17-03-18 03:43:27.944 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37010 795
17-03-18 03:43:28.094 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP turning grn on 945
17-03-18 03:43:28.134 -07 000000625 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 384 ms.
17-03-18 03:43:28.134 -07 000000625 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-18 03:43:28.134 -07 000000625 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:43:28.144 -07 000000625 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 03:43:28.154 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 2199785120, 0x0, 391868352) end. Duration was 396 ms.
17-03-18 03:43:28.154 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 03:43:28.154 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:43:28.154 -07 000000625 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 03:43:28.154 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 03:43:28.154 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-18 03:43:28.284 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1142
17-03-18 03:43:28.294 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1142
17-03-18 03:43:28.294 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:43:28.294 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:43:28.294 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) start.
17-03-18 03:43:28.294 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1142
17-03-18 03:43:28.294 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1142
17-03-18 03:43:28.294 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:43:28.294 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:43:28.294 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) start.
17-03-18 03:43:28.484 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP 1334
17-03-18 03:43:28.484 -07 000000479 INF: FPGA: Recv CAMDBLSNAP
17-03-18 03:43:28.484 -07 000000610 INF: FPGA: 'CAMDBLSNAP 410 410 197 197 37010 150' command took 2 ms to send, 1331 ms to get response, and 1341 ms overall
17-03-18 03:43:28.484 -07 000000610 INF: Skipping AutoFocus in Tile 10: adopting Best-Z from the cache: -0.169456
17-03-18 03:43:28.484 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 67.3826 mm, moving Z to -0.16946 mm
17-03-18 03:43:28.484 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 03:43:28.484 -07 000000479 INF: Y Motor: Entering MoveAbsStepped (target = 107812 steps, sync = True, waitForSettling = True)
17-03-18 03:43:28.484 -07 000000479 INF: Y Motor: Moving to 67.3826 mm, started at 66.5391 mm, delta = 0.8435 mm
17-03-18 03:43:28.484 -07 000000479 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:43:28.674 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) end. Duration was 381 ms.
17-03-18 03:43:28.674 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-18 03:43:28.674 -07 000000625 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:43:28.674 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) end. Duration was 379 ms.
17-03-18 03:43:28.674 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-18 03:43:28.674 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:43:28.674 -07 000000625 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 03:43:28.674 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-18 03:43:28.674 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 03:43:28.684 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-18 03:43:28.684 -07 000000625 INF: Z Motor: Entering MoveAbsStepped (DAC = 37018, sync = True, waitForSettling = False)
17-03-18 03:43:28.684 -07 000000625 INF: Z Motor: Moving to -0.169458 mm, started at -0.168633 mm, distance = -0.82 um
17-03-18 03:43:28.684 -07 000000625 INF: FPGA: Xmit ZDACW 37018\n [Z Motor]
17-03-18 03:43:28.694 -07 000000606 INF: FPGA: Recv YRDPOS 136272
17-03-18 03:43:28.694 -07 000000606 INF: FPGA: Recv ZDACW
17-03-18 03:43:28.694 -07 000000479 INF: FPGA: 'YRDPOS' command took 0 ms to send, 206 ms to get response, and 210 ms overall
17-03-18 03:43:28.694 -07 000000625 INF: FPGA: 'ZDACW 37018' command took 0 ms to send, 6 ms to get response, and 6 ms overall
17-03-18 03:43:28.694 -07 000000479 INF: Y Motor: Encoder = 136272 = motor step 106462.5 = 66.5391 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:43:28.694 -07 000000479 INF: Y Motor: Last commanded position = 66.5526 mm (106484.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 03:43:28.694 -07 000000479 INF: Y Motor: Moving 1350 steps-28
17-03-18 03:43:28.694 -07 000000625 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:43:28.704 -07 000000479 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 03:43:28.704 -07 000000606 INF: FPGA: Recv ZDACR 37018
17-03-18 03:43:28.704 -07 000000625 INF: FPGA: 'ZDACR' command took 1 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 03:43:28.704 -07 000000625 INF: Z Motor: MoveAbsStepped took 11 ms (did NOT wait for settling yet))
17-03-18 03:43:29.074 -07 000000606 INF: FPGA: Recv YMVTILE
17-03-18 03:43:29.074 -07 000000479 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 381 ms overall
17-03-18 03:43:29.124 -07 000000479 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:43:29.124 -07 000000606 INF: FPGA: Recv YRDPOS 137977
17-03-18 03:43:29.134 -07 000000479 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 03:43:29.134 -07 000000479 INF: Y Motor: Encoder = 137977 = motor step 107794.5 = 67.3716 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:43:29.134 -07 000000479 INF: Y Motor: Position error before settling (table move) = -23 encoder counts (-0.011 mm)
17-03-18 03:43:29.134 -07 000000479 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 381 ms, distance = 0.844 mm, average velocity = 2.214 mm/sec
17-03-18 03:43:30.084 -07 000000479 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:43:30.084 -07 000000625 INF: FPGA: Recv YRDPOS 137978
17-03-18 03:43:30.094 -07 000000479 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:43:30.094 -07 000000479 INF: Y Motor: Encoder = 137978 = motor step 107795.3 = 67.3721 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:43:30.114 -07 000000479 INF: Y Motor: After move to 67.382607, error = -0.010536, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 03:43:30.124 -07 000000479 INF: Y Motor: Position error after settling (table move) = -22 encoder counts (-0.011 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 03:43:30.124 -07 000000479 INF: Y Motor: Moved to 67.3721 after 1633 ms (table move)
17-03-18 03:43:30.124 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.169458 mm (DAC = 37018)
17-03-18 03:43:30.124 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:30.124 -07 000000625 INF: FPGA: Recv ZSGSRD 35669
17-03-18 03:43:30.134 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 03:43:30.134 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:30.134 -07 000000462 INF: FPGA: Recv ZSGSRD 35667
17-03-18 03:43:30.144 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:30.144 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:30.144 -07 000000625 INF: FPGA: Recv ZSGSRD 35673
17-03-18 03:43:30.154 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:30.154 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:30.154 -07 000000462 INF: FPGA: Recv ZSGSRD 35675
17-03-18 03:43:30.164 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:30.164 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:30.164 -07 000000625 INF: FPGA: Recv ZSGSRD 35675
17-03-18 03:43:30.174 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:30.174 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:30.174 -07 000000462 INF: FPGA: Recv ZSGSRD 35668
17-03-18 03:43:30.184 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:30.184 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:30.184 -07 000000606 INF: FPGA: Recv ZSGSRD 35661
17-03-18 03:43:30.194 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:30.194 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:30.194 -07 000000625 INF: FPGA: Recv ZSGSRD 35665
17-03-18 03:43:30.204 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:30.204 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:30.204 -07 000000606 INF: FPGA: Recv ZSGSRD 35669
17-03-18 03:43:30.214 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:30.214 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:30.214 -07 000000606 INF: FPGA: Recv ZSGSRD 35674
17-03-18 03:43:30.224 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:30.224 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:43:30.224 -07 000000625 INF: FPGA: Recv ZPIEZORD 31455
17-03-18 03:43:30.234 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:30.234 -07 000000610 INF: Z Motor: Piezo is near 47.2 V (nominally 0 to 100 V), expect near 56.5 V, since DAC is at 5.649 V. Piezo Error = -9.3 V.
17-03-18 03:43:30.234 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.5 um, Read 10 ADC samples: Avg = 35670 (-168.6 uncal um), Error = 0.9 uncal um, Median = 35669 (-168.6 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 35661 (-168.5 uncal um), Max = 35675 (-168.6 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-18 03:43:30.234 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35670, posNoise = 5, negNoise = 9
17-03-18 03:43:30.234 -07 000000610 INF: Z Motor: After move to -0.169458, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:43:30.234 -07 000000610 INF: Z Motor: Settle wait time = 1433 ms, measure time = 108 ms (allowed 150 ms), total time = 1541 ms
17-03-18 03:43:30.234 -07 000000610 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-18 03:43:30.284 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1796 ms
17-03-18 03:43:30.284 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 03:43:30.284 -07 000000610 INF: ------------ Scan Snapping tile 10 at Y-position 67.3720703125, Z-position -0.169474999107748. ----------
17-03-18 03:43:30.284 -07 000000610 INF: Cycle	116	Tile	10	Exposure Settings		A	410	G	197	T	197	C	410
17-03-18 03:43:30.284 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36841, sync = True, waitForSettling = True)
17-03-18 03:43:30.284 -07 000000610 INF: Z Motor: Moving to -0.168647 mm, started at -0.169475 mm, distance = 0.83 um
17-03-18 03:43:30.284 -07 000000610 INF: FPGA: Xmit ZDACW 36841\n [Z Motor]
17-03-18 03:43:30.284 -07 000000462 INF: FPGA: Recv ZDACW
17-03-18 03:43:30.294 -07 000000610 INF: FPGA: 'ZDACW 36841' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 03:43:30.294 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:43:30.294 -07 000000625 INF: FPGA: Recv ZDACR 36841
17-03-18 03:43:30.304 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:30.304 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 03:43:30.454 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:30.454 -07 000000479 INF: FPGA: Recv ZSGSRD 35541
17-03-18 03:43:30.464 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:43:30.464 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:30.464 -07 000000462 INF: FPGA: Recv ZSGSRD 35547
17-03-18 03:43:30.474 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:30.474 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:30.474 -07 000000606 INF: FPGA: Recv ZSGSRD 35547
17-03-18 03:43:30.484 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:30.484 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:30.484 -07 000000474 INF: FPGA: Recv ZSGSRD 35541
17-03-18 03:43:30.494 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:30.494 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:30.494 -07 000000606 INF: FPGA: Recv ZSGSRD 35544
17-03-18 03:43:30.504 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:30.504 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:30.504 -07 000000625 INF: FPGA: Recv ZSGSRD 35539
17-03-18 03:43:30.514 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:30.514 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:30.514 -07 000000606 INF: FPGA: Recv ZSGSRD 35545
17-03-18 03:43:30.524 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:30.524 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:30.524 -07 000000474 INF: FPGA: Recv ZSGSRD 35537
17-03-18 03:43:30.534 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:30.534 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:30.534 -07 000000479 INF: FPGA: Recv ZSGSRD 35537
17-03-18 03:43:30.544 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:30.544 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:30.544 -07 000000474 INF: FPGA: Recv ZSGSRD 35547
17-03-18 03:43:30.554 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:30.554 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:43:30.554 -07 000000479 INF: FPGA: Recv ZPIEZORD 31312
17-03-18 03:43:30.564 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:30.564 -07 000000610 INF: Z Motor: Piezo is near 46.9 V (nominally 0 to 100 V), expect near 56.2 V, since DAC is at 5.622 V. Piezo Error = -9.3 V.
17-03-18 03:43:30.564 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.6 um, Read 10 ADC samples: Avg = 35542 (-167.8 uncal um), Error = 0.9 uncal um, Median = 35542 (-167.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35537 (-167.7 uncal um), Max = 35547 (-167.8 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 03:43:30.564 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35542, posNoise = 5, negNoise = 5
17-03-18 03:43:30.564 -07 000000610 INF: Z Motor: After move to -0.168647, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:43:30.564 -07 000000610 INF: Z Motor: MoveAbsStepped took 274 ms)
17-03-18 03:43:30.564 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:43:30.564 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:43:30.564 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:43:30.564 -07 000000608 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:43:30.564 -07 000000479 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 03:43:30.564 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:43:30.564 -07 000000474 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 03:43:30.564 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 03:43:30.564 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 03:43:30.564 -07 000000479 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 03:43:30.564 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 03:43:30.564 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 03:43:30.574 -07 000000479 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 03:43:30.574 -07 000000479 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 03:43:30.574 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 03:43:30.574 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 03:43:30.584 -07 000000479 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 14 ms.
17-03-18 03:43:30.584 -07 000000479 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 03:43:30.584 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 03:43:30.584 -07 000000474 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 03:43:30.594 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 410 410 197 197 37018 150\n [Camera]
17-03-18 03:43:30.784 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 03:43:31.204 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 602
17-03-18 03:43:31.204 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 602
17-03-18 03:43:31.204 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:43:31.204 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:43:31.204 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 03:43:31.204 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 602
17-03-18 03:43:31.204 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 602
17-03-18 03:43:31.204 -07 000000487 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:43:31.324 -07 000000487 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:43:31.324 -07 000000487 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) start.
17-03-18 03:43:31.394 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37018 795
17-03-18 03:43:31.544 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning grn on 945
17-03-18 03:43:31.584 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 382 ms.
17-03-18 03:43:31.584 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-18 03:43:31.584 -07 000000625 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:43:31.584 -07 000000625 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-18 03:43:31.584 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-18 03:43:31.604 -07 000000606 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 03:43:31.604 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 115. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1671, R2=1741, Total=3412. Warn if over 250 bubbles per interval.
17-03-18 03:43:31.644 -07 000000474 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 116, FrontChillerTemperature: 3.999021,
17-03-18 03:43:31.694 -07 000000487 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) end. Duration was 370 ms.
17-03-18 03:43:31.694 -07 000000487 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 370 ms.
17-03-18 03:43:31.694 -07 000000487 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:43:31.694 -07 000000487 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:43:31.704 -07 000000487 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 498 ms.
17-03-18 03:43:31.734 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1142
17-03-18 03:43:31.744 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1142
17-03-18 03:43:31.744 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:43:31.744 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1142
17-03-18 03:43:31.744 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1142
17-03-18 03:43:31.744 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:43:31.744 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:43:31.744 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-18 03:43:31.744 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:43:31.744 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2199785120, 0x0, 418435064) start.
17-03-18 03:43:31.934 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP 1335
17-03-18 03:43:31.934 -07 000000462 INF: FPGA: Recv CAMDBLSNAP
17-03-18 03:43:31.934 -07 000000610 INF: FPGA: 'CAMDBLSNAP 410 410 197 197 37018 150' command took 2 ms to send, 1331 ms to get response, and 1341 ms overall
17-03-18 03:43:31.934 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 03:43:31.934 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 11 at Y-position 67.3720703125, Z-Position -0.168652699953603. ------
17-03-18 03:43:31.954 -07 000000462 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 03:43:32.124 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 375 ms.
17-03-18 03:43:32.124 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 375 ms.
17-03-18 03:43:32.124 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:43:32.124 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2199785120, 0x0, 418435064) end. Duration was 374 ms.
17-03-18 03:43:32.124 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-18 03:43:32.124 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:43:32.124 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:43:32.124 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-18 03:43:32.124 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:43:32.134 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-18 03:43:32.134 -07 000000608 INF: Y Motor: MoveYZ optimized starting. Moving Y to 68.2126 mm, moving Z to -0.17495 mm
17-03-18 03:43:32.134 -07 000000608 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 03:43:32.144 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-18 03:43:32.144 -07 000000462 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 184 ms to get response, and 204 ms overall
17-03-18 03:43:32.144 -07 000000569 INF: Y Motor: Entering MoveAbsStepped (target = 109140 steps, sync = True, waitForSettling = True)
17-03-18 03:43:32.144 -07 000000569 INF: Y Motor: Moving to 68.2126 mm, started at 67.3721 mm, delta = 0.8405 mm
17-03-18 03:43:32.154 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:43:32.164 -07 000000462 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 03:43:32.824 -07 000000012 INF: Z Motor: Entering MoveAbsStepped (DAC = 38217, sync = True, waitForSettling = False)
17-03-18 03:43:32.824 -07 000000012 INF: Z Motor: Moving to -0.174946 mm, started at -0.168653 mm, distance = -6.29 um
17-03-18 03:43:32.824 -07 000000012 INF: FPGA: Xmit ZDACW 38217\n [Z Motor]
17-03-18 03:43:33.824 -07 000000487 INF: FPGA: Recv YRDPOS 137978
17-03-18 03:43:33.824 -07 000000487 INF: FPGA: Recv FOCMRRFOC
17-03-18 03:43:33.824 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1660 ms to get response, and 1674 ms overall
17-03-18 03:43:33.824 -07 000000487 INF: FPGA: Recv ZDACW
17-03-18 03:43:33.824 -07 000000012 INF: FPGA: 'ZDACW 38217' command took 0 ms to send, 993 ms to get response, and 1002 ms overall
17-03-18 03:43:33.824 -07 000000012 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:43:33.824 -07 000000462 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 1653 ms to get response, and 1678 ms overall
17-03-18 03:43:33.824 -07 000000569 INF: Y Motor: Encoder = 137978 = motor step 107795.3 = 67.3721 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:43:33.824 -07 000000569 INF: Y Motor: Last commanded position = 67.3826 mm (107812.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 03:43:33.824 -07 000000569 INF: Y Motor: Moving 1345 steps-23
17-03-18 03:43:33.824 -07 000000487 INF: FPGA: Recv ZDACR 38217
17-03-18 03:43:33.834 -07 000000012 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 03:43:33.834 -07 000000569 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 03:43:33.834 -07 000000012 INF: Z Motor: MoveAbsStepped took 1008 ms (did NOT wait for settling yet))
17-03-18 03:43:34.204 -07 000000487 INF: FPGA: Recv YMVTILE
17-03-18 03:43:34.204 -07 000000569 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 383 ms overall
17-03-18 03:43:34.254 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:43:34.254 -07 000000012 INF: FPGA: Recv YRDPOS 139684
17-03-18 03:43:34.264 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 03:43:34.264 -07 000000569 INF: Y Motor: Encoder = 139684 = motor step 109128.1 = 68.2051 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:43:34.264 -07 000000569 INF: Y Motor: Position error before settling (table move) = -15 encoder counts (-0.007 mm)
17-03-18 03:43:34.264 -07 000000569 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 383 ms, distance = 0.841 mm, average velocity = 2.195 mm/sec
17-03-18 03:43:35.214 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:43:35.214 -07 000000462 INF: FPGA: Recv YRDPOS 139684
17-03-18 03:43:35.224 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:43:35.224 -07 000000569 INF: Y Motor: Encoder = 139684 = motor step 109128.1 = 68.2051 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:43:35.244 -07 000000569 INF: Y Motor: After move to 68.212608, error = -0.007530, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 03:43:35.244 -07 000000569 INF: Y Motor: Position error after settling (table move) = -15 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 03:43:35.244 -07 000000569 INF: Y Motor: Moved to 68.2051 after 3103 ms (table move)
17-03-18 03:43:35.254 -07 000000608 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174946 mm (DAC = 38217)
17-03-18 03:43:35.254 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:35.254 -07 000000462 INF: FPGA: Recv ZSGSRD 36534
17-03-18 03:43:35.264 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 03:43:35.264 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:35.264 -07 000000569 INF: FPGA: Recv ZSGSRD 36528
17-03-18 03:43:35.274 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:35.274 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:35.274 -07 000000012 INF: FPGA: Recv ZSGSRD 36530
17-03-18 03:43:35.284 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:35.284 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:35.284 -07 000000462 INF: FPGA: Recv ZSGSRD 36525
17-03-18 03:43:35.294 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:35.294 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:35.294 -07 000000012 INF: FPGA: Recv ZSGSRD 36524
17-03-18 03:43:35.304 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:35.304 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:35.304 -07 000000487 INF: FPGA: Recv ZSGSRD 36520
17-03-18 03:43:35.314 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:35.314 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:35.314 -07 000000012 INF: FPGA: Recv ZSGSRD 36518
17-03-18 03:43:35.324 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:35.324 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:35.324 -07 000000462 INF: FPGA: Recv ZSGSRD 36527
17-03-18 03:43:35.334 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:35.334 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:35.334 -07 000000462 INF: FPGA: Recv ZSGSRD 36525
17-03-18 03:43:35.344 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:35.344 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:35.344 -07 000000012 INF: FPGA: Recv ZSGSRD 36530
17-03-18 03:43:35.354 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:35.354 -07 000000608 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:43:35.354 -07 000000012 INF: FPGA: Recv ZPIEZORD 32647
17-03-18 03:43:35.364 -07 000000608 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:35.364 -07 000000608 INF: Z Motor: Piezo is near 49.7 V (nominally 0 to 100 V), expect near 58.3 V, since DAC is at 5.832 V. Piezo Error = -8.6 V.
17-03-18 03:43:35.364 -07 000000608 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.9 um, Read 10 ADC samples: Avg = 36526 (-174.1 uncal um), Error = 0.9 uncal um, Median = 36526 (-174.1 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 36518 (-174.0 uncal um), Max = 36534 (-174.1 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 03:43:35.364 -07 000000608 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36526, posNoise = 8, negNoise = 8
17-03-18 03:43:35.364 -07 000000608 INF: Z Motor: After move to -0.174946, error = -0.000028, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:43:35.364 -07 000000608 INF: Z Motor: Settle wait time = 2431 ms, measure time = 108 ms (allowed 150 ms), total time = 2539 ms
17-03-18 03:43:35.364 -07 000000608 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-18 03:43:35.414 -07 000000608 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 3273 ms
17-03-18 03:43:35.414 -07 000000608 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 03:43:35.414 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:43:35.414 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:43:35.424 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:43:35.424 -07 000000012 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:43:35.424 -07 000000608 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 03:43:35.424 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:43:35.424 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 03:43:35.424 -07 000000608 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 03:43:35.424 -07 000000608 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 03:43:35.424 -07 000000608 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 03:43:35.434 -07 000000608 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 03:43:35.434 -07 000000608 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-18 03:43:35.434 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 03:43:35.474 -07 000000487 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 03:43:35.774 -07 000000608 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 03:43:35.774 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 03:43:35.774 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 03:43:35.784 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 661079536, 0x0, 559484976) start.
17-03-18 03:43:35.824 -07 000000608 INF: FPGA: Recv @CAMSNAP 380
17-03-18 03:43:35.824 -07 000000569 INF: FPGA: Recv CAMSNAP
17-03-18 03:43:35.824 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 380 ms to get response, and 386 ms overall
17-03-18 03:43:35.904 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 661079536, 0x0, 559484976) end. Duration was 124 ms.
17-03-18 03:43:35.904 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:43:35.904 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 03:43:35.904 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 127 ms.
17-03-18 03:43:35.924 -07 000000382 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 03:43:35.924 -07 000000474 INF: Autofocus start
17-03-18 03:43:35.924 -07 000000474 INF: MeasureProfile start
17-03-18 03:43:35.924 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-18 03:43:35.934 -07 000000382 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 03:43:35.934 -07 000000382 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 03:43:35.934 -07 000000474 INF: MeasureProfile done
17-03-18 03:43:35.934 -07 000000474 INF: X=32  Z correction [um]=0.09220707
17-03-18 03:43:35.934 -07 000000474 INF: Autofocus finished
17-03-18 03:43:36.134 -07 000000487 INF: FPGA: Recv FOCMRRIMG
17-03-18 03:43:36.134 -07 000000382 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 03:43:36.134 -07 000000610 INF: ------------ Scan Snapping tile 11 at Y-position 68.205078125, Z-position -0.174974124701096. ----------
17-03-18 03:43:36.134 -07 000000610 INF: Cycle	116	Tile	11	Exposure Settings		A	410	G	197	T	197	C	410
17-03-18 03:43:36.144 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36750, sync = True, waitForSettling = True)
17-03-18 03:43:36.144 -07 000000610 INF: Z Motor: Moving to -0.168231 mm, started at -0.174974 mm, distance = 6.74 um
17-03-18 03:43:36.144 -07 000000610 INF: FPGA: Xmit ZDACW 36750\n [Z Motor]
17-03-18 03:43:36.144 -07 000000608 INF: FPGA: Recv ZDACW
17-03-18 03:43:36.154 -07 000000610 INF: FPGA: 'ZDACW 36750' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 03:43:36.154 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:43:36.154 -07 000000437 INF: FPGA: Recv ZDACR 36750
17-03-18 03:43:36.164 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:36.164 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 03:43:36.314 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:36.314 -07 000000487 INF: FPGA: Recv ZSGSRD 35481
17-03-18 03:43:36.324 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:43:36.324 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:36.324 -07 000000462 INF: FPGA: Recv ZSGSRD 35475
17-03-18 03:43:36.334 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:36.334 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:36.334 -07 000000437 INF: FPGA: Recv ZSGSRD 35475
17-03-18 03:43:36.344 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:36.344 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:36.344 -07 000000569 INF: FPGA: Recv ZSGSRD 35479
17-03-18 03:43:36.354 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:36.354 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:36.354 -07 000000474 INF: FPGA: Recv ZSGSRD 35481
17-03-18 03:43:36.364 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:36.364 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:36.364 -07 000000382 INF: FPGA: Recv ZSGSRD 35477
17-03-18 03:43:36.374 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:36.374 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:36.374 -07 000000012 INF: FPGA: Recv ZSGSRD 35475
17-03-18 03:43:36.384 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:36.384 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:36.384 -07 000000474 INF: FPGA: Recv ZSGSRD 35479
17-03-18 03:43:36.394 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:36.394 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:36.394 -07 000000474 INF: FPGA: Recv ZSGSRD 35486
17-03-18 03:43:36.404 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:36.404 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:36.404 -07 000000487 INF: FPGA: Recv ZSGSRD 35478
17-03-18 03:43:36.414 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:36.414 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:43:36.414 -07 000000462 INF: FPGA: Recv ZPIEZORD 31219
17-03-18 03:43:36.424 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:36.424 -07 000000610 INF: Z Motor: Piezo is near 46.7 V (nominally 0 to 100 V), expect near 56.1 V, since DAC is at 5.608 V. Piezo Error = -9.4 V.
17-03-18 03:43:36.424 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.2 um, Read 10 ADC samples: Avg = 35479 (-167.4 uncal um), Error = 0.9 uncal um, Median = 35478 (-167.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35475 (-167.4 uncal um), Max = 35486 (-167.4 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 03:43:36.424 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35479, posNoise = 7, negNoise = 4
17-03-18 03:43:36.424 -07 000000610 INF: Z Motor: After move to -0.168231, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:43:36.424 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 03:43:36.424 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:43:36.424 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:43:36.424 -07 000000474 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:43:36.424 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:43:36.424 -07 000000487 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 03:43:36.424 -07 000000487 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 03:43:36.424 -07 000000608 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 03:43:36.424 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:43:36.424 -07 000000487 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 03:43:36.424 -07 000000487 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 03:43:36.424 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 03:43:36.424 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 03:43:36.434 -07 000000487 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 03:43:36.434 -07 000000487 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 03:43:36.434 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 03:43:36.434 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 03:43:36.444 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 13 ms.
17-03-18 03:43:36.444 -07 000000608 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 19 ms.
17-03-18 03:43:36.444 -07 000000487 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms.
17-03-18 03:43:36.444 -07 000000487 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 19 ms.
17-03-18 03:43:36.444 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 410 410 197 197 36927 150\n [Camera]
17-03-18 03:43:36.604 -07 000000382 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 03:43:36.604 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 115. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1671, R2=1741, Total=3412. Warn if over 250 bubbles per interval.
17-03-18 03:43:36.644 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 03:43:37.004 -07 000000608 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 116, FrontChillerTemperature: 4.005817,
17-03-18 03:43:37.054 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 602
17-03-18 03:43:37.054 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 602
17-03-18 03:43:37.054 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:43:37.054 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:43:37.054 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-18 03:43:37.064 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 602
17-03-18 03:43:37.064 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 602
17-03-18 03:43:37.064 -07 000000487 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:43:37.064 -07 000000487 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:43:37.064 -07 000000487 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-18 03:43:37.254 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36927 795
17-03-18 03:43:37.394 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP turning grn on 945
17-03-18 03:43:37.454 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 400 ms.
17-03-18 03:43:37.454 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 03:43:37.454 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:43:37.464 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:43:37.464 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 03:43:37.464 -07 000000487 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 401 ms.
17-03-18 03:43:37.464 -07 000000487 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 03:43:37.464 -07 000000487 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:43:37.464 -07 000000487 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:43:37.474 -07 000000487 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-18 03:43:37.594 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1142
17-03-18 03:43:37.594 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1142
17-03-18 03:43:37.594 -07 000000437 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:43:37.714 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1142
17-03-18 03:43:37.714 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1142
17-03-18 03:43:37.714 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:43:37.714 -07 000000437 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:43:37.714 -07 000000437 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 03:43:37.714 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:43:37.714 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) start.
17-03-18 03:43:37.784 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP 1335
17-03-18 03:43:37.784 -07 000000487 INF: FPGA: Recv CAMDBLSNAP
17-03-18 03:43:37.784 -07 000000610 INF: FPGA: 'CAMDBLSNAP 410 410 197 197 36927 150' command took 2 ms to send, 1329 ms to get response, and 1341 ms overall
17-03-18 03:43:37.794 -07 000000610 INF: Skipping AutoFocus in Tile 12: adopting Best-Z from the cache: -0.168889
17-03-18 03:43:37.794 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.0426 mm, moving Z to -0.16889 mm
17-03-18 03:43:37.794 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 03:43:37.794 -07 000000569 INF: Y Motor: Entering MoveAbsStepped (target = 110468 steps, sync = True, waitForSettling = True)
17-03-18 03:43:37.794 -07 000000569 INF: Y Motor: Moving to 69.0426 mm, started at 68.2051 mm, delta = 0.8375 mm
17-03-18 03:43:37.794 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:43:37.794 -07 000000462 INF: Z Motor: Entering MoveAbsStepped (DAC = 36894, sync = True, waitForSettling = False)
17-03-18 03:43:37.794 -07 000000462 INF: Z Motor: Moving to -0.168890 mm, started at -0.168248 mm, distance = -0.64 um
17-03-18 03:43:37.794 -07 000000606 INF: FPGA: Recv YRDPOS 139684
17-03-18 03:43:37.804 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 03:43:37.804 -07 000000569 INF: Y Motor: Encoder = 139684 = motor step 109128.1 = 68.2051 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:43:37.804 -07 000000569 INF: Y Motor: Last commanded position = 68.2126 mm (109140.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 03:43:37.804 -07 000000569 INF: Y Motor: Moving 1340 steps-15
17-03-18 03:43:37.804 -07 000000462 INF: FPGA: Xmit ZDACW 36894\n [Z Motor]
17-03-18 03:43:37.804 -07 000000474 INF: FPGA: Recv ZDACW
17-03-18 03:43:37.814 -07 000000462 INF: FPGA: 'ZDACW 36894' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-18 03:43:37.814 -07 000000569 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 03:43:37.824 -07 000000462 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:43:37.824 -07 000000611 INF: FPGA: Recv ZDACR 36894
17-03-18 03:43:37.834 -07 000000462 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 03:43:37.834 -07 000000462 INF: Z Motor: MoveAbsStepped took 35 ms (did NOT wait for settling yet))
17-03-18 03:43:38.114 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) end. Duration was 397 ms.
17-03-18 03:43:38.114 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 03:43:38.114 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:43:38.114 -07 000000437 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 402 ms.
17-03-18 03:43:38.114 -07 000000437 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 03:43:38.114 -07 000000437 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:43:38.114 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 03:43:38.114 -07 000000437 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 03:43:38.114 -07 000000437 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 521 ms.
17-03-18 03:43:38.124 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-18 03:43:38.184 -07 000000606 INF: FPGA: Recv YMVTILE
17-03-18 03:43:38.184 -07 000000569 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-18 03:43:38.234 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:43:38.234 -07 000000474 INF: FPGA: Recv YRDPOS 141368
17-03-18 03:43:38.244 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 03:43:38.244 -07 000000569 INF: Y Motor: Encoder = 141368 = motor step 110443.8 = 69.0273 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:43:38.244 -07 000000569 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-18 03:43:38.244 -07 000000569 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.838 mm, average velocity = 2.159 mm/sec
17-03-18 03:43:39.194 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:43:39.194 -07 000000382 INF: FPGA: Recv YRDPOS 141368
17-03-18 03:43:39.204 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:39.204 -07 000000569 INF: Y Motor: Encoder = 141368 = motor step 110443.8 = 69.0273 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:43:39.234 -07 000000569 INF: Y Motor: After move to 69.042610, error = -0.015266, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 03:43:39.234 -07 000000569 INF: Y Motor: Position error after settling (table move) = -31 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 03:43:39.234 -07 000000569 INF: Y Motor: Moved to 69.0273 after 1439 ms (table move)
17-03-18 03:43:39.234 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.168890 mm (DAC = 36894)
17-03-18 03:43:39.244 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:39.244 -07 000000474 INF: FPGA: Recv ZSGSRD 35583
17-03-18 03:43:39.254 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-18 03:43:39.254 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:39.254 -07 000000569 INF: FPGA: Recv ZSGSRD 35583
17-03-18 03:43:39.264 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:39.264 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:39.264 -07 000000474 INF: FPGA: Recv ZSGSRD 35584
17-03-18 03:43:39.274 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:39.274 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:39.274 -07 000000569 INF: FPGA: Recv ZSGSRD 35580
17-03-18 03:43:39.284 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:39.284 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:39.284 -07 000000569 INF: FPGA: Recv ZSGSRD 35576
17-03-18 03:43:39.294 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:39.294 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:39.294 -07 000000437 INF: FPGA: Recv ZSGSRD 35580
17-03-18 03:43:39.304 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:39.304 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:39.304 -07 000000569 INF: FPGA: Recv ZSGSRD 35577
17-03-18 03:43:39.314 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:39.314 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:39.314 -07 000000382 INF: FPGA: Recv ZSGSRD 35585
17-03-18 03:43:39.324 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:39.324 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:39.324 -07 000000474 INF: FPGA: Recv ZSGSRD 35576
17-03-18 03:43:39.334 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:39.334 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:39.334 -07 000000569 INF: FPGA: Recv ZSGSRD 35584
17-03-18 03:43:39.344 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:39.344 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:43:39.344 -07 000000474 INF: FPGA: Recv ZPIEZORD 31397
17-03-18 03:43:39.354 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:39.354 -07 000000610 INF: Z Motor: Piezo is near 47.1 V (nominally 0 to 100 V), expect near 56.3 V, since DAC is at 5.630 V. Piezo Error = -9.2 V.
17-03-18 03:43:39.354 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.9 um, Read 10 ADC samples: Avg = 35581 (-168.0 uncal um), Error = 0.9 uncal um, Median = 35582 (-168.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35576 (-168.0 uncal um), Max = 35585 (-168.1 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 03:43:39.354 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35581, posNoise = 4, negNoise = 5
17-03-18 03:43:39.354 -07 000000610 INF: Z Motor: After move to -0.168890, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:43:39.354 -07 000000610 INF: Z Motor: Settle wait time = 1442 ms, measure time = 114 ms (allowed 150 ms), total time = 1556 ms
17-03-18 03:43:39.354 -07 000000610 INF: Z Motor: Waiting extra 36 ms after reading position to reach expected total of 150 ms
17-03-18 03:43:39.394 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1598 ms
17-03-18 03:43:39.394 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 03:43:39.394 -07 000000610 INF: ------------ Scan Snapping tile 12 at Y-position 69.02734375, Z-position -0.168903244227132. ----------
17-03-18 03:43:39.394 -07 000000610 INF: Cycle	116	Tile	12	Exposure Settings		A	410	G	197	T	197	C	410
17-03-18 03:43:39.394 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36717, sync = True, waitForSettling = True)
17-03-18 03:43:39.394 -07 000000610 INF: Z Motor: Moving to -0.168080 mm, started at -0.168903 mm, distance = 0.82 um
17-03-18 03:43:39.394 -07 000000610 INF: FPGA: Xmit ZDACW 36717\n [Z Motor]
17-03-18 03:43:39.394 -07 000000382 INF: FPGA: Recv ZDACW
17-03-18 03:43:39.404 -07 000000610 INF: FPGA: 'ZDACW 36717' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 03:43:39.404 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:43:39.404 -07 000000569 INF: FPGA: Recv ZDACR 36717
17-03-18 03:43:39.414 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:39.414 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 03:43:39.564 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:39.564 -07 000000474 INF: FPGA: Recv ZSGSRD 35461
17-03-18 03:43:39.574 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:43:39.574 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:39.574 -07 000000606 INF: FPGA: Recv ZSGSRD 35453
17-03-18 03:43:39.584 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:39.584 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:39.584 -07 000000474 INF: FPGA: Recv ZSGSRD 35459
17-03-18 03:43:39.594 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:39.594 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:39.594 -07 000000606 INF: FPGA: Recv ZSGSRD 35453
17-03-18 03:43:39.604 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:39.604 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:39.604 -07 000000606 INF: FPGA: Recv ZSGSRD 35452
17-03-18 03:43:39.614 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:39.614 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:39.614 -07 000000382 INF: FPGA: Recv ZSGSRD 35456
17-03-18 03:43:39.624 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:39.624 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:39.624 -07 000000474 INF: FPGA: Recv ZSGSRD 35455
17-03-18 03:43:39.634 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:39.634 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:39.634 -07 000000474 INF: FPGA: Recv ZSGSRD 35459
17-03-18 03:43:39.644 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:39.644 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:39.644 -07 000000606 INF: FPGA: Recv ZSGSRD 35455
17-03-18 03:43:39.654 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:39.654 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:39.654 -07 000000474 INF: FPGA: Recv ZSGSRD 35454
17-03-18 03:43:39.664 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:39.664 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:43:39.664 -07 000000569 INF: FPGA: Recv ZPIEZORD 31232
17-03-18 03:43:39.674 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:39.674 -07 000000610 INF: Z Motor: Piezo is near 46.7 V (nominally 0 to 100 V), expect near 56.0 V, since DAC is at 5.603 V. Piezo Error = -9.3 V.
17-03-18 03:43:39.674 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.1 um, Read 10 ADC samples: Avg = 35456 (-167.2 uncal um), Error = 0.8 uncal um, Median = 35455 (-167.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35452 (-167.2 uncal um), Max = 35461 (-167.3 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 03:43:39.674 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35456, posNoise = 5, negNoise = 4
17-03-18 03:43:39.674 -07 000000610 INF: Z Motor: After move to -0.168080, error = -0.000021, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:43:39.674 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-18 03:43:39.674 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:43:39.674 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:43:39.674 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:43:39.674 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 03:43:39.674 -07 000000437 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:43:39.674 -07 000000606 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 03:43:39.674 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:43:39.674 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 03:43:39.674 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 03:43:39.674 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 03:43:39.674 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-18 03:43:39.674 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 03:43:39.674 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 03:43:39.674 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 03:43:39.684 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 03:43:39.684 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 03:43:39.684 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 03:43:39.684 -07 000000606 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 03:43:39.694 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 03:43:39.694 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 17 ms.
17-03-18 03:43:39.694 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 410 410 197 197 36894 150\n [Camera]
17-03-18 03:43:39.894 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 03:43:40.304 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 602
17-03-18 03:43:40.304 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 602
17-03-18 03:43:40.304 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:43:40.304 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 602
17-03-18 03:43:40.304 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 602
17-03-18 03:43:40.304 -07 000000437 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:43:40.314 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:43:40.314 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-18 03:43:40.314 -07 000000437 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:43:40.314 -07 000000437 INF: Camera: sBCa_ReadImage(785074704, 2199785120, 0x0, 418435064) start.
17-03-18 03:43:40.494 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36894 795
17-03-18 03:43:40.644 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning grn on 945
17-03-18 03:43:40.704 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 395 ms.
17-03-18 03:43:40.704 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 03:43:40.704 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:43:40.704 -07 000000437 INF: Camera: sBCa_ReadImage(785074704, 2199785120, 0x0, 418435064) end. Duration was 393 ms.
17-03-18 03:43:40.704 -07 000000437 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-18 03:43:40.704 -07 000000437 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:43:40.714 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:43:40.714 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 03:43:40.714 -07 000000437 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:43:40.724 -07 000000437 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-18 03:43:40.844 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1142
17-03-18 03:43:40.844 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1142
17-03-18 03:43:40.844 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:43:40.844 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1142
17-03-18 03:43:40.844 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:43:40.844 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1142
17-03-18 03:43:40.844 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) start.
17-03-18 03:43:40.844 -07 000000474 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:43:40.844 -07 000000474 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:43:40.844 -07 000000474 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) start.
17-03-18 03:43:41.034 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP 1335
17-03-18 03:43:41.034 -07 000000382 INF: FPGA: Recv CAMDBLSNAP
17-03-18 03:43:41.034 -07 000000610 INF: FPGA: 'CAMDBLSNAP 410 410 197 197 36894 150' command took 2 ms to send, 1337 ms to get response, and 1341 ms overall
17-03-18 03:43:41.034 -07 000000610 INF: Skipping AutoFocus in Tile 13: adopting Best-Z from the cache: -0.168418
17-03-18 03:43:41.034 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.8726 mm, moving Z to -0.16842 mm
17-03-18 03:43:41.034 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 03:43:41.044 -07 000000437 INF: Y Motor: Entering MoveAbsStepped (target = 111796 steps, sync = True, waitForSettling = True)
17-03-18 03:43:41.044 -07 000000437 INF: Y Motor: Moving to 69.8726 mm, started at 69.0273 mm, delta = 0.8453 mm
17-03-18 03:43:41.044 -07 000000437 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:43:41.044 -07 000000625 INF: Z Motor: Entering MoveAbsStepped (DAC = 36791, sync = True, waitForSettling = False)
17-03-18 03:43:41.044 -07 000000625 INF: Z Motor: Moving to -0.168418 mm, started at -0.168100 mm, distance = -0.32 um
17-03-18 03:43:41.044 -07 000000608 INF: FPGA: Recv YRDPOS 141368
17-03-18 03:43:41.054 -07 000000437 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 03:43:41.054 -07 000000437 INF: Y Motor: Encoder = 141368 = motor step 110443.8 = 69.0273 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:43:41.054 -07 000000437 INF: Y Motor: Last commanded position = 69.0426 mm (110468.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 03:43:41.054 -07 000000437 INF: Y Motor: Moving 1352 steps-31
17-03-18 03:43:41.054 -07 000000625 INF: FPGA: Xmit ZDACW 36791\n [Z Motor]
17-03-18 03:43:41.054 -07 000000581 INF: FPGA: Recv ZDACW
17-03-18 03:43:41.064 -07 000000625 INF: FPGA: 'ZDACW 36791' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-18 03:43:41.064 -07 000000437 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 03:43:41.074 -07 000000625 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:43:41.074 -07 000000569 INF: FPGA: Recv ZDACR 36791
17-03-18 03:43:41.084 -07 000000625 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 03:43:41.084 -07 000000625 INF: Z Motor: MoveAbsStepped took 37 ms (did NOT wait for settling yet))
17-03-18 03:43:41.254 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) end. Duration was 404 ms.
17-03-18 03:43:41.254 -07 000000474 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) end. Duration was 403 ms.
17-03-18 03:43:41.254 -07 000000474 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-18 03:43:41.254 -07 000000474 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:43:41.254 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 03:43:41.254 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:43:41.254 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 03:43:41.254 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 03:43:41.254 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 410 ms.
17-03-18 03:43:41.264 -07 000000474 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 415 ms.
17-03-18 03:43:41.434 -07 000000512 INF: FPGA: Recv YMVTILE
17-03-18 03:43:41.434 -07 000000437 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-18 03:43:41.484 -07 000000437 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:43:41.484 -07 000000569 INF: FPGA: Recv YRDPOS 143080
17-03-18 03:43:41.494 -07 000000437 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 03:43:41.494 -07 000000437 INF: Y Motor: Encoder = 143080 = motor step 111781.3 = 69.8633 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:43:41.494 -07 000000437 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm)
17-03-18 03:43:41.494 -07 000000437 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.845 mm, average velocity = 2.179 mm/sec
17-03-18 03:43:41.604 -07 000000479 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 03:43:41.604 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 115. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1671, R2=1741, Total=3412. Warn if over 250 bubbles per interval.
17-03-18 03:43:42.364 -07 000000569 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 116, FrontChillerTemperature: 3.983999,
17-03-18 03:43:42.444 -07 000000437 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:43:42.444 -07 000000569 INF: FPGA: Recv YRDPOS 143080
17-03-18 03:43:42.454 -07 000000437 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:42.454 -07 000000437 INF: Y Motor: Encoder = 143080 = motor step 111781.3 = 69.8633 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:43:42.474 -07 000000437 INF: Y Motor: After move to 69.872612, error = -0.009331, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 03:43:42.474 -07 000000437 INF: Y Motor: Position error after settling (table move) = -19 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 03:43:42.474 -07 000000437 INF: Y Motor: Moved to 69.8633 after 1436 ms (table move)
17-03-18 03:43:42.484 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.168418 mm (DAC = 36791)
17-03-18 03:43:42.484 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:42.484 -07 000000512 INF: FPGA: Recv ZSGSRD 35507
17-03-18 03:43:42.494 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 03:43:42.494 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:42.494 -07 000000608 INF: FPGA: Recv ZSGSRD 35510
17-03-18 03:43:42.504 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:42.504 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:42.504 -07 000000606 INF: FPGA: Recv ZSGSRD 35512
17-03-18 03:43:42.514 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:42.514 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:42.514 -07 000000474 INF: FPGA: Recv ZSGSRD 35509
17-03-18 03:43:42.524 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:42.524 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:42.524 -07 000000462 INF: FPGA: Recv ZSGSRD 35508
17-03-18 03:43:42.534 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:42.534 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:42.534 -07 000000382 INF: FPGA: Recv ZSGSRD 35499
17-03-18 03:43:42.544 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:42.544 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:42.544 -07 000000382 INF: FPGA: Recv ZSGSRD 35500
17-03-18 03:43:42.554 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:42.554 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:42.554 -07 000000382 INF: FPGA: Recv ZSGSRD 35504
17-03-18 03:43:42.564 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:42.564 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:42.564 -07 000000569 INF: FPGA: Recv ZSGSRD 35508
17-03-18 03:43:42.574 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:42.574 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:42.574 -07 000000569 INF: FPGA: Recv ZSGSRD 35511
17-03-18 03:43:42.584 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:42.584 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:43:42.584 -07 000000569 INF: FPGA: Recv ZPIEZORD 31309
17-03-18 03:43:42.594 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:42.594 -07 000000610 INF: Z Motor: Piezo is near 46.9 V (nominally 0 to 100 V), expect near 56.1 V, since DAC is at 5.614 V. Piezo Error = -9.3 V.
17-03-18 03:43:42.594 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.4 um, Read 10 ADC samples: Avg = 35507 (-167.6 uncal um), Error = 0.9 uncal um, Median = 35508 (-167.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 35499 (-167.5 uncal um), Max = 35512 (-167.6 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 03:43:42.594 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35507, posNoise = 5, negNoise = 8
17-03-18 03:43:42.594 -07 000000610 INF: Z Motor: After move to -0.168418, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:43:42.594 -07 000000610 INF: Z Motor: Settle wait time = 1439 ms, measure time = 108 ms (allowed 150 ms), total time = 1547 ms
17-03-18 03:43:42.594 -07 000000610 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-18 03:43:42.644 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1600 ms
17-03-18 03:43:42.644 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 03:43:42.644 -07 000000610 INF: ------------ Scan Snapping tile 13 at Y-position 69.86328125, Z-position -0.168427852528641. ----------
17-03-18 03:43:42.644 -07 000000610 INF: Cycle	116	Tile	13	Exposure Settings		A	410	G	197	T	197	C	410
17-03-18 03:43:42.644 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36614, sync = True, waitForSettling = True)
17-03-18 03:43:42.644 -07 000000610 INF: Z Motor: Moving to -0.167608 mm, started at -0.168428 mm, distance = 0.82 um
17-03-18 03:43:42.644 -07 000000610 INF: FPGA: Xmit ZDACW 36614\n [Z Motor]
17-03-18 03:43:42.644 -07 000000462 INF: FPGA: Recv ZDACW
17-03-18 03:43:42.654 -07 000000610 INF: FPGA: 'ZDACW 36614' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 03:43:42.654 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:43:42.654 -07 000000382 INF: FPGA: Recv ZDACR 36614
17-03-18 03:43:42.664 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:42.664 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 03:43:42.814 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:42.814 -07 000000487 INF: FPGA: Recv ZSGSRD 35385
17-03-18 03:43:42.824 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:43:42.824 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:42.824 -07 000000608 INF: FPGA: Recv ZSGSRD 35381
17-03-18 03:43:42.834 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:42.834 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:42.834 -07 000000611 INF: FPGA: Recv ZSGSRD 35383
17-03-18 03:43:42.844 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:42.844 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:42.844 -07 000000487 INF: FPGA: Recv ZSGSRD 35382
17-03-18 03:43:42.854 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:42.854 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:42.854 -07 000000479 INF: FPGA: Recv ZSGSRD 35382
17-03-18 03:43:42.864 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:42.864 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:42.864 -07 000000625 INF: FPGA: Recv ZSGSRD 35384
17-03-18 03:43:42.874 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:42.874 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:42.874 -07 000000479 INF: FPGA: Recv ZSGSRD 35376
17-03-18 03:43:42.884 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:42.884 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:42.884 -07 000000479 INF: FPGA: Recv ZSGSRD 35381
17-03-18 03:43:42.894 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:42.894 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:42.894 -07 000000608 INF: FPGA: Recv ZSGSRD 35383
17-03-18 03:43:42.904 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:42.904 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:42.904 -07 000000625 INF: FPGA: Recv ZSGSRD 35384
17-03-18 03:43:42.914 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:42.914 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:43:42.914 -07 000000487 INF: FPGA: Recv ZPIEZORD 31124
17-03-18 03:43:42.924 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:42.924 -07 000000610 INF: Z Motor: Piezo is near 46.5 V (nominally 0 to 100 V), expect near 55.9 V, since DAC is at 5.587 V. Piezo Error = -9.4 V.
17-03-18 03:43:42.924 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.6 um, Read 10 ADC samples: Avg = 35382 (-166.8 uncal um), Error = 0.9 uncal um, Median = 35382 (-166.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35376 (-166.7 uncal um), Max = 35385 (-166.8 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 03:43:42.924 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35382, posNoise = 3, negNoise = 6
17-03-18 03:43:42.924 -07 000000610 INF: Z Motor: After move to -0.167608, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:43:42.924 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-18 03:43:42.924 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:43:42.924 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:43:42.924 -07 000000611 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:43:42.924 -07 000000479 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:43:42.924 -07 000000608 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 03:43:42.924 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:43:42.924 -07 000000487 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 03:43:42.924 -07 000000487 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 03:43:42.924 -07 000000487 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 03:43:42.924 -07 000000487 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 03:43:42.924 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 03:43:42.924 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 03:43:42.934 -07 000000487 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 03:43:42.934 -07 000000487 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 03:43:42.934 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-18 03:43:42.934 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 03:43:42.944 -07 000000487 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-18 03:43:42.944 -07 000000487 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 03:43:42.944 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 03:43:42.944 -07 000000608 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 03:43:42.944 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 410 410 197 197 36791 150\n [Camera]
17-03-18 03:43:43.144 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 03:43:43.554 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 602
17-03-18 03:43:43.554 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 602
17-03-18 03:43:43.564 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:43:43.564 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 602
17-03-18 03:43:43.564 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 602
17-03-18 03:43:43.564 -07 000000487 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:43:43.564 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:43:43.564 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 591793880, 0x0, 391868352) start.
17-03-18 03:43:43.564 -07 000000487 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:43:43.564 -07 000000487 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 03:43:43.754 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36791 795
17-03-18 03:43:43.904 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP turning grn on 945
17-03-18 03:43:43.964 -07 000000487 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 400 ms.
17-03-18 03:43:43.964 -07 000000487 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 03:43:43.964 -07 000000487 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:43:43.974 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 591793880, 0x0, 391868352) end. Duration was 410 ms.
17-03-18 03:43:43.974 -07 000000487 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 03:43:43.974 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 410 ms.
17-03-18 03:43:43.974 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:43:43.984 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 03:43:43.984 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 420 ms.
17-03-18 03:43:43.994 -07 000000487 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 426 ms.
17-03-18 03:43:44.094 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1142
17-03-18 03:43:44.094 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1142
17-03-18 03:43:44.104 -07 000000611 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:43:44.104 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1142
17-03-18 03:43:44.104 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1142
17-03-18 03:43:44.104 -07 000000479 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:43:44.104 -07 000000479 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:43:44.104 -07 000000479 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 03:43:44.104 -07 000000611 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:43:44.104 -07 000000611 INF: Camera: sBCa_ReadImage(785074288, 2199785120, 0x0, 391868352) start.
17-03-18 03:43:44.294 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP 1334
17-03-18 03:43:44.294 -07 000000487 INF: FPGA: Recv CAMDBLSNAP
17-03-18 03:43:44.294 -07 000000610 INF: FPGA: 'CAMDBLSNAP 410 410 197 197 36791 150' command took 2 ms to send, 1331 ms to get response, and 1341 ms overall
17-03-18 03:43:44.294 -07 000000610 INF: Skipping AutoFocus in Tile 14: adopting Best-Z from the cache: -0.167552
17-03-18 03:43:44.294 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 70.7026 mm, moving Z to -0.16755 mm
17-03-18 03:43:44.294 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 03:43:44.294 -07 000000625 INF: Y Motor: Entering MoveAbsStepped (target = 113124 steps, sync = True, waitForSettling = True)
17-03-18 03:43:44.294 -07 000000625 INF: Y Motor: Moving to 70.7026 mm, started at 69.8633 mm, delta = 0.8393 mm
17-03-18 03:43:44.294 -07 000000625 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:43:44.294 -07 000000487 INF: Z Motor: Entering MoveAbsStepped (DAC = 36602, sync = True, waitForSettling = False)
17-03-18 03:43:44.294 -07 000000487 INF: Z Motor: Moving to -0.167553 mm, started at -0.167625 mm, distance = 0.07 um
17-03-18 03:43:44.294 -07 000000462 INF: FPGA: Recv YRDPOS 143080
17-03-18 03:43:44.304 -07 000000625 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 03:43:44.304 -07 000000625 INF: Y Motor: Encoder = 143080 = motor step 111781.3 = 69.8633 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:43:44.304 -07 000000625 INF: Y Motor: Last commanded position = 69.8726 mm (111796.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 03:43:44.304 -07 000000625 INF: Y Motor: Moving 1343 steps-19
17-03-18 03:43:44.304 -07 000000487 INF: FPGA: Xmit ZDACW 36602\n [Z Motor]
17-03-18 03:43:44.304 -07 000000606 INF: FPGA: Recv ZDACW
17-03-18 03:43:44.314 -07 000000487 INF: FPGA: 'ZDACW 36602' command took 1 ms to send, 0 ms to get response, and 11 ms overall
17-03-18 03:43:44.314 -07 000000625 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 03:43:44.324 -07 000000487 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:43:44.334 -07 000000606 INF: FPGA: Recv ZDACR 36602
17-03-18 03:43:44.334 -07 000000487 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 03:43:44.334 -07 000000487 INF: Z Motor: MoveAbsStepped took 32 ms (did NOT wait for settling yet))
17-03-18 03:43:44.484 -07 000000611 INF: Camera: sBCa_ReadImage(785074288, 2199785120, 0x0, 391868352) end. Duration was 374 ms.
17-03-18 03:43:44.484 -07 000000611 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-18 03:43:44.484 -07 000000611 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:43:44.484 -07 000000479 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 378 ms.
17-03-18 03:43:44.484 -07 000000479 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-18 03:43:44.484 -07 000000479 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:43:44.484 -07 000000611 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 03:43:44.484 -07 000000611 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-18 03:43:44.484 -07 000000479 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 03:43:44.494 -07 000000479 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-18 03:43:44.684 -07 000000611 INF: FPGA: Recv YMVTILE
17-03-18 03:43:44.684 -07 000000625 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-18 03:43:44.734 -07 000000625 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:43:44.744 -07 000000462 INF: FPGA: Recv YRDPOS 144770
17-03-18 03:43:44.744 -07 000000625 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 03:43:44.744 -07 000000625 INF: Y Motor: Encoder = 144770 = motor step 113101.6 = 70.6885 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:43:44.744 -07 000000625 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-18 03:43:44.744 -07 000000625 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.839 mm, average velocity = 2.163 mm/sec
17-03-18 03:43:45.694 -07 000000625 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:43:45.694 -07 000000487 INF: FPGA: Recv YRDPOS 144770
17-03-18 03:43:45.704 -07 000000625 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:45.704 -07 000000625 INF: Y Motor: Encoder = 144770 = motor step 113101.6 = 70.6885 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:43:45.734 -07 000000625 INF: Y Motor: After move to 70.702606, error = -0.014130, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 03:43:45.734 -07 000000625 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 03:43:45.734 -07 000000625 INF: Y Motor: Moved to 70.6885 after 1434 ms (table move)
17-03-18 03:43:45.734 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.167553 mm (DAC = 36602)
17-03-18 03:43:45.734 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:45.734 -07 000000479 INF: FPGA: Recv ZSGSRD 35374
17-03-18 03:43:45.744 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 03:43:45.744 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:45.744 -07 000000611 INF: FPGA: Recv ZSGSRD 35371
17-03-18 03:43:45.754 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:45.754 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:45.754 -07 000000479 INF: FPGA: Recv ZSGSRD 35374
17-03-18 03:43:45.764 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:45.764 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:45.764 -07 000000608 INF: FPGA: Recv ZSGSRD 35366
17-03-18 03:43:45.774 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:45.774 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:45.774 -07 000000625 INF: FPGA: Recv ZSGSRD 35378
17-03-18 03:43:45.784 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:45.784 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:45.784 -07 000000611 INF: FPGA: Recv ZSGSRD 35369
17-03-18 03:43:45.794 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:45.794 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:45.794 -07 000000625 INF: FPGA: Recv ZSGSRD 35367
17-03-18 03:43:45.804 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:45.804 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:45.804 -07 000000462 INF: FPGA: Recv ZSGSRD 35372
17-03-18 03:43:45.814 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:45.814 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:45.814 -07 000000608 INF: FPGA: Recv ZSGSRD 35370
17-03-18 03:43:45.824 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:45.824 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:45.834 -07 000000606 INF: FPGA: Recv ZSGSRD 35375
17-03-18 03:43:45.834 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:43:45.834 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:43:45.834 -07 000000608 INF: FPGA: Recv ZPIEZORD 31155
17-03-18 03:43:45.844 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:45.844 -07 000000610 INF: Z Motor: Piezo is near 46.6 V (nominally 0 to 100 V), expect near 55.9 V, since DAC is at 5.585 V. Piezo Error = -9.3 V.
17-03-18 03:43:45.844 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.6 um, Read 10 ADC samples: Avg = 35372 (-166.7 uncal um), Error = 0.9 uncal um, Median = 35372 (-166.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35366 (-166.7 uncal um), Max = 35378 (-166.7 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 03:43:45.844 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35372, posNoise = 6, negNoise = 6
17-03-18 03:43:45.844 -07 000000610 INF: Z Motor: After move to -0.167553, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:43:45.844 -07 000000610 INF: Z Motor: Settle wait time = 1434 ms, measure time = 108 ms (allowed 150 ms), total time = 1542 ms
17-03-18 03:43:45.844 -07 000000610 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-18 03:43:45.894 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1596 ms
17-03-18 03:43:45.894 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 03:43:45.894 -07 000000610 INF: ------------ Scan Snapping tile 14 at Y-position 70.6884765625, Z-position -0.167560583889504. ----------
17-03-18 03:43:45.894 -07 000000610 INF: Cycle	116	Tile	14	Exposure Settings		A	410	G	197	T	197	C	410
17-03-18 03:43:45.894 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36425, sync = True, waitForSettling = True)
17-03-18 03:43:45.894 -07 000000610 INF: Z Motor: Moving to -0.166743 mm, started at -0.167561 mm, distance = 0.82 um
17-03-18 03:43:45.894 -07 000000610 INF: FPGA: Xmit ZDACW 36425\n [Z Motor]
17-03-18 03:43:45.894 -07 000000625 INF: FPGA: Recv ZDACW
17-03-18 03:43:45.904 -07 000000610 INF: FPGA: 'ZDACW 36425' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 03:43:45.904 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:43:45.904 -07 000000611 INF: FPGA: Recv ZDACR 36425
17-03-18 03:43:45.914 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:45.914 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 03:43:46.064 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:46.064 -07 000000382 INF: FPGA: Recv ZSGSRD 35248
17-03-18 03:43:46.074 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:43:46.074 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:46.074 -07 000000606 INF: FPGA: Recv ZSGSRD 35248
17-03-18 03:43:46.084 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:46.084 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:46.084 -07 000000608 INF: FPGA: Recv ZSGSRD 35252
17-03-18 03:43:46.094 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:46.094 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:46.094 -07 000000462 INF: FPGA: Recv ZSGSRD 35244
17-03-18 03:43:46.104 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:46.104 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:46.104 -07 000000487 INF: FPGA: Recv ZSGSRD 35243
17-03-18 03:43:46.114 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:46.114 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:46.114 -07 000000462 INF: FPGA: Recv ZSGSRD 35250
17-03-18 03:43:46.124 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 03:43:46.124 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:46.124 -07 000000611 INF: FPGA: Recv ZSGSRD 35247
17-03-18 03:43:46.134 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:46.134 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:46.134 -07 000000625 INF: FPGA: Recv ZSGSRD 35250
17-03-18 03:43:46.144 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:46.144 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:46.144 -07 000000606 INF: FPGA: Recv ZSGSRD 35236
17-03-18 03:43:46.154 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:46.154 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:46.154 -07 000000487 INF: FPGA: Recv ZSGSRD 35244
17-03-18 03:43:46.164 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:46.164 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:43:46.164 -07 000000382 INF: FPGA: Recv ZPIEZORD 31002
17-03-18 03:43:46.174 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:46.174 -07 000000610 INF: Z Motor: Piezo is near 46.2 V (nominally 0 to 100 V), expect near 55.6 V, since DAC is at 5.558 V. Piezo Error = -9.4 V.
17-03-18 03:43:46.174 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.7 um, Read 10 ADC samples: Avg = 35246 (-165.9 uncal um), Error = 0.9 uncal um, Median = 35248 (-165.9 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 35236 (-165.8 uncal um), Max = 35252 (-165.9 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-18 03:43:46.174 -07 000000610 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35246, posNoise = 6, negNoise = 10
17-03-18 03:43:46.174 -07 000000610 INF: Z Motor: After move to -0.166743, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:43:46.174 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-18 03:43:46.174 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:43:46.174 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:43:46.174 -07 000000487 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:43:46.174 -07 000000608 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:43:46.174 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 03:43:46.174 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 03:43:46.174 -07 000000611 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 03:43:46.174 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:43:46.174 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 03:43:46.174 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 03:43:46.174 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 03:43:46.174 -07 000000611 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 03:43:46.174 -07 000000611 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 03:43:46.174 -07 000000611 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 03:43:46.184 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 03:43:46.184 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 03:43:46.194 -07 000000611 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 13 ms.
17-03-18 03:43:46.194 -07 000000611 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 18 ms.
17-03-18 03:43:46.194 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 13 ms.
17-03-18 03:43:46.194 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 18 ms.
17-03-18 03:43:46.194 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 410 410 197 197 36602 150\n [Camera]
17-03-18 03:43:46.394 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 03:43:46.604 -07 000000611 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 03:43:46.604 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 115. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1671, R2=1741, Total=3412. Warn if over 250 bubbles per interval.
17-03-18 03:43:46.804 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 602
17-03-18 03:43:46.804 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 602
17-03-18 03:43:46.804 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:43:46.804 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:43:46.804 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) start.
17-03-18 03:43:46.814 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 602
17-03-18 03:43:46.814 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 602
17-03-18 03:43:46.814 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:43:46.924 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:43:46.924 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) start.
17-03-18 03:43:46.994 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36602 795
17-03-18 03:43:47.144 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP turning grn on 945
17-03-18 03:43:47.184 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) end. Duration was 379 ms.
17-03-18 03:43:47.184 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-18 03:43:47.184 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:43:47.194 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:43:47.194 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-18 03:43:47.294 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) end. Duration was 369 ms.
17-03-18 03:43:47.294 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 369 ms.
17-03-18 03:43:47.294 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:43:47.294 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:43:47.304 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 492 ms.
17-03-18 03:43:47.344 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1142
17-03-18 03:43:47.344 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1142
17-03-18 03:43:47.344 -07 000000487 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:43:47.354 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1142
17-03-18 03:43:47.354 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1142
17-03-18 03:43:47.354 -07 000000611 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:43:47.354 -07 000000487 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:43:47.354 -07 000000487 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-18 03:43:47.354 -07 000000611 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:43:47.354 -07 000000611 INF: Camera: sBCa_ReadImage(785074704, 2199785120, 0x0, 418435064) start.
17-03-18 03:43:47.534 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP 1334
17-03-18 03:43:47.534 -07 000000608 INF: FPGA: Recv CAMDBLSNAP
17-03-18 03:43:47.534 -07 000000610 INF: FPGA: 'CAMDBLSNAP 410 410 197 197 36602 150' command took 2 ms to send, 1339 ms to get response, and 1341 ms overall
17-03-18 03:43:47.544 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 03:43:47.544 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 15 at Y-position 70.6884765625, Z-Position -0.166751133159642. ------
17-03-18 03:43:47.544 -07 000000382 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 03:43:47.544 -07 000000462 INF: Y Motor: MoveYZ optimized starting. Moving Y to 71.5326 mm, moving Z to -0.17347 mm
17-03-18 03:43:47.544 -07 000000462 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 03:43:47.544 -07 000000608 INF: FPGA: Recv FOCMRRCUR 
17-03-18 03:43:47.544 -07 000000608 INF: Y Motor: Entering MoveAbsStepped (target = 114452 steps, sync = True, waitForSettling = True)
17-03-18 03:43:47.544 -07 000000608 INF: Y Motor: Moving to 71.5326 mm, started at 70.6885 mm, delta = 0.8441 mm
17-03-18 03:43:47.554 -07 000000382 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 03:43:47.554 -07 000000382 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 03:43:47.564 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:43:47.724 -07 000000611 INF: Camera: sBCa_ReadImage(785074704, 2199785120, 0x0, 418435064) end. Duration was 371 ms.
17-03-18 03:43:47.724 -07 000000611 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 372 ms.
17-03-18 03:43:47.724 -07 000000611 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:43:47.734 -07 000000487 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 379 ms.
17-03-18 03:43:47.734 -07 000000487 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-18 03:43:47.734 -07 000000487 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:43:47.734 -07 000000611 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:43:47.734 -07 000000487 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:43:47.734 -07 000000487 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-18 03:43:47.734 -07 000000611 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-18 03:43:47.754 -07 000000611 INF: FPGA: Recv YRDPOS 144770
17-03-18 03:43:47.754 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 181 ms to get response, and 202 ms overall
17-03-18 03:43:47.754 -07 000000608 INF: Y Motor: Encoder = 144770 = motor step 113101.6 = 70.6885 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:43:47.754 -07 000000487 INF: Z Motor: Entering MoveAbsStepped (DAC = 37895, sync = True, waitForSettling = False)
17-03-18 03:43:47.754 -07 000000487 INF: Z Motor: Moving to -0.173472 mm, started at -0.166751 mm, distance = -6.72 um
17-03-18 03:43:47.754 -07 000000608 INF: Y Motor: Last commanded position = 70.7026 mm (113124.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 03:43:47.754 -07 000000608 INF: Y Motor: Moving 1351 steps-29
17-03-18 03:43:47.754 -07 000000611 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 116, FrontChillerTemperature: 3.988112,
17-03-18 03:43:47.754 -07 000000611 INF: FPGA: Recv FOCMRRFOC
17-03-18 03:43:47.754 -07 000000382 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 203 ms overall
17-03-18 03:43:47.774 -07 000000608 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 03:43:47.784 -07 000000487 INF: FPGA: Xmit ZDACW 37895\n [Z Motor]
17-03-18 03:43:47.784 -07 000000611 INF: FPGA: Recv ZDACW
17-03-18 03:43:47.794 -07 000000487 INF: FPGA: 'ZDACW 37895' command took 0 ms to send, 0 ms to get response, and 37 ms overall
17-03-18 03:43:47.814 -07 000000487 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:43:47.814 -07 000000611 INF: FPGA: Recv ZDACR 37895
17-03-18 03:43:47.824 -07 000000487 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 03:43:47.824 -07 000000487 INF: Z Motor: MoveAbsStepped took 69 ms (did NOT wait for settling yet))
17-03-18 03:43:48.144 -07 000000611 INF: FPGA: Recv YMVTILE
17-03-18 03:43:48.144 -07 000000608 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 395 ms overall
17-03-18 03:43:48.194 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:43:48.194 -07 000000382 INF: FPGA: Recv YRDPOS 146471
17-03-18 03:43:48.204 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 03:43:48.204 -07 000000608 INF: Y Motor: Encoder = 146471 = motor step 114430.5 = 71.5190 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:43:48.204 -07 000000608 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-18 03:43:48.204 -07 000000608 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 395 ms, distance = 0.844 mm, average velocity = 2.137 mm/sec
17-03-18 03:43:49.154 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:43:49.154 -07 000000487 INF: FPGA: Recv YRDPOS 146471
17-03-18 03:43:49.164 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:43:49.164 -07 000000608 INF: Y Motor: Encoder = 146471 = motor step 114430.5 = 71.5190 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:43:49.184 -07 000000608 INF: Y Motor: After move to 71.532608, error = -0.013565, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 03:43:49.184 -07 000000608 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 03:43:49.184 -07 000000608 INF: Y Motor: Moved to 71.5190 after 1639 ms (table move)
17-03-18 03:43:49.194 -07 000000462 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173472 mm (DAC = 37895)
17-03-18 03:43:49.194 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:49.194 -07 000000611 INF: FPGA: Recv ZSGSRD 36298
17-03-18 03:43:49.204 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 03:43:49.204 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:49.204 -07 000000487 INF: FPGA: Recv ZSGSRD 36293
17-03-18 03:43:49.214 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:49.214 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:49.214 -07 000000382 INF: FPGA: Recv ZSGSRD 36297
17-03-18 03:43:49.224 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:49.224 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:49.224 -07 000000608 INF: FPGA: Recv ZSGSRD 36297
17-03-18 03:43:49.234 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:49.234 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:49.234 -07 000000487 INF: FPGA: Recv ZSGSRD 36297
17-03-18 03:43:49.244 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:49.244 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:49.244 -07 000000608 INF: FPGA: Recv ZSGSRD 36296
17-03-18 03:43:49.254 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:49.254 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:49.254 -07 000000487 INF: FPGA: Recv ZSGSRD 36295
17-03-18 03:43:49.264 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:49.264 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:49.264 -07 000000608 INF: FPGA: Recv ZSGSRD 36291
17-03-18 03:43:49.274 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:49.274 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:49.274 -07 000000487 INF: FPGA: Recv ZSGSRD 36290
17-03-18 03:43:49.284 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:49.284 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:49.284 -07 000000487 INF: FPGA: Recv ZSGSRD 36294
17-03-18 03:43:49.294 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:49.294 -07 000000462 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:43:49.294 -07 000000608 INF: FPGA: Recv ZPIEZORD 32367
17-03-18 03:43:49.304 -07 000000462 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:49.304 -07 000000462 INF: Z Motor: Piezo is near 49.1 V (nominally 0 to 100 V), expect near 57.8 V, since DAC is at 5.782 V. Piezo Error = -8.7 V.
17-03-18 03:43:49.304 -07 000000462 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.5 um, Read 10 ADC samples: Avg = 36295 (-172.6 uncal um), Error = 0.9 uncal um, Median = 36296 (-172.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 36290 (-172.6 uncal um), Max = 36298 (-172.6 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 03:43:49.304 -07 000000462 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36295, posNoise = 3, negNoise = 5
17-03-18 03:43:49.304 -07 000000462 INF: Z Motor: After move to -0.173472, error = -0.000018, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:43:49.304 -07 000000462 INF: Z Motor: Settle wait time = 1441 ms, measure time = 107 ms (allowed 150 ms), total time = 1548 ms
17-03-18 03:43:49.304 -07 000000462 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-18 03:43:49.354 -07 000000462 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1805 ms
17-03-18 03:43:49.354 -07 000000462 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 03:43:49.354 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:43:49.354 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:43:49.354 -07 000000487 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:43:49.354 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:43:49.354 -07 000000611 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 03:43:49.354 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:43:49.364 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 03:43:49.364 -07 000000611 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 03:43:49.364 -07 000000611 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 03:43:49.364 -07 000000611 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 03:43:49.374 -07 000000611 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-18 03:43:49.374 -07 000000611 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 14 ms.
17-03-18 03:43:49.374 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 03:43:49.424 -07 000000569 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 03:43:49.724 -07 000000569 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 03:43:49.724 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 03:43:49.724 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 03:43:49.724 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1077874736, 0x0, 559484976) start.
17-03-18 03:43:49.754 -07 000000608 INF: FPGA: Recv @CAMSNAP 380
17-03-18 03:43:49.764 -07 000000487 INF: FPGA: Recv CAMSNAP
17-03-18 03:43:49.764 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 380 ms to get response, and 384 ms overall
17-03-18 03:43:49.844 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1077874736, 0x0, 559484976) end. Duration was 127 ms.
17-03-18 03:43:49.844 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:43:49.854 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 03:43:49.854 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-18 03:43:49.864 -07 000000382 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 03:43:49.864 -07 000000512 INF: Autofocus start
17-03-18 03:43:49.864 -07 000000512 INF: MeasureProfile start
17-03-18 03:43:49.864 -07 000000611 INF: FPGA: Recv FOCMRRCUR 
17-03-18 03:43:49.874 -07 000000382 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 03:43:49.874 -07 000000382 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 03:43:49.874 -07 000000512 INF: MeasureProfile done
17-03-18 03:43:49.874 -07 000000512 INF: X=144  Z correction [um]=0.6646646
17-03-18 03:43:49.874 -07 000000512 INF: Autofocus finished
17-03-18 03:43:50.074 -07 000000437 INF: FPGA: Recv FOCMRRIMG
17-03-18 03:43:50.074 -07 000000382 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 03:43:50.074 -07 000000610 INF: Suspending Skipping AutoFocus for the next 6 cycles.
17-03-18 03:43:50.074 -07 000000610 INF: ------------ Scan Snapping tile 15 at Y-position 71.51904296875, Z-position -0.173490131696349. ----------
17-03-18 03:43:50.074 -07 000000610 INF: Cycle	116	Tile	15	Exposure Settings		A	410	G	197	T	197	C	410
17-03-18 03:43:50.084 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36553, sync = True, waitForSettling = True)
17-03-18 03:43:50.084 -07 000000610 INF: Z Motor: Moving to -0.167329 mm, started at -0.173490 mm, distance = 6.16 um
17-03-18 03:43:50.084 -07 000000610 INF: FPGA: Xmit ZDACW 36553\n [Z Motor]
17-03-18 03:43:50.084 -07 000000487 INF: FPGA: Recv ZDACW
17-03-18 03:43:50.094 -07 000000610 INF: FPGA: 'ZDACW 36553' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 03:43:50.094 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:43:50.094 -07 000000569 INF: FPGA: Recv ZDACR 36553
17-03-18 03:43:50.104 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:50.104 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 03:43:50.254 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:50.254 -07 000000487 INF: FPGA: Recv ZSGSRD 35335
17-03-18 03:43:50.264 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:43:50.264 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:50.264 -07 000000512 INF: FPGA: Recv ZSGSRD 35342
17-03-18 03:43:50.274 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:50.274 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:50.274 -07 000000608 INF: FPGA: Recv ZSGSRD 35333
17-03-18 03:43:50.284 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:50.284 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:50.284 -07 000000437 INF: FPGA: Recv ZSGSRD 35334
17-03-18 03:43:50.294 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:50.294 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:50.294 -07 000000611 INF: FPGA: Recv ZSGSRD 35346
17-03-18 03:43:50.304 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:50.304 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:50.304 -07 000000569 INF: FPGA: Recv ZSGSRD 35330
17-03-18 03:43:50.314 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:50.314 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:50.314 -07 000000569 INF: FPGA: Recv ZSGSRD 35338
17-03-18 03:43:50.324 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:50.324 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:50.324 -07 000000474 INF: FPGA: Recv ZSGSRD 35337
17-03-18 03:43:50.334 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:50.334 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:50.334 -07 000000569 INF: FPGA: Recv ZSGSRD 35337
17-03-18 03:43:50.344 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:50.344 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:50.344 -07 000000611 INF: FPGA: Recv ZSGSRD 35341
17-03-18 03:43:50.354 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:50.354 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:43:50.354 -07 000000569 INF: FPGA: Recv ZPIEZORD 31097
17-03-18 03:43:50.364 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:50.364 -07 000000610 INF: Z Motor: Piezo is near 46.4 V (nominally 0 to 100 V), expect near 55.8 V, since DAC is at 5.578 V. Piezo Error = -9.3 V.
17-03-18 03:43:50.364 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.3 um, Read 10 ADC samples: Avg = 35337 (-166.5 uncal um), Error = 0.9 uncal um, Median = 35337 (-166.5 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 35330 (-166.4 uncal um), Max = 35346 (-166.5 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 03:43:50.364 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35337, posNoise = 9, negNoise = 7
17-03-18 03:43:50.364 -07 000000610 INF: Z Motor: After move to -0.167329, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:43:50.364 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 03:43:50.364 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:43:50.364 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:43:50.364 -07 000000437 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:43:50.364 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:43:50.364 -07 000000474 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 03:43:50.364 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 03:43:50.364 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 03:43:50.364 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:43:50.364 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 03:43:50.364 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 03:43:50.364 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 03:43:50.364 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 03:43:50.374 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 03:43:50.374 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 03:43:50.374 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 03:43:50.374 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 03:43:50.384 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 03:43:50.384 -07 000000474 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 03:43:50.384 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 03:43:50.384 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 03:43:50.384 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 410 410 197 197 36729 150\n [Camera]
17-03-18 03:43:50.584 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 03:43:50.994 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 602
17-03-18 03:43:50.994 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 602
17-03-18 03:43:50.994 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:43:50.994 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:43:50.994 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) start.
17-03-18 03:43:50.994 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 602
17-03-18 03:43:50.994 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 602
17-03-18 03:43:50.994 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:43:50.994 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:43:50.994 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 03:43:51.184 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36729 795
17-03-18 03:43:51.334 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP turning grn on 945
17-03-18 03:43:51.374 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 380 ms.
17-03-18 03:43:51.374 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-18 03:43:51.374 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:43:51.384 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) end. Duration was 386 ms.
17-03-18 03:43:51.384 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:43:51.384 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-18 03:43:51.384 -07 000000474 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:43:51.384 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:43:51.384 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-18 03:43:51.384 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-18 03:43:51.534 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1143
17-03-18 03:43:51.534 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1143
17-03-18 03:43:51.534 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:43:51.534 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:43:51.534 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-18 03:43:51.534 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1143
17-03-18 03:43:51.534 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1143
17-03-18 03:43:51.534 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:43:51.534 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:43:51.534 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-18 03:43:51.604 -07 000000437 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 03:43:51.604 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 115. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1671, R2=1741, Total=3412. Warn if over 250 bubbles per interval.
17-03-18 03:43:51.724 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP 1335
17-03-18 03:43:51.734 -07 000000608 INF: FPGA: Recv CAMDBLSNAP
17-03-18 03:43:51.734 -07 000000610 INF: FPGA: 'CAMDBLSNAP 410 410 197 197 36729 150' command took 2 ms to send, 1340 ms to get response, and 1347 ms overall
17-03-18 03:43:51.734 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 03:43:51.734 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 16 at Y-position 71.51904296875, Z-Position -0.167335736464542. ------
17-03-18 03:43:51.734 -07 000000437 INF: Y Motor: MoveYZ optimized starting. Moving Y to 72.3626 mm, moving Z to -0.17374 mm
17-03-18 03:43:51.734 -07 000000437 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 03:43:51.734 -07 000000474 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 03:43:51.734 -07 000000608 INF: FPGA: Recv FOCMRRCUR 
17-03-18 03:43:51.744 -07 000000474 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 03:43:51.744 -07 000000474 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 03:43:51.744 -07 000000569 INF: Y Motor: Entering MoveAbsStepped (target = 115780 steps, sync = True, waitForSettling = True)
17-03-18 03:43:51.744 -07 000000569 INF: Y Motor: Moving to 72.3626 mm, started at 71.5190 mm, delta = 0.8436 mm
17-03-18 03:43:51.744 -07 000000611 INF: Z Motor: Entering MoveAbsStepped (DAC = 37953, sync = True, waitForSettling = False)
17-03-18 03:43:51.744 -07 000000611 INF: Z Motor: Moving to -0.173738 mm, started at -0.167336 mm, distance = -6.40 um
17-03-18 03:43:51.754 -07 000000611 INF: FPGA: Xmit ZDACW 37953\n [Z Motor]
17-03-18 03:43:51.754 -07 000000606 INF: FPGA: Recv ZDACW
17-03-18 03:43:51.764 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:43:51.764 -07 000000611 INF: FPGA: 'ZDACW 37953' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-18 03:43:51.764 -07 000000382 INF: FPGA: Recv YRDPOS 146471
17-03-18 03:43:51.774 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-18 03:43:51.774 -07 000000569 INF: Y Motor: Encoder = 146471 = motor step 114430.5 = 71.5190 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:43:51.774 -07 000000611 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:43:51.774 -07 000000569 INF: Y Motor: Last commanded position = 71.5326 mm (114452.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 03:43:51.774 -07 000000569 INF: Y Motor: Moving 1350 steps-28
17-03-18 03:43:51.774 -07 000000012 INF: FPGA: Recv ZDACR 37953
17-03-18 03:43:51.784 -07 000000611 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 03:43:51.784 -07 000000611 INF: Z Motor: MoveAbsStepped took 37 ms (did NOT wait for settling yet))
17-03-18 03:43:51.784 -07 000000569 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 03:43:51.914 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 383 ms.
17-03-18 03:43:51.914 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-18 03:43:51.914 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:43:51.924 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 382 ms.
17-03-18 03:43:51.924 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 383 ms.
17-03-18 03:43:51.924 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:43:51.924 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:43:51.924 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 03:43:51.924 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-18 03:43:51.934 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-18 03:43:51.944 -07 000000012 INF: FPGA: Recv FOCMRRFOC
17-03-18 03:43:51.944 -07 000000474 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 194 ms to get response, and 202 ms overall
17-03-18 03:43:52.154 -07 000000382 INF: FPGA: Recv YMVTILE
17-03-18 03:43:52.154 -07 000000569 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-18 03:43:52.204 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:43:52.204 -07 000000462 INF: FPGA: Recv YRDPOS 148172
17-03-18 03:43:52.214 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 03:43:52.214 -07 000000569 INF: Y Motor: Encoder = 148172 = motor step 115759.4 = 72.3496 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:43:52.214 -07 000000569 INF: Y Motor: Position error before settling (table move) = -27 encoder counts (-0.013 mm)
17-03-18 03:43:52.214 -07 000000569 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.844 mm, average velocity = 2.174 mm/sec
17-03-18 03:43:53.134 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 116, FrontChillerTemperature: 3.969015,
17-03-18 03:43:53.164 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:43:53.164 -07 000000512 INF: FPGA: Recv YRDPOS 148172
17-03-18 03:43:53.174 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:43:53.174 -07 000000569 INF: Y Motor: Encoder = 148172 = motor step 115759.4 = 72.3496 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:43:53.204 -07 000000569 INF: Y Motor: After move to 72.362610, error = -0.013000, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 03:43:53.204 -07 000000569 INF: Y Motor: Position error after settling (table move) = -27 encoder counts (-0.013 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 03:43:53.204 -07 000000569 INF: Y Motor: Moved to 72.3496 after 1459 ms (table move)
17-03-18 03:43:53.204 -07 000000437 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173738 mm (DAC = 37953)
17-03-18 03:43:53.204 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:53.204 -07 000000579 INF: FPGA: Recv ZSGSRD 36334
17-03-18 03:43:53.214 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 03:43:53.214 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:53.214 -07 000000512 INF: FPGA: Recv ZSGSRD 36332
17-03-18 03:43:53.224 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:53.224 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:53.224 -07 000000462 INF: FPGA: Recv ZSGSRD 36333
17-03-18 03:43:53.234 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:53.234 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:53.234 -07 000000579 INF: FPGA: Recv ZSGSRD 36337
17-03-18 03:43:53.244 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:53.244 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:53.244 -07 000000462 INF: FPGA: Recv ZSGSRD 36335
17-03-18 03:43:53.254 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:53.254 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:53.254 -07 000000512 INF: FPGA: Recv ZSGSRD 36336
17-03-18 03:43:53.264 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:53.264 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:53.264 -07 000000462 INF: FPGA: Recv ZSGSRD 36335
17-03-18 03:43:53.274 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:53.274 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:53.274 -07 000000569 INF: FPGA: Recv ZSGSRD 36334
17-03-18 03:43:53.284 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:53.284 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:53.284 -07 000000462 INF: FPGA: Recv ZSGSRD 36335
17-03-18 03:43:53.294 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:53.294 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:53.294 -07 000000512 INF: FPGA: Recv ZSGSRD 36337
17-03-18 03:43:53.304 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:53.304 -07 000000437 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:43:53.304 -07 000000579 INF: FPGA: Recv ZPIEZORD 32428
17-03-18 03:43:53.314 -07 000000437 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:53.314 -07 000000437 INF: Z Motor: Piezo is near 49.3 V (nominally 0 to 100 V), expect near 57.9 V, since DAC is at 5.791 V. Piezo Error = -8.6 V.
17-03-18 03:43:53.314 -07 000000437 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.7 um, Read 10 ADC samples: Avg = 36335 (-172.9 uncal um), Error = 0.9 uncal um, Median = 36335 (-172.9 uncal um), StdDev = 2 (0.0 uncal um), Range = 5 (0.0 uncal um), Min = 36332 (-172.8 uncal um), Max = 36337 (-172.9 uncal um), Pos Noise = 2 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 03:43:53.314 -07 000000437 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36335, posNoise = 2, negNoise = 3
17-03-18 03:43:53.314 -07 000000437 INF: Z Motor: After move to -0.173738, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:43:53.314 -07 000000437 INF: Z Motor: Settle wait time = 1462 ms, measure time = 105 ms (allowed 150 ms), total time = 1567 ms
17-03-18 03:43:53.314 -07 000000437 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 03:43:53.364 -07 000000437 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1624 ms
17-03-18 03:43:53.364 -07 000000437 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 03:43:53.364 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:43:53.364 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:43:53.364 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:43:53.364 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:43:53.364 -07 000000569 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 03:43:53.364 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:43:53.374 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 03:43:53.374 -07 000000569 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 03:43:53.374 -07 000000569 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 03:43:53.374 -07 000000569 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 03:43:53.384 -07 000000569 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-18 03:43:53.384 -07 000000569 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 14 ms.
17-03-18 03:43:53.384 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 03:43:53.434 -07 000000579 INF: FPGA: Recv @CAMSNAP turning led on 43
17-03-18 03:43:53.734 -07 000000462 INF: FPGA: Recv @CAMSNAP img rdy 343
17-03-18 03:43:53.734 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 343
17-03-18 03:43:53.734 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 03:43:53.734 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1096956120, 0x0, 559484976) start.
17-03-18 03:43:53.764 -07 000000512 INF: FPGA: Recv @CAMSNAP 380
17-03-18 03:43:53.774 -07 000000579 INF: FPGA: Recv CAMSNAP
17-03-18 03:43:53.774 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 379 ms to get response, and 384 ms overall
17-03-18 03:43:53.854 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1096956120, 0x0, 559484976) end. Duration was 113 ms.
17-03-18 03:43:53.854 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:43:53.854 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 03:43:53.854 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-18 03:43:53.874 -07 000000437 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 03:43:53.874 -07 000000512 INF: Autofocus start
17-03-18 03:43:53.874 -07 000000512 INF: MeasureProfile start
17-03-18 03:43:53.874 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-18 03:43:53.884 -07 000000437 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 03:43:53.884 -07 000000437 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 03:43:53.884 -07 000000512 INF: MeasureProfile done
17-03-18 03:43:53.884 -07 000000512 INF: X=16  Z correction [um]=0.01042744
17-03-18 03:43:53.884 -07 000000512 INF: Autofocus finished
17-03-18 03:43:54.084 -07 000000512 INF: FPGA: Recv FOCMRRIMG
17-03-18 03:43:54.084 -07 000000437 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 03:43:54.084 -07 000000610 INF: ------------ Scan Snapping tile 16 at Y-position 72.349609375, Z-position -0.173747100182019. ----------
17-03-18 03:43:54.084 -07 000000610 INF: Cycle	116	Tile	16	Exposure Settings		A	410	G	197	T	197	C	410
17-03-18 03:43:54.094 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36467, sync = True, waitForSettling = True)
17-03-18 03:43:54.094 -07 000000610 INF: Z Motor: Moving to -0.166935 mm, started at -0.173747 mm, distance = 6.81 um
17-03-18 03:43:54.094 -07 000000610 INF: FPGA: Xmit ZDACW 36467\n [Z Motor]
17-03-18 03:43:54.094 -07 000000480 INF: FPGA: Recv ZDACW
17-03-18 03:43:54.104 -07 000000610 INF: FPGA: 'ZDACW 36467' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 03:43:54.104 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:43:54.104 -07 000000579 INF: FPGA: Recv ZDACR 36467
17-03-18 03:43:54.114 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:54.114 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 03:43:54.264 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:54.264 -07 000000512 INF: FPGA: Recv ZSGSRD 35275
17-03-18 03:43:54.274 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:54.274 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:54.274 -07 000000569 INF: FPGA: Recv ZSGSRD 35275
17-03-18 03:43:54.284 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:54.284 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:54.284 -07 000000512 INF: FPGA: Recv ZSGSRD 35277
17-03-18 03:43:54.294 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:54.294 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:54.294 -07 000000462 INF: FPGA: Recv ZSGSRD 35279
17-03-18 03:43:54.304 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:54.304 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:54.304 -07 000000579 INF: FPGA: Recv ZSGSRD 35271
17-03-18 03:43:54.314 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:54.314 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:54.314 -07 000000437 INF: FPGA: Recv ZSGSRD 35273
17-03-18 03:43:54.324 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:54.324 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:54.324 -07 000000579 INF: FPGA: Recv ZSGSRD 35281
17-03-18 03:43:54.334 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:54.334 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:54.334 -07 000000437 INF: FPGA: Recv ZSGSRD 35278
17-03-18 03:43:54.344 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:54.344 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:54.344 -07 000000579 INF: FPGA: Recv ZSGSRD 35272
17-03-18 03:43:54.354 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:54.354 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:54.354 -07 000000462 INF: FPGA: Recv ZSGSRD 35278
17-03-18 03:43:54.364 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:54.364 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:43:54.364 -07 000000480 INF: FPGA: Recv ZPIEZORD 31011
17-03-18 03:43:54.374 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:54.374 -07 000000610 INF: Z Motor: Piezo is near 46.2 V (nominally 0 to 100 V), expect near 55.6 V, since DAC is at 5.565 V. Piezo Error = -9.4 V.
17-03-18 03:43:54.374 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.9 um, Read 10 ADC samples: Avg = 35276 (-166.1 uncal um), Error = 0.9 uncal um, Median = 35276 (-166.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35271 (-166.0 uncal um), Max = 35281 (-166.1 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 03:43:54.374 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35276, posNoise = 5, negNoise = 5
17-03-18 03:43:54.374 -07 000000610 INF: Z Motor: After move to -0.166935, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:43:54.374 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 03:43:54.374 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:43:54.374 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:43:54.374 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:43:54.374 -07 000000579 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:43:54.374 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 03:43:54.374 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 03:43:54.374 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 03:43:54.374 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:43:54.374 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 03:43:54.374 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 03:43:54.374 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 03:43:54.374 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 03:43:54.384 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 03:43:54.384 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 03:43:54.384 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 03:43:54.384 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 03:43:54.394 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 03:43:54.394 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 03:43:54.394 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 03:43:54.394 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 03:43:54.394 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 410 410 197 197 36644 150\n [Camera]
17-03-18 03:43:54.594 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 03:43:55.004 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 602
17-03-18 03:43:55.004 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 602
17-03-18 03:43:55.004 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:43:55.004 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:43:55.004 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-18 03:43:55.004 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 602
17-03-18 03:43:55.004 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 602
17-03-18 03:43:55.004 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:43:55.134 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:43:55.134 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) start.
17-03-18 03:43:55.194 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36644 795
17-03-18 03:43:55.344 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP turning grn on 945
17-03-18 03:43:55.384 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 384 ms.
17-03-18 03:43:55.384 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-18 03:43:55.384 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:43:55.394 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:43:55.394 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-18 03:43:55.504 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) end. Duration was 372 ms.
17-03-18 03:43:55.504 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 372 ms.
17-03-18 03:43:55.504 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:43:55.514 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:43:55.514 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 509 ms.
17-03-18 03:43:55.544 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1142
17-03-18 03:43:55.544 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1142
17-03-18 03:43:55.544 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:43:55.544 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1142
17-03-18 03:43:55.544 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1142
17-03-18 03:43:55.544 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:43:55.554 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:43:55.554 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-18 03:43:55.554 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:43:55.554 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2199785120, 0x0, 418435064) start.
17-03-18 03:43:55.734 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP 1334
17-03-18 03:43:55.734 -07 000000569 INF: FPGA: Recv CAMDBLSNAP
17-03-18 03:43:55.734 -07 000000610 INF: FPGA: 'CAMDBLSNAP 410 410 197 197 36644 150' command took 2 ms to send, 1335 ms to get response, and 1342 ms overall
17-03-18 03:43:55.734 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 03:43:55.734 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 17 at Y-position 72.349609375, Z-Position -0.166943859523894. ------
17-03-18 03:43:55.744 -07 000000455 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 03:43:55.744 -07 000000462 INF: Y Motor: MoveYZ optimized starting. Moving Y to 73.1926 mm, moving Z to -0.17344 mm
17-03-18 03:43:55.744 -07 000000462 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 03:43:55.744 -07 000000611 INF: FPGA: Recv FOCMRRCUR 
17-03-18 03:43:55.744 -07 000000437 INF: Y Motor: Entering MoveAbsStepped (target = 117108 steps, sync = True, waitForSettling = True)
17-03-18 03:43:55.744 -07 000000437 INF: Y Motor: Moving to 73.1926 mm, started at 72.3496 mm, delta = 0.8430 mm
17-03-18 03:43:55.744 -07 000000561 INF: Z Motor: Entering MoveAbsStepped (DAC = 37889, sync = True, waitForSettling = False)
17-03-18 03:43:55.744 -07 000000561 INF: Z Motor: Moving to -0.173445 mm, started at -0.166944 mm, distance = -6.50 um
17-03-18 03:43:55.754 -07 000000455 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:55.754 -07 000000437 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:43:55.754 -07 000000581 INF: FPGA: Recv YRDPOS 148172
17-03-18 03:43:55.764 -07 000000561 INF: FPGA: Xmit ZDACW 37889\n [Z Motor]
17-03-18 03:43:55.764 -07 000000437 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-18 03:43:55.764 -07 000000437 INF: Y Motor: Encoder = 148172 = motor step 115759.4 = 72.3496 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:43:55.764 -07 000000437 INF: Y Motor: Last commanded position = 72.3626 mm (115780.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 03:43:55.764 -07 000000437 INF: Y Motor: Moving 1349 steps-27
17-03-18 03:43:55.764 -07 000000569 INF: FPGA: Recv ZDACW
17-03-18 03:43:55.774 -07 000000455 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 03:43:55.774 -07 000000561 INF: FPGA: 'ZDACW 37889' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-18 03:43:55.784 -07 000000437 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 03:43:55.794 -07 000000561 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:43:55.794 -07 000000487 INF: FPGA: Recv ZDACR 37889
17-03-18 03:43:55.804 -07 000000561 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 03:43:55.804 -07 000000561 INF: Z Motor: MoveAbsStepped took 53 ms (did NOT wait for settling yet))
17-03-18 03:43:55.944 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2199785120, 0x0, 418435064) end. Duration was 388 ms.
17-03-18 03:43:55.944 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-18 03:43:55.944 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:43:55.944 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 392 ms.
17-03-18 03:43:55.944 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-18 03:43:55.944 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:43:55.944 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 03:43:55.944 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:43:55.944 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 03:43:55.954 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 406 ms.
17-03-18 03:43:55.974 -07 000000382 INF: FPGA: Recv FOCMRRFOC
17-03-18 03:43:55.974 -07 000000455 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 03:43:56.154 -07 000000561 INF: FPGA: Recv YMVTILE
17-03-18 03:43:56.154 -07 000000437 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 03:43:56.204 -07 000000437 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:43:56.204 -07 000000480 INF: FPGA: Recv YRDPOS 149865
17-03-18 03:43:56.214 -07 000000437 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 03:43:56.214 -07 000000437 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:43:56.214 -07 000000437 INF: Y Motor: Position error before settling (table move) = -33 encoder counts (-0.016 mm)
17-03-18 03:43:56.214 -07 000000437 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.843 mm, average velocity = 2.123 mm/sec
17-03-18 03:43:56.604 -07 000000611 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 03:43:56.604 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 115. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1671, R2=1741, Total=3412. Warn if over 250 bubbles per interval.
17-03-18 03:43:57.164 -07 000000437 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:43:57.164 -07 000000569 INF: FPGA: Recv YRDPOS 149865
17-03-18 03:43:57.174 -07 000000437 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:43:57.174 -07 000000437 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:43:57.204 -07 000000437 INF: Y Motor: After move to 73.192604, error = -0.016335, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 03:43:57.204 -07 000000437 INF: Y Motor: Position error after settling (table move) = -33 encoder counts (-0.016 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 03:43:57.204 -07 000000437 INF: Y Motor: Moved to 73.1763 after 1454 ms (table move)
17-03-18 03:43:57.204 -07 000000462 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173445 mm (DAC = 37889)
17-03-18 03:43:57.204 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:57.204 -07 000000606 INF: FPGA: Recv ZSGSRD 36296
17-03-18 03:43:57.214 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 03:43:57.214 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:57.214 -07 000000437 INF: FPGA: Recv ZSGSRD 36285
17-03-18 03:43:57.224 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:57.224 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:57.224 -07 000000474 INF: FPGA: Recv ZSGSRD 36291
17-03-18 03:43:57.234 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:57.234 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:57.234 -07 000000569 INF: FPGA: Recv ZSGSRD 36289
17-03-18 03:43:57.244 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:57.244 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:57.244 -07 000000606 INF: FPGA: Recv ZSGSRD 36296
17-03-18 03:43:57.254 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:57.254 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:57.254 -07 000000437 INF: FPGA: Recv ZSGSRD 36288
17-03-18 03:43:57.264 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:57.264 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:57.264 -07 000000455 INF: FPGA: Recv ZSGSRD 36285
17-03-18 03:43:57.274 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:57.274 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:57.274 -07 000000455 INF: FPGA: Recv ZSGSRD 36288
17-03-18 03:43:57.284 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:57.284 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:57.284 -07 000000474 INF: FPGA: Recv ZSGSRD 36287
17-03-18 03:43:57.294 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:57.294 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:57.294 -07 000000611 INF: FPGA: Recv ZSGSRD 36287
17-03-18 03:43:57.304 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:57.304 -07 000000462 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:43:57.304 -07 000000487 INF: FPGA: Recv ZPIEZORD 32386
17-03-18 03:43:57.314 -07 000000462 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:57.314 -07 000000462 INF: Z Motor: Piezo is near 49.2 V (nominally 0 to 100 V), expect near 57.8 V, since DAC is at 5.781 V. Piezo Error = -8.6 V.
17-03-18 03:43:57.314 -07 000000462 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.4 um, Read 10 ADC samples: Avg = 36289 (-172.6 uncal um), Error = 0.9 uncal um, Median = 36288 (-172.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 36285 (-172.5 uncal um), Max = 36296 (-172.6 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 03:43:57.314 -07 000000462 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36289, posNoise = 7, negNoise = 4
17-03-18 03:43:57.314 -07 000000462 INF: Z Motor: After move to -0.173445, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:43:57.314 -07 000000462 INF: Z Motor: Settle wait time = 1458 ms, measure time = 105 ms (allowed 150 ms), total time = 1563 ms
17-03-18 03:43:57.314 -07 000000462 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 03:43:57.364 -07 000000462 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1619 ms
17-03-18 03:43:57.364 -07 000000462 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 03:43:57.364 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:43:57.364 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:43:57.364 -07 000000487 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:43:57.364 -07 000000611 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:43:57.374 -07 000000455 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 03:43:57.374 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:43:57.374 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 03:43:57.374 -07 000000455 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 03:43:57.374 -07 000000455 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 03:43:57.374 -07 000000455 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 03:43:57.384 -07 000000455 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 03:43:57.384 -07 000000455 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-18 03:43:57.384 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 03:43:57.434 -07 000000462 INF: FPGA: Recv @CAMSNAP turning led on 46
17-03-18 03:43:57.734 -07 000000455 INF: FPGA: Recv @CAMSNAP img rdy 346
17-03-18 03:43:57.734 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 346
17-03-18 03:43:57.734 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 03:43:57.734 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1077874736, 0x0, 559484976) start.
17-03-18 03:43:57.764 -07 000000455 INF: FPGA: Recv @CAMSNAP 380
17-03-18 03:43:57.764 -07 000000462 INF: FPGA: Recv CAMSNAP
17-03-18 03:43:57.764 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 378 ms to get response, and 384 ms overall
17-03-18 03:43:57.854 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1077874736, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 03:43:57.854 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:43:57.854 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 03:43:57.854 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 03:43:57.864 -07 000000487 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 03:43:57.864 -07 000000467 INF: Autofocus start
17-03-18 03:43:57.864 -07 000000467 INF: MeasureProfile start
17-03-18 03:43:57.864 -07 000000474 INF: FPGA: Recv FOCMRRCUR 
17-03-18 03:43:57.874 -07 000000487 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 03:43:57.874 -07 000000487 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 03:43:57.884 -07 000000467 INF: MeasureProfile done
17-03-18 03:43:57.884 -07 000000467 INF: X=0  Z correction [um]=-0.0713522
17-03-18 03:43:57.884 -07 000000467 INF: Autofocus finished
17-03-18 03:43:58.074 -07 000000467 INF: FPGA: Recv FOCMRRIMG
17-03-18 03:43:58.074 -07 000000487 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 03:43:58.074 -07 000000610 INF: ------------ Scan Snapping tile 17 at Y-position 73.17626953125, Z-position -0.173451586423498. ----------
17-03-18 03:43:58.194 -07 000000610 INF: Cycle	116	Tile	17	Exposure Settings		A	410	G	197	T	197	C	410
17-03-18 03:43:58.194 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36386, sync = True, waitForSettling = True)
17-03-18 03:43:58.194 -07 000000610 INF: Z Motor: Moving to -0.166564 mm, started at -0.173452 mm, distance = 6.89 um
17-03-18 03:43:58.204 -07 000000610 INF: FPGA: Xmit ZDACW 36386\n [Z Motor]
17-03-18 03:43:58.204 -07 000000462 INF: FPGA: Recv ZDACW
17-03-18 03:43:58.214 -07 000000610 INF: FPGA: 'ZDACW 36386' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-18 03:43:58.214 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:43:58.214 -07 000000455 INF: FPGA: Recv ZDACR 36386
17-03-18 03:43:58.224 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:58.224 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 03:43:58.374 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:58.374 -07 000000611 INF: FPGA: Recv ZSGSRD 35223
17-03-18 03:43:58.384 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:58.384 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:58.384 -07 000000462 INF: FPGA: Recv ZSGSRD 35223
17-03-18 03:43:58.394 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:58.394 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:58.394 -07 000000487 INF: FPGA: Recv ZSGSRD 35217
17-03-18 03:43:58.404 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:58.404 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:58.404 -07 000000455 INF: FPGA: Recv ZSGSRD 35220
17-03-18 03:43:58.414 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:58.414 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:58.414 -07 000000467 INF: FPGA: Recv ZSGSRD 35223
17-03-18 03:43:58.424 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:58.424 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:58.424 -07 000000455 INF: FPGA: Recv ZSGSRD 35216
17-03-18 03:43:58.434 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:58.434 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:58.434 -07 000000487 INF: FPGA: Recv ZSGSRD 35215
17-03-18 03:43:58.444 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:58.444 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:58.444 -07 000000455 INF: FPGA: Recv ZSGSRD 35217
17-03-18 03:43:58.454 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:58.454 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:58.454 -07 000000487 INF: FPGA: Recv ZSGSRD 35218
17-03-18 03:43:58.464 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:58.464 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:43:58.464 -07 000000455 INF: FPGA: Recv ZSGSRD 35217
17-03-18 03:43:58.474 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:58.474 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:43:58.474 -07 000000487 INF: FPGA: Recv ZPIEZORD 30947
17-03-18 03:43:58.484 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:58.484 -07 000000610 INF: Z Motor: Piezo is near 46.1 V (nominally 0 to 100 V), expect near 55.5 V, since DAC is at 5.552 V. Piezo Error = -9.4 V.
17-03-18 03:43:58.484 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.6 um, Read 10 ADC samples: Avg = 35219 (-165.7 uncal um), Error = 0.9 uncal um, Median = 35218 (-165.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35215 (-165.7 uncal um), Max = 35223 (-165.7 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 03:43:58.484 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35219, posNoise = 4, negNoise = 4
17-03-18 03:43:58.484 -07 000000610 INF: Z Motor: After move to -0.166564, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:43:58.484 -07 000000610 INF: Z Motor: MoveAbsStepped took 285 ms)
17-03-18 03:43:58.484 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:43:58.484 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:43:58.484 -07 000000455 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:43:58.484 -07 000000487 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 03:43:58.484 -07 000000487 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:43:58.484 -07 000000467 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:43:58.484 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 03:43:58.484 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 03:43:58.484 -07 000000487 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 03:43:58.494 -07 000000487 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 03:43:58.494 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 03:43:58.494 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 03:43:58.494 -07 000000487 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 03:43:58.494 -07 000000487 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 03:43:58.494 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 03:43:58.494 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 03:43:58.504 -07 000000487 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 03:43:58.504 -07 000000487 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 03:43:58.504 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 03:43:58.504 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 03:43:58.514 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 410 410 197 197 36563 150\n [Camera]
17-03-18 03:43:58.514 -07 000000455 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 116, FrontChillerTemperature: 3.98264,
17-03-18 03:43:58.704 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 03:43:59.114 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 602
17-03-18 03:43:59.114 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 602
17-03-18 03:43:59.124 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:43:59.124 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 602
17-03-18 03:43:59.124 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 602
17-03-18 03:43:59.124 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:43:59.124 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-18 03:43:59.124 -07 000000474 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:43:59.134 -07 000000474 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:43:59.134 -07 000000474 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 03:43:59.314 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36563 795
17-03-18 03:43:59.464 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP turning grn on 945
17-03-18 03:43:59.524 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 394 ms.
17-03-18 03:43:59.524 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 03:43:59.524 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:43:59.524 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:43:59.524 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 03:43:59.524 -07 000000474 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 395 ms.
17-03-18 03:43:59.524 -07 000000474 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 03:43:59.524 -07 000000474 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:43:59.534 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:43:59.534 -07 000000474 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-18 03:43:59.664 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1142
17-03-18 03:43:59.664 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1142
17-03-18 03:43:59.664 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:43:59.664 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1142
17-03-18 03:43:59.664 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1142
17-03-18 03:43:59.664 -07 000000479 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:43:59.664 -07 000000479 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:43:59.664 -07 000000479 INF: Camera: sBCa_ReadImage(785074704, 1092550816, 0x0, 418435064) start.
17-03-18 03:43:59.664 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:43:59.664 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 2199785120, 0x0, 391868352) start.
17-03-18 03:43:59.854 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP 1334
17-03-18 03:43:59.854 -07 000000611 INF: FPGA: Recv CAMDBLSNAP
17-03-18 03:43:59.854 -07 000000610 INF: FPGA: 'CAMDBLSNAP 410 410 197 197 36563 150' command took 2 ms to send, 1331 ms to get response, and 1345 ms overall
17-03-18 03:43:59.854 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 03:43:59.854 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 18 at Y-position 73.17626953125, Z-Position -0.166577679431814. ------
17-03-18 03:43:59.854 -07 000000455 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 03:43:59.854 -07 000000487 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.0226 mm, moving Z to -0.17300 mm
17-03-18 03:43:59.854 -07 000000487 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 03:43:59.854 -07 000000437 INF: FPGA: Recv FOCMRRCUR 
17-03-18 03:43:59.864 -07 000000455 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 03:43:59.864 -07 000000455 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 03:43:59.864 -07 000000581 INF: Z Motor: Entering MoveAbsStepped (DAC = 37793, sync = True, waitForSettling = False)
17-03-18 03:43:59.864 -07 000000581 INF: Z Motor: Moving to -0.173005 mm, started at -0.166578 mm, distance = -6.43 um
17-03-18 03:43:59.864 -07 000000608 INF: Y Motor: Entering MoveAbsStepped (target = 118436 steps, sync = True, waitForSettling = True)
17-03-18 03:43:59.864 -07 000000608 INF: Y Motor: Moving to 74.0226 mm, started at 73.1763 mm, delta = 0.8463 mm
17-03-18 03:43:59.874 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:43:59.874 -07 000000606 INF: FPGA: Recv YRDPOS 149865
17-03-18 03:43:59.884 -07 000000581 INF: FPGA: Xmit ZDACW 37793\n [Z Motor]
17-03-18 03:43:59.884 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-18 03:43:59.884 -07 000000608 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:43:59.884 -07 000000608 INF: Y Motor: Last commanded position = 73.1926 mm (117108.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 03:43:59.884 -07 000000608 INF: Y Motor: Moving 1354 steps-33
17-03-18 03:43:59.884 -07 000000625 INF: FPGA: Recv ZDACW
17-03-18 03:43:59.894 -07 000000581 INF: FPGA: 'ZDACW 37793' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-18 03:43:59.894 -07 000000581 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:43:59.894 -07 000000437 INF: FPGA: Recv ZDACR 37793
17-03-18 03:43:59.904 -07 000000608 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 03:43:59.904 -07 000000581 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:43:59.904 -07 000000581 INF: Z Motor: MoveAbsStepped took 39 ms (did NOT wait for settling yet))
17-03-18 03:44:00.054 -07 000000479 INF: Camera: sBCa_ReadImage(785074704, 1092550816, 0x0, 418435064) end. Duration was 387 ms.
17-03-18 03:44:00.054 -07 000000479 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-18 03:44:00.054 -07 000000479 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:44:00.054 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 2199785120, 0x0, 391868352) end. Duration was 388 ms.
17-03-18 03:44:00.054 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-18 03:44:00.054 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:44:00.054 -07 000000479 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:44:00.054 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:44:00.054 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 03:44:00.064 -07 000000579 INF: FPGA: Recv FOCMRRFOC
17-03-18 03:44:00.064 -07 000000455 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 03:44:00.064 -07 000000479 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 03:44:00.274 -07 000000625 INF: FPGA: Recv YMVTILE
17-03-18 03:44:00.274 -07 000000608 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 03:44:00.314 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:44:00.314 -07 000000455 INF: FPGA: Recv YRDPOS 151569
17-03-18 03:44:00.324 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 03:44:00.324 -07 000000608 INF: Y Motor: Encoder = 151569 = motor step 118413.3 = 74.0083 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:44:00.324 -07 000000608 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-18 03:44:00.324 -07 000000608 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.846 mm, average velocity = 2.132 mm/sec
17-03-18 03:44:01.274 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:44:01.274 -07 000000382 INF: FPGA: Recv YRDPOS 151569
17-03-18 03:44:01.284 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:44:01.284 -07 000000608 INF: Y Motor: Encoder = 151569 = motor step 118413.3 = 74.0083 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:44:01.304 -07 000000608 INF: Y Motor: After move to 74.022606, error = -0.014305, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 03:44:01.304 -07 000000608 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 03:44:01.304 -07 000000608 INF: Y Motor: Moved to 74.0083 after 1440 ms (table move)
17-03-18 03:44:01.304 -07 000000487 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173005 mm (DAC = 37793)
17-03-18 03:44:01.304 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:44:01.304 -07 000000480 INF: FPGA: Recv ZSGSRD 36223
17-03-18 03:44:01.314 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 03:44:01.314 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:44:01.314 -07 000000480 INF: FPGA: Recv ZSGSRD 36220
17-03-18 03:44:01.324 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:44:01.324 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:44:01.324 -07 000000462 INF: FPGA: Recv ZSGSRD 36224
17-03-18 03:44:01.334 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:44:01.334 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:44:01.334 -07 000000437 INF: FPGA: Recv ZSGSRD 36217
17-03-18 03:44:01.344 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:44:01.344 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:44:01.344 -07 000000625 INF: FPGA: Recv ZSGSRD 36225
17-03-18 03:44:01.354 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:44:01.354 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:44:01.354 -07 000000480 INF: FPGA: Recv ZSGSRD 36223
17-03-18 03:44:01.364 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:44:01.364 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:44:01.364 -07 000000462 INF: FPGA: Recv ZSGSRD 36231
17-03-18 03:44:01.374 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:44:01.374 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:44:01.374 -07 000000608 INF: FPGA: Recv ZSGSRD 36213
17-03-18 03:44:01.384 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:44:01.384 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:44:01.384 -07 000000579 INF: FPGA: Recv ZSGSRD 36208
17-03-18 03:44:01.394 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:44:01.394 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:44:01.394 -07 000000012 INF: FPGA: Recv ZSGSRD 36214
17-03-18 03:44:01.404 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:44:01.404 -07 000000487 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:44:01.404 -07 000000625 INF: FPGA: Recv ZPIEZORD 32221
17-03-18 03:44:01.414 -07 000000487 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:44:01.414 -07 000000487 INF: Z Motor: Piezo is near 48.8 V (nominally 0 to 100 V), expect near 57.7 V, since DAC is at 5.767 V. Piezo Error = -8.8 V.
17-03-18 03:44:01.414 -07 000000487 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.0 um, Read 10 ADC samples: Avg = 36220 (-172.1 uncal um), Error = 0.9 uncal um, Median = 36222 (-172.1 uncal um), StdDev = 7 (0.0 uncal um), Range = 23 (0.1 uncal um), Min = 36208 (-172.0 uncal um), Max = 36231 (-172.2 uncal um), Pos Noise = 11 (0.1 uncal um), Neg Noise = 12 (0.1 uncal um)
17-03-18 03:44:01.414 -07 000000487 INF: Z Motor: ADC noise = 12, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36220, posNoise = 11, negNoise = 12
17-03-18 03:44:01.414 -07 000000487 INF: Z Motor: After move to -0.173005, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:44:01.414 -07 000000487 INF: Z Motor: Settle wait time = 1443 ms, measure time = 106 ms (allowed 150 ms), total time = 1549 ms
17-03-18 03:44:01.414 -07 000000487 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-18 03:44:01.464 -07 000000487 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1603 ms
17-03-18 03:44:01.464 -07 000000487 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 03:44:01.464 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:44:01.464 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:44:01.464 -07 000000480 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:44:01.464 -07 000000012 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:44:01.464 -07 000000467 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 03:44:01.464 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:44:01.464 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 03:44:01.464 -07 000000467 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 03:44:01.474 -07 000000467 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 03:44:01.474 -07 000000467 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 03:44:01.484 -07 000000467 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-18 03:44:01.484 -07 000000467 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-18 03:44:01.484 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 03:44:01.534 -07 000000480 INF: FPGA: Recv @CAMSNAP turning led on 46
17-03-18 03:44:01.604 -07 000000479 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 03:44:01.604 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 115. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1671, R2=1741, Total=3412. Warn if over 250 bubbles per interval.
17-03-18 03:44:01.834 -07 000000512 INF: FPGA: Recv @CAMSNAP img rdy 346
17-03-18 03:44:01.834 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 346
17-03-18 03:44:01.834 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 03:44:01.944 -07 000000474 INF: FPGA: Recv @CAMSNAP 380
17-03-18 03:44:01.944 -07 000000474 INF: FPGA: Recv CAMSNAP
17-03-18 03:44:01.944 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 458 ms to get response, and 464 ms overall
17-03-18 03:44:01.944 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1077874736, 0x0, 559484976) start.
17-03-18 03:44:02.064 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1077874736, 0x0, 559484976) end. Duration was 117 ms.
17-03-18 03:44:02.064 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:44:02.064 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 03:44:02.064 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 232 ms.
17-03-18 03:44:02.144 -07 000000382 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 03:44:02.144 -07 000000569 INF: Autofocus start
17-03-18 03:44:02.144 -07 000000569 INF: MeasureProfile start
17-03-18 03:44:02.144 -07 000000462 INF: FPGA: Recv FOCMRRCUR 
17-03-18 03:44:02.154 -07 000000382 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 03:44:02.154 -07 000000382 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 03:44:02.154 -07 000000569 INF: MeasureProfile done
17-03-18 03:44:02.154 -07 000000569 INF: X=-112  Z correction [um]=-0.6579942
17-03-18 03:44:02.154 -07 000000569 INF: Autofocus finished
17-03-18 03:44:02.354 -07 000000437 INF: FPGA: Recv FOCMRRIMG
17-03-18 03:44:02.354 -07 000000382 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 204 ms overall
17-03-18 03:44:02.354 -07 000000610 INF: ------------ Scan Snapping tile 18 at Y-position 74.00830078125, Z-position -0.173008315785717. ----------
17-03-18 03:44:02.354 -07 000000610 INF: Cycle	116	Tile	18	Exposure Settings		A	410	G	197	T	197	C	410
17-03-18 03:44:02.364 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36161, sync = True, waitForSettling = True)
17-03-18 03:44:02.364 -07 000000610 INF: Z Motor: Moving to -0.165534 mm, started at -0.173008 mm, distance = 7.47 um
17-03-18 03:44:02.364 -07 000000610 INF: FPGA: Xmit ZDACW 36161\n [Z Motor]
17-03-18 03:44:02.364 -07 000000512 INF: FPGA: Recv ZDACW
17-03-18 03:44:02.374 -07 000000610 INF: FPGA: 'ZDACW 36161' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 03:44:02.374 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:44:02.374 -07 000000382 INF: FPGA: Recv ZDACR 36161
17-03-18 03:44:02.384 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:44:02.384 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 03:44:02.534 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:44:02.534 -07 000000608 INF: FPGA: Recv ZSGSRD 35053
17-03-18 03:44:02.544 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:44:02.544 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:44:02.544 -07 000000474 INF: FPGA: Recv ZSGSRD 35060
17-03-18 03:44:02.554 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:44:02.554 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:44:02.554 -07 000000437 INF: FPGA: Recv ZSGSRD 35060
17-03-18 03:44:02.564 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:44:02.564 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:44:02.564 -07 000000512 INF: FPGA: Recv ZSGSRD 35059
17-03-18 03:44:02.574 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:44:02.574 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:44:02.574 -07 000000487 INF: FPGA: Recv ZSGSRD 35059
17-03-18 03:44:02.584 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:44:02.584 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:44:02.584 -07 000000608 INF: FPGA: Recv ZSGSRD 35063
17-03-18 03:44:02.594 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:44:02.594 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:44:02.594 -07 000000474 INF: FPGA: Recv ZSGSRD 35054
17-03-18 03:44:02.604 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:44:02.604 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:44:02.604 -07 000000437 INF: FPGA: Recv ZSGSRD 35063
17-03-18 03:44:02.614 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:44:02.614 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:44:02.614 -07 000000512 INF: FPGA: Recv ZSGSRD 35066
17-03-18 03:44:02.624 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:44:02.624 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:44:02.624 -07 000000467 INF: FPGA: Recv ZSGSRD 35056
17-03-18 03:44:02.634 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:44:02.634 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:44:02.634 -07 000000462 INF: FPGA: Recv ZPIEZORD 30719
17-03-18 03:44:02.644 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:44:02.644 -07 000000610 INF: Z Motor: Piezo is near 45.6 V (nominally 0 to 100 V), expect near 55.2 V, since DAC is at 5.518 V. Piezo Error = -9.6 V.
17-03-18 03:44:02.644 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -165.5 um, Read 10 ADC samples: Avg = 35059 (-164.7 uncal um), Error = 0.8 uncal um, Median = 35060 (-164.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 35053 (-164.6 uncal um), Max = 35066 (-164.7 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 03:44:02.644 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35059, posNoise = 7, negNoise = 6
17-03-18 03:44:02.644 -07 000000610 INF: Z Motor: After move to -0.165534, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:44:02.644 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 03:44:02.644 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:44:02.644 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:44:02.644 -07 000000012 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:44:02.644 -07 000000467 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:44:02.644 -07 000000474 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 03:44:02.644 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 03:44:02.644 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 03:44:02.644 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:44:02.644 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 03:44:02.644 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 03:44:02.644 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 03:44:02.644 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 03:44:02.654 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 03:44:02.654 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 03:44:02.654 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-18 03:44:02.654 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 03:44:02.664 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 03:44:02.664 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 03:44:02.664 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 03:44:02.664 -07 000000474 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 03:44:02.664 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 410 410 197 197 36338 150\n [Camera]
17-03-18 03:44:02.864 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 03:44:03.274 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 602
17-03-18 03:44:03.274 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 602
17-03-18 03:44:03.274 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:44:03.274 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 602
17-03-18 03:44:03.274 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 602
17-03-18 03:44:03.274 -07 000000474 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:44:03.274 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:44:03.274 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-18 03:44:03.284 -07 000000474 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:44:03.284 -07 000000474 INF: Camera: sBCa_ReadImage(785074704, 2199785120, 0x0, 418435064) start.
17-03-18 03:44:03.464 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36338 795
17-03-18 03:44:03.614 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning grn on 945
17-03-18 03:44:03.654 -07 000000474 INF: Camera: sBCa_ReadImage(785074704, 2199785120, 0x0, 418435064) end. Duration was 370 ms.
17-03-18 03:44:03.654 -07 000000474 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 370 ms.
17-03-18 03:44:03.654 -07 000000474 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:44:03.654 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 377 ms.
17-03-18 03:44:03.654 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:44:03.654 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-18 03:44:03.654 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:44:03.664 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:44:03.664 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-18 03:44:03.664 -07 000000474 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-18 03:44:03.814 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1142
17-03-18 03:44:03.814 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1142
17-03-18 03:44:03.814 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:44:03.814 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:44:03.814 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 1088145512, 0x0, 391868352) start.
17-03-18 03:44:03.814 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1142
17-03-18 03:44:03.814 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1142
17-03-18 03:44:03.814 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:44:03.814 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:44:03.814 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1123567776, 0x0, 418435064) start.
17-03-18 03:44:03.884 -07 000000012 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 116, FrontChillerTemperature: 3.993549,
17-03-18 03:44:04.004 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP 1334
17-03-18 03:44:04.004 -07 000000480 INF: FPGA: Recv CAMDBLSNAP
17-03-18 03:44:04.004 -07 000000610 INF: FPGA: 'CAMDBLSNAP 410 410 197 197 36338 150' command took 2 ms to send, 1334 ms to get response, and 1341 ms overall
17-03-18 03:44:04.004 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 03:44:04.004 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 19 at Y-position 74.00830078125, Z-Position -0.165549805489132. ------
17-03-18 03:44:04.014 -07 000000474 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.8526 mm, moving Z to -0.17138 mm
17-03-18 03:44:04.014 -07 000000474 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 03:44:04.014 -07 000000012 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 03:44:04.014 -07 000000467 INF: Z Motor: Entering MoveAbsStepped (DAC = 37438, sync = True, waitForSettling = False)
17-03-18 03:44:04.014 -07 000000467 INF: Z Motor: Moving to -0.171380 mm, started at -0.165550 mm, distance = -5.83 um
17-03-18 03:44:04.014 -07 000000480 INF: Y Motor: Entering MoveAbsStepped (target = 119764 steps, sync = True, waitForSettling = True)
17-03-18 03:44:04.014 -07 000000480 INF: Y Motor: Moving to 74.8526 mm, started at 74.0083 mm, delta = 0.8443 mm
17-03-18 03:44:04.024 -07 000000467 INF: FPGA: Xmit ZDACW 37438\n [Z Motor]
17-03-18 03:44:04.034 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:44:04.214 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 1088145512, 0x0, 391868352) end. Duration was 402 ms.
17-03-18 03:44:04.214 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 03:44:04.214 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:44:04.214 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1123567776, 0x0, 418435064) end. Duration was 402 ms.
17-03-18 03:44:04.214 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-18 03:44:04.214 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:44:04.224 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 03:44:04.224 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms.
17-03-18 03:44:04.224 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 03:44:04.234 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-18 03:44:04.234 -07 000000462 INF: FPGA: Recv FOCMRRCUR 
17-03-18 03:44:04.234 -07 000000462 INF: FPGA: Recv ZDACW
17-03-18 03:44:04.234 -07 000000462 INF: FPGA: Recv YRDPOS 151569
17-03-18 03:44:04.234 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 193 ms to get response, and 218 ms overall
17-03-18 03:44:04.234 -07 000000480 INF: Y Motor: Encoder = 151569 = motor step 118413.3 = 74.0083 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:44:04.234 -07 000000480 INF: Y Motor: Last commanded position = 74.0226 mm (118436.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 03:44:04.234 -07 000000480 INF: Y Motor: Moving 1351 steps-29
17-03-18 03:44:04.234 -07 000000480 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 03:44:04.234 -07 000000012 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 213 ms to get response, and 221 ms overall
17-03-18 03:44:04.234 -07 000000467 INF: FPGA: 'ZDACW 37438' command took 0 ms to send, 203 ms to get response, and 218 ms overall
17-03-18 03:44:04.244 -07 000000467 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:44:04.244 -07 000000512 INF: FPGA: Recv ZDACR 37438
17-03-18 03:44:04.254 -07 000000012 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 03:44:04.254 -07 000000467 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-18 03:44:04.254 -07 000000467 INF: Z Motor: MoveAbsStepped took 235 ms (did NOT wait for settling yet))
17-03-18 03:44:04.454 -07 000000625 INF: FPGA: Recv FOCMRRFOC
17-03-18 03:44:04.454 -07 000000012 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 217 ms overall
17-03-18 03:44:04.614 -07 000000569 INF: FPGA: Recv YMVTILE
17-03-18 03:44:04.614 -07 000000480 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 372 ms to get response, and 378 ms overall
17-03-18 03:44:04.644 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:44:04.644 -07 000000625 INF: FPGA: Recv YRDPOS 153256
17-03-18 03:44:04.654 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 03:44:04.654 -07 000000480 INF: Y Motor: Encoder = 153256 = motor step 119731.3 = 74.8320 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:44:04.654 -07 000000480 INF: Y Motor: Position error before settling (table move) = -42 encoder counts (-0.021 mm)
17-03-18 03:44:04.654 -07 000000480 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 378 ms, distance = 0.844 mm, average velocity = 2.234 mm/sec
17-03-18 03:44:05.604 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:44:05.604 -07 000000012 INF: FPGA: Recv YRDPOS 153256
17-03-18 03:44:05.614 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:44:05.614 -07 000000480 INF: Y Motor: Encoder = 153256 = motor step 119731.3 = 74.8320 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:44:05.624 -07 000000480 INF: Y Motor: After move to 74.852608, error = -0.020576, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 03:44:05.624 -07 000000480 INF: Y Motor: Position error after settling (table move) = -42 encoder counts (-0.021 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 03:44:05.624 -07 000000480 INF: Y Motor: Moved to 74.8320 after 1614 ms (table move)
17-03-18 03:44:05.634 -07 000000474 INF: Z Motor: EndOfMoveAbsStepped: target = -0.171380 mm (DAC = 37438)
17-03-18 03:44:05.634 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:44:05.634 -07 000000569 INF: FPGA: Recv ZSGSRD 35970
17-03-18 03:44:05.644 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 03:44:05.644 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:44:05.644 -07 000000569 INF: FPGA: Recv ZSGSRD 35963
17-03-18 03:44:05.654 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:44:05.654 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:44:05.654 -07 000000569 INF: FPGA: Recv ZSGSRD 35965
17-03-18 03:44:05.664 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:44:05.664 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:44:05.664 -07 000000625 INF: FPGA: Recv ZSGSRD 35959
17-03-18 03:44:05.674 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:44:05.674 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:44:05.674 -07 000000512 INF: FPGA: Recv ZSGSRD 35968
17-03-18 03:44:05.684 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:44:05.694 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:44:05.694 -07 000000012 INF: FPGA: Recv ZSGSRD 35971
17-03-18 03:44:05.704 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 03:44:05.704 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:44:05.704 -07 000000012 INF: FPGA: Recv ZSGSRD 35971
17-03-18 03:44:05.714 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:44:05.714 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:44:05.714 -07 000000012 INF: FPGA: Recv ZSGSRD 35969
17-03-18 03:44:05.724 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:44:05.724 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:44:05.724 -07 000000012 INF: FPGA: Recv ZSGSRD 35965
17-03-18 03:44:05.734 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:44:05.734 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:44:05.734 -07 000000012 INF: FPGA: Recv ZSGSRD 35972
17-03-18 03:44:05.744 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:44:05.744 -07 000000474 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:44:05.744 -07 000000012 INF: FPGA: Recv ZPIEZORD 31980
17-03-18 03:44:05.754 -07 000000474 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:44:05.754 -07 000000474 INF: Z Motor: Piezo is near 48.3 V (nominally 0 to 100 V), expect near 57.1 V, since DAC is at 5.713 V. Piezo Error = -8.8 V.
17-03-18 03:44:05.754 -07 000000474 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.4 um, Read 10 ADC samples: Avg = 35967 (-170.5 uncal um), Error = 0.9 uncal um, Median = 35968 (-170.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 35959 (-170.5 uncal um), Max = 35972 (-170.5 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 03:44:05.754 -07 000000474 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35967, posNoise = 5, negNoise = 8
17-03-18 03:44:05.754 -07 000000474 INF: Z Motor: After move to -0.171380, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:44:05.754 -07 000000474 INF: Z Motor: Settle wait time = 1619 ms, measure time = 116 ms (allowed 150 ms), total time = 1735 ms
17-03-18 03:44:05.754 -07 000000474 INF: Z Motor: Waiting extra 34 ms after reading position to reach expected total of 150 ms
17-03-18 03:44:05.794 -07 000000474 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1777 ms
17-03-18 03:44:05.794 -07 000000474 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 03:44:05.794 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:44:05.794 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:44:05.794 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:44:05.794 -07 000000467 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:44:05.794 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 03:44:05.794 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:44:05.794 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 03:44:05.794 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 03:44:05.804 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 03:44:05.804 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 03:44:05.804 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 03:44:05.804 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 03:44:05.814 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 03:44:05.854 -07 000000512 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 03:44:06.154 -07 000000625 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 03:44:06.154 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 03:44:06.154 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 03:44:06.154 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 661079536, 0x0, 559484976) start.
17-03-18 03:44:06.194 -07 000000012 INF: FPGA: Recv @CAMSNAP 380
17-03-18 03:44:06.194 -07 000000569 INF: FPGA: Recv CAMSNAP
17-03-18 03:44:06.194 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 03:44:06.274 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 661079536, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 03:44:06.274 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:44:06.274 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 03:44:06.274 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 116 ms.
17-03-18 03:44:06.294 -07 000000625 INF: Autofocus start
17-03-18 03:44:06.294 -07 000000625 INF: MeasureProfile start
17-03-18 03:44:06.294 -07 000000012 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 03:44:06.294 -07 000000561 INF: FPGA: Recv FOCMRRCUR 
17-03-18 03:44:06.304 -07 000000012 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 03:44:06.304 -07 000000012 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 03:44:06.304 -07 000000625 INF: MeasureProfile done
17-03-18 03:44:06.304 -07 000000625 INF: X=128  Z correction [um]=0.5828849
17-03-18 03:44:06.304 -07 000000625 INF: Autofocus finished
17-03-18 03:44:06.504 -07 000000480 INF: FPGA: Recv FOCMRRIMG
17-03-18 03:44:06.504 -07 000000012 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 03:44:06.504 -07 000000610 INF: ------------ Scan Snapping tile 19 at Y-position 74.83203125, Z-position -0.171382990113851. ----------
17-03-18 03:44:06.514 -07 000000610 INF: Cycle	116	Tile	19	Exposure Settings		A	410	G	197	T	197	C	410
17-03-18 03:44:06.514 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36078, sync = True, waitForSettling = True)
17-03-18 03:44:06.514 -07 000000610 INF: Z Motor: Moving to -0.165154 mm, started at -0.171383 mm, distance = 6.23 um
17-03-18 03:44:06.514 -07 000000610 INF: FPGA: Xmit ZDACW 36078\n [Z Motor]
17-03-18 03:44:06.514 -07 000000012 INF: FPGA: Recv ZDACW
17-03-18 03:44:06.524 -07 000000610 INF: FPGA: 'ZDACW 36078' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 03:44:06.524 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:44:06.524 -07 000000467 INF: FPGA: Recv ZDACR 36078
17-03-18 03:44:06.534 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:44:06.534 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 03:44:06.604 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 03:44:06.604 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 115. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1671, R2=1741, Total=3412. Warn if over 250 bubbles per interval.
17-03-18 03:44:06.684 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:44:06.684 -07 000000625 INF: FPGA: Recv ZSGSRD 34998
17-03-18 03:44:06.694 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:44:06.694 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:44:06.694 -07 000000462 INF: FPGA: Recv ZSGSRD 35006
17-03-18 03:44:06.704 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:44:06.704 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:44:06.704 -07 000000625 INF: FPGA: Recv ZSGSRD 35002
17-03-18 03:44:06.714 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:44:06.714 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:44:06.714 -07 000000467 INF: FPGA: Recv ZSGSRD 34997
17-03-18 03:44:06.724 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:44:06.724 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:44:06.724 -07 000000462 INF: FPGA: Recv ZSGSRD 34998
17-03-18 03:44:06.734 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:44:06.734 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:44:06.734 -07 000000462 INF: FPGA: Recv ZSGSRD 35005
17-03-18 03:44:06.744 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:44:06.744 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:44:06.744 -07 000000012 INF: FPGA: Recv ZSGSRD 35000
17-03-18 03:44:06.754 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:44:06.754 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:44:06.754 -07 000000625 INF: FPGA: Recv ZSGSRD 34999
17-03-18 03:44:06.764 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:44:06.764 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:44:06.764 -07 000000581 INF: FPGA: Recv ZSGSRD 34994
17-03-18 03:44:06.774 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:44:06.774 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:44:06.774 -07 000000462 INF: FPGA: Recv ZSGSRD 35001
17-03-18 03:44:06.784 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:44:06.784 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:44:06.784 -07 000000012 INF: FPGA: Recv ZPIEZORD 30681
17-03-18 03:44:06.794 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:44:06.794 -07 000000610 INF: Z Motor: Piezo is near 45.5 V (nominally 0 to 100 V), expect near 55.1 V, since DAC is at 5.505 V. Piezo Error = -9.5 V.
17-03-18 03:44:06.794 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -165.2 um, Read 10 ADC samples: Avg = 35000 (-164.3 uncal um), Error = 0.8 uncal um, Median = 35000 (-164.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 34994 (-164.3 uncal um), Max = 35006 (-164.3 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 03:44:06.794 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35000, posNoise = 6, negNoise = 6
17-03-18 03:44:06.794 -07 000000610 INF: Z Motor: After move to -0.165154, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:44:06.794 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 03:44:06.794 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:44:06.794 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:44:06.794 -07 000000480 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:44:06.794 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:44:06.794 -07 000000012 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 03:44:06.794 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:44:06.794 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 03:44:06.794 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 03:44:06.794 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 03:44:06.794 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 03:44:06.794 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 03:44:06.794 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 03:44:06.804 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 03:44:06.804 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 03:44:06.804 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 03:44:06.804 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 03:44:06.814 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 03:44:06.814 -07 000000012 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 03:44:06.814 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-18 03:44:06.814 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 03:44:06.814 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 410 410 197 197 36254 150\n [Camera]
17-03-18 03:44:07.014 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 03:44:07.424 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 602
17-03-18 03:44:07.424 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 602
17-03-18 03:44:07.424 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:44:07.424 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:44:07.424 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 1158990040, 0x0, 391868352) start.
17-03-18 03:44:07.424 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 602
17-03-18 03:44:07.424 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 602
17-03-18 03:44:07.424 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:44:07.424 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:44:07.424 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 03:44:07.614 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36254 795
17-03-18 03:44:07.764 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning grn on 945
17-03-18 03:44:07.824 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 1158990040, 0x0, 391868352) end. Duration was 399 ms.
17-03-18 03:44:07.824 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 03:44:07.824 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:44:07.824 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 399 ms.
17-03-18 03:44:07.824 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 03:44:07.824 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:44:07.824 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:44:07.824 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 03:44:07.834 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:44:07.834 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-18 03:44:07.964 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1142
17-03-18 03:44:07.964 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1142
17-03-18 03:44:07.964 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:44:08.084 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1142
17-03-18 03:44:08.084 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1142
17-03-18 03:44:08.084 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:44:08.084 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:44:08.084 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:44:08.084 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2199785120, 0x0, 418435064) start.
17-03-18 03:44:08.084 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-18 03:44:08.154 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP 1335
17-03-18 03:44:08.154 -07 000000474 INF: FPGA: Recv CAMDBLSNAP
17-03-18 03:44:08.154 -07 000000610 INF: FPGA: 'CAMDBLSNAP 410 410 197 197 36254 150' command took 2 ms to send, 1336 ms to get response, and 1342 ms overall
17-03-18 03:44:08.494 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2199785120, 0x0, 418435064) end. Duration was 401 ms.
17-03-18 03:44:08.494 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 401 ms.
17-03-18 03:44:08.494 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 03:44:08.494 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:44:08.494 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 03:44:08.494 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:44:08.494 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 03:44:08.494 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 530 ms.
17-03-18 03:44:08.494 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) start.
17-03-18 03:44:08.494 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 03:44:08.504 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 420 ms.
17-03-18 03:44:08.534 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) end. Duration was 42 ms.
17-03-18 03:44:08.534 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) start.
17-03-18 03:44:08.584 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) end. Duration was 42 ms.
17-03-18 03:44:08.584 -07 000000610 INF: Move compensator for Bottom-surface imaging.
17-03-18 03:44:08.584 -07 000000610 INF: FPGA: Xmit EMCUR 80\n [Compensator]
17-03-18 03:44:08.584 -07 000000512 INF: FPGA: Recv EMCUR 
17-03-18 03:44:08.594 -07 000000610 INF: FPGA: 'EMCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 03:44:08.594 -07 000000610 INF: FPGA: Xmit EMIN 20 40\n [Compensator]
17-03-18 03:44:09.094 -07 000000561 INF: FPGA: Recv EMIN
17-03-18 03:44:09.094 -07 000000610 INF: FPGA: 'EMIN 20 40' command took 0 ms to send, 493 ms to get response, and 502 ms overall
17-03-18 03:44:09.094 -07 000000610 INF: FPGA: Xmit EMCUR 60\n [Compensator]
17-03-18 03:44:09.094 -07 000000474 INF: FPGA: Recv EMCUR 
17-03-18 03:44:09.104 -07 000000610 INF: FPGA: 'EMCUR 60' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 03:44:09.104 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 03:44:09.104 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 1 at Y-position 74.83203125, Z-Position -0.165170776972768. ------
17-03-18 03:44:09.104 -07 000000561 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 03:44:09.104 -07 000000512 INF: Y Motor: MoveYZ optimized starting. Moving Y to 59.9126 mm, moving Z to -0.13951 mm
17-03-18 03:44:09.104 -07 000000512 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 03:44:09.114 -07 000000474 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True)
17-03-18 03:44:09.114 -07 000000474 INF: Y Motor: Moving to 59.9126 mm, started at 74.8320 mm, delta = -14.9194 mm
17-03-18 03:44:09.114 -07 000000474 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:44:09.114 -07 000000608 INF: Z Motor: Entering MoveAbsStepped (DAC = 30476, sync = True, waitForSettling = False)
17-03-18 03:44:09.114 -07 000000608 INF: Z Motor: Moving to -0.139510 mm, started at -0.165171 mm, distance = 25.66 um
17-03-18 03:44:09.114 -07 000000480 INF: FPGA: Recv FOCMRRCUR 
17-03-18 03:44:09.114 -07 000000561 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 03:44:09.114 -07 000000480 INF: FPGA: Recv YRDPOS 153257
17-03-18 03:44:09.124 -07 000000474 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:44:09.124 -07 000000474 INF: Y Motor: Encoder = 153257 = motor step 119732.0 = 74.8325 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:44:09.124 -07 000000561 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 03:44:09.124 -07 000000474 INF: Y Motor: Last commanded position = 74.8526 mm (119764.2 steps), delta from last commanded position = -14.9400 mm (-23904.0 steps). UsingTableMove = False
17-03-18 03:44:09.124 -07 000000474 INF: Y Motor: Moving to 122701 encoder counts
17-03-18 03:44:09.134 -07 000000608 INF: FPGA: Xmit ZDACW 30476\n [Z Motor]
17-03-18 03:44:09.134 -07 000000480 INF: FPGA: Recv ZDACW
17-03-18 03:44:09.144 -07 000000474 INF: FPGA: Xmit YMVTO 122701\n [Y Motor]
17-03-18 03:44:09.144 -07 000000608 INF: FPGA: 'ZDACW 30476' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 03:44:09.154 -07 000000608 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:44:09.154 -07 000000480 INF: FPGA: Recv ZDACR 30476
17-03-18 03:44:09.164 -07 000000608 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 03:44:09.164 -07 000000608 INF: Z Motor: MoveAbsStepped took 51 ms (did NOT wait for settling yet))
17-03-18 03:44:09.244 -07 000000480 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 116, FrontChillerTemperature: 4.008536,
17-03-18 03:44:09.324 -07 000000608 INF: FPGA: Recv FOCMRRFOC
17-03-18 03:44:09.324 -07 000000561 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 193 ms to get response, and 212 ms overall
17-03-18 03:44:10.764 -07 000000608 INF: FPGA: Recv YMVTO 122703 23904
17-03-18 03:44:10.764 -07 000000474 INF: FPGA: 'YMVTO 122701' command took 0 ms to send, 1618 ms to get response, and 1644 ms overall
17-03-18 03:44:10.764 -07 000000474 INF: Y Motor: Position error before settling = 2 encoder counts (0.001 mm)
17-03-18 03:44:10.764 -07 000000474 INF: Y Motor: To move from 74.833 to 59.913 (-14.919 mm) should take 23872 steps, but required 23904 steps (14.940 mm). Slippage = 0.020 mm (0.00%).
17-03-18 03:44:10.764 -07 000000474 INF: Y Motor: FPGA move command 'YMVTO 122701' took 1644 ms, distance = 14.919 mm, average velocity = 9.075 mm/sec
17-03-18 03:44:11.604 -07 000000608 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 03:44:11.604 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 115. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1671, R2=1741, Total=3412. Warn if over 250 bubbles per interval.
17-03-18 03:44:13.614 -07 000000474 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:44:13.614 -07 000000455 INF: FPGA: Recv YRDPOS 122698
17-03-18 03:44:13.624 -07 000000474 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:44:13.624 -07 000000474 INF: Y Motor: Encoder = 122698 = motor step 95857.8 = 59.9111 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:44:13.654 -07 000000474 INF: Y Motor: After move to 59.912609, error = -0.001476, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 03:44:13.654 -07 000000474 INF: Y Motor: Position error after settling = -3 encoder counts (-0.001 mm), Delta during settling = -5 counts (-0.002 mm)
17-03-18 03:44:13.654 -07 000000474 INF: Y Motor: Moved to 59.9111 after 4548 ms
17-03-18 03:44:13.664 -07 000000512 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139510 mm (DAC = 30476)
17-03-18 03:44:13.664 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:44:13.664 -07 000000455 INF: FPGA: Recv ZSGSRD 31003
17-03-18 03:44:13.674 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 03:44:13.674 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:44:13.674 -07 000000611 INF: FPGA: Recv ZSGSRD 31012
17-03-18 03:44:13.684 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:44:13.684 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:44:13.684 -07 000000455 INF: FPGA: Recv ZSGSRD 31006
17-03-18 03:44:13.694 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:44:13.694 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:44:13.694 -07 000000382 INF: FPGA: Recv ZSGSRD 31009
17-03-18 03:44:13.704 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:44:13.704 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:44:13.704 -07 000000455 INF: FPGA: Recv ZSGSRD 31007
17-03-18 03:44:13.714 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:44:13.714 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:44:13.714 -07 000000480 INF: FPGA: Recv ZSGSRD 31006
17-03-18 03:44:13.724 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:44:13.724 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:44:13.724 -07 000000611 INF: FPGA: Recv ZSGSRD 31008
17-03-18 03:44:13.734 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 03:44:13.734 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:44:13.734 -07 000000561 INF: FPGA: Recv ZSGSRD 31005
17-03-18 03:44:13.744 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:44:13.744 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:44:13.744 -07 000000474 INF: FPGA: Recv ZSGSRD 31005
17-03-18 03:44:13.754 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:44:13.754 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:44:13.754 -07 000000455 INF: FPGA: Recv ZSGSRD 31007
17-03-18 03:44:13.764 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:44:13.764 -07 000000512 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:44:13.764 -07 000000382 INF: FPGA: Recv ZPIEZORD 26474
17-03-18 03:44:13.774 -07 000000512 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:44:13.774 -07 000000512 INF: Z Motor: Piezo is near 36.6 V (nominally 0 to 100 V), expect near 46.5 V, since DAC is at 4.650 V. Piezo Error = -9.9 V.
17-03-18 03:44:13.774 -07 000000512 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.5 um, Read 10 ADC samples: Avg = 31007 (-138.7 uncal um), Error = 0.8 uncal um, Median = 31006 (-138.7 uncal um), StdDev = 2 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 31003 (-138.7 uncal um), Max = 31012 (-138.7 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 03:44:13.774 -07 000000512 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 31007, posNoise = 5, negNoise = 4
17-03-18 03:44:13.774 -07 000000512 INF: Z Motor: After move to -0.139510, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:44:13.774 -07 000000512 INF: Z Motor: Settle wait time = 4551 ms, measure time = 109 ms (allowed 150 ms), total time = 4660 ms
17-03-18 03:44:13.774 -07 000000512 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-18 03:44:13.824 -07 000000512 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 4712 ms
17-03-18 03:44:13.824 -07 000000512 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 03:44:13.824 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:44:13.824 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:44:13.824 -07 000000455 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:44:13.824 -07 000000608 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:44:13.824 -07 000000382 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 03:44:13.824 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:44:13.824 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 03:44:13.824 -07 000000382 INF: Camera: sBCa_SetPowerMode(785074288, 1) start.
17-03-18 03:44:13.854 -07 000000382 INF: Camera: sBCa_SetPowerMode(785074288, 1) end. Duration was 23 ms.
17-03-18 03:44:13.854 -07 000000382 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 03:44:13.854 -07 000000382 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms.
17-03-18 03:44:13.854 -07 000000382 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 03:44:13.864 -07 000000382 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 03:44:13.864 -07 000000382 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 41 ms.
17-03-18 03:44:13.874 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 03:44:13.914 -07 000000480 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 03:44:14.214 -07 000000480 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 03:44:14.214 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 03:44:14.214 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 03:44:14.214 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 605009792, 0x0, 559484976) start.
17-03-18 03:44:14.254 -07 000000455 INF: FPGA: Recv @CAMSNAP 380
17-03-18 03:44:14.254 -07 000000474 INF: FPGA: Recv CAMSNAP
17-03-18 03:44:14.254 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 375 ms to get response, and 384 ms overall
17-03-18 03:44:14.334 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 605009792, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 03:44:14.334 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:44:14.334 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 03:44:14.334 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 03:44:14.354 -07 000000455 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 03:44:14.354 -07 000000512 INF: Image SNR check: start
17-03-18 03:44:14.354 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-18 03:44:14.364 -07 000000455 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 03:44:14.364 -07 000000455 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 03:44:14.374 -07 000000512 INF: Image SNR check: pass  [peak (Max-Min)=140.43]
17-03-18 03:44:14.374 -07 000000512 INF: Autofocus start
17-03-18 03:44:14.374 -07 000000512 INF: MeasureProfile start
17-03-18 03:44:14.384 -07 000000512 INF: MeasureProfile done
17-03-18 03:44:14.384 -07 000000512 INF: X=0  Z correction [um]=-0.02394831
17-03-18 03:44:14.384 -07 000000512 INF: Autofocus finished
17-03-18 03:44:14.564 -07 000000012 INF: FPGA: Recv FOCMRRIMG
17-03-18 03:44:14.564 -07 000000455 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 03:44:14.564 -07 000000610 INF: ------------ Scan Snapping tile 1 at Y-position 59.9111328125, Z-position -0.139518897890717. ----------
17-03-18 03:44:14.564 -07 000000610 INF: Cycle	116	Tile	1	Exposure Settings		A	410	G	197	T	197	C	410
17-03-18 03:44:14.574 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28983, sync = True, waitForSettling = True)
17-03-18 03:44:14.574 -07 000000610 INF: Z Motor: Moving to -0.132676 mm, started at -0.139519 mm, distance = 6.84 um
17-03-18 03:44:14.574 -07 000000610 INF: FPGA: Xmit ZDACW 28983\n [Z Motor]
17-03-18 03:44:14.574 -07 000000479 INF: FPGA: Recv ZDACW
17-03-18 03:44:14.584 -07 000000610 INF: FPGA: 'ZDACW 28983' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 03:44:14.584 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:44:14.584 -07 000000579 INF: FPGA: Recv ZDACR 28983
17-03-18 03:44:14.594 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:44:14.594 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 03:44:14.604 -07 000000479 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 116, FrontChillerTemperature: 4.027603,
17-03-18 03:44:14.744 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:44:14.744 -07 000000479 INF: FPGA: Recv ZSGSRD 29943
17-03-18 03:44:14.754 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:44:14.754 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:44:14.754 -07 000000474 INF: FPGA: Recv ZSGSRD 29944
17-03-18 03:44:14.764 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:44:14.764 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:44:14.764 -07 000000512 INF: FPGA: Recv ZSGSRD 29943
17-03-18 03:44:14.774 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:44:14.774 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:44:14.774 -07 000000012 INF: FPGA: Recv ZSGSRD 29946
17-03-18 03:44:14.784 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:44:14.784 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:44:14.784 -07 000000581 INF: FPGA: Recv ZSGSRD 29944
17-03-18 03:44:14.794 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:44:14.794 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:44:14.794 -07 000000474 INF: FPGA: Recv ZSGSRD 29941
17-03-18 03:44:14.804 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:44:14.804 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:44:14.804 -07 000000606 INF: FPGA: Recv ZSGSRD 29946
17-03-18 03:44:14.814 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:44:14.814 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:44:14.814 -07 000000012 INF: FPGA: Recv ZSGSRD 29938
17-03-18 03:44:14.824 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:44:14.824 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:44:14.824 -07 000000581 INF: FPGA: Recv ZSGSRD 29945
17-03-18 03:44:14.834 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:44:14.834 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:44:14.834 -07 000000579 INF: FPGA: Recv ZSGSRD 29938
17-03-18 03:44:14.844 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:44:14.844 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:44:14.844 -07 000000487 INF: FPGA: Recv ZPIEZORD 25321
17-03-18 03:44:14.854 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:44:14.854 -07 000000610 INF: Z Motor: Piezo is near 34.1 V (nominally 0 to 100 V), expect near 44.2 V, since DAC is at 4.423 V. Piezo Error = -10.1 V.
17-03-18 03:44:14.854 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.7 um, Read 10 ADC samples: Avg = 29943 (-131.9 uncal um), Error = 0.8 uncal um, Median = 29944 (-131.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 29938 (-131.9 uncal um), Max = 29946 (-131.9 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 03:44:14.854 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29943, posNoise = 3, negNoise = 5
17-03-18 03:44:14.854 -07 000000610 INF: Z Motor: After move to -0.132676, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:44:14.854 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 03:44:14.854 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:44:14.854 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:44:14.854 -07 000000474 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:44:14.854 -07 000000579 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:44:14.854 -07 000000455 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 03:44:14.854 -07 000000581 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 03:44:14.854 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:44:14.854 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 03:44:14.854 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 03:44:14.854 -07 000000581 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 03:44:14.854 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 03:44:14.854 -07 000000455 INF: Camera: sBCa_SetPowerMode(785074704, 1) start.
17-03-18 03:44:14.864 -07 000000581 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 03:44:14.864 -07 000000581 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 03:44:14.874 -07 000000581 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 03:44:14.874 -07 000000581 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 03:44:14.874 -07 000000455 INF: Camera: sBCa_SetPowerMode(785074704, 1) end. Duration was 19 ms.
17-03-18 03:44:14.874 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 03:44:14.884 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 03:44:14.884 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 03:44:14.884 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 03:44:14.884 -07 000000455 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 32 ms.
17-03-18 03:44:14.894 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 410 410 197 197 29160 150\n [Camera]
17-03-18 03:44:15.094 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 03:44:15.504 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 602
17-03-18 03:44:15.504 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 602
17-03-18 03:44:15.504 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:44:15.504 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:44:15.504 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 03:44:15.504 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 602
17-03-18 03:44:15.504 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 602
17-03-18 03:44:15.504 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:44:15.644 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:44:15.654 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) start.
17-03-18 03:44:15.694 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29160 795
17-03-18 03:44:15.844 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP turning grn on 945
17-03-18 03:44:15.884 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 380 ms.
17-03-18 03:44:15.884 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-18 03:44:15.884 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:44:15.884 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:44:15.884 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-18 03:44:16.024 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) end. Duration was 370 ms.
17-03-18 03:44:16.024 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 371 ms.
17-03-18 03:44:16.024 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:44:16.024 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:44:16.034 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 524 ms.
17-03-18 03:44:16.044 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1142
17-03-18 03:44:16.044 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1142
17-03-18 03:44:16.044 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:44:16.044 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1142
17-03-18 03:44:16.044 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1142
17-03-18 03:44:16.044 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:44:16.044 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:44:16.044 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-18 03:44:16.054 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:44:16.054 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 2199785120, 0x0, 418435064) start.
17-03-18 03:44:16.234 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP 1341
17-03-18 03:44:16.234 -07 000000608 INF: FPGA: Recv CAMDBLSNAP
17-03-18 03:44:16.244 -07 000000610 INF: FPGA: 'CAMDBLSNAP 410 410 197 197 29160 150' command took 2 ms to send, 1339 ms to get response, and 1348 ms overall
17-03-18 03:44:16.244 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 03:44:16.244 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 2 at Y-position 59.9111328125, Z-Position -0.132683536171883. ------
17-03-18 03:44:16.244 -07 000000581 INF: Y Motor: MoveYZ optimized starting. Moving Y to 60.7426 mm, moving Z to -0.13915 mm
17-03-18 03:44:16.244 -07 000000581 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 03:44:16.244 -07 000000608 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 03:44:16.434 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 2199785120, 0x0, 418435064) end. Duration was 384 ms.
17-03-18 03:44:16.434 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-18 03:44:16.434 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:44:16.434 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 388 ms.
17-03-18 03:44:16.434 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-18 03:44:16.434 -07 000000474 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:44:16.434 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:44:16.444 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 03:44:16.444 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 03:44:16.444 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 03:44:16.474 -07 000000579 INF: FPGA: Recv FOCMRRCUR 
17-03-18 03:44:16.474 -07 000000608 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 227 ms to get response, and 232 ms overall
17-03-18 03:44:16.474 -07 000000608 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 03:44:16.474 -07 000000474 INF: Y Motor: Entering MoveAbsStepped (target = 97188 steps, sync = True, waitForSettling = True)
17-03-18 03:44:16.474 -07 000000474 INF: Y Motor: Moving to 60.7426 mm, started at 59.9111 mm, delta = 0.8315 mm
17-03-18 03:44:16.474 -07 000000579 INF: Z Motor: Entering MoveAbsStepped (DAC = 30398, sync = True, waitForSettling = False)
17-03-18 03:44:16.474 -07 000000579 INF: Z Motor: Moving to -0.139153 mm, started at -0.132684 mm, distance = -6.47 um
17-03-18 03:44:16.484 -07 000000579 INF: FPGA: Xmit ZDACW 30398\n [Z Motor]
17-03-18 03:44:16.494 -07 000000474 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:44:17.104 -07 000000462 INF: FPGA: Recv ZDACW
17-03-18 03:44:17.104 -07 000000462 INF: FPGA: Recv YRDPOS 122698
17-03-18 03:44:17.104 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 03:44:17.104 -07 000000462 INF: FPGA: Recv FOCMRRFOC
17-03-18 03:44:17.104 -07 000000608 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 620 ms to get response, and 622 ms overall
17-03-18 03:44:17.104 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 115. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1671, R2=1741, Total=3412. Warn if over 250 bubbles per interval.
17-03-18 03:44:17.104 -07 000000579 INF: FPGA: 'ZDACW 30398' command took 0 ms to send, 610 ms to get response, and 621 ms overall
17-03-18 03:44:17.104 -07 000000474 INF: FPGA: 'YRDPOS' command took 0 ms to send, 600 ms to get response, and 622 ms overall
17-03-18 03:44:17.104 -07 000000474 INF: Y Motor: Encoder = 122698 = motor step 95857.8 = 59.9111 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:44:17.104 -07 000000474 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 03:44:17.104 -07 000000474 INF: Y Motor: Moving 1330 steps2
17-03-18 03:44:17.114 -07 000000474 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 03:44:17.124 -07 000000579 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:44:17.124 -07 000000608 INF: FPGA: Recv ZDACR 30398
17-03-18 03:44:17.134 -07 000000579 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-18 03:44:17.134 -07 000000579 INF: Z Motor: MoveAbsStepped took 653 ms (did NOT wait for settling yet))
17-03-18 03:44:17.484 -07 000000462 INF: FPGA: Recv YMVTILE
17-03-18 03:44:17.484 -07 000000474 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 385 ms overall
17-03-18 03:44:17.524 -07 000000474 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:44:17.524 -07 000000608 INF: FPGA: Recv YRDPOS 124381
17-03-18 03:44:17.534 -07 000000474 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 03:44:17.534 -07 000000474 INF: Y Motor: Encoder = 124381 = motor step 97172.7 = 60.7329 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:44:17.534 -07 000000474 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-18 03:44:17.534 -07 000000474 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 385 ms, distance = 0.831 mm, average velocity = 2.160 mm/sec
17-03-18 03:44:18.484 -07 000000474 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:44:18.484 -07 000000462 INF: FPGA: Recv YRDPOS 124381
17-03-18 03:44:18.494 -07 000000474 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:44:18.494 -07 000000474 INF: Y Motor: Encoder = 124381 = motor step 97172.7 = 60.7329 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:44:18.524 -07 000000474 INF: Y Motor: After move to 60.742607, error = -0.009697, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 03:44:18.524 -07 000000474 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 03:44:18.524 -07 000000474 INF: Y Motor: Moved to 60.7329 after 2042 ms (table move)
17-03-18 03:44:18.524 -07 000000581 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139153 mm (DAC = 30398)
17-03-18 03:44:18.524 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:44:18.524 -07 000000462 INF: FPGA: Recv ZSGSRD 30965
17-03-18 03:44:18.534 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 03:44:18.534 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:44:18.534 -07 000000608 INF: FPGA: Recv ZSGSRD 30940
17-03-18 03:44:18.544 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:44:18.544 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:44:18.544 -07 000000474 INF: FPGA: Recv ZSGSRD 30952
17-03-18 03:44:18.554 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:44:18.554 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:44:18.554 -07 000000579 INF: FPGA: Recv ZSGSRD 30949
17-03-18 03:44:18.564 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:44:18.564 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:44:18.564 -07 000000462 INF: FPGA: Recv ZSGSRD 30957
17-03-18 03:44:18.574 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:44:18.574 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:44:18.574 -07 000000608 INF: FPGA: Recv ZSGSRD 30950
17-03-18 03:44:18.584 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:44:18.584 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:44:18.584 -07 000000608 INF: FPGA: Recv ZSGSRD 30954
17-03-18 03:44:18.594 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:44:18.594 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:44:18.594 -07 000000462 INF: FPGA: Recv ZSGSRD 30946
17-03-18 03:44:18.604 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:44:18.604 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:44:18.604 -07 000000462 INF: FPGA: Recv ZSGSRD 30949
17-03-18 03:44:18.614 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:44:18.614 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:44:18.614 -07 000000608 INF: FPGA: Recv ZSGSRD 30956
17-03-18 03:44:18.624 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:44:18.624 -07 000000581 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:44:18.624 -07 000000608 INF: FPGA: Recv ZPIEZORD 26695
17-03-18 03:44:18.634 -07 000000581 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:44:18.634 -07 000000581 INF: Z Motor: Piezo is near 37.0 V (nominally 0 to 100 V), expect near 46.4 V, since DAC is at 4.638 V. Piezo Error = -9.4 V.
17-03-18 03:44:18.634 -07 000000581 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.2 um, Read 10 ADC samples: Avg = 30952 (-138.4 uncal um), Error = 0.8 uncal um, Median = 30951 (-138.4 uncal um), StdDev = 7 (0.0 uncal um), Range = 25 (0.2 uncal um), Min = 30940 (-138.3 uncal um), Max = 30965 (-138.4 uncal um), Pos Noise = 13 (0.1 uncal um), Neg Noise = 12 (0.1 uncal um)
17-03-18 03:44:18.634 -07 000000581 INF: Z Motor: ADC noise = 13, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30952, posNoise = 13, negNoise = 12
17-03-18 03:44:18.634 -07 000000581 INF: Z Motor: After move to -0.139153, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:44:18.634 -07 000000581 INF: Z Motor: Settle wait time = 2045 ms, measure time = 108 ms (allowed 150 ms), total time = 2153 ms
17-03-18 03:44:18.634 -07 000000581 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-18 03:44:18.684 -07 000000581 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2435 ms
17-03-18 03:44:18.684 -07 000000581 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 03:44:18.684 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:44:18.684 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:44:18.684 -07 000000467 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:44:18.684 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:44:18.684 -07 000000474 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 03:44:18.684 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:44:18.684 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 03:44:18.684 -07 000000474 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 03:44:18.694 -07 000000474 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 03:44:18.694 -07 000000474 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 03:44:18.704 -07 000000474 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-18 03:44:18.704 -07 000000474 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-18 03:44:18.704 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 03:44:18.754 -07 000000474 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 03:44:19.054 -07 000000608 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 03:44:19.054 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 03:44:19.054 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 03:44:19.054 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 619685872, 0x0, 559484976) start.
17-03-18 03:44:19.084 -07 000000437 INF: FPGA: Recv @CAMSNAP 380
17-03-18 03:44:19.094 -07 000000581 INF: FPGA: Recv CAMSNAP
17-03-18 03:44:19.094 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 380 ms to get response, and 384 ms overall
17-03-18 03:44:19.184 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 619685872, 0x0, 559484976) end. Duration was 127 ms.
17-03-18 03:44:19.184 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:44:19.184 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 03:44:19.184 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 130 ms.
17-03-18 03:44:19.194 -07 000000579 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 03:44:19.194 -07 000000462 INF: Autofocus start
17-03-18 03:44:19.194 -07 000000462 INF: MeasureProfile start
17-03-18 03:44:19.194 -07 000000474 INF: FPGA: Recv FOCMRRCUR 
17-03-18 03:44:19.204 -07 000000579 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 03:44:19.204 -07 000000579 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 03:44:19.204 -07 000000462 INF: MeasureProfile done
17-03-18 03:44:19.204 -07 000000462 INF: X=0  Z correction [um]=-0.02394831
17-03-18 03:44:19.204 -07 000000462 INF: Autofocus finished
17-03-18 03:44:19.404 -07 000000474 INF: FPGA: Recv FOCMRRIMG
17-03-18 03:44:19.404 -07 000000579 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 03:44:19.404 -07 000000610 INF: ------------ Scan Snapping tile 2 at Y-position 60.73291015625, Z-position -0.13916556622292. ----------
17-03-18 03:44:19.404 -07 000000610 INF: Cycle	116	Tile	2	Exposure Settings		A	410	G	197	T	197	C	410
17-03-18 03:44:19.414 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28905, sync = True, waitForSettling = True)
17-03-18 03:44:19.414 -07 000000610 INF: Z Motor: Moving to -0.132319 mm, started at -0.139166 mm, distance = 6.85 um
17-03-18 03:44:19.414 -07 000000610 INF: FPGA: Xmit ZDACW 28905\n [Z Motor]
17-03-18 03:44:19.414 -07 000000474 INF: FPGA: Recv ZDACW
17-03-18 03:44:19.424 -07 000000610 INF: FPGA: 'ZDACW 28905' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:44:19.424 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:44:19.424 -07 000000382 INF: FPGA: Recv ZDACR 28905
17-03-18 03:44:19.434 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:44:19.434 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 03:44:19.584 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:44:19.584 -07 000000467 INF: FPGA: Recv ZSGSRD 29889
17-03-18 03:44:19.594 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:44:19.594 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:44:19.594 -07 000000382 INF: FPGA: Recv ZSGSRD 29892
17-03-18 03:44:19.604 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:44:19.604 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:44:19.604 -07 000000462 INF: FPGA: Recv ZSGSRD 29883
17-03-18 03:44:19.614 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:44:19.614 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:44:19.614 -07 000000474 INF: FPGA: Recv ZSGSRD 29887
17-03-18 03:44:19.624 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:44:19.624 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:44:19.624 -07 000000462 INF: FPGA: Recv ZSGSRD 29893
17-03-18 03:44:19.634 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:44:19.634 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:44:19.634 -07 000000579 INF: FPGA: Recv ZSGSRD 29879
17-03-18 03:44:19.644 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:44:19.654 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:44:19.654 -07 000000382 INF: FPGA: Recv ZSGSRD 29887
17-03-18 03:44:19.664 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 03:44:19.664 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:44:19.664 -07 000000579 INF: FPGA: Recv ZSGSRD 29886
17-03-18 03:44:19.674 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:44:19.674 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:44:19.674 -07 000000474 INF: FPGA: Recv ZSGSRD 29889
17-03-18 03:44:19.684 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:44:19.684 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:44:19.684 -07 000000467 INF: FPGA: Recv ZSGSRD 29882
17-03-18 03:44:19.694 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:44:19.694 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:44:19.694 -07 000000581 INF: FPGA: Recv ZPIEZORD 25318
17-03-18 03:44:19.704 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:44:19.704 -07 000000610 INF: Z Motor: Piezo is near 34.1 V (nominally 0 to 100 V), expect near 44.1 V, since DAC is at 4.411 V. Piezo Error = -10.0 V.
17-03-18 03:44:19.704 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.3 um, Read 10 ADC samples: Avg = 29887 (-131.5 uncal um), Error = 0.8 uncal um, Median = 29887 (-131.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 29879 (-131.5 uncal um), Max = 29893 (-131.6 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 03:44:19.704 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29887, posNoise = 6, negNoise = 8
17-03-18 03:44:19.704 -07 000000610 INF: Z Motor: After move to -0.132319, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:44:19.704 -07 000000610 INF: Z Motor: MoveAbsStepped took 290 ms)
17-03-18 03:44:19.704 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:44:19.704 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:44:19.704 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:44:19.704 -07 000000474 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:44:19.704 -07 000000608 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 03:44:19.704 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:44:19.704 -07 000000581 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 03:44:19.704 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 03:44:19.704 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 03:44:19.704 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 03:44:19.704 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 03:44:19.704 -07 000000581 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 03:44:19.704 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 03:44:19.704 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 03:44:19.714 -07 000000581 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 03:44:19.714 -07 000000581 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 03:44:19.724 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 13 ms.
17-03-18 03:44:19.724 -07 000000608 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 17 ms.
17-03-18 03:44:19.724 -07 000000581 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms.
17-03-18 03:44:19.724 -07 000000581 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 19 ms.
17-03-18 03:44:19.724 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 410 410 197 197 29082 150\n [Camera]
17-03-18 03:44:19.944 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP turning red on 199
17-03-18 03:44:19.964 -07 000000437 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 116, FrontChillerTemperature: 4.02213,
17-03-18 03:44:20.344 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 602
17-03-18 03:44:20.344 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 602
17-03-18 03:44:20.344 -07 000000581 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:44:20.344 -07 000000581 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:44:20.344 -07 000000581 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) start.
17-03-18 03:44:20.344 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 602
17-03-18 03:44:20.344 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 602
17-03-18 03:44:20.344 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:44:20.344 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:44:20.344 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) start.
17-03-18 03:44:20.544 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29082 800
17-03-18 03:44:20.684 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP turning grn on 945
17-03-18 03:44:20.744 -07 000000581 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) end. Duration was 401 ms.
17-03-18 03:44:20.744 -07 000000581 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 03:44:20.744 -07 000000581 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:44:20.744 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) end. Duration was 401 ms.
17-03-18 03:44:20.744 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 03:44:20.744 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:44:20.754 -07 000000581 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:44:20.754 -07 000000581 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-18 03:44:20.754 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:44:20.754 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-18 03:44:20.884 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1142
17-03-18 03:44:20.884 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1142
17-03-18 03:44:20.884 -07 000000581 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:44:20.884 -07 000000581 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:44:20.884 -07 000000581 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 03:44:20.884 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1142
17-03-18 03:44:20.884 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1142
17-03-18 03:44:20.884 -07 000000437 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:44:20.884 -07 000000437 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:44:20.884 -07 000000437 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-18 03:44:21.074 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP 1334
17-03-18 03:44:21.074 -07 000000579 INF: FPGA: Recv CAMDBLSNAP
17-03-18 03:44:21.074 -07 000000610 INF: FPGA: 'CAMDBLSNAP 410 410 197 197 29082 150' command took 2 ms to send, 1335 ms to get response, and 1347 ms overall
17-03-18 03:44:21.074 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 03:44:21.074 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 3 at Y-position 60.73291015625, Z-Position -0.132323780291945. ------
17-03-18 03:44:21.084 -07 000000474 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 03:44:21.084 -07 000000579 INF: Y Motor: MoveYZ optimized starting. Moving Y to 61.5726 mm, moving Z to -0.13904 mm
17-03-18 03:44:21.084 -07 000000579 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 03:44:21.084 -07 000000382 INF: FPGA: Recv FOCMRRCUR 
17-03-18 03:44:21.084 -07 000000608 INF: Y Motor: Entering MoveAbsStepped (target = 98516 steps, sync = True, waitForSettling = True)
17-03-18 03:44:21.084 -07 000000608 INF: Y Motor: Moving to 61.5726 mm, started at 60.7329 mm, delta = 0.8397 mm
17-03-18 03:44:21.084 -07 000000467 INF: Z Motor: Entering MoveAbsStepped (DAC = 30373, sync = True, waitForSettling = False)
17-03-18 03:44:21.084 -07 000000467 INF: Z Motor: Moving to -0.139039 mm, started at -0.132324 mm, distance = -6.71 um
17-03-18 03:44:21.094 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:44:21.094 -07 000000474 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 03:44:21.094 -07 000000480 INF: FPGA: Recv YRDPOS 124382
17-03-18 03:44:21.104 -07 000000467 INF: FPGA: Xmit ZDACW 30373\n [Z Motor]
17-03-18 03:44:21.104 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-18 03:44:21.104 -07 000000608 INF: Y Motor: Encoder = 124382 = motor step 97173.4 = 60.7334 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:44:21.104 -07 000000608 INF: Y Motor: Last commanded position = 60.7426 mm (97188.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 03:44:21.104 -07 000000608 INF: Y Motor: Moving 1343 steps-20
17-03-18 03:44:21.114 -07 000000474 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 03:44:21.124 -07 000000608 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 03:44:21.284 -07 000000581 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 403 ms.
17-03-18 03:44:21.284 -07 000000581 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 03:44:21.284 -07 000000581 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:44:21.294 -07 000000437 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 403 ms.
17-03-18 03:44:21.294 -07 000000437 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-18 03:44:21.294 -07 000000437 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:44:21.294 -07 000000437 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:44:21.294 -07 000000581 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 03:44:21.294 -07 000000581 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-18 03:44:21.304 -07 000000437 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-18 03:44:22.184 -07 000000462 INF: FPGA: Recv ZDACW
17-03-18 03:44:22.184 -07 000000462 INF: FPGA: Recv FOCMRRFOC
17-03-18 03:44:22.184 -07 000000462 INF: FPGA: Recv YMVTILE
17-03-18 03:44:22.184 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 03:44:22.184 -07 000000608 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 1054 ms to get response, and 1076 ms overall
17-03-18 03:44:22.184 -07 000000474 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 1064 ms to get response, and 1094 ms overall
17-03-18 03:44:22.184 -07 000000467 INF: FPGA: 'ZDACW 30373' command took 0 ms to send, 1074 ms to get response, and 1096 ms overall
17-03-18 03:44:22.184 -07 000000467 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:44:22.184 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 115. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1671, R2=1741, Total=3412. Warn if over 250 bubbles per interval.
17-03-18 03:44:22.184 -07 000000455 INF: FPGA: Recv ZDACR 30373
17-03-18 03:44:22.194 -07 000000467 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 03:44:22.194 -07 000000467 INF: Z Motor: MoveAbsStepped took 1102 ms (did NOT wait for settling yet))
17-03-18 03:44:22.264 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:44:22.264 -07 000000462 INF: FPGA: Recv YRDPOS 126083
17-03-18 03:44:22.274 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 03:44:22.274 -07 000000608 INF: Y Motor: Encoder = 126083 = motor step 98502.3 = 61.5640 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:44:22.274 -07 000000608 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-18 03:44:22.274 -07 000000608 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 1076 ms, distance = 0.840 mm, average velocity = 0.780 mm/sec
17-03-18 03:44:23.224 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:44:23.224 -07 000000462 INF: FPGA: Recv YRDPOS 126083
17-03-18 03:44:23.234 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:44:23.234 -07 000000608 INF: Y Motor: Encoder = 126083 = motor step 98502.3 = 61.5640 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:44:23.264 -07 000000608 INF: Y Motor: After move to 61.572609, error = -0.008644, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 03:44:23.264 -07 000000608 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 03:44:23.264 -07 000000608 INF: Y Motor: Moved to 61.5640 after 2173 ms (table move)
17-03-18 03:44:23.264 -07 000000579 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139039 mm (DAC = 30373)
17-03-18 03:44:23.264 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:44:23.264 -07 000000462 INF: FPGA: Recv ZSGSRD 30941
17-03-18 03:44:23.274 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 03:44:23.274 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:44:23.274 -07 000000467 INF: FPGA: Recv ZSGSRD 30941
17-03-18 03:44:23.284 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:44:23.284 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:44:23.284 -07 000000382 INF: FPGA: Recv ZSGSRD 30929
17-03-18 03:44:23.294 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:44:23.294 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:44:23.294 -07 000000467 INF: FPGA: Recv ZSGSRD 30933
17-03-18 03:44:23.304 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:44:23.304 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:44:23.304 -07 000000382 INF: FPGA: Recv ZSGSRD 30931
17-03-18 03:44:23.314 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:44:23.314 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:44:23.314 -07 000000467 INF: FPGA: Recv ZSGSRD 30929
17-03-18 03:44:23.324 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:44:23.324 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:44:23.324 -07 000000608 INF: FPGA: Recv ZSGSRD 30931
17-03-18 03:44:23.334 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:44:23.334 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:44:23.344 -07 000000480 INF: FPGA: Recv ZSGSRD 30932
17-03-18 03:44:23.344 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:44:23.344 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:44:23.344 -07 000000608 INF: FPGA: Recv ZSGSRD 30935
17-03-18 03:44:23.354 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:44:23.354 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:44:23.354 -07 000000455 INF: FPGA: Recv ZSGSRD 30931
17-03-18 03:44:23.364 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 03:44:23.364 -07 000000579 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:44:23.364 -07 000000608 INF: FPGA: Recv ZPIEZORD 26725
17-03-18 03:44:23.374 -07 000000579 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:44:23.374 -07 000000579 INF: Z Motor: Piezo is near 37.1 V (nominally 0 to 100 V), expect near 46.3 V, since DAC is at 4.635 V. Piezo Error = -9.3 V.
17-03-18 03:44:23.374 -07 000000579 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.0 um, Read 10 ADC samples: Avg = 30933 (-138.2 uncal um), Error = 0.8 uncal um, Median = 30932 (-138.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 30929 (-138.2 uncal um), Max = 30941 (-138.3 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 03:44:23.374 -07 000000579 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30933, posNoise = 8, negNoise = 4
17-03-18 03:44:23.374 -07 000000579 INF: Z Motor: After move to -0.139039, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:44:23.374 -07 000000579 INF: Z Motor: Settle wait time = 2176 ms, measure time = 107 ms (allowed 150 ms), total time = 2283 ms
17-03-18 03:44:23.374 -07 000000579 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-18 03:44:23.424 -07 000000579 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2336 ms
17-03-18 03:44:23.424 -07 000000579 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 03:44:23.424 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:44:23.424 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:44:23.424 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:44:23.424 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 03:44:23.424 -07 000000467 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:44:23.424 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:44:23.424 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 03:44:23.424 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 03:44:23.434 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 03:44:23.434 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 03:44:23.434 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 03:44:23.434 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 03:44:23.444 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 03:44:23.484 -07 000000455 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 03:44:23.784 -07 000000480 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 03:44:23.784 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 03:44:23.784 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 03:44:23.784 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 677954600, 0x0, 559484976) start.
17-03-18 03:44:23.824 -07 000000462 INF: FPGA: Recv @CAMSNAP 380
17-03-18 03:44:23.824 -07 000000455 INF: FPGA: Recv CAMSNAP
17-03-18 03:44:23.824 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 384 ms overall
17-03-18 03:44:23.914 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 677954600, 0x0, 559484976) end. Duration was 125 ms.
17-03-18 03:44:23.914 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:44:23.914 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 03:44:23.914 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 126 ms.
17-03-18 03:44:23.924 -07 000000480 INF: Autofocus start
17-03-18 03:44:23.924 -07 000000480 INF: MeasureProfile start
17-03-18 03:44:23.924 -07 000000467 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 03:44:23.924 -07 000000608 INF: FPGA: Recv FOCMRRCUR 
17-03-18 03:44:23.934 -07 000000467 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 03:44:23.934 -07 000000467 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 03:44:23.934 -07 000000480 INF: MeasureProfile done
17-03-18 03:44:23.934 -07 000000480 INF: X=0  Z correction [um]=-0.02394831
17-03-18 03:44:23.934 -07 000000480 INF: Autofocus finished
17-03-18 03:44:24.144 -07 000000480 INF: FPGA: Recv FOCMRRIMG
17-03-18 03:44:24.144 -07 000000467 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 200 ms to get response, and 207 ms overall
17-03-18 03:44:24.144 -07 000000610 INF: ------------ Scan Snapping tile 3 at Y-position 61.56396484375, Z-position -0.139043506192227. ----------
17-03-18 03:44:24.144 -07 000000610 INF: Cycle	116	Tile	3	Exposure Settings		A	410	G	197	T	197	C	410
17-03-18 03:44:24.144 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28880, sync = True, waitForSettling = True)
17-03-18 03:44:24.144 -07 000000610 INF: Z Motor: Moving to -0.132204 mm, started at -0.139044 mm, distance = 6.84 um
17-03-18 03:44:24.144 -07 000000610 INF: FPGA: Xmit ZDACW 28880\n [Z Motor]
17-03-18 03:44:24.154 -07 000000382 INF: FPGA: Recv ZDACW
17-03-18 03:44:24.154 -07 000000610 INF: FPGA: 'ZDACW 28880' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 03:44:24.154 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:44:24.154 -07 000000625 INF: FPGA: Recv ZDACR 28880
17-03-18 03:44:24.164 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:44:24.164 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 03:44:24.314 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:44:24.314 -07 000000467 INF: FPGA: Recv ZSGSRD 29883
17-03-18 03:44:24.324 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:44:24.324 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:44:24.324 -07 000000625 INF: FPGA: Recv ZSGSRD 29875
17-03-18 03:44:24.334 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:44:24.334 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:44:24.334 -07 000000455 INF: FPGA: Recv ZSGSRD 29869
17-03-18 03:44:24.344 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:44:24.344 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:44:24.344 -07 000000579 INF: FPGA: Recv ZSGSRD 29867
17-03-18 03:44:24.354 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:44:24.354 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:44:24.354 -07 000000608 INF: FPGA: Recv ZSGSRD 29868
17-03-18 03:44:24.364 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:44:24.364 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:44:24.364 -07 000000382 INF: FPGA: Recv ZSGSRD 29876
17-03-18 03:44:24.374 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:44:24.374 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:44:24.374 -07 000000467 INF: FPGA: Recv ZSGSRD 29860
17-03-18 03:44:24.384 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:44:24.384 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:44:24.384 -07 000000579 INF: FPGA: Recv ZSGSRD 29875
17-03-18 03:44:24.394 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:44:24.394 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:44:24.394 -07 000000608 INF: FPGA: Recv ZSGSRD 29873
17-03-18 03:44:24.404 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:44:24.404 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:44:24.404 -07 000000462 INF: FPGA: Recv ZSGSRD 29866
17-03-18 03:44:24.414 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:44:24.414 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:44:24.414 -07 000000480 INF: FPGA: Recv ZPIEZORD 25316
17-03-18 03:44:24.424 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:44:24.424 -07 000000610 INF: Z Motor: Piezo is near 34.1 V (nominally 0 to 100 V), expect near 44.1 V, since DAC is at 4.407 V. Piezo Error = -10.0 V.
17-03-18 03:44:24.424 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.2 um, Read 10 ADC samples: Avg = 29871 (-131.4 uncal um), Error = 0.8 uncal um, Median = 29871 (-131.4 uncal um), StdDev = 6 (0.0 uncal um), Range = 23 (0.1 uncal um), Min = 29860 (-131.4 uncal um), Max = 29883 (-131.5 uncal um), Pos Noise = 12 (0.1 uncal um), Neg Noise = 11 (0.1 uncal um)
17-03-18 03:44:24.424 -07 000000610 INF: Z Motor: ADC noise = 12, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29871, posNoise = 12, negNoise = 11
17-03-18 03:44:24.424 -07 000000610 INF: Z Motor: After move to -0.132204, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:44:24.424 -07 000000610 INF: Z Motor: MoveAbsStepped took 273 ms)
17-03-18 03:44:24.424 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:44:24.424 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:44:24.424 -07 000000625 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:44:24.424 -07 000000579 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:44:24.424 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 03:44:24.424 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 03:44:24.424 -07 000000467 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 03:44:24.424 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:44:24.424 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 03:44:24.424 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 03:44:24.424 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 03:44:24.424 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 03:44:24.424 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 03:44:24.424 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 03:44:24.434 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-18 03:44:24.434 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 03:44:24.444 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 03:44:24.444 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 03:44:24.444 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 03:44:24.444 -07 000000467 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 03:44:24.444 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 410 410 197 197 29057 150\n [Camera]
17-03-18 03:44:24.644 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 03:44:25.054 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 602
17-03-18 03:44:25.054 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 602
17-03-18 03:44:25.064 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:44:25.064 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:44:25.064 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-18 03:44:25.064 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 602
17-03-18 03:44:25.064 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 602
17-03-18 03:44:25.064 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:44:25.064 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:44:25.064 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-18 03:44:25.254 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29057 795
17-03-18 03:44:25.324 -07 000000480 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 116, FrontChillerTemperature: 4.011254,
17-03-18 03:44:25.404 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP turning grn on 945
17-03-18 03:44:25.444 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 385 ms.
17-03-18 03:44:25.444 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-18 03:44:25.444 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:44:25.454 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:44:25.454 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 394 ms.
17-03-18 03:44:25.454 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 03:44:25.454 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:44:25.454 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 03:44:25.454 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:44:25.454 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 03:44:25.594 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1142
17-03-18 03:44:25.594 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1142
17-03-18 03:44:25.604 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:44:25.604 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:44:25.604 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) start.
17-03-18 03:44:25.604 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1142
17-03-18 03:44:25.604 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1142
17-03-18 03:44:25.604 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:44:25.604 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:44:25.604 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) start.
17-03-18 03:44:25.794 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP 1335
17-03-18 03:44:25.794 -07 000000455 INF: FPGA: Recv CAMDBLSNAP
17-03-18 03:44:25.794 -07 000000610 INF: FPGA: 'CAMDBLSNAP 410 410 197 197 29057 150' command took 2 ms to send, 1330 ms to get response, and 1342 ms overall
17-03-18 03:44:25.794 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 03:44:25.794 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 4 at Y-position 61.56396484375, Z-Position -0.132220992897677. ------
17-03-18 03:44:25.794 -07 000000462 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 03:44:25.794 -07 000000467 INF: Y Motor: MoveYZ optimized starting. Moving Y to 62.4026 mm, moving Z to -0.13861 mm
17-03-18 03:44:25.794 -07 000000467 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 03:44:25.794 -07 000000455 INF: Y Motor: Entering MoveAbsStepped (target = 99844 steps, sync = True, waitForSettling = True)
17-03-18 03:44:25.794 -07 000000455 INF: Y Motor: Moving to 62.4026 mm, started at 61.5640 mm, delta = 0.8386 mm
17-03-18 03:44:25.794 -07 000000382 INF: Z Motor: Entering MoveAbsStepped (DAC = 30279, sync = True, waitForSettling = False)
17-03-18 03:44:25.794 -07 000000382 INF: Z Motor: Moving to -0.138608 mm, started at -0.132221 mm, distance = -6.39 um
17-03-18 03:44:25.794 -07 000000480 INF: FPGA: Recv FOCMRRCUR 
17-03-18 03:44:25.804 -07 000000462 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 03:44:25.804 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:44:25.804 -07 000000012 INF: FPGA: Recv YRDPOS 126083
17-03-18 03:44:25.814 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-18 03:44:25.814 -07 000000455 INF: Y Motor: Encoder = 126083 = motor step 98502.3 = 61.5640 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:44:25.814 -07 000000455 INF: Y Motor: Last commanded position = 61.5726 mm (98516.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 03:44:25.814 -07 000000455 INF: Y Motor: Moving 1342 steps-18
17-03-18 03:44:25.814 -07 000000382 INF: FPGA: Xmit ZDACW 30279\n [Z Motor]
17-03-18 03:44:25.814 -07 000000012 INF: FPGA: Recv ZDACW
17-03-18 03:44:25.824 -07 000000462 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 03:44:25.824 -07 000000382 INF: FPGA: 'ZDACW 30279' command took 1 ms to send, 0 ms to get response, and 21 ms overall
17-03-18 03:44:25.834 -07 000000455 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 03:44:25.844 -07 000000382 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:44:25.844 -07 000000012 INF: FPGA: Recv ZDACR 30279
17-03-18 03:44:25.854 -07 000000382 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 03:44:25.854 -07 000000382 INF: Z Motor: MoveAbsStepped took 51 ms (did NOT wait for settling yet))
17-03-18 03:44:26.004 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) end. Duration was 403 ms.
17-03-18 03:44:26.004 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 03:44:26.004 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:44:26.004 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) end. Duration was 402 ms.
17-03-18 03:44:26.004 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-18 03:44:26.004 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:44:26.004 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:44:26.014 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 03:44:26.014 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-18 03:44:26.014 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-18 03:44:26.024 -07 000000625 INF: FPGA: Recv FOCMRRFOC
17-03-18 03:44:26.024 -07 000000462 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 03:44:26.204 -07 000000382 INF: FPGA: Recv YMVTILE
17-03-18 03:44:26.204 -07 000000455 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 03:44:26.254 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:44:26.254 -07 000000512 INF: FPGA: Recv YRDPOS 127786
17-03-18 03:44:26.264 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 03:44:26.264 -07 000000455 INF: Y Motor: Encoder = 127786 = motor step 99832.8 = 62.3955 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:44:26.264 -07 000000455 INF: Y Motor: Position error before settling (table move) = -15 encoder counts (-0.007 mm)
17-03-18 03:44:26.264 -07 000000455 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.839 mm, average velocity = 2.107 mm/sec
17-03-18 03:44:26.604 -07 000000487 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 03:44:26.604 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 115. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1671, R2=1741, Total=3412. Warn if over 250 bubbles per interval.
17-03-18 03:44:27.214 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:44:27.214 -07 000000462 INF: FPGA: Recv YRDPOS 127786
17-03-18 03:44:27.224 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:44:27.224 -07 000000455 INF: Y Motor: Encoder = 127786 = motor step 99832.8 = 62.3955 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:44:27.254 -07 000000455 INF: Y Motor: After move to 62.402607, error = -0.007099, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 03:44:27.254 -07 000000455 INF: Y Motor: Position error after settling (table move) = -15 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 03:44:27.254 -07 000000455 INF: Y Motor: Moved to 62.3955 after 1460 ms (table move)
17-03-18 03:44:27.264 -07 000000467 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138608 mm (DAC = 30279)
17-03-18 03:44:27.264 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:44:27.264 -07 000000462 INF: FPGA: Recv ZSGSRD 30876
17-03-18 03:44:27.274 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 03:44:27.274 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:44:27.274 -07 000000455 INF: FPGA: Recv ZSGSRD 30870
17-03-18 03:44:27.284 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:44:27.284 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:44:27.284 -07 000000462 INF: FPGA: Recv ZSGSRD 30867
17-03-18 03:44:27.294 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:44:27.294 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:44:27.294 -07 000000012 INF: FPGA: Recv ZSGSRD 30861
17-03-18 03:44:27.304 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:44:27.304 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:44:27.304 -07 000000462 INF: FPGA: Recv ZSGSRD 30865
17-03-18 03:44:27.314 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:44:27.314 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:44:27.314 -07 000000611 INF: FPGA: Recv ZSGSRD 30866
17-03-18 03:44:27.324 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:44:27.324 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:44:27.324 -07 000000462 INF: FPGA: Recv ZSGSRD 30857
17-03-18 03:44:27.334 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:44:27.334 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:44:27.334 -07 000000012 INF: FPGA: Recv ZSGSRD 30863
17-03-18 03:44:27.344 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:44:27.344 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:44:27.344 -07 000000611 INF: FPGA: Recv ZSGSRD 30871
17-03-18 03:44:27.354 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:44:27.354 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:44:27.354 -07 000000455 INF: FPGA: Recv ZSGSRD 30875
17-03-18 03:44:27.364 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:44:27.364 -07 000000467 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:44:27.364 -07 000000012 INF: FPGA: Recv ZPIEZORD 26646
17-03-18 03:44:27.374 -07 000000467 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:44:27.374 -07 000000467 INF: Z Motor: Piezo is near 36.9 V (nominally 0 to 100 V), expect near 46.2 V, since DAC is at 4.620 V. Piezo Error = -9.3 V.
17-03-18 03:44:27.374 -07 000000467 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.6 um, Read 10 ADC samples: Avg = 30867 (-137.8 uncal um), Error = 0.8 uncal um, Median = 30866 (-137.8 uncal um), StdDev = 6 (0.0 uncal um), Range = 19 (0.1 uncal um), Min = 30857 (-137.8 uncal um), Max = 30876 (-137.9 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-18 03:44:27.374 -07 000000467 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30867, posNoise = 9, negNoise = 10
17-03-18 03:44:27.374 -07 000000467 INF: Z Motor: After move to -0.138608, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:44:27.374 -07 000000467 INF: Z Motor: Settle wait time = 1466 ms, measure time = 106 ms (allowed 150 ms), total time = 1572 ms
17-03-18 03:44:27.374 -07 000000467 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-18 03:44:27.424 -07 000000467 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1623 ms
17-03-18 03:44:27.424 -07 000000467 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 03:44:27.424 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:44:27.424 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:44:27.424 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:44:27.424 -07 000000611 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:44:27.434 -07 000000455 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 03:44:27.434 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:44:27.434 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 03:44:27.434 -07 000000455 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 03:44:27.434 -07 000000455 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 03:44:27.434 -07 000000455 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 03:44:27.444 -07 000000455 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 03:44:27.444 -07 000000455 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-18 03:44:27.444 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 03:44:27.484 -07 000000382 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 03:44:27.784 -07 000000382 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 03:44:27.784 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 03:44:27.784 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 03:44:27.914 -07 000000462 INF: FPGA: Recv @CAMSNAP 380
17-03-18 03:44:27.914 -07 000000462 INF: FPGA: Recv CAMSNAP
17-03-18 03:44:27.914 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 469 ms to get response, and 476 ms overall
17-03-18 03:44:27.914 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1201016592, 0x0, 559484976) start.
17-03-18 03:44:28.034 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1201016592, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 03:44:28.034 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:44:28.034 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 03:44:28.034 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 247 ms.
17-03-18 03:44:28.114 -07 000000487 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 03:44:28.114 -07 000000462 INF: Autofocus start
17-03-18 03:44:28.114 -07 000000462 INF: MeasureProfile start
17-03-18 03:44:28.114 -07 000000012 INF: FPGA: Recv FOCMRRCUR 
17-03-18 03:44:28.124 -07 000000487 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 03:44:28.124 -07 000000487 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 03:44:28.124 -07 000000462 INF: MeasureProfile done
17-03-18 03:44:28.124 -07 000000462 INF: X=16  Z correction [um]=0.0530179
17-03-18 03:44:28.124 -07 000000462 INF: Autofocus finished
17-03-18 03:44:28.324 -07 000000608 INF: FPGA: Recv FOCMRRIMG
17-03-18 03:44:28.324 -07 000000487 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 03:44:28.324 -07 000000610 INF: ------------ Scan Snapping tile 4 at Y-position 62.3955078125, Z-position -0.13861950819087. ----------
17-03-18 03:44:28.334 -07 000000610 INF: Cycle	116	Tile	4	Exposure Settings		A	410	G	197	T	197	C	410
17-03-18 03:44:28.334 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28803, sync = True, waitForSettling = True)
17-03-18 03:44:28.334 -07 000000610 INF: Z Motor: Moving to -0.131852 mm, started at -0.138620 mm, distance = 6.77 um
17-03-18 03:44:28.334 -07 000000610 INF: FPGA: Xmit ZDACW 28803\n [Z Motor]
17-03-18 03:44:28.344 -07 000000012 INF: FPGA: Recv ZDACW
17-03-18 03:44:28.344 -07 000000610 INF: FPGA: 'ZDACW 28803' command took 0 ms to send, 2 ms to get response, and 9 ms overall
17-03-18 03:44:28.344 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:44:28.344 -07 000000462 INF: FPGA: Recv ZDACR 28803
17-03-18 03:44:28.354 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 03:44:28.354 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 03:44:28.504 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:44:28.504 -07 000000012 INF: FPGA: Recv ZSGSRD 29813
17-03-18 03:44:28.514 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:44:28.514 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:44:28.514 -07 000000462 INF: FPGA: Recv ZSGSRD 29818
17-03-18 03:44:28.524 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:44:28.524 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:44:28.524 -07 000000012 INF: FPGA: Recv ZSGSRD 29815
17-03-18 03:44:28.534 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:44:28.534 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:44:28.534 -07 000000611 INF: FPGA: Recv ZSGSRD 29813
17-03-18 03:44:28.544 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:44:28.544 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:44:28.544 -07 000000012 INF: FPGA: Recv ZSGSRD 29818
17-03-18 03:44:28.554 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:44:28.554 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:44:28.554 -07 000000611 INF: FPGA: Recv ZSGSRD 29812
17-03-18 03:44:28.564 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:44:28.564 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:44:28.564 -07 000000487 INF: FPGA: Recv ZSGSRD 29815
17-03-18 03:44:28.574 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:44:28.574 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:44:28.574 -07 000000608 INF: FPGA: Recv ZSGSRD 29812
17-03-18 03:44:28.584 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:44:28.584 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:44:28.584 -07 000000382 INF: FPGA: Recv ZSGSRD 29813
17-03-18 03:44:28.594 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:44:28.594 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:44:28.594 -07 000000608 INF: FPGA: Recv ZSGSRD 29815
17-03-18 03:44:28.604 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:44:28.604 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:44:28.604 -07 000000487 INF: FPGA: Recv ZPIEZORD 25244
17-03-18 03:44:28.614 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:44:28.614 -07 000000610 INF: Z Motor: Piezo is near 33.9 V (nominally 0 to 100 V), expect near 44.0 V, since DAC is at 4.395 V. Piezo Error = -10.0 V.
17-03-18 03:44:28.614 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.9 um, Read 10 ADC samples: Avg = 29814 (-131.1 uncal um), Error = 0.8 uncal um, Median = 29814 (-131.1 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 29812 (-131.1 uncal um), Max = 29818 (-131.1 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 2 (0.0 uncal um)
17-03-18 03:44:28.614 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29814, posNoise = 4, negNoise = 2
17-03-18 03:44:28.614 -07 000000610 INF: Z Motor: After move to -0.131852, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:44:28.614 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 03:44:28.614 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:44:28.614 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:44:28.614 -07 000000012 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:44:28.614 -07 000000487 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 03:44:28.614 -07 000000487 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:44:28.614 -07 000000611 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 03:44:28.614 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 03:44:28.614 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:44:28.614 -07 000000487 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 03:44:28.614 -07 000000487 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 03:44:28.614 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 03:44:28.614 -07 000000611 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 03:44:28.624 -07 000000611 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 03:44:28.624 -07 000000611 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 03:44:28.624 -07 000000487 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 03:44:28.624 -07 000000487 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 03:44:28.634 -07 000000611 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 03:44:28.634 -07 000000611 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 03:44:28.634 -07 000000487 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 03:44:28.634 -07 000000487 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 03:44:28.634 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 410 410 197 197 28979 150\n [Camera]
17-03-18 03:44:28.844 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP turning red on 197
17-03-18 03:44:29.244 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 602
17-03-18 03:44:29.244 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 602
17-03-18 03:44:29.254 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:44:29.254 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 602
17-03-18 03:44:29.254 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 602
17-03-18 03:44:29.254 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:44:29.254 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:44:29.254 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 583729424, 0x0, 391868352) start.
17-03-18 03:44:29.254 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:44:29.254 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 03:44:29.444 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28979 798
17-03-18 03:44:29.594 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP turning grn on 945
17-03-18 03:44:29.654 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 583729424, 0x0, 391868352) end. Duration was 395 ms.
17-03-18 03:44:29.654 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 03:44:29.654 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:44:29.654 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:44:29.654 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 03:44:29.654 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 396 ms.
17-03-18 03:44:29.654 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 03:44:29.654 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:44:29.654 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:44:29.664 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-18 03:44:29.794 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1142
17-03-18 03:44:29.794 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1142
17-03-18 03:44:29.794 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:44:29.794 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1142
17-03-18 03:44:29.794 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1142
17-03-18 03:44:29.794 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:44:29.914 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:44:29.914 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 03:44:29.914 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:44:29.914 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2199785120, 0x0, 391868352) start.
17-03-18 03:44:29.984 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP 1334
17-03-18 03:44:29.984 -07 000000608 INF: FPGA: Recv CAMDBLSNAP
17-03-18 03:44:29.984 -07 000000610 INF: FPGA: 'CAMDBLSNAP 410 410 197 197 28979 150' command took 2 ms to send, 1331 ms to get response, and 1342 ms overall
17-03-18 03:44:29.984 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 03:44:29.984 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 5 at Y-position 62.3955078125, Z-Position -0.131854812805596. ------
17-03-18 03:44:29.984 -07 000000611 INF: Y Motor: MoveYZ optimized starting. Moving Y to 63.2326 mm, moving Z to -0.13850 mm
17-03-18 03:44:29.984 -07 000000611 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 03:44:29.984 -07 000000382 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 03:44:29.994 -07 000000581 INF: FPGA: Recv FOCMRRCUR 
17-03-18 03:44:29.994 -07 000000382 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 03:44:29.994 -07 000000487 INF: Z Motor: Entering MoveAbsStepped (DAC = 30256, sync = True, waitForSettling = False)
17-03-18 03:44:29.994 -07 000000487 INF: Z Motor: Moving to -0.138503 mm, started at -0.131855 mm, distance = -6.65 um
17-03-18 03:44:29.994 -07 000000608 INF: Y Motor: Entering MoveAbsStepped (target = 101172 steps, sync = True, waitForSettling = True)
17-03-18 03:44:29.994 -07 000000608 INF: Y Motor: Moving to 63.2326 mm, started at 62.3955 mm, delta = 0.8371 mm
17-03-18 03:44:29.994 -07 000000382 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 03:44:30.004 -07 000000487 INF: FPGA: Xmit ZDACW 30256\n [Z Motor]
17-03-18 03:44:30.004 -07 000000012 INF: FPGA: Recv ZDACW
17-03-18 03:44:30.014 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:44:30.014 -07 000000487 INF: FPGA: 'ZDACW 30256' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-18 03:44:30.014 -07 000000012 INF: FPGA: Recv YRDPOS 127786
17-03-18 03:44:30.024 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-18 03:44:30.024 -07 000000608 INF: Y Motor: Encoder = 127786 = motor step 99832.8 = 62.3955 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:44:30.024 -07 000000608 INF: Y Motor: Last commanded position = 62.4026 mm (99844.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 03:44:30.024 -07 000000608 INF: Y Motor: Moving 1339 steps-15
17-03-18 03:44:30.024 -07 000000487 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:44:30.024 -07 000000581 INF: FPGA: Recv ZDACR 30256
17-03-18 03:44:30.034 -07 000000487 INF: FPGA: 'ZDACR' command took 1 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 03:44:30.034 -07 000000487 INF: Z Motor: MoveAbsStepped took 37 ms (did NOT wait for settling yet))
17-03-18 03:44:30.034 -07 000000608 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 03:44:30.194 -07 000000581 INF: FPGA: Recv FOCMRRFOC
17-03-18 03:44:30.194 -07 000000382 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 195 ms to get response, and 203 ms overall
17-03-18 03:44:30.314 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 398 ms.
17-03-18 03:44:30.314 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 03:44:30.314 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:44:30.314 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2199785120, 0x0, 391868352) end. Duration was 397 ms.
17-03-18 03:44:30.314 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 03:44:30.314 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:44:30.314 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 03:44:30.314 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 03:44:30.314 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 525 ms.
17-03-18 03:44:30.324 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 528 ms.
17-03-18 03:44:30.404 -07 000000581 INF: FPGA: Recv YMVTILE
17-03-18 03:44:30.404 -07 000000608 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-18 03:44:30.454 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:44:30.454 -07 000000569 INF: FPGA: Recv YRDPOS 129483
17-03-18 03:44:30.464 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 03:44:30.464 -07 000000608 INF: Y Motor: Encoder = 129483 = motor step 101158.6 = 63.2241 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:44:30.464 -07 000000608 INF: Y Motor: Position error before settling (table move) = -17 encoder counts (-0.008 mm)
17-03-18 03:44:30.464 -07 000000608 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.837 mm, average velocity = 2.157 mm/sec
17-03-18 03:44:30.684 -07 000000382 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 116, FrontChillerTemperature: 3.994908,
17-03-18 03:44:31.414 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:44:31.414 -07 000000569 INF: FPGA: Recv YRDPOS 129483
17-03-18 03:44:31.424 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:44:31.424 -07 000000608 INF: Y Motor: Encoder = 129483 = motor step 101158.6 = 63.2241 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:44:31.444 -07 000000608 INF: Y Motor: After move to 63.232609, error = -0.008488, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 03:44:31.444 -07 000000608 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 03:44:31.444 -07 000000608 INF: Y Motor: Moved to 63.2241 after 1456 ms (table move)
17-03-18 03:44:31.454 -07 000000611 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138503 mm (DAC = 30256)
17-03-18 03:44:31.454 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:44:31.454 -07 000000608 INF: FPGA: Recv ZSGSRD 30853
17-03-18 03:44:31.464 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 03:44:31.464 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:44:31.464 -07 000000606 INF: FPGA: Recv ZSGSRD 30850
17-03-18 03:44:31.474 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:44:31.474 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:44:31.474 -07 000000606 INF: FPGA: Recv ZSGSRD 30849
17-03-18 03:44:31.484 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:44:31.484 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:44:31.484 -07 000000608 INF: FPGA: Recv ZSGSRD 30855
17-03-18 03:44:31.494 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:44:31.494 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:44:31.494 -07 000000608 INF: FPGA: Recv ZSGSRD 30854
17-03-18 03:44:31.504 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:44:31.504 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:44:31.504 -07 000000608 INF: FPGA: Recv ZSGSRD 30850
17-03-18 03:44:31.514 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:44:31.514 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:44:31.514 -07 000000474 INF: FPGA: Recv ZSGSRD 30852
17-03-18 03:44:31.524 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:44:31.524 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:44:31.524 -07 000000474 INF: FPGA: Recv ZSGSRD 30848
17-03-18 03:44:31.534 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:44:31.534 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:44:31.534 -07 000000474 INF: FPGA: Recv ZSGSRD 30851
17-03-18 03:44:31.544 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:44:31.544 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:44:31.544 -07 000000437 INF: FPGA: Recv ZSGSRD 30844
17-03-18 03:44:31.554 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 03:44:31.554 -07 000000611 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:44:31.554 -07 000000569 INF: FPGA: Recv ZPIEZORD 26652
17-03-18 03:44:31.564 -07 000000611 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:44:31.564 -07 000000611 INF: Z Motor: Piezo is near 36.9 V (nominally 0 to 100 V), expect near 46.2 V, since DAC is at 4.617 V. Piezo Error = -9.2 V.
17-03-18 03:44:31.564 -07 000000611 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.5 um, Read 10 ADC samples: Avg = 30851 (-137.7 uncal um), Error = 0.8 uncal um, Median = 30850 (-137.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 30844 (-137.7 uncal um), Max = 30855 (-137.7 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 03:44:31.564 -07 000000611 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30851, posNoise = 4, negNoise = 7
17-03-18 03:44:31.564 -07 000000611 INF: Z Motor: After move to -0.138503, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:44:31.564 -07 000000611 INF: Z Motor: Settle wait time = 1460 ms, measure time = 108 ms (allowed 150 ms), total time = 1568 ms
17-03-18 03:44:31.564 -07 000000611 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-18 03:44:31.604 -07 000000608 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 03:44:31.604 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 115. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1671, R2=1741, Total=3412. Warn if over 250 bubbles per interval.
17-03-18 03:44:31.614 -07 000000611 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1621 ms
17-03-18 03:44:31.614 -07 000000611 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 03:44:31.614 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:44:31.614 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:44:31.614 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:44:31.614 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:44:31.614 -07 000000606 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 03:44:31.614 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:44:31.614 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 03:44:31.614 -07 000000606 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 03:44:31.614 -07 000000606 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 03:44:31.624 -07 000000606 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 03:44:31.634 -07 000000606 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 14 ms.
17-03-18 03:44:31.634 -07 000000606 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms.
17-03-18 03:44:31.634 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 03:44:31.684 -07 000000487 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 03:44:31.984 -07 000000608 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 03:44:31.984 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 03:44:31.984 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 03:44:31.984 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 596199184, 0x0, 559484976) start.
17-03-18 03:44:32.024 -07 000000437 INF: FPGA: Recv @CAMSNAP 380
17-03-18 03:44:32.024 -07 000000581 INF: FPGA: Recv CAMSNAP
17-03-18 03:44:32.024 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 385 ms to get response, and 387 ms overall
17-03-18 03:44:32.104 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 596199184, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 03:44:32.104 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:44:32.104 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 03:44:32.104 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 03:44:32.124 -07 000000382 INF: Autofocus start
17-03-18 03:44:32.124 -07 000000382 INF: MeasureProfile start
17-03-18 03:44:32.124 -07 000000462 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 03:44:32.124 -07 000000487 INF: FPGA: Recv FOCMRRCUR 
17-03-18 03:44:32.134 -07 000000462 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 03:44:32.134 -07 000000462 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 03:44:32.134 -07 000000382 INF: MeasureProfile done
17-03-18 03:44:32.134 -07 000000382 INF: X=16  Z correction [um]=0.0530179
17-03-18 03:44:32.134 -07 000000382 INF: Autofocus finished
17-03-18 03:44:32.334 -07 000000569 INF: FPGA: Recv FOCMRRIMG
17-03-18 03:44:32.334 -07 000000462 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 196 ms to get response, and 203 ms overall
17-03-18 03:44:32.344 -07 000000610 INF: ------------ Scan Snapping tile 5 at Y-position 63.22412109375, Z-position -0.138516720796602. ----------
17-03-18 03:44:32.344 -07 000000610 INF: Cycle	116	Tile	5	Exposure Settings		A	410	G	197	T	197	C	410
17-03-18 03:44:32.344 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28780, sync = True, waitForSettling = True)
17-03-18 03:44:32.344 -07 000000610 INF: Z Motor: Moving to -0.131746 mm, started at -0.138517 mm, distance = 6.77 um
17-03-18 03:44:32.344 -07 000000610 INF: FPGA: Xmit ZDACW 28780\n [Z Motor]
17-03-18 03:44:32.354 -07 000000437 INF: FPGA: Recv ZDACW
17-03-18 03:44:32.354 -07 000000610 INF: FPGA: 'ZDACW 28780' command took 0 ms to send, 2 ms to get response, and 2 ms overall
17-03-18 03:44:32.354 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:44:32.354 -07 000000611 INF: FPGA: Recv ZDACR 28780
17-03-18 03:44:32.364 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 03:44:32.364 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 03:44:32.514 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:44:32.514 -07 000000462 INF: FPGA: Recv ZSGSRD 29798
17-03-18 03:44:32.524 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:44:32.524 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:44:32.524 -07 000000455 INF: FPGA: Recv ZSGSRD 29797
17-03-18 03:44:32.534 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:44:32.534 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:44:32.534 -07 000000437 INF: FPGA: Recv ZSGSRD 29794
17-03-18 03:44:32.544 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:44:32.544 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:44:32.544 -07 000000382 INF: FPGA: Recv ZSGSRD 29791
17-03-18 03:44:32.554 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:44:32.554 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:44:32.554 -07 000000437 INF: FPGA: Recv ZSGSRD 29800
17-03-18 03:44:32.564 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:44:32.564 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:44:32.564 -07 000000455 INF: FPGA: Recv ZSGSRD 29799
17-03-18 03:44:32.574 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:44:32.574 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:44:32.574 -07 000000455 INF: FPGA: Recv ZSGSRD 29800
17-03-18 03:44:32.584 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:44:32.584 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:44:32.584 -07 000000382 INF: FPGA: Recv ZSGSRD 29796
17-03-18 03:44:32.594 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:44:32.594 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:44:32.594 -07 000000474 INF: FPGA: Recv ZSGSRD 29799
17-03-18 03:44:32.604 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:44:32.604 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:44:32.604 -07 000000474 INF: FPGA: Recv ZSGSRD 29795
17-03-18 03:44:32.614 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:44:32.614 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:44:32.614 -07 000000455 INF: FPGA: Recv ZPIEZORD 25287
17-03-18 03:44:32.624 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:44:32.624 -07 000000610 INF: Z Motor: Piezo is near 34.0 V (nominally 0 to 100 V), expect near 43.9 V, since DAC is at 4.392 V. Piezo Error = -9.9 V.
17-03-18 03:44:32.624 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.7 um, Read 10 ADC samples: Avg = 29797 (-131.0 uncal um), Error = 0.8 uncal um, Median = 29798 (-131.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29791 (-130.9 uncal um), Max = 29800 (-131.0 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 03:44:32.624 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29797, posNoise = 3, negNoise = 6
17-03-18 03:44:32.624 -07 000000610 INF: Z Motor: After move to -0.131746, error = 0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:44:32.624 -07 000000610 INF: Z Motor: MoveAbsStepped took 271 ms)
17-03-18 03:44:32.624 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:44:32.624 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:44:32.624 -07 000000437 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:44:32.624 -07 000000455 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:44:32.624 -07 000000474 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 03:44:32.624 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 03:44:32.624 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 03:44:32.624 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:44:32.624 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 03:44:32.624 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 03:44:32.624 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 03:44:32.624 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 03:44:32.624 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 03:44:32.624 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 03:44:32.634 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 03:44:32.634 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 03:44:32.634 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 03:44:32.634 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 03:44:32.644 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 03:44:32.644 -07 000000474 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 03:44:32.644 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 410 410 197 197 28957 150\n [Camera]
17-03-18 03:44:32.844 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP turning red on 196
17-03-18 03:44:33.254 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 602
17-03-18 03:44:33.254 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 602
17-03-18 03:44:33.254 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:44:33.254 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 602
17-03-18 03:44:33.254 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 602
17-03-18 03:44:33.254 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:44:33.254 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:44:33.254 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start.
17-03-18 03:44:33.254 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:44:33.254 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-18 03:44:33.444 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28957 796
17-03-18 03:44:33.594 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP turning grn on 945
17-03-18 03:44:33.634 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 374 ms.
17-03-18 03:44:33.634 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 374 ms.
17-03-18 03:44:33.634 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:44:33.634 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 378 ms.
17-03-18 03:44:33.634 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-18 03:44:33.634 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:44:33.634 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:44:33.634 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-18 03:44:33.634 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:44:33.644 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-18 03:44:33.794 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1142
17-03-18 03:44:33.794 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1142
17-03-18 03:44:33.794 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:44:33.794 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:44:33.794 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) start.
17-03-18 03:44:33.794 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1142
17-03-18 03:44:33.794 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1142
17-03-18 03:44:33.794 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:44:33.794 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:44:33.794 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 03:44:33.984 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP 1335
17-03-18 03:44:33.984 -07 000000479 INF: FPGA: Recv CAMDBLSNAP
17-03-18 03:44:33.984 -07 000000610 INF: FPGA: 'CAMDBLSNAP 410 410 197 197 28957 150' command took 2 ms to send, 1334 ms to get response, and 1342 ms overall
17-03-18 03:44:33.984 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 03:44:33.984 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 6 at Y-position 63.22412109375, Z-Position -0.131745601199186. ------
17-03-18 03:44:33.984 -07 000000437 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 03:44:33.984 -07 000000579 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.0626 mm, moving Z to -0.13817 mm
17-03-18 03:44:33.984 -07 000000579 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 03:44:33.994 -07 000000512 INF: FPGA: Recv FOCMRRCUR 
17-03-18 03:44:33.994 -07 000000437 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 03:44:33.994 -07 000000437 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 03:44:33.994 -07 000000625 INF: Z Motor: Entering MoveAbsStepped (DAC = 30184, sync = True, waitForSettling = False)
17-03-18 03:44:33.994 -07 000000625 INF: Z Motor: Moving to -0.138173 mm, started at -0.131746 mm, distance = -6.43 um
17-03-18 03:44:33.994 -07 000000479 INF: Y Motor: Entering MoveAbsStepped (target = 102500 steps, sync = True, waitForSettling = True)
17-03-18 03:44:33.994 -07 000000479 INF: Y Motor: Moving to 64.0626 mm, started at 63.2241 mm, delta = 0.8385 mm
17-03-18 03:44:34.004 -07 000000479 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:44:34.004 -07 000000467 INF: FPGA: Recv YRDPOS 129483
17-03-18 03:44:34.014 -07 000000479 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-18 03:44:34.014 -07 000000479 INF: Y Motor: Encoder = 129483 = motor step 101158.6 = 63.2241 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:44:34.014 -07 000000479 INF: Y Motor: Last commanded position = 63.2326 mm (101172.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 03:44:34.014 -07 000000479 INF: Y Motor: Moving 1342 steps-17
17-03-18 03:44:34.014 -07 000000625 INF: FPGA: Xmit ZDACW 30184\n [Z Motor]
17-03-18 03:44:34.014 -07 000000512 INF: FPGA: Recv ZDACW
17-03-18 03:44:34.024 -07 000000625 INF: FPGA: 'ZDACW 30184' command took 1 ms to send, 0 ms to get response, and 26 ms overall
17-03-18 03:44:34.024 -07 000000479 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 03:44:34.034 -07 000000625 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:44:34.034 -07 000000512 INF: FPGA: Recv ZDACR 30184
17-03-18 03:44:34.044 -07 000000625 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 20 ms overall
17-03-18 03:44:34.044 -07 000000625 INF: Z Motor: MoveAbsStepped took 46 ms (did NOT wait for settling yet))
17-03-18 03:44:34.194 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) end. Duration was 399 ms.
17-03-18 03:44:34.194 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 03:44:34.194 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:44:34.194 -07 000000462 INF: FPGA: Recv FOCMRRFOC
17-03-18 03:44:34.194 -07 000000437 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 196 ms to get response, and 202 ms overall
17-03-18 03:44:34.194 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 399 ms.
17-03-18 03:44:34.194 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 03:44:34.194 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:44:34.204 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 03:44:34.204 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-18 03:44:34.204 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 408 ms.
17-03-18 03:44:34.204 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-18 03:44:34.394 -07 000000625 INF: FPGA: Recv YMVTILE
17-03-18 03:44:34.394 -07 000000479 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-18 03:44:34.444 -07 000000479 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:44:34.444 -07 000000437 INF: FPGA: Recv YRDPOS 131189
17-03-18 03:44:34.454 -07 000000479 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 03:44:34.454 -07 000000479 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:44:34.454 -07 000000479 INF: Y Motor: Position error before settling (table move) = -11 encoder counts (-0.005 mm)
17-03-18 03:44:34.454 -07 000000479 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.838 mm, average velocity = 2.161 mm/sec
17-03-18 03:44:35.404 -07 000000479 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:44:35.404 -07 000000487 INF: FPGA: Recv YRDPOS 131189
17-03-18 03:44:35.414 -07 000000479 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:44:35.414 -07 000000479 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:44:35.434 -07 000000479 INF: Y Motor: After move to 64.062607, error = -0.005478, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 03:44:35.434 -07 000000479 INF: Y Motor: Position error after settling (table move) = -11 encoder counts (-0.005 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 03:44:35.434 -07 000000479 INF: Y Motor: Moved to 64.0571 after 1441 ms (table move)
17-03-18 03:44:35.434 -07 000000579 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138173 mm (DAC = 30184)
17-03-18 03:44:35.434 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:44:35.444 -07 000000455 INF: FPGA: Recv ZSGSRD 30792
17-03-18 03:44:35.444 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 5 ms to get response, and 5 ms overall
17-03-18 03:44:35.444 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:44:35.444 -07 000000467 INF: FPGA: Recv ZSGSRD 30800
17-03-18 03:44:35.454 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 03:44:35.454 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:44:35.454 -07 000000467 INF: FPGA: Recv ZSGSRD 30801
17-03-18 03:44:35.464 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:44:35.464 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:44:35.464 -07 000000625 INF: FPGA: Recv ZSGSRD 30802
17-03-18 03:44:35.474 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:44:35.474 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:44:35.474 -07 000000382 INF: FPGA: Recv ZSGSRD 30797
17-03-18 03:44:35.484 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:44:35.484 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:44:35.484 -07 000000467 INF: FPGA: Recv ZSGSRD 30805
17-03-18 03:44:35.494 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:44:35.494 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:44:35.494 -07 000000467 INF: FPGA: Recv ZSGSRD 30799
17-03-18 03:44:35.504 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:44:35.504 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:44:35.504 -07 000000437 INF: FPGA: Recv ZSGSRD 30795
17-03-18 03:44:35.514 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:44:35.514 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:44:35.514 -07 000000625 INF: FPGA: Recv ZSGSRD 30795
17-03-18 03:44:35.524 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:44:35.524 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:44:35.524 -07 000000625 INF: FPGA: Recv ZSGSRD 30798
17-03-18 03:44:35.534 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:44:35.534 -07 000000579 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:44:35.534 -07 000000625 INF: FPGA: Recv ZPIEZORD 26634
17-03-18 03:44:35.544 -07 000000579 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:44:35.544 -07 000000579 INF: Z Motor: Piezo is near 36.9 V (nominally 0 to 100 V), expect near 46.1 V, since DAC is at 4.606 V. Piezo Error = -9.2 V.
17-03-18 03:44:35.544 -07 000000579 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.2 um, Read 10 ADC samples: Avg = 30798 (-137.4 uncal um), Error = 0.8 uncal um, Median = 30798 (-137.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 30792 (-137.3 uncal um), Max = 30805 (-137.4 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 03:44:35.544 -07 000000579 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30798, posNoise = 7, negNoise = 6
17-03-18 03:44:35.544 -07 000000579 INF: Z Motor: After move to -0.138173, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:44:35.544 -07 000000579 INF: Z Motor: Settle wait time = 1445 ms, measure time = 102 ms (allowed 150 ms), total time = 1547 ms
17-03-18 03:44:35.544 -07 000000579 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-18 03:44:35.594 -07 000000579 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1600 ms
17-03-18 03:44:35.594 -07 000000579 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 03:44:35.594 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:44:35.594 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:44:35.594 -07 000000382 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 03:44:35.594 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:44:35.594 -07 000000437 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:44:35.594 -07 000000455 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:44:35.594 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 03:44:35.594 -07 000000382 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 03:44:35.604 -07 000000382 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 03:44:35.604 -07 000000382 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 03:44:35.604 -07 000000382 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 03:44:35.604 -07 000000382 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 03:44:35.614 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 03:44:35.654 -07 000000474 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 03:44:35.954 -07 000000455 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 03:44:35.954 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 03:44:35.954 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 03:44:35.954 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 615280568, 0x0, 559484976) start.
17-03-18 03:44:35.994 -07 000000467 INF: FPGA: Recv @CAMSNAP 380
17-03-18 03:44:35.994 -07 000000437 INF: FPGA: Recv CAMSNAP
17-03-18 03:44:35.994 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 03:44:36.044 -07 000000467 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 116, FrontChillerTemperature: 3.974486,
17-03-18 03:44:36.074 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 615280568, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 03:44:36.074 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:44:36.074 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-18 03:44:36.074 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-18 03:44:36.094 -07 000000437 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 03:44:36.094 -07 000000512 INF: Autofocus start
17-03-18 03:44:36.094 -07 000000512 INF: MeasureProfile start
17-03-18 03:44:36.094 -07 000000462 INF: FPGA: Recv FOCMRRCUR 
17-03-18 03:44:36.104 -07 000000437 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 03:44:36.104 -07 000000437 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 03:44:36.104 -07 000000512 INF: MeasureProfile done
17-03-18 03:44:36.104 -07 000000512 INF: X=-64  Z correction [um]=-0.3149434
17-03-18 03:44:36.104 -07 000000512 INF: Autofocus finished
17-03-18 03:44:36.304 -07 000000462 INF: FPGA: Recv FOCMRRIMG
17-03-18 03:44:36.304 -07 000000437 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 03:44:36.304 -07 000000610 INF: ------------ Scan Snapping tile 6 at Y-position 64.05712890625, Z-position -0.138176237553089. ----------
17-03-18 03:44:36.304 -07 000000610 INF: Cycle	116	Tile	6	Exposure Settings		A	410	G	197	T	197	C	410
17-03-18 03:44:36.314 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28628, sync = True, waitForSettling = True)
17-03-18 03:44:36.314 -07 000000610 INF: Z Motor: Moving to -0.131051 mm, started at -0.138176 mm, distance = 7.13 um
17-03-18 03:44:36.314 -07 000000610 INF: FPGA: Xmit ZDACW 28628\n [Z Motor]
17-03-18 03:44:36.314 -07 000000437 INF: FPGA: Recv ZDACW
17-03-18 03:44:36.324 -07 000000610 INF: FPGA: 'ZDACW 28628' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 03:44:36.324 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:44:36.324 -07 000000579 INF: FPGA: Recv ZDACR 28628
17-03-18 03:44:36.334 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:44:36.334 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 03:44:36.484 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:44:36.484 -07 000000579 INF: FPGA: Recv ZSGSRD 29696
17-03-18 03:44:36.494 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:44:36.494 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:44:36.494 -07 000000625 INF: FPGA: Recv ZSGSRD 29691
17-03-18 03:44:36.504 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:44:36.504 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:44:36.504 -07 000000579 INF: FPGA: Recv ZSGSRD 29686
17-03-18 03:44:36.514 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:44:36.514 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:44:36.514 -07 000000625 INF: FPGA: Recv ZSGSRD 29693
17-03-18 03:44:36.524 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:44:36.524 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:44:36.524 -07 000000480 INF: FPGA: Recv ZSGSRD 29686
17-03-18 03:44:36.534 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:44:36.534 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:44:36.534 -07 000000480 INF: FPGA: Recv ZSGSRD 29692
17-03-18 03:44:36.544 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:44:36.544 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:44:36.544 -07 000000512 INF: FPGA: Recv ZSGSRD 29687
17-03-18 03:44:36.554 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:44:36.554 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:44:36.554 -07 000000625 INF: FPGA: Recv ZSGSRD 29693
17-03-18 03:44:36.564 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:44:36.564 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:44:36.564 -07 000000480 INF: FPGA: Recv ZSGSRD 29693
17-03-18 03:44:36.574 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:44:36.574 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:44:36.574 -07 000000512 INF: FPGA: Recv ZSGSRD 29684
17-03-18 03:44:36.584 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:44:36.584 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:44:36.584 -07 000000480 INF: FPGA: Recv ZPIEZORD 25186
17-03-18 03:44:36.594 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:44:36.594 -07 000000610 INF: Z Motor: Piezo is near 33.8 V (nominally 0 to 100 V), expect near 43.7 V, since DAC is at 4.368 V. Piezo Error = -9.9 V.
17-03-18 03:44:36.594 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.1 um, Read 10 ADC samples: Avg = 29690 (-130.3 uncal um), Error = 0.8 uncal um, Median = 29692 (-130.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29684 (-130.2 uncal um), Max = 29696 (-130.3 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 03:44:36.594 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29690, posNoise = 6, negNoise = 6
17-03-18 03:44:36.594 -07 000000610 INF: Z Motor: After move to -0.131051, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:44:36.594 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 03:44:36.594 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:44:36.594 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:44:36.594 -07 000000625 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:44:36.594 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:44:36.594 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 03:44:36.594 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:44:36.594 -07 000000625 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 03:44:36.594 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 03:44:36.594 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 03:44:36.594 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 03:44:36.594 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 03:44:36.594 -07 000000625 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 03:44:36.604 -07 000000480 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 03:44:36.604 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-18 03:44:36.604 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 03:44:36.604 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 115. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1671, R2=1741, Total=3412. Warn if over 250 bubbles per interval.
17-03-18 03:44:36.604 -07 000000625 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-18 03:44:36.604 -07 000000625 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 03:44:36.614 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-18 03:44:36.614 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 03:44:36.614 -07 000000625 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 03:44:36.614 -07 000000625 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 03:44:36.614 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 410 410 197 197 28804 150\n [Camera]
17-03-18 03:44:36.814 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 03:44:37.224 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 602
17-03-18 03:44:37.224 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 602
17-03-18 03:44:37.224 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 602
17-03-18 03:44:37.224 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:44:37.224 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:44:37.234 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-18 03:44:37.234 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 602
17-03-18 03:44:37.234 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:44:37.234 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:44:37.234 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-18 03:44:37.414 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28804 795
17-03-18 03:44:37.564 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning grn on 945
17-03-18 03:44:37.624 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 390 ms.
17-03-18 03:44:37.624 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-18 03:44:37.624 -07 000000625 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:44:37.624 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 389 ms.
17-03-18 03:44:37.624 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-18 03:44:37.624 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:44:37.624 -07 000000625 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 03:44:37.624 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 03:44:37.624 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 03:44:37.634 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 03:44:37.764 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1142
17-03-18 03:44:37.764 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1142
17-03-18 03:44:37.764 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:44:37.764 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:44:37.764 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-18 03:44:37.764 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1142
17-03-18 03:44:37.764 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1142
17-03-18 03:44:37.774 -07 000000625 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:44:37.774 -07 000000625 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:44:37.774 -07 000000625 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) start.
17-03-18 03:44:37.954 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP 1335
17-03-18 03:44:37.954 -07 000000480 INF: FPGA: Recv CAMDBLSNAP
17-03-18 03:44:37.954 -07 000000610 INF: FPGA: 'CAMDBLSNAP 410 410 197 197 28804 150' command took 2 ms to send, 1338 ms to get response, and 1342 ms overall
17-03-18 03:44:37.964 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 03:44:37.964 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 7 at Y-position 64.05712890625, Z-Position -0.131058210500018. ------
17-03-18 03:44:37.964 -07 000000480 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 03:44:38.174 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 406 ms.
17-03-18 03:44:38.174 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-18 03:44:38.174 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:44:38.174 -07 000000625 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) end. Duration was 406 ms.
17-03-18 03:44:38.174 -07 000000625 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 406 ms.
17-03-18 03:44:38.174 -07 000000625 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:44:38.184 -07 000000625 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:44:38.184 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 03:44:38.184 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 414 ms.
17-03-18 03:44:38.184 -07 000000625 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 417 ms.
17-03-18 03:44:38.194 -07 000000512 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.8926 mm, moving Z to -0.13766 mm
17-03-18 03:44:38.194 -07 000000512 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 03:44:38.194 -07 000000625 INF: FPGA: Recv FOCMRRCUR 
17-03-18 03:44:38.194 -07 000000480 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 226 ms to get response, and 232 ms overall
17-03-18 03:44:38.194 -07 000000480 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 03:44:38.194 -07 000000625 INF: Y Motor: Entering MoveAbsStepped (target = 103828 steps, sync = True, waitForSettling = True)
17-03-18 03:44:38.194 -07 000000625 INF: Y Motor: Moving to 64.8926 mm, started at 64.0571 mm, delta = 0.8355 mm
17-03-18 03:44:38.204 -07 000000625 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:44:39.064 -07 000000608 INF: FPGA: Recv YRDPOS 131189
17-03-18 03:44:39.064 -07 000000608 INF: FPGA: Recv FOCMRRFOC
17-03-18 03:44:39.064 -07 000000625 INF: FPGA: 'YRDPOS' command took 0 ms to send, 855 ms to get response, and 867 ms overall
17-03-18 03:44:39.064 -07 000000625 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:44:39.064 -07 000000625 INF: Y Motor: Last commanded position = 64.0626 mm (102500.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 03:44:39.064 -07 000000625 INF: Y Motor: Moving 1337 steps-11
17-03-18 03:44:39.064 -07 000000606 INF: Z Motor: Entering MoveAbsStepped (DAC = 30072, sync = True, waitForSettling = False)
17-03-18 03:44:39.064 -07 000000606 INF: Z Motor: Moving to -0.137661 mm, started at -0.131058 mm, distance = -6.60 um
17-03-18 03:44:39.064 -07 000000625 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 03:44:39.064 -07 000000480 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 865 ms to get response, and 868 ms overall
17-03-18 03:44:39.074 -07 000000606 INF: FPGA: Xmit ZDACW 30072\n [Z Motor]
17-03-18 03:44:39.074 -07 000000480 INF: FPGA: Recv ZDACW
17-03-18 03:44:39.084 -07 000000606 INF: FPGA: 'ZDACW 30072' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-18 03:44:39.084 -07 000000606 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:44:39.084 -07 000000608 INF: FPGA: Recv ZDACR 30072
17-03-18 03:44:39.094 -07 000000606 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:44:39.094 -07 000000606 INF: Z Motor: MoveAbsStepped took 23 ms (did NOT wait for settling yet))
17-03-18 03:44:39.444 -07 000000480 INF: FPGA: Recv YMVTILE
17-03-18 03:44:39.444 -07 000000625 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 375 ms to get response, and 379 ms overall
17-03-18 03:44:39.494 -07 000000625 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:44:39.494 -07 000000480 INF: FPGA: Recv YRDPOS 132872
17-03-18 03:44:39.504 -07 000000625 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 03:44:39.504 -07 000000625 INF: Y Motor: Encoder = 132872 = motor step 103806.3 = 64.8789 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:44:39.504 -07 000000625 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-18 03:44:39.504 -07 000000625 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 379 ms, distance = 0.835 mm, average velocity = 2.204 mm/sec
17-03-18 03:44:40.454 -07 000000625 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:44:40.454 -07 000000455 INF: FPGA: Recv YRDPOS 132872
17-03-18 03:44:40.464 -07 000000625 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:44:40.464 -07 000000625 INF: Y Motor: Encoder = 132872 = motor step 103806.3 = 64.8789 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:44:40.494 -07 000000625 INF: Y Motor: After move to 64.892609, error = -0.013702, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 03:44:40.494 -07 000000625 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 03:44:40.494 -07 000000625 INF: Y Motor: Moved to 64.8789 after 2293 ms (table move)
17-03-18 03:44:40.494 -07 000000512 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137661 mm (DAC = 30072)
17-03-18 03:44:40.494 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:44:40.494 -07 000000012 INF: FPGA: Recv ZSGSRD 30729
17-03-18 03:44:40.504 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 03:44:40.504 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:44:40.504 -07 000000455 INF: FPGA: Recv ZSGSRD 30727
17-03-18 03:44:40.514 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:44:40.514 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:44:40.514 -07 000000561 INF: FPGA: Recv ZSGSRD 30721
17-03-18 03:44:40.524 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:44:40.524 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:44:40.524 -07 000000474 INF: FPGA: Recv ZSGSRD 30712
17-03-18 03:44:40.534 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:44:40.534 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:44:40.534 -07 000000462 INF: FPGA: Recv ZSGSRD 30712
17-03-18 03:44:40.544 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:44:40.544 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:44:40.544 -07 000000611 INF: FPGA: Recv ZSGSRD 30720
17-03-18 03:44:40.554 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:44:40.554 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:44:40.554 -07 000000487 INF: FPGA: Recv ZSGSRD 30719
17-03-18 03:44:40.564 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:44:40.564 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:44:40.564 -07 000000462 INF: FPGA: Recv ZSGSRD 30720
17-03-18 03:44:40.574 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:44:40.574 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:44:40.574 -07 000000479 INF: FPGA: Recv ZSGSRD 30720
17-03-18 03:44:40.584 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:44:40.584 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:44:40.584 -07 000000012 INF: FPGA: Recv ZSGSRD 30726
17-03-18 03:44:40.594 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:44:40.594 -07 000000512 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:44:40.594 -07 000000462 INF: FPGA: Recv ZPIEZORD 26560
17-03-18 03:44:40.604 -07 000000512 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:44:40.604 -07 000000512 INF: Z Motor: Piezo is near 36.7 V (nominally 0 to 100 V), expect near 45.9 V, since DAC is at 4.589 V. Piezo Error = -9.1 V.
17-03-18 03:44:40.604 -07 000000512 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.7 um, Read 10 ADC samples: Avg = 30721 (-136.9 uncal um), Error = 0.8 uncal um, Median = 30720 (-136.9 uncal um), StdDev = 6 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 30712 (-136.8 uncal um), Max = 30729 (-136.9 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-18 03:44:40.604 -07 000000512 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30721, posNoise = 8, negNoise = 9
17-03-18 03:44:40.604 -07 000000512 INF: Z Motor: After move to -0.137661, error = -0.000021, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:44:40.604 -07 000000512 INF: Z Motor: Settle wait time = 1429 ms, measure time = 105 ms (allowed 150 ms), total time = 1534 ms
17-03-18 03:44:40.604 -07 000000512 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 03:44:40.654 -07 000000512 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2456 ms
17-03-18 03:44:40.654 -07 000000512 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 03:44:40.654 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:44:40.654 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:44:40.654 -07 000000625 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:44:40.654 -07 000000479 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:44:40.654 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 03:44:40.654 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:44:40.664 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 03:44:40.664 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 03:44:40.664 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 03:44:40.664 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 03:44:40.664 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 03:44:40.674 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-18 03:44:40.674 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 03:44:40.714 -07 000000512 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 03:44:41.014 -07 000000625 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 03:44:41.014 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 03:44:41.014 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 03:44:41.014 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 677954600, 0x0, 559484976) start.
17-03-18 03:44:41.054 -07 000000487 INF: FPGA: Recv @CAMSNAP 380
17-03-18 03:44:41.054 -07 000000487 INF: FPGA: Recv CAMSNAP
17-03-18 03:44:41.054 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 379 ms to get response, and 386 ms overall
17-03-18 03:44:41.144 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 677954600, 0x0, 559484976) end. Duration was 124 ms.
17-03-18 03:44:41.144 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:44:41.144 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 03:44:41.144 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 126 ms.
17-03-18 03:44:41.154 -07 000000608 INF: Autofocus start
17-03-18 03:44:41.154 -07 000000608 INF: MeasureProfile start
17-03-18 03:44:41.154 -07 000000606 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 03:44:41.164 -07 000000561 INF: FPGA: Recv FOCMRRCUR 
17-03-18 03:44:41.164 -07 000000606 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 03:44:41.164 -07 000000606 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 03:44:41.174 -07 000000608 INF: MeasureProfile done
17-03-18 03:44:41.174 -07 000000608 INF: X=0  Z correction [um]=-0.02394831
17-03-18 03:44:41.174 -07 000000608 INF: Autofocus finished
17-03-18 03:44:41.364 -07 000000625 INF: FPGA: Recv FOCMRRIMG
17-03-18 03:44:41.364 -07 000000606 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 195 ms to get response, and 205 ms overall
17-03-18 03:44:41.364 -07 000000610 INF: ------------ Scan Snapping tile 7 at Y-position 64.87890625, Z-position -0.137681573218173. ----------
17-03-18 03:44:41.374 -07 000000610 INF: Cycle	116	Tile	7	Exposure Settings		A	410	G	197	T	197	C	410
17-03-18 03:44:41.374 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28579, sync = True, waitForSettling = True)
17-03-18 03:44:41.374 -07 000000610 INF: Z Motor: Moving to -0.130826 mm, started at -0.137682 mm, distance = 6.86 um
17-03-18 03:44:41.374 -07 000000610 INF: FPGA: Xmit ZDACW 28579\n [Z Motor]
17-03-18 03:44:41.374 -07 000000581 INF: FPGA: Recv ZDACW
17-03-18 03:44:41.384 -07 000000610 INF: FPGA: 'ZDACW 28579' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 03:44:41.384 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:44:41.384 -07 000000462 INF: FPGA: Recv ZDACR 28579
17-03-18 03:44:41.394 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:44:41.394 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 03:44:41.404 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 116, FrontChillerTemperature: 3.960826,
17-03-18 03:44:41.544 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:44:41.544 -07 000000479 INF: FPGA: Recv ZSGSRD 29651
17-03-18 03:44:41.554 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:44:41.554 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:44:41.554 -07 000000479 INF: FPGA: Recv ZSGSRD 29657
17-03-18 03:44:41.564 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:44:41.564 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:44:41.564 -07 000000611 INF: FPGA: Recv ZSGSRD 29657
17-03-18 03:44:41.574 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:44:41.574 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:44:41.574 -07 000000611 INF: FPGA: Recv ZSGSRD 29657
17-03-18 03:44:41.584 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:44:41.584 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:44:41.584 -07 000000479 INF: FPGA: Recv ZSGSRD 29651
17-03-18 03:44:41.594 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:44:41.594 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:44:41.594 -07 000000479 INF: FPGA: Recv ZSGSRD 29650
17-03-18 03:44:41.604 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:44:41.604 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:44:41.604 -07 000000625 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 03:44:41.604 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 115. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1671, R2=1741, Total=3412. Warn if over 250 bubbles per interval.
17-03-18 03:44:41.604 -07 000000479 INF: FPGA: Recv ZSGSRD 29659
17-03-18 03:44:41.614 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:44:41.614 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:44:41.614 -07 000000479 INF: FPGA: Recv ZSGSRD 29657
17-03-18 03:44:41.624 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:44:41.624 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:44:41.624 -07 000000611 INF: FPGA: Recv ZSGSRD 29657
17-03-18 03:44:41.634 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 03:44:41.634 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:44:41.634 -07 000000479 INF: FPGA: Recv ZSGSRD 29653
17-03-18 03:44:41.644 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:44:41.644 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:44:41.644 -07 000000611 INF: FPGA: Recv ZPIEZORD 25114
17-03-18 03:44:41.654 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:44:41.654 -07 000000610 INF: Z Motor: Piezo is near 33.7 V (nominally 0 to 100 V), expect near 43.6 V, since DAC is at 4.361 V. Piezo Error = -10.0 V.
17-03-18 03:44:41.654 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.8 um, Read 10 ADC samples: Avg = 29655 (-130.1 uncal um), Error = 0.8 uncal um, Median = 29657 (-130.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29650 (-130.0 uncal um), Max = 29659 (-130.1 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 03:44:41.654 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29655, posNoise = 4, negNoise = 5
17-03-18 03:44:41.654 -07 000000610 INF: Z Motor: After move to -0.130826, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:44:41.654 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 03:44:41.654 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:44:41.654 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:44:41.654 -07 000000479 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:44:41.654 -07 000000625 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:44:41.654 -07 000000611 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 03:44:41.654 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:44:41.654 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 03:44:41.654 -07 000000611 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 03:44:41.654 -07 000000479 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 03:44:41.654 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 03:44:41.654 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 03:44:41.654 -07 000000479 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 03:44:41.654 -07 000000611 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 03:44:41.654 -07 000000611 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 03:44:41.654 -07 000000479 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 03:44:41.654 -07 000000479 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 03:44:41.674 -07 000000611 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 03:44:41.674 -07 000000611 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 03:44:41.674 -07 000000479 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-18 03:44:41.674 -07 000000479 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 19 ms.
17-03-18 03:44:41.674 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 410 410 197 197 28756 150\n [Camera]
17-03-18 03:44:41.874 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 03:44:42.284 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 602
17-03-18 03:44:42.284 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 602
17-03-18 03:44:42.284 -07 000000479 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:44:42.284 -07 000000479 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:44:42.284 -07 000000479 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) start.
17-03-18 03:44:42.294 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 602
17-03-18 03:44:42.294 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 602
17-03-18 03:44:42.294 -07 000000611 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:44:42.294 -07 000000611 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:44:42.294 -07 000000611 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-18 03:44:42.484 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28756 795
17-03-18 03:44:42.634 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP turning grn on 945
17-03-18 03:44:42.664 -07 000000611 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 376 ms.
17-03-18 03:44:42.664 -07 000000611 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-18 03:44:42.664 -07 000000611 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:44:42.674 -07 000000479 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) end. Duration was 382 ms.
17-03-18 03:44:42.674 -07 000000479 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-18 03:44:42.674 -07 000000479 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:44:42.674 -07 000000611 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:44:42.674 -07 000000479 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:44:42.674 -07 000000479 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-18 03:44:42.684 -07 000000611 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-18 03:44:42.824 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1142
17-03-18 03:44:42.824 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1142
17-03-18 03:44:42.824 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:44:42.824 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:44:42.824 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) start.
17-03-18 03:44:42.834 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1142
17-03-18 03:44:42.834 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1142
17-03-18 03:44:42.834 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:44:42.834 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:44:42.834 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2486767776, 0x0, 418435064) start.
17-03-18 03:44:43.014 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP 1334
17-03-18 03:44:43.024 -07 000000467 INF: FPGA: Recv CAMDBLSNAP
17-03-18 03:44:43.024 -07 000000610 INF: FPGA: 'CAMDBLSNAP 410 410 197 197 28756 150' command took 2 ms to send, 1330 ms to get response, and 1341 ms overall
17-03-18 03:44:43.024 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 03:44:43.024 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 8 at Y-position 64.87890625, Z-Position -0.130833363075056. ------
17-03-18 03:44:43.024 -07 000000437 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 03:44:43.024 -07 000000479 INF: Y Motor: MoveYZ optimized starting. Moving Y to 65.7226 mm, moving Z to -0.13746 mm
17-03-18 03:44:43.024 -07 000000479 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 03:44:43.024 -07 000000467 INF: Y Motor: Entering MoveAbsStepped (target = 105156 steps, sync = True, waitForSettling = True)
17-03-18 03:44:43.024 -07 000000467 INF: Y Motor: Moving to 65.7226 mm, started at 64.8789 mm, delta = 0.8437 mm
17-03-18 03:44:43.034 -07 000000579 INF: Z Motor: Entering MoveAbsStepped (DAC = 30029, sync = True, waitForSettling = False)
17-03-18 03:44:43.034 -07 000000611 INF: FPGA: Recv FOCMRRCUR 
17-03-18 03:44:43.034 -07 000000437 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 03:44:43.034 -07 000000467 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:44:43.034 -07 000000579 INF: Z Motor: Moving to -0.137464 mm, started at -0.130833 mm, distance = -6.63 um
17-03-18 03:44:43.034 -07 000000512 INF: FPGA: Recv YRDPOS 132873
17-03-18 03:44:43.044 -07 000000467 INF: FPGA: 'YRDPOS' command took 1 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:44:43.044 -07 000000467 INF: Y Motor: Encoder = 132873 = motor step 103807.0 = 64.8794 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:44:43.044 -07 000000437 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 03:44:43.044 -07 000000467 INF: Y Motor: Last commanded position = 64.8926 mm (103828.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 03:44:43.044 -07 000000467 INF: Y Motor: Moving 1349 steps-28
17-03-18 03:44:43.054 -07 000000579 INF: FPGA: Xmit ZDACW 30029\n [Z Motor]
17-03-18 03:44:43.054 -07 000000474 INF: FPGA: Recv ZDACW
17-03-18 03:44:43.064 -07 000000467 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 03:44:43.064 -07 000000579 INF: FPGA: 'ZDACW 30029' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-18 03:44:43.074 -07 000000579 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:44:43.074 -07 000000480 INF: FPGA: Recv ZDACR 30029
17-03-18 03:44:43.084 -07 000000579 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 03:44:43.084 -07 000000579 INF: Z Motor: MoveAbsStepped took 50 ms (did NOT wait for settling yet))
17-03-18 03:44:43.234 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) end. Duration was 401 ms.
17-03-18 03:44:43.234 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 03:44:43.234 -07 000000625 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:44:43.234 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2486767776, 0x0, 418435064) end. Duration was 401 ms.
17-03-18 03:44:43.234 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 03:44:43.234 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:44:43.234 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:44:43.234 -07 000000625 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 03:44:43.234 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 410 ms.
17-03-18 03:44:43.244 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-18 03:44:43.244 -07 000000480 INF: FPGA: Recv FOCMRRFOC
17-03-18 03:44:43.244 -07 000000437 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 196 ms to get response, and 216 ms overall
17-03-18 03:44:43.434 -07 000000579 INF: FPGA: Recv YMVTILE
17-03-18 03:44:43.434 -07 000000467 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 392 ms overall
17-03-18 03:44:43.484 -07 000000467 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:44:43.484 -07 000000579 INF: FPGA: Recv YRDPOS 134582
17-03-18 03:44:43.494 -07 000000467 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 03:44:43.494 -07 000000467 INF: Y Motor: Encoder = 134582 = motor step 105142.2 = 65.7139 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:44:43.494 -07 000000467 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-18 03:44:43.494 -07 000000467 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 392 ms, distance = 0.844 mm, average velocity = 2.152 mm/sec
17-03-18 03:44:44.444 -07 000000467 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:44:44.444 -07 000000611 INF: FPGA: Recv YRDPOS 134583
17-03-18 03:44:44.454 -07 000000467 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:44:44.454 -07 000000467 INF: Y Motor: Encoder = 134583 = motor step 105143.0 = 65.7144 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:44:44.494 -07 000000467 INF: Y Motor: After move to 65.722610, error = -0.008255, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 03:44:44.494 -07 000000467 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 03:44:44.494 -07 000000467 INF: Y Motor: Moved to 65.7144 after 1465 ms (table move)
17-03-18 03:44:44.494 -07 000000479 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137464 mm (DAC = 30029)
17-03-18 03:44:44.494 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:44:44.504 -07 000000480 INF: FPGA: Recv ZSGSRD 30693
17-03-18 03:44:44.504 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 2 ms overall
17-03-18 03:44:44.504 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:44:44.504 -07 000000579 INF: FPGA: Recv ZSGSRD 30685
17-03-18 03:44:44.514 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 03:44:44.514 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:44:44.514 -07 000000480 INF: FPGA: Recv ZSGSRD 30687
17-03-18 03:44:44.524 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:44:44.524 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:44:44.524 -07 000000625 INF: FPGA: Recv ZSGSRD 30684
17-03-18 03:44:44.534 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:44:44.534 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:44:44.534 -07 000000606 INF: FPGA: Recv ZSGSRD 30685
17-03-18 03:44:44.544 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:44:44.544 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:44:44.544 -07 000000474 INF: FPGA: Recv ZSGSRD 30688
17-03-18 03:44:44.554 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:44:44.554 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:44:44.554 -07 000000474 INF: FPGA: Recv ZSGSRD 30684
17-03-18 03:44:44.564 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:44:44.564 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:44:44.564 -07 000000474 INF: FPGA: Recv ZSGSRD 30682
17-03-18 03:44:44.574 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:44:44.574 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:44:44.574 -07 000000561 INF: FPGA: Recv ZSGSRD 30689
17-03-18 03:44:44.584 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:44:44.584 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:44:44.584 -07 000000467 INF: FPGA: Recv ZSGSRD 30692
17-03-18 03:44:44.594 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:44:44.594 -07 000000479 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:44:44.594 -07 000000382 INF: FPGA: Recv ZPIEZORD 26505
17-03-18 03:44:44.604 -07 000000479 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:44:44.604 -07 000000479 INF: Z Motor: Piezo is near 36.6 V (nominally 0 to 100 V), expect near 45.8 V, since DAC is at 4.582 V. Piezo Error = -9.2 V.
17-03-18 03:44:44.604 -07 000000479 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.5 um, Read 10 ADC samples: Avg = 30687 (-136.7 uncal um), Error = 0.8 uncal um, Median = 30686 (-136.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 30682 (-136.6 uncal um), Max = 30693 (-136.7 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 03:44:44.604 -07 000000479 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30687, posNoise = 6, negNoise = 5
17-03-18 03:44:44.604 -07 000000479 INF: Z Motor: After move to -0.137464, error = 0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:44:44.604 -07 000000479 INF: Z Motor: Settle wait time = 1467 ms, measure time = 103 ms (allowed 150 ms), total time = 1570 ms
17-03-18 03:44:44.604 -07 000000479 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-18 03:44:44.654 -07 000000479 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1622 ms
17-03-18 03:44:44.654 -07 000000479 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 03:44:44.654 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:44:44.654 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:44:44.654 -07 000000579 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:44:44.654 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:44:44.654 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 03:44:44.654 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:44:44.654 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 03:44:44.654 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 03:44:44.664 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 03:44:44.664 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 03:44:44.674 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 9 ms.
17-03-18 03:44:44.674 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 14 ms.
17-03-18 03:44:44.674 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 03:44:44.724 -07 000000561 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 03:44:45.014 -07 000000382 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 03:44:45.014 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 03:44:45.024 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 03:44:45.024 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1201016592, 0x0, 559484976) start.
17-03-18 03:44:45.054 -07 000000474 INF: FPGA: Recv @CAMSNAP 380
17-03-18 03:44:45.054 -07 000000479 INF: FPGA: Recv CAMSNAP
17-03-18 03:44:45.054 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 379 ms to get response, and 384 ms overall
17-03-18 03:44:45.134 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1201016592, 0x0, 559484976) end. Duration was 117 ms.
17-03-18 03:44:45.134 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:44:45.134 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 03:44:45.134 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-18 03:44:45.164 -07 000000467 INF: Autofocus start
17-03-18 03:44:45.164 -07 000000467 INF: MeasureProfile start
17-03-18 03:44:45.164 -07 000000561 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 03:44:45.164 -07 000000606 INF: FPGA: Recv FOCMRRCUR 
17-03-18 03:44:45.174 -07 000000561 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 03:44:45.174 -07 000000561 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 03:44:45.174 -07 000000467 INF: MeasureProfile done
17-03-18 03:44:45.174 -07 000000467 INF: X=16  Z correction [um]=0.0530179
17-03-18 03:44:45.174 -07 000000467 INF: Autofocus finished
17-03-18 03:44:45.374 -07 000000467 INF: FPGA: Recv FOCMRRIMG
17-03-18 03:44:45.374 -07 000000561 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 03:44:45.374 -07 000000610 INF: ------------ Scan Snapping tile 8 at Y-position 65.71435546875, Z-position -0.137463150005353. ----------
17-03-18 03:44:45.374 -07 000000610 INF: Cycle	116	Tile	8	Exposure Settings		A	410	G	197	T	197	C	410
17-03-18 03:44:45.384 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28553, sync = True, waitForSettling = True)
17-03-18 03:44:45.384 -07 000000610 INF: Z Motor: Moving to -0.130707 mm, started at -0.137463 mm, distance = 6.76 um
17-03-18 03:44:45.384 -07 000000610 INF: FPGA: Xmit ZDACW 28553\n [Z Motor]
17-03-18 03:44:45.384 -07 000000625 INF: FPGA: Recv ZDACW
17-03-18 03:44:45.394 -07 000000610 INF: FPGA: 'ZDACW 28553' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:44:45.394 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:44:45.394 -07 000000606 INF: FPGA: Recv ZDACR 28553
17-03-18 03:44:45.404 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:44:45.404 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 03:44:45.554 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:44:45.554 -07 000000606 INF: FPGA: Recv ZSGSRD 29635
17-03-18 03:44:45.564 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:44:45.564 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:44:45.564 -07 000000606 INF: FPGA: Recv ZSGSRD 29645
17-03-18 03:44:45.574 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:44:45.574 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:44:45.574 -07 000000606 INF: FPGA: Recv ZSGSRD 29638
17-03-18 03:44:45.584 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:44:45.584 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:44:45.584 -07 000000606 INF: FPGA: Recv ZSGSRD 29641
17-03-18 03:44:45.594 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:44:45.594 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:44:45.594 -07 000000606 INF: FPGA: Recv ZSGSRD 29641
17-03-18 03:44:45.604 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:44:45.604 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:44:45.604 -07 000000606 INF: FPGA: Recv ZSGSRD 29641
17-03-18 03:44:45.614 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:44:45.614 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:44:45.614 -07 000000606 INF: FPGA: Recv ZSGSRD 29638
17-03-18 03:44:45.624 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:44:45.624 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:44:45.624 -07 000000606 INF: FPGA: Recv ZSGSRD 29632
17-03-18 03:44:45.634 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:44:45.634 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:44:45.634 -07 000000606 INF: FPGA: Recv ZSGSRD 29633
17-03-18 03:44:45.644 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:44:45.644 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:44:45.644 -07 000000561 INF: FPGA: Recv ZSGSRD 29636
17-03-18 03:44:45.654 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:44:45.654 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:44:45.654 -07 000000606 INF: FPGA: Recv ZPIEZORD 25081
17-03-18 03:44:45.664 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:44:45.664 -07 000000610 INF: Z Motor: Piezo is near 33.6 V (nominally 0 to 100 V), expect near 43.6 V, since DAC is at 4.357 V. Piezo Error = -10.0 V.
17-03-18 03:44:45.664 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.7 um, Read 10 ADC samples: Avg = 29638 (-129.9 uncal um), Error = 0.8 uncal um, Median = 29638 (-129.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 29632 (-129.9 uncal um), Max = 29645 (-130.0 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 03:44:45.664 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29638, posNoise = 7, negNoise = 6
17-03-18 03:44:45.664 -07 000000610 INF: Z Motor: After move to -0.130707, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:44:45.664 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-18 03:44:45.664 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:44:45.664 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:44:45.664 -07 000000606 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:44:45.664 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:44:45.664 -07 000000606 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 03:44:45.664 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:44:45.664 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 03:44:45.664 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 03:44:45.664 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 03:44:45.664 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 03:44:45.664 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 03:44:45.664 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 03:44:45.674 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 03:44:45.674 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 03:44:45.674 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 03:44:45.674 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 03:44:45.684 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 14 ms.
17-03-18 03:44:45.684 -07 000000606 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 19 ms.
17-03-18 03:44:45.684 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 03:44:45.684 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 03:44:45.694 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 410 410 197 197 28730 150\n [Camera]
17-03-18 03:44:45.894 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 03:44:46.294 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 602
17-03-18 03:44:46.304 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 602
17-03-18 03:44:46.304 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:44:46.304 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:44:46.304 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) start.
17-03-18 03:44:46.304 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 602
17-03-18 03:44:46.304 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 602
17-03-18 03:44:46.304 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:44:46.304 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:44:46.304 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) start.
17-03-18 03:44:46.694 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) end. Duration was 398 ms.
17-03-18 03:44:46.694 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 03:44:46.694 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:44:46.704 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:44:46.704 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 03:44:46.704 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) end. Duration was 399 ms.
17-03-18 03:44:46.704 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 03:44:46.704 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:44:46.704 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:44:46.714 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28730 795
17-03-18 03:44:46.714 -07 000000606 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 03:44:46.714 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP turning grn on 952
17-03-18 03:44:46.714 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-18 03:44:46.714 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 115. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1671, R2=1741, Total=3412. Warn if over 250 bubbles per interval.
17-03-18 03:44:46.844 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1142
17-03-18 03:44:46.844 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1142
17-03-18 03:44:46.844 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:44:46.844 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:44:46.844 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 2620985504, 0x0, 391868352) start.
17-03-18 03:44:46.844 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1142
17-03-18 03:44:46.844 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1142
17-03-18 03:44:46.854 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:44:46.854 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:44:46.854 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 2684358704, 0x0, 418435064) start.
17-03-18 03:44:47.024 -07 000000467 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 116, FrontChillerTemperature: 4.000345,
17-03-18 03:44:47.034 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP 1335
17-03-18 03:44:47.034 -07 000000581 INF: FPGA: Recv CAMDBLSNAP
17-03-18 03:44:47.034 -07 000000610 INF: FPGA: 'CAMDBLSNAP 410 410 197 197 28730 150' command took 2 ms to send, 1331 ms to get response, and 1341 ms overall
17-03-18 03:44:47.034 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 03:44:47.034 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 9 at Y-position 65.71435546875, Z-Position -0.130724151468646. ------
17-03-18 03:44:47.034 -07 000000487 INF: Y Motor: MoveYZ optimized starting. Moving Y to 66.5526 mm, moving Z to -0.13704 mm
17-03-18 03:44:47.034 -07 000000487 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 03:44:47.034 -07 000000467 INF: Y Motor: Entering MoveAbsStepped (target = 106484 steps, sync = True, waitForSettling = True)
17-03-18 03:44:47.034 -07 000000467 INF: Y Motor: Moving to 66.5526 mm, started at 65.7144 mm, delta = 0.8382 mm
17-03-18 03:44:47.044 -07 000000455 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 03:44:47.044 -07 000000569 INF: Z Motor: Entering MoveAbsStepped (DAC = 29937, sync = True, waitForSettling = False)
17-03-18 03:44:47.044 -07 000000569 INF: Z Motor: Moving to -0.137043 mm, started at -0.130724 mm, distance = -6.32 um
17-03-18 03:44:47.044 -07 000000012 INF: FPGA: Recv FOCMRRCUR 
17-03-18 03:44:47.054 -07 000000455 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-18 03:44:47.064 -07 000000467 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:44:47.064 -07 000000581 INF: FPGA: Recv YRDPOS 134583
17-03-18 03:44:47.074 -07 000000467 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-18 03:44:47.074 -07 000000569 INF: FPGA: Xmit ZDACW 29937\n [Z Motor]
17-03-18 03:44:47.074 -07 000000467 INF: Y Motor: Encoder = 134583 = motor step 105143.0 = 65.7144 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:44:47.074 -07 000000467 INF: Y Motor: Last commanded position = 65.7226 mm (105156.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 03:44:47.074 -07 000000467 INF: Y Motor: Moving 1341 steps-18
17-03-18 03:44:47.074 -07 000000606 INF: FPGA: Recv ZDACW
17-03-18 03:44:47.084 -07 000000569 INF: FPGA: 'ZDACW 29937' command took 0 ms to send, 0 ms to get response, and 39 ms overall
17-03-18 03:44:47.084 -07 000000455 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 03:44:47.104 -07 000000467 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 03:44:47.114 -07 000000569 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:44:47.114 -07 000000608 INF: FPGA: Recv ZDACR 29937
17-03-18 03:44:47.124 -07 000000569 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 39 ms overall
17-03-18 03:44:47.124 -07 000000569 INF: Z Motor: MoveAbsStepped took 79 ms (did NOT wait for settling yet))
17-03-18 03:44:47.244 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 2620985504, 0x0, 391868352) end. Duration was 401 ms.
17-03-18 03:44:47.244 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 03:44:47.244 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:44:47.244 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 2684358704, 0x0, 418435064) end. Duration was 398 ms.
17-03-18 03:44:47.244 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 03:44:47.244 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:44:47.254 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-18 03:44:47.254 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 410 ms.
17-03-18 03:44:47.254 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:44:47.254 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 408 ms.
17-03-18 03:44:47.284 -07 000000581 INF: FPGA: Recv FOCMRRFOC
17-03-18 03:44:47.284 -07 000000455 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 232 ms overall
17-03-18 03:44:47.474 -07 000000606 INF: FPGA: Recv YMVTILE
17-03-18 03:44:47.474 -07 000000467 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 405 ms overall
17-03-18 03:44:47.524 -07 000000467 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:44:47.524 -07 000000581 INF: FPGA: Recv YRDPOS 136272
17-03-18 03:44:47.534 -07 000000467 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 03:44:47.534 -07 000000467 INF: Y Motor: Encoder = 136272 = motor step 106462.5 = 66.5391 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:44:47.534 -07 000000467 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-18 03:44:47.534 -07 000000467 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 405 ms, distance = 0.838 mm, average velocity = 2.070 mm/sec
17-03-18 03:44:48.484 -07 000000467 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:44:48.484 -07 000000569 INF: FPGA: Recv YRDPOS 136272
17-03-18 03:44:48.494 -07 000000467 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:44:48.494 -07 000000467 INF: Y Motor: Encoder = 136272 = motor step 106462.5 = 66.5391 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:44:48.524 -07 000000467 INF: Y Motor: After move to 66.552605, error = -0.013542, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 03:44:48.524 -07 000000467 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 03:44:48.524 -07 000000467 INF: Y Motor: Moved to 66.5391 after 1482 ms (table move)
17-03-18 03:44:48.524 -07 000000487 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137043 mm (DAC = 29937)
17-03-18 03:44:48.524 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:44:48.524 -07 000000467 INF: FPGA: Recv ZSGSRD 30624
17-03-18 03:44:48.534 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 03:44:48.534 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:44:48.534 -07 000000579 INF: FPGA: Recv ZSGSRD 30619
17-03-18 03:44:48.544 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:44:48.544 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:44:48.544 -07 000000608 INF: FPGA: Recv ZSGSRD 30624
17-03-18 03:44:48.554 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:44:48.554 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:44:48.554 -07 000000608 INF: FPGA: Recv ZSGSRD 30628
17-03-18 03:44:48.564 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:44:48.564 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:44:48.564 -07 000000608 INF: FPGA: Recv ZSGSRD 30622
17-03-18 03:44:48.574 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:44:48.574 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:44:48.574 -07 000000561 INF: FPGA: Recv ZSGSRD 30621
17-03-18 03:44:48.584 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:44:48.584 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:44:48.584 -07 000000581 INF: FPGA: Recv ZSGSRD 30623
17-03-18 03:44:48.594 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 03:44:48.594 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:44:48.594 -07 000000581 INF: FPGA: Recv ZSGSRD 30620
17-03-18 03:44:48.604 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:44:48.604 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:44:48.604 -07 000000455 INF: FPGA: Recv ZSGSRD 30624
17-03-18 03:44:48.614 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:44:48.614 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:44:48.614 -07 000000569 INF: FPGA: Recv ZSGSRD 30623
17-03-18 03:44:48.624 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:44:48.624 -07 000000487 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:44:48.624 -07 000000581 INF: FPGA: Recv ZPIEZORD 26408
17-03-18 03:44:48.634 -07 000000487 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:44:48.634 -07 000000487 INF: Z Motor: Piezo is near 36.4 V (nominally 0 to 100 V), expect near 45.7 V, since DAC is at 4.568 V. Piezo Error = -9.3 V.
17-03-18 03:44:48.634 -07 000000487 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.0 um, Read 10 ADC samples: Avg = 30623 (-136.3 uncal um), Error = 0.8 uncal um, Median = 30623 (-136.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 30619 (-136.2 uncal um), Max = 30628 (-136.3 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 03:44:48.634 -07 000000487 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30623, posNoise = 5, negNoise = 4
17-03-18 03:44:48.634 -07 000000487 INF: Z Motor: After move to -0.137043, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:44:48.634 -07 000000487 INF: Z Motor: Settle wait time = 1483 ms, measure time = 107 ms (allowed 150 ms), total time = 1590 ms
17-03-18 03:44:48.634 -07 000000487 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-18 03:44:48.684 -07 000000487 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1643 ms
17-03-18 03:44:48.684 -07 000000487 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 03:44:48.684 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:44:48.684 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:44:48.684 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:44:48.684 -07 000000608 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:44:48.684 -07 000000382 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 03:44:48.684 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:44:48.684 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 03:44:48.684 -07 000000382 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 03:44:48.694 -07 000000382 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 03:44:48.694 -07 000000382 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 03:44:48.704 -07 000000382 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 03:44:48.704 -07 000000382 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms.
17-03-18 03:44:48.704 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 03:44:48.754 -07 000000561 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 03:44:49.054 -07 000000608 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 03:44:49.054 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 03:44:49.054 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 03:44:49.054 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2387972312, 0x0, 559484976) start.
17-03-18 03:44:49.094 -07 000000462 INF: FPGA: Recv @CAMSNAP 380
17-03-18 03:44:49.094 -07 000000606 INF: FPGA: Recv CAMSNAP
17-03-18 03:44:49.094 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 381 ms to get response, and 384 ms overall
17-03-18 03:44:49.164 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2387972312, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 03:44:49.164 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:44:49.174 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 03:44:49.174 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-18 03:44:49.194 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 03:44:49.194 -07 000000487 INF: Autofocus start
17-03-18 03:44:49.194 -07 000000487 INF: MeasureProfile start
17-03-18 03:44:49.194 -07 000000382 INF: FPGA: Recv FOCMRRCUR 
17-03-18 03:44:49.204 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 03:44:49.204 -07 000000569 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 03:44:49.214 -07 000000487 INF: MeasureProfile done
17-03-18 03:44:49.214 -07 000000487 INF: X=0  Z correction [um]=-0.02394831
17-03-18 03:44:49.214 -07 000000487 INF: Autofocus finished
17-03-18 03:44:49.404 -07 000000467 INF: FPGA: Recv FOCMRRIMG
17-03-18 03:44:49.404 -07 000000569 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 195 ms to get response, and 202 ms overall
17-03-18 03:44:49.404 -07 000000610 INF: ------------ Scan Snapping tile 9 at Y-position 66.5390625, Z-position -0.137052000428281. ----------
17-03-18 03:44:49.414 -07 000000610 INF: Cycle	116	Tile	9	Exposure Settings		A	410	G	197	T	197	C	410
17-03-18 03:44:49.414 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28444, sync = True, waitForSettling = True)
17-03-18 03:44:49.414 -07 000000610 INF: Z Motor: Moving to -0.130208 mm, started at -0.137052 mm, distance = 6.84 um
17-03-18 03:44:49.414 -07 000000610 INF: FPGA: Xmit ZDACW 28444\n [Z Motor]
17-03-18 03:44:49.414 -07 000000467 INF: FPGA: Recv ZDACW
17-03-18 03:44:49.424 -07 000000610 INF: FPGA: 'ZDACW 28444' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 03:44:49.424 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:44:49.424 -07 000000569 INF: FPGA: Recv ZDACR 28444
17-03-18 03:44:49.434 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:44:49.434 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 03:44:49.584 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:44:49.584 -07 000000467 INF: FPGA: Recv ZSGSRD 29560
17-03-18 03:44:49.594 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:44:49.594 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:44:49.594 -07 000000467 INF: FPGA: Recv ZSGSRD 29565
17-03-18 03:44:49.604 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:44:49.604 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:44:49.604 -07 000000569 INF: FPGA: Recv ZSGSRD 29554
17-03-18 03:44:49.614 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:44:49.614 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:44:49.614 -07 000000569 INF: FPGA: Recv ZSGSRD 29556
17-03-18 03:44:49.624 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:44:49.624 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:44:49.624 -07 000000569 INF: FPGA: Recv ZSGSRD 29563
17-03-18 03:44:49.634 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:44:49.634 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:44:49.634 -07 000000569 INF: FPGA: Recv ZSGSRD 29558
17-03-18 03:44:49.644 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:44:49.644 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:44:49.644 -07 000000467 INF: FPGA: Recv ZSGSRD 29558
17-03-18 03:44:49.654 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:44:49.654 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:44:49.654 -07 000000467 INF: FPGA: Recv ZSGSRD 29554
17-03-18 03:44:49.664 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:44:49.664 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:44:49.664 -07 000000569 INF: FPGA: Recv ZSGSRD 29558
17-03-18 03:44:49.674 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:44:49.674 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:44:49.674 -07 000000569 INF: FPGA: Recv ZSGSRD 29559
17-03-18 03:44:49.684 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:44:49.684 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:44:49.684 -07 000000569 INF: FPGA: Recv ZPIEZORD 24996
17-03-18 03:44:49.694 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:44:49.694 -07 000000610 INF: Z Motor: Piezo is near 33.4 V (nominally 0 to 100 V), expect near 43.4 V, since DAC is at 4.340 V. Piezo Error = -10.0 V.
17-03-18 03:44:49.694 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.2 um, Read 10 ADC samples: Avg = 29558 (-129.4 uncal um), Error = 0.8 uncal um, Median = 29558 (-129.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29554 (-129.4 uncal um), Max = 29565 (-129.5 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 03:44:49.694 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29558, posNoise = 7, negNoise = 4
17-03-18 03:44:49.694 -07 000000610 INF: Z Motor: After move to -0.130208, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:44:49.694 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 03:44:49.694 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:44:49.694 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:44:49.694 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:44:49.694 -07 000000467 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:44:49.694 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 03:44:49.694 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:44:49.694 -07 000000467 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 03:44:49.694 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 03:44:49.694 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 03:44:49.694 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 03:44:49.694 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 03:44:49.694 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 03:44:49.704 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 03:44:49.704 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 03:44:49.704 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 03:44:49.704 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 03:44:49.714 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 12 ms.
17-03-18 03:44:49.714 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 17 ms.
17-03-18 03:44:49.714 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-18 03:44:49.714 -07 000000467 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 18 ms.
17-03-18 03:44:49.714 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 410 410 197 197 28621 150\n [Camera]
17-03-18 03:44:49.914 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 03:44:50.324 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 602
17-03-18 03:44:50.324 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 602
17-03-18 03:44:50.324 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:44:50.324 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:44:50.324 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 2719780968, 0x0, 391868352) start.
17-03-18 03:44:50.334 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 602
17-03-18 03:44:50.334 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 602
17-03-18 03:44:50.334 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:44:50.334 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:44:50.334 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2755203232, 0x0, 418435064) start.
17-03-18 03:44:50.524 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28621 795
17-03-18 03:44:50.664 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP turning grn on 945
17-03-18 03:44:50.704 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 2719780968, 0x0, 391868352) end. Duration was 376 ms.
17-03-18 03:44:50.704 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-18 03:44:50.704 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:44:50.704 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2755203232, 0x0, 418435064) end. Duration was 374 ms.
17-03-18 03:44:50.704 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-18 03:44:50.704 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:44:50.704 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 03:44:50.704 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-18 03:44:50.714 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 03:44:50.714 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-18 03:44:50.864 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1142
17-03-18 03:44:50.864 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1142
17-03-18 03:44:50.864 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:44:51.014 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1142
17-03-18 03:44:51.014 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1142
17-03-18 03:44:51.014 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:44:51.014 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2818576432, 0x0, 391868352) start.
17-03-18 03:44:51.014 -07 000000611 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:44:51.024 -07 000000611 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:44:51.024 -07 000000611 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) start.
17-03-18 03:44:51.054 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP 1335
17-03-18 03:44:51.054 -07 000000474 INF: FPGA: Recv CAMDBLSNAP
17-03-18 03:44:51.054 -07 000000610 INF: FPGA: 'CAMDBLSNAP 410 410 197 197 28621 150' command took 2 ms to send, 1339 ms to get response, and 1342 ms overall
17-03-18 03:44:51.064 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 03:44:51.064 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 10 at Y-position 66.5390625, Z-Position -0.130210214497305. ------
17-03-18 03:44:51.064 -07 000000479 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 03:44:51.064 -07 000000467 INF: Y Motor: MoveYZ optimized starting. Moving Y to 67.3826 mm, moving Z to -0.13713 mm
17-03-18 03:44:51.064 -07 000000467 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 03:44:51.064 -07 000000480 INF: Y Motor: Entering MoveAbsStepped (target = 107812 steps, sync = True, waitForSettling = True)
17-03-18 03:44:51.064 -07 000000480 INF: Y Motor: Moving to 67.3826 mm, started at 66.5391 mm, delta = 0.8435 mm
17-03-18 03:44:51.064 -07 000000487 INF: FPGA: Recv FOCMRRCUR 
17-03-18 03:44:51.064 -07 000000512 INF: Z Motor: Entering MoveAbsStepped (DAC = 29957, sync = True, waitForSettling = False)
17-03-18 03:44:51.064 -07 000000512 INF: Z Motor: Moving to -0.137134 mm, started at -0.130210 mm, distance = -6.92 um
17-03-18 03:44:51.074 -07 000000479 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 03:44:51.074 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:44:51.074 -07 000000487 INF: FPGA: Recv YRDPOS 136272
17-03-18 03:44:51.084 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-18 03:44:51.084 -07 000000480 INF: Y Motor: Encoder = 136272 = motor step 106462.5 = 66.5391 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:44:51.084 -07 000000480 INF: Y Motor: Last commanded position = 66.5526 mm (106484.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 03:44:51.084 -07 000000480 INF: Y Motor: Moving 1350 steps-28
17-03-18 03:44:51.084 -07 000000479 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 03:44:51.094 -07 000000512 INF: FPGA: Xmit ZDACW 29957\n [Z Motor]
17-03-18 03:44:51.094 -07 000000455 INF: FPGA: Recv ZDACW
17-03-18 03:44:51.104 -07 000000480 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 03:44:51.104 -07 000000512 INF: FPGA: 'ZDACW 29957' command took 2 ms to send, 0 ms to get response, and 30 ms overall
17-03-18 03:44:51.114 -07 000000512 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:44:51.114 -07 000000437 INF: FPGA: Recv ZDACR 29957
17-03-18 03:44:51.124 -07 000000512 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 03:44:51.124 -07 000000512 INF: Z Motor: MoveAbsStepped took 50 ms (did NOT wait for settling yet))
17-03-18 03:44:51.284 -07 000000474 INF: FPGA: Recv FOCMRRFOC
17-03-18 03:44:51.284 -07 000000479 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 193 ms to get response, and 213 ms overall
17-03-18 03:44:51.414 -07 000000611 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) end. Duration was 390 ms.
17-03-18 03:44:51.414 -07 000000611 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-18 03:44:51.414 -07 000000611 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:44:51.414 -07 000000611 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:44:51.414 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2818576432, 0x0, 391868352) end. Duration was 399 ms.
17-03-18 03:44:51.414 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 03:44:51.414 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:44:51.414 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:44:51.414 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 550 ms.
17-03-18 03:44:51.424 -07 000000611 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 406 ms.
17-03-18 03:44:51.474 -07 000000437 INF: FPGA: Recv YMVTILE
17-03-18 03:44:51.474 -07 000000480 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 03:44:51.524 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:44:51.524 -07 000000611 INF: FPGA: Recv YRDPOS 137977
17-03-18 03:44:51.534 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 03:44:51.534 -07 000000480 INF: Y Motor: Encoder = 137977 = motor step 107794.5 = 67.3716 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:44:51.534 -07 000000480 INF: Y Motor: Position error before settling (table move) = -23 encoder counts (-0.011 mm)
17-03-18 03:44:51.534 -07 000000480 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.844 mm, average velocity = 2.119 mm/sec
17-03-18 03:44:51.604 -07 000000611 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 03:44:51.604 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 115. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1671, R2=1741, Total=3412. Warn if over 250 bubbles per interval.
17-03-18 03:44:52.424 -07 000000455 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 116, FrontChillerTemperature: 4.005817,
17-03-18 03:44:52.484 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:44:52.484 -07 000000474 INF: FPGA: Recv YRDPOS 137978
17-03-18 03:44:52.494 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:44:52.494 -07 000000480 INF: Y Motor: Encoder = 137978 = motor step 107795.3 = 67.3721 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:44:52.514 -07 000000480 INF: Y Motor: After move to 67.382607, error = -0.010536, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 03:44:52.514 -07 000000480 INF: Y Motor: Position error after settling (table move) = -22 encoder counts (-0.011 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 03:44:52.514 -07 000000480 INF: Y Motor: Moved to 67.3721 after 1450 ms (table move)
17-03-18 03:44:52.524 -07 000000467 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137134 mm (DAC = 29957)
17-03-18 03:44:52.524 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:44:52.524 -07 000000480 INF: FPGA: Recv ZSGSRD 30644
17-03-18 03:44:52.534 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 03:44:52.534 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:44:52.534 -07 000000480 INF: FPGA: Recv ZSGSRD 30635
17-03-18 03:44:52.544 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:44:52.544 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:44:53.324 -07 000000611 INF: FPGA: Recv ZSGSRD 30636
17-03-18 03:44:53.324 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 770 ms to get response, and 780 ms overall
17-03-18 03:44:53.324 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:44:53.324 -07 000000479 INF: FPGA: Recv ZSGSRD 30644
17-03-18 03:44:53.334 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:44:53.334 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:44:53.334 -07 000000611 INF: FPGA: Recv ZSGSRD 30634
17-03-18 03:44:53.344 -07 000000467 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:44:53.344 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:44:53.344 -07 000000487 INF: FPGA: Recv ZSGSRD 30638
17-03-18 03:44:53.354 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:44:53.354 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:44:53.354 -07 000000479 INF: FPGA: Recv ZSGSRD 30644
17-03-18 03:44:53.364 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:44:53.364 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:44:53.364 -07 000000611 INF: FPGA: Recv ZSGSRD 30635
17-03-18 03:44:53.374 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:44:53.374 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:44:53.374 -07 000000512 INF: FPGA: Recv ZSGSRD 30638
17-03-18 03:44:53.384 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:44:53.384 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:44:53.384 -07 000000561 INF: FPGA: Recv ZSGSRD 30640
17-03-18 03:44:53.394 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:44:53.394 -07 000000467 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:44:53.394 -07 000000480 INF: FPGA: Recv ZPIEZORD 26417
17-03-18 03:44:53.404 -07 000000467 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:44:53.404 -07 000000467 INF: Z Motor: Piezo is near 36.4 V (nominally 0 to 100 V), expect near 45.7 V, since DAC is at 4.571 V. Piezo Error = -9.3 V.
17-03-18 03:44:53.404 -07 000000467 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.1 um, Read 10 ADC samples: Avg = 30639 (-136.4 uncal um), Error = 0.8 uncal um, Median = 30638 (-136.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 30634 (-136.3 uncal um), Max = 30644 (-136.4 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 03:44:53.404 -07 000000467 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30639, posNoise = 5, negNoise = 5
17-03-18 03:44:53.404 -07 000000467 INF: Z Motor: After move to -0.137134, error = -0.000020, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:44:53.404 -07 000000467 INF: Z Motor: Settle wait time = 1453 ms, measure time = 878 ms (allowed 150 ms), total time = 2331 ms
17-03-18 03:44:53.404 -07 000000467 INF: Z Motor: Warning: Actual position measuring time = 878 ms, longer than max expected time of 150 ms
17-03-18 03:44:53.404 -07 000000467 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2335 ms
17-03-18 03:44:53.404 -07 000000467 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 03:44:53.404 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:44:53.404 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:44:53.404 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:44:53.404 -07 000000479 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 03:44:53.404 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:44:53.404 -07 000000611 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:44:53.404 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 03:44:53.404 -07 000000479 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 03:44:53.414 -07 000000479 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 03:44:53.414 -07 000000479 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 03:44:53.414 -07 000000479 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 03:44:53.414 -07 000000479 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 03:44:53.424 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 03:44:53.464 -07 000000512 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 03:44:53.764 -07 000000561 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 03:44:53.764 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 03:44:53.764 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 03:44:53.774 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2147487792, 0x0, 559484976) start.
17-03-18 03:44:53.804 -07 000000479 INF: FPGA: Recv @CAMSNAP 380
17-03-18 03:44:53.804 -07 000000437 INF: FPGA: Recv CAMSNAP
17-03-18 03:44:53.804 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 384 ms overall
17-03-18 03:44:53.894 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2147487792, 0x0, 559484976) end. Duration was 119 ms.
17-03-18 03:44:53.894 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:44:53.894 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 03:44:53.894 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 123 ms.
17-03-18 03:44:53.904 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 03:44:53.904 -07 000000480 INF: Autofocus start
17-03-18 03:44:53.904 -07 000000480 INF: MeasureProfile start
17-03-18 03:44:53.914 -07 000000487 INF: FPGA: Recv FOCMRRCUR 
17-03-18 03:44:53.914 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 03:44:53.914 -07 000000512 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 03:44:53.924 -07 000000480 INF: MeasureProfile done
17-03-18 03:44:53.924 -07 000000480 INF: X=0  Z correction [um]=-0.02394831
17-03-18 03:44:53.924 -07 000000480 INF: Autofocus finished
17-03-18 03:44:54.114 -07 000000479 INF: FPGA: Recv FOCMRRIMG
17-03-18 03:44:54.114 -07 000000512 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 202 ms overall
17-03-18 03:44:54.114 -07 000000610 INF: ------------ Scan Snapping tile 10 at Y-position 67.3720703125, Z-position -0.137154787822549. ----------
17-03-18 03:44:54.114 -07 000000610 INF: Cycle	116	Tile	10	Exposure Settings		A	410	G	197	T	197	C	410
17-03-18 03:44:54.124 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28464, sync = True, waitForSettling = True)
17-03-18 03:44:54.124 -07 000000610 INF: Z Motor: Moving to -0.130300 mm, started at -0.137155 mm, distance = 6.85 um
17-03-18 03:44:54.124 -07 000000610 INF: FPGA: Xmit ZDACW 28464\n [Z Motor]
17-03-18 03:44:54.124 -07 000000512 INF: FPGA: Recv ZDACW
17-03-18 03:44:54.134 -07 000000610 INF: FPGA: 'ZDACW 28464' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 03:44:54.134 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:44:54.134 -07 000000611 INF: FPGA: Recv ZDACR 28464
17-03-18 03:44:54.144 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:44:54.144 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 03:44:54.294 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:44:54.294 -07 000000512 INF: FPGA: Recv ZSGSRD 29576
17-03-18 03:44:54.304 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:44:54.304 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:44:54.304 -07 000000611 INF: FPGA: Recv ZSGSRD 29577
17-03-18 03:44:54.314 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:44:54.314 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:44:54.314 -07 000000512 INF: FPGA: Recv ZSGSRD 29564
17-03-18 03:44:54.324 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:44:54.324 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:44:54.324 -07 000000512 INF: FPGA: Recv ZSGSRD 29570
17-03-18 03:44:54.334 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:44:54.334 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:44:54.334 -07 000000487 INF: FPGA: Recv ZSGSRD 29569
17-03-18 03:44:54.344 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:44:54.344 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:44:54.344 -07 000000487 INF: FPGA: Recv ZSGSRD 29569
17-03-18 03:44:54.354 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:44:54.354 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:44:54.354 -07 000000487 INF: FPGA: Recv ZSGSRD 29576
17-03-18 03:44:54.364 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:44:54.364 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:44:54.364 -07 000000487 INF: FPGA: Recv ZSGSRD 29572
17-03-18 03:44:54.374 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:44:54.374 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:44:54.374 -07 000000437 INF: FPGA: Recv ZSGSRD 29574
17-03-18 03:44:54.384 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:44:54.384 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:44:54.384 -07 000000487 INF: FPGA: Recv ZSGSRD 29572
17-03-18 03:44:54.394 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:44:54.394 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:44:54.394 -07 000000437 INF: FPGA: Recv ZPIEZORD 25047
17-03-18 03:44:54.404 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:44:54.404 -07 000000610 INF: Z Motor: Piezo is near 33.5 V (nominally 0 to 100 V), expect near 43.4 V, since DAC is at 4.343 V. Piezo Error = -9.9 V.
17-03-18 03:44:54.404 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.3 um, Read 10 ADC samples: Avg = 29572 (-129.5 uncal um), Error = 0.8 uncal um, Median = 29572 (-129.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 29564 (-129.5 uncal um), Max = 29577 (-129.6 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 03:44:54.404 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29572, posNoise = 5, negNoise = 8
17-03-18 03:44:54.404 -07 000000610 INF: Z Motor: After move to -0.130300, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:44:54.404 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 03:44:54.404 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:44:54.404 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:44:54.404 -07 000000479 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:44:54.404 -07 000000581 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:44:54.404 -07 000000487 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 03:44:54.404 -07 000000487 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 03:44:54.404 -07 000000611 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 03:44:54.404 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:44:54.404 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 03:44:54.404 -07 000000611 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 03:44:54.404 -07 000000487 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-18 03:44:54.404 -07 000000487 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 03:44:54.414 -07 000000611 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 03:44:54.414 -07 000000611 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 03:44:54.414 -07 000000487 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-18 03:44:54.414 -07 000000487 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 03:44:54.424 -07 000000611 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 03:44:54.424 -07 000000611 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 03:44:54.424 -07 000000487 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 03:44:54.424 -07 000000487 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 03:44:54.424 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 410 410 197 197 28641 150\n [Camera]
17-03-18 03:44:54.624 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 03:44:55.034 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 602
17-03-18 03:44:55.034 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 602
17-03-18 03:44:55.034 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:44:55.044 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 602
17-03-18 03:44:55.044 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 602
17-03-18 03:44:55.044 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:44:55.044 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:44:55.044 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2199785120, 0x0, 391868352) start.
17-03-18 03:44:55.054 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:44:55.054 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 03:44:55.234 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28641 795
17-03-18 03:44:55.384 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP turning grn on 945
17-03-18 03:44:55.424 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 378 ms.
17-03-18 03:44:55.424 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-18 03:44:55.424 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:44:55.424 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2199785120, 0x0, 391868352) end. Duration was 385 ms.
17-03-18 03:44:55.424 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-18 03:44:55.424 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:44:55.434 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 03:44:55.434 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 03:44:55.434 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-18 03:44:55.444 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-18 03:44:55.574 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1142
17-03-18 03:44:55.574 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1142
17-03-18 03:44:55.584 -07 000000487 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:44:55.584 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1142
17-03-18 03:44:55.584 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1142
17-03-18 03:44:55.584 -07 000000437 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:44:55.584 -07 000000487 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:44:55.584 -07 000000487 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-18 03:44:55.584 -07 000000437 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:44:55.584 -07 000000437 INF: Camera: sBCa_ReadImage(785074704, 2199785120, 0x0, 418435064) start.
17-03-18 03:44:55.764 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP 1334
17-03-18 03:44:55.774 -07 000000581 INF: FPGA: Recv CAMDBLSNAP
17-03-18 03:44:55.774 -07 000000610 INF: FPGA: 'CAMDBLSNAP 410 410 197 197 28641 150' command took 2 ms to send, 1330 ms to get response, and 1341 ms overall
17-03-18 03:44:55.774 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 03:44:55.774 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 11 at Y-position 67.3720703125, Z-Position -0.13030015346729. ------
17-03-18 03:44:55.774 -07 000000479 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 03:44:55.774 -07 000000569 INF: Y Motor: MoveYZ optimized starting. Moving Y to 68.2126 mm, moving Z to -0.13658 mm
17-03-18 03:44:55.774 -07 000000569 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 03:44:55.774 -07 000000467 INF: Y Motor: Entering MoveAbsStepped (target = 109140 steps, sync = True, waitForSettling = True)
17-03-18 03:44:55.774 -07 000000467 INF: Y Motor: Moving to 68.2126 mm, started at 67.3721 mm, delta = 0.8405 mm
17-03-18 03:44:55.774 -07 000000581 INF: Z Motor: Entering MoveAbsStepped (DAC = 29836, sync = True, waitForSettling = False)
17-03-18 03:44:55.774 -07 000000581 INF: Z Motor: Moving to -0.136580 mm, started at -0.130300 mm, distance = -6.28 um
17-03-18 03:44:55.774 -07 000000611 INF: FPGA: Recv FOCMRRCUR 
17-03-18 03:44:55.784 -07 000000581 INF: FPGA: Xmit ZDACW 29836\n [Z Motor]
17-03-18 03:44:55.784 -07 000000479 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 03:44:55.784 -07 000000480 INF: FPGA: Recv ZDACW
17-03-18 03:44:55.794 -07 000000581 INF: FPGA: 'ZDACW 29836' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-18 03:44:55.794 -07 000000581 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:44:55.794 -07 000000480 INF: FPGA: Recv ZDACR 29836
17-03-18 03:44:55.804 -07 000000467 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:44:55.804 -07 000000581 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:44:55.804 -07 000000581 INF: Z Motor: MoveAbsStepped took 21 ms (did NOT wait for settling yet))
17-03-18 03:44:55.804 -07 000000606 INF: FPGA: Recv YRDPOS 137978
17-03-18 03:44:55.814 -07 000000467 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 31 ms overall
17-03-18 03:44:55.814 -07 000000467 INF: Y Motor: Encoder = 137978 = motor step 107795.3 = 67.3721 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:44:55.814 -07 000000467 INF: Y Motor: Last commanded position = 67.3826 mm (107812.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 03:44:55.814 -07 000000467 INF: Y Motor: Moving 1345 steps-23
17-03-18 03:44:55.814 -07 000000479 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 03:44:55.824 -07 000000467 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 03:44:55.984 -07 000000487 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 401 ms.
17-03-18 03:44:55.984 -07 000000487 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 03:44:55.984 -07 000000487 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:44:55.994 -07 000000437 INF: Camera: sBCa_ReadImage(785074704, 2199785120, 0x0, 418435064) end. Duration was 400 ms.
17-03-18 03:44:55.994 -07 000000437 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 03:44:55.994 -07 000000437 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:44:55.994 -07 000000487 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 03:44:55.994 -07 000000487 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 414 ms.
17-03-18 03:44:55.994 -07 000000437 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 03:44:56.004 -07 000000437 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 418 ms.
17-03-18 03:44:56.014 -07 000000608 INF: FPGA: Recv FOCMRRFOC
17-03-18 03:44:56.014 -07 000000479 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 193 ms to get response, and 233 ms overall
17-03-18 03:44:56.194 -07 000000581 INF: FPGA: Recv YMVTILE
17-03-18 03:44:56.194 -07 000000467 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-18 03:44:56.244 -07 000000467 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:44:56.254 -07 000000437 INF: FPGA: Recv YRDPOS 139684
17-03-18 03:44:56.254 -07 000000467 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 03:44:56.254 -07 000000467 INF: Y Motor: Encoder = 139684 = motor step 109128.1 = 68.2051 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:44:56.254 -07 000000467 INF: Y Motor: Position error before settling (table move) = -15 encoder counts (-0.007 mm)
17-03-18 03:44:56.254 -07 000000467 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 387 ms, distance = 0.841 mm, average velocity = 2.172 mm/sec
17-03-18 03:44:56.604 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 03:44:56.604 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 115. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1671, R2=1741, Total=3412. Warn if over 250 bubbles per interval.
17-03-18 03:44:57.204 -07 000000467 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:44:57.204 -07 000000512 INF: FPGA: Recv YRDPOS 139684
17-03-18 03:44:57.214 -07 000000467 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:44:57.214 -07 000000467 INF: Y Motor: Encoder = 139684 = motor step 109128.1 = 68.2051 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:44:57.234 -07 000000467 INF: Y Motor: After move to 68.212608, error = -0.007530, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 03:44:57.234 -07 000000467 INF: Y Motor: Position error after settling (table move) = -15 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 03:44:57.234 -07 000000467 INF: Y Motor: Moved to 68.2051 after 1460 ms (table move)
17-03-18 03:44:57.244 -07 000000569 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136580 mm (DAC = 29836)
17-03-18 03:44:57.244 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:44:57.254 -07 000000487 INF: FPGA: Recv ZSGSRD 30543
17-03-18 03:44:57.254 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 03:44:57.254 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:44:57.254 -07 000000467 INF: FPGA: Recv ZSGSRD 30557
17-03-18 03:44:57.264 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 03:44:57.264 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:44:57.264 -07 000000487 INF: FPGA: Recv ZSGSRD 30552
17-03-18 03:44:57.274 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:44:57.274 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:44:57.274 -07 000000512 INF: FPGA: Recv ZSGSRD 30549
17-03-18 03:44:57.284 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:44:57.284 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:44:57.284 -07 000000487 INF: FPGA: Recv ZSGSRD 30549
17-03-18 03:44:57.294 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:44:57.294 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:44:57.294 -07 000000512 INF: FPGA: Recv ZSGSRD 30548
17-03-18 03:44:57.304 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:44:57.304 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:44:57.304 -07 000000467 INF: FPGA: Recv ZSGSRD 30546
17-03-18 03:44:57.314 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:44:57.314 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:44:57.314 -07 000000608 INF: FPGA: Recv ZSGSRD 30549
17-03-18 03:44:57.324 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:44:57.324 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:44:57.324 -07 000000487 INF: FPGA: Recv ZSGSRD 30553
17-03-18 03:44:57.334 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:44:57.334 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:44:57.334 -07 000000512 INF: FPGA: Recv ZSGSRD 30551
17-03-18 03:44:57.344 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:44:57.344 -07 000000569 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:44:57.354 -07 000000467 INF: FPGA: Recv ZPIEZORD 26364
17-03-18 03:44:57.354 -07 000000569 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 2 ms to get response, and 12 ms overall
17-03-18 03:44:57.354 -07 000000569 INF: Z Motor: Piezo is near 36.3 V (nominally 0 to 100 V), expect near 45.5 V, since DAC is at 4.553 V. Piezo Error = -9.2 V.
17-03-18 03:44:57.354 -07 000000569 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.6 um, Read 10 ADC samples: Avg = 30550 (-135.8 uncal um), Error = 0.8 uncal um, Median = 30549 (-135.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 30543 (-135.7 uncal um), Max = 30557 (-135.8 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 03:44:57.354 -07 000000569 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30550, posNoise = 7, negNoise = 7
17-03-18 03:44:57.354 -07 000000569 INF: Z Motor: After move to -0.136580, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:44:57.354 -07 000000569 INF: Z Motor: Settle wait time = 1463 ms, measure time = 111 ms (allowed 150 ms), total time = 1574 ms
17-03-18 03:44:57.354 -07 000000569 INF: Z Motor: Waiting extra 39 ms after reading position to reach expected total of 150 ms
17-03-18 03:44:57.394 -07 000000569 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1614 ms
17-03-18 03:44:57.394 -07 000000569 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 03:44:57.394 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:44:57.394 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:44:57.394 -07 000000437 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:44:57.394 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:44:57.394 -07 000000012 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 03:44:57.394 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:44:57.394 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 03:44:57.394 -07 000000012 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 03:44:57.394 -07 000000012 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 03:44:57.404 -07 000000012 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 03:44:57.404 -07 000000012 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 03:44:57.404 -07 000000012 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-18 03:44:57.414 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 03:44:57.454 -07 000000479 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 03:44:57.754 -07 000000512 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 03:44:57.754 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 03:44:57.754 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 03:44:57.754 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2147487792, 0x0, 559484976) start.
17-03-18 03:44:57.784 -07 000000608 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 116, FrontChillerTemperature: 3.970374,
17-03-18 03:44:57.794 -07 000000512 INF: FPGA: Recv @CAMSNAP 380
17-03-18 03:44:57.794 -07 000000581 INF: FPGA: Recv CAMSNAP
17-03-18 03:44:57.794 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 03:44:57.874 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2147487792, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 03:44:57.874 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:44:57.874 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 03:44:57.874 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 03:44:57.894 -07 000000606 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 03:44:57.894 -07 000000437 INF: Autofocus start
17-03-18 03:44:57.894 -07 000000437 INF: MeasureProfile start
17-03-18 03:44:57.894 -07 000000467 INF: FPGA: Recv FOCMRRCUR 
17-03-18 03:44:57.904 -07 000000606 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 03:44:57.904 -07 000000606 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 03:44:57.904 -07 000000437 INF: MeasureProfile done
17-03-18 03:44:57.904 -07 000000437 INF: X=32  Z correction [um]=0.1299841
17-03-18 03:44:57.904 -07 000000437 INF: Autofocus finished
17-03-18 03:44:58.104 -07 000000561 INF: FPGA: Recv FOCMRRIMG
17-03-18 03:44:58.104 -07 000000606 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 03:44:58.104 -07 000000610 INF: ------------ Scan Snapping tile 11 at Y-position 68.205078125, Z-position -0.136583032941932. ----------
17-03-18 03:44:58.104 -07 000000610 INF: Cycle	116	Tile	11	Exposure Settings		A	410	G	197	T	197	C	410
17-03-18 03:44:58.114 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28377, sync = True, waitForSettling = True)
17-03-18 03:44:58.114 -07 000000610 INF: Z Motor: Moving to -0.129902 mm, started at -0.136583 mm, distance = 6.68 um
17-03-18 03:44:58.114 -07 000000610 INF: FPGA: Xmit ZDACW 28377\n [Z Motor]
17-03-18 03:44:58.114 -07 000000487 INF: FPGA: Recv ZDACW
17-03-18 03:44:58.124 -07 000000610 INF: FPGA: 'ZDACW 28377' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:44:58.124 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:44:58.124 -07 000000561 INF: FPGA: Recv ZDACR 28377
17-03-18 03:44:58.134 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:44:58.134 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 03:44:58.284 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:44:58.284 -07 000000611 INF: FPGA: Recv ZSGSRD 29522
17-03-18 03:44:58.294 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:44:58.294 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:44:58.294 -07 000000479 INF: FPGA: Recv ZSGSRD 29515
17-03-18 03:44:58.304 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:44:58.304 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:44:58.304 -07 000000611 INF: FPGA: Recv ZSGSRD 29508
17-03-18 03:44:58.314 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:44:58.314 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:44:58.314 -07 000000561 INF: FPGA: Recv ZSGSRD 29506
17-03-18 03:44:58.324 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:44:58.324 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:44:58.324 -07 000000611 INF: FPGA: Recv ZSGSRD 29520
17-03-18 03:44:58.334 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:44:58.334 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:44:58.334 -07 000000012 INF: FPGA: Recv ZSGSRD 29515
17-03-18 03:44:58.344 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:44:58.344 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:44:58.354 -07 000000611 INF: FPGA: Recv ZSGSRD 29505
17-03-18 03:44:58.354 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 9 ms overall
17-03-18 03:44:58.354 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:44:58.354 -07 000000606 INF: FPGA: Recv ZSGSRD 29505
17-03-18 03:44:58.364 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 03:44:58.364 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:44:58.364 -07 000000467 INF: FPGA: Recv ZSGSRD 29508
17-03-18 03:44:58.374 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:44:58.374 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:44:58.374 -07 000000608 INF: FPGA: Recv ZSGSRD 29514
17-03-18 03:44:58.384 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:44:58.384 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:44:58.384 -07 000000437 INF: FPGA: Recv ZPIEZORD 24995
17-03-18 03:44:58.394 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:44:58.394 -07 000000610 INF: Z Motor: Piezo is near 33.4 V (nominally 0 to 100 V), expect near 43.3 V, since DAC is at 4.330 V. Piezo Error = -9.9 V.
17-03-18 03:44:58.394 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.9 um, Read 10 ADC samples: Avg = 29512 (-129.1 uncal um), Error = 0.8 uncal um, Median = 29511 (-129.1 uncal um), StdDev = 6 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 29505 (-129.1 uncal um), Max = 29522 (-129.2 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 03:44:58.394 -07 000000610 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29512, posNoise = 10, negNoise = 7
17-03-18 03:44:58.394 -07 000000610 INF: Z Motor: After move to -0.129902, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:44:58.394 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-18 03:44:58.394 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:44:58.394 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:44:58.394 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:44:58.394 -07 000000012 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:44:58.394 -07 000000467 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 03:44:58.394 -07 000000611 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 03:44:58.394 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 03:44:58.394 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:44:58.394 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 03:44:58.394 -07 000000611 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 03:44:58.394 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 03:44:58.394 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 03:44:58.404 -07 000000611 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 03:44:58.404 -07 000000611 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 03:44:58.404 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 03:44:58.404 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 03:44:58.404 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 03:44:58.404 -07 000000467 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 03:44:58.414 -07 000000611 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-18 03:44:58.414 -07 000000611 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 03:44:58.414 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 410 410 197 197 28554 150\n [Camera]
17-03-18 03:44:58.614 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 03:44:59.024 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 602
17-03-18 03:44:59.024 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 602
17-03-18 03:44:59.024 -07 000000437 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:44:59.024 -07 000000437 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:44:59.024 -07 000000437 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 03:44:59.024 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 602
17-03-18 03:44:59.024 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 602
17-03-18 03:44:59.024 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:44:59.024 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:44:59.024 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start.
17-03-18 03:44:59.214 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28554 795
17-03-18 03:44:59.364 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP turning grn on 945
17-03-18 03:44:59.424 -07 000000437 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 397 ms.
17-03-18 03:44:59.424 -07 000000437 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 03:44:59.424 -07 000000437 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:44:59.424 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 398 ms.
17-03-18 03:44:59.424 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 03:44:59.424 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:44:59.424 -07 000000437 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:44:59.424 -07 000000437 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 03:44:59.424 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:44:59.434 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-18 03:44:59.564 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1142
17-03-18 03:44:59.564 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1142
17-03-18 03:44:59.564 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:44:59.674 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1142
17-03-18 03:44:59.674 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1142
17-03-18 03:44:59.674 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:44:59.684 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:44:59.684 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:44:59.684 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-18 03:44:59.684 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 03:44:59.754 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP 1334
17-03-18 03:44:59.754 -07 000000012 INF: FPGA: Recv CAMDBLSNAP
17-03-18 03:44:59.754 -07 000000610 INF: FPGA: 'CAMDBLSNAP 410 410 197 197 28554 150' command took 2 ms to send, 1334 ms to get response, and 1342 ms overall
17-03-18 03:44:59.754 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 03:44:59.754 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 12 at Y-position 68.205078125, Z-Position -0.129914700738784. ------
17-03-18 03:44:59.754 -07 000000437 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.0426 mm, moving Z to -0.13662 mm
17-03-18 03:44:59.754 -07 000000437 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 03:44:59.764 -07 000000606 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 03:44:59.764 -07 000000012 INF: Y Motor: Entering MoveAbsStepped (target = 110468 steps, sync = True, waitForSettling = True)
17-03-18 03:44:59.764 -07 000000012 INF: Y Motor: Moving to 69.0426 mm, started at 68.2051 mm, delta = 0.8375 mm
17-03-18 03:44:59.764 -07 000000581 INF: FPGA: Recv FOCMRRCUR 
17-03-18 03:44:59.764 -07 000000569 INF: Z Motor: Entering MoveAbsStepped (DAC = 29844, sync = True, waitForSettling = False)
17-03-18 03:44:59.764 -07 000000569 INF: Z Motor: Moving to -0.136617 mm, started at -0.129915 mm, distance = -6.70 um
17-03-18 03:44:59.774 -07 000000569 INF: FPGA: Xmit ZDACW 29844\n [Z Motor]
17-03-18 03:44:59.774 -07 000000606 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:44:59.774 -07 000000581 INF: FPGA: Recv ZDACW
17-03-18 03:44:59.784 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:44:59.784 -07 000000569 INF: FPGA: 'ZDACW 29844' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-18 03:44:59.784 -07 000000581 INF: FPGA: Recv YRDPOS 139685
17-03-18 03:44:59.794 -07 000000606 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 03:44:59.794 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-18 03:44:59.794 -07 000000012 INF: Y Motor: Encoder = 139685 = motor step 109128.9 = 68.2056 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:44:59.794 -07 000000012 INF: Y Motor: Last commanded position = 68.2126 mm (109140.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 03:44:59.794 -07 000000012 INF: Y Motor: Moving 1339 steps-15
17-03-18 03:44:59.804 -07 000000569 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:44:59.804 -07 000000487 INF: FPGA: Recv ZDACR 29844
17-03-18 03:44:59.814 -07 000000569 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 03:44:59.814 -07 000000012 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 03:44:59.814 -07 000000569 INF: Z Motor: MoveAbsStepped took 46 ms (did NOT wait for settling yet))
17-03-18 03:44:59.994 -07 000000487 INF: FPGA: Recv FOCMRRFOC
17-03-18 03:44:59.994 -07 000000606 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 03:45:00.084 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 396 ms.
17-03-18 03:45:00.084 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-18 03:45:00.084 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:45:00.084 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 396 ms.
17-03-18 03:45:00.084 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 03:45:00.084 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:45:00.084 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 03:45:00.084 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 03:45:00.084 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 524 ms.
17-03-18 03:45:00.094 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 415 ms.
17-03-18 03:45:00.184 -07 000000569 INF: FPGA: Recv YMVTILE
17-03-18 03:45:00.184 -07 000000012 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 392 ms overall
17-03-18 03:45:00.234 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:45:00.244 -07 000000569 INF: FPGA: Recv YRDPOS 141368
17-03-18 03:45:00.244 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 03:45:00.244 -07 000000012 INF: Y Motor: Encoder = 141368 = motor step 110443.8 = 69.0273 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:45:00.244 -07 000000012 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-18 03:45:00.244 -07 000000012 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 392 ms, distance = 0.838 mm, average velocity = 2.137 mm/sec
17-03-18 03:45:01.194 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:45:01.194 -07 000000480 INF: FPGA: Recv YRDPOS 141368
17-03-18 03:45:01.204 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:45:01.204 -07 000000012 INF: Y Motor: Encoder = 141368 = motor step 110443.8 = 69.0273 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:45:01.234 -07 000000012 INF: Y Motor: After move to 69.042610, error = -0.015266, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 03:45:01.234 -07 000000012 INF: Y Motor: Position error after settling (table move) = -31 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 03:45:01.234 -07 000000012 INF: Y Motor: Moved to 69.0273 after 1467 ms (table move)
17-03-18 03:45:01.234 -07 000000437 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136617 mm (DAC = 29844)
17-03-18 03:45:01.234 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:45:01.234 -07 000000581 INF: FPGA: Recv ZSGSRD 30565
17-03-18 03:45:01.244 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 03:45:01.244 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:45:01.244 -07 000000480 INF: FPGA: Recv ZSGSRD 30554
17-03-18 03:45:01.254 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:45:01.254 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:45:01.254 -07 000000012 INF: FPGA: Recv ZSGSRD 30560
17-03-18 03:45:01.264 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:45:01.264 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:45:01.264 -07 000000467 INF: FPGA: Recv ZSGSRD 30557
17-03-18 03:45:01.274 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:45:01.274 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:45:01.274 -07 000000569 INF: FPGA: Recv ZSGSRD 30563
17-03-18 03:45:01.284 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:45:01.284 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:45:01.284 -07 000000606 INF: FPGA: Recv ZSGSRD 30555
17-03-18 03:45:01.294 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:45:01.294 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:45:01.294 -07 000000569 INF: FPGA: Recv ZSGSRD 30552
17-03-18 03:45:01.304 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:45:01.304 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:45:01.304 -07 000000480 INF: FPGA: Recv ZSGSRD 30557
17-03-18 03:45:01.314 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:45:01.314 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:45:01.314 -07 000000606 INF: FPGA: Recv ZSGSRD 30554
17-03-18 03:45:01.324 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:45:01.324 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:45:01.324 -07 000000487 INF: FPGA: Recv ZSGSRD 30564
17-03-18 03:45:01.334 -07 000000437 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:45:01.334 -07 000000437 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:45:01.334 -07 000000012 INF: FPGA: Recv ZPIEZORD 26346
17-03-18 03:45:01.344 -07 000000437 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:45:01.344 -07 000000437 INF: Z Motor: Piezo is near 36.3 V (nominally 0 to 100 V), expect near 45.5 V, since DAC is at 4.554 V. Piezo Error = -9.3 V.
17-03-18 03:45:01.344 -07 000000437 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.6 um, Read 10 ADC samples: Avg = 30558 (-135.8 uncal um), Error = 0.8 uncal um, Median = 30557 (-135.8 uncal um), StdDev = 5 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 30552 (-135.8 uncal um), Max = 30565 (-135.9 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 03:45:01.344 -07 000000437 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30558, posNoise = 7, negNoise = 6
17-03-18 03:45:01.344 -07 000000437 INF: Z Motor: After move to -0.136617, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:45:01.344 -07 000000437 INF: Z Motor: Settle wait time = 1469 ms, measure time = 107 ms (allowed 150 ms), total time = 1576 ms
17-03-18 03:45:01.344 -07 000000437 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-18 03:45:01.394 -07 000000437 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1630 ms
17-03-18 03:45:01.394 -07 000000437 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 03:45:01.394 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:45:01.394 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:45:01.394 -07 000000487 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:45:01.394 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:45:01.394 -07 000000012 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 03:45:01.394 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:45:01.394 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 03:45:01.394 -07 000000012 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 03:45:01.394 -07 000000012 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 03:45:01.404 -07 000000012 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 03:45:01.414 -07 000000012 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-18 03:45:01.414 -07 000000012 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-18 03:45:01.414 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 03:45:01.464 -07 000000606 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 03:45:01.604 -07 000000606 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 03:45:01.604 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 115. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1671, R2=1741, Total=3412. Warn if over 250 bubbles per interval.
17-03-18 03:45:01.764 -07 000000012 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 03:45:01.764 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 03:45:01.764 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 03:45:01.764 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2199785120, 0x0, 559484976) start.
17-03-18 03:45:01.794 -07 000000467 INF: FPGA: Recv @CAMSNAP 380
17-03-18 03:45:01.804 -07 000000581 INF: FPGA: Recv CAMSNAP
17-03-18 03:45:01.804 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 380 ms to get response, and 384 ms overall
17-03-18 03:45:01.874 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2199785120, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 03:45:01.874 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:45:01.874 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 03:45:01.884 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 03:45:01.904 -07 000000467 INF: Autofocus start
17-03-18 03:45:01.904 -07 000000467 INF: MeasureProfile start
17-03-18 03:45:01.904 -07 000000487 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 03:45:01.904 -07 000000606 INF: FPGA: Recv FOCMRRCUR 
17-03-18 03:45:01.914 -07 000000487 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 03:45:01.914 -07 000000487 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 03:45:01.914 -07 000000467 INF: MeasureProfile done
17-03-18 03:45:01.914 -07 000000467 INF: X=-16  Z correction [um]=-0.08128808
17-03-18 03:45:01.914 -07 000000467 INF: Autofocus finished
17-03-18 03:45:02.114 -07 000000581 INF: FPGA: Recv FOCMRRIMG
17-03-18 03:45:02.114 -07 000000487 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 03:45:02.114 -07 000000610 INF: ------------ Scan Snapping tile 12 at Y-position 69.02734375, Z-position -0.136634426639066. ----------
17-03-18 03:45:02.114 -07 000000610 INF: Cycle	116	Tile	12	Exposure Settings		A	410	G	197	T	197	C	410
17-03-18 03:45:02.124 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28339, sync = True, waitForSettling = True)
17-03-18 03:45:02.124 -07 000000610 INF: Z Motor: Moving to -0.129728 mm, started at -0.136634 mm, distance = 6.91 um
17-03-18 03:45:02.124 -07 000000610 INF: FPGA: Xmit ZDACW 28339\n [Z Motor]
17-03-18 03:45:02.124 -07 000000012 INF: FPGA: Recv ZDACW
17-03-18 03:45:02.134 -07 000000610 INF: FPGA: 'ZDACW 28339' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 03:45:02.134 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:45:02.134 -07 000000569 INF: FPGA: Recv ZDACR 28339
17-03-18 03:45:02.144 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 03:45:02.144 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 03:45:02.294 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:45:02.294 -07 000000606 INF: FPGA: Recv ZSGSRD 29486
17-03-18 03:45:02.304 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:45:02.304 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:45:02.304 -07 000000569 INF: FPGA: Recv ZSGSRD 29482
17-03-18 03:45:02.314 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:45:02.314 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:45:02.314 -07 000000581 INF: FPGA: Recv ZSGSRD 29482
17-03-18 03:45:02.324 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:45:02.324 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:45:02.324 -07 000000467 INF: FPGA: Recv ZSGSRD 29485
17-03-18 03:45:02.334 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:45:02.334 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:45:02.334 -07 000000487 INF: FPGA: Recv ZSGSRD 29489
17-03-18 03:45:02.344 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:45:02.344 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:45:02.344 -07 000000012 INF: FPGA: Recv ZSGSRD 29488
17-03-18 03:45:02.354 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:45:02.354 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:45:02.354 -07 000000581 INF: FPGA: Recv ZSGSRD 29481
17-03-18 03:45:02.364 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:45:02.364 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:45:02.364 -07 000000012 INF: FPGA: Recv ZSGSRD 29493
17-03-18 03:45:02.374 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:45:02.374 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:45:02.374 -07 000000437 INF: FPGA: Recv ZSGSRD 29482
17-03-18 03:45:02.384 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:45:02.384 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:45:02.384 -07 000000569 INF: FPGA: Recv ZSGSRD 29485
17-03-18 03:45:02.394 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:45:02.394 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:45:02.394 -07 000000487 INF: FPGA: Recv ZPIEZORD 24958
17-03-18 03:45:02.404 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:45:02.404 -07 000000610 INF: Z Motor: Piezo is near 33.3 V (nominally 0 to 100 V), expect near 43.2 V, since DAC is at 4.324 V. Piezo Error = -9.9 V.
17-03-18 03:45:02.404 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.7 um, Read 10 ADC samples: Avg = 29485 (-129.0 uncal um), Error = 0.8 uncal um, Median = 29485 (-129.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29481 (-128.9 uncal um), Max = 29493 (-129.0 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 03:45:02.404 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29485, posNoise = 8, negNoise = 4
17-03-18 03:45:02.404 -07 000000610 INF: Z Motor: After move to -0.129728, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:45:02.404 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 03:45:02.404 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:45:02.404 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:45:02.404 -07 000000467 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 03:45:02.404 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:45:02.404 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:45:02.404 -07 000000606 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:45:02.404 -07 000000487 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 03:45:02.404 -07 000000487 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 03:45:02.404 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 03:45:02.404 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 03:45:02.404 -07 000000487 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 03:45:02.404 -07 000000487 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 03:45:02.404 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 03:45:02.414 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 03:45:02.414 -07 000000487 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 03:45:02.414 -07 000000487 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 03:45:02.424 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 14 ms.
17-03-18 03:45:02.424 -07 000000467 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 19 ms.
17-03-18 03:45:02.424 -07 000000487 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms.
17-03-18 03:45:02.424 -07 000000487 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 19 ms.
17-03-18 03:45:02.424 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 410 410 197 197 28516 150\n [Camera]
17-03-18 03:45:02.624 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 03:45:03.034 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 602
17-03-18 03:45:03.034 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 602
17-03-18 03:45:03.034 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:45:03.034 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:45:03.034 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 03:45:03.044 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 602
17-03-18 03:45:03.044 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 602
17-03-18 03:45:03.044 -07 000000581 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:45:03.044 -07 000000581 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:45:03.044 -07 000000581 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start.
17-03-18 03:45:03.144 -07 000000382 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 116, FrontChillerTemperature: 4.000345,
17-03-18 03:45:03.224 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28516 795
17-03-18 03:45:03.374 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP turning grn on 945
17-03-18 03:45:03.414 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 378 ms.
17-03-18 03:45:03.414 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-18 03:45:03.414 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:45:03.414 -07 000000581 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 376 ms.
17-03-18 03:45:03.414 -07 000000581 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-18 03:45:03.414 -07 000000581 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:45:03.424 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 03:45:03.424 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-18 03:45:03.424 -07 000000581 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 03:45:03.434 -07 000000581 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-18 03:45:03.574 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1142
17-03-18 03:45:03.574 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1142
17-03-18 03:45:03.574 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:45:03.574 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1142
17-03-18 03:45:03.574 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1142
17-03-18 03:45:03.584 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:45:03.584 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:45:03.584 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-18 03:45:03.584 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:45:03.584 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 03:45:03.764 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP 1335
17-03-18 03:45:03.764 -07 000000581 INF: FPGA: Recv CAMDBLSNAP
17-03-18 03:45:03.764 -07 000000610 INF: FPGA: 'CAMDBLSNAP 410 410 197 197 28516 150' command took 2 ms to send, 1338 ms to get response, and 1342 ms overall
17-03-18 03:45:03.774 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 03:45:03.774 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 13 at Y-position 69.02734375, Z-Position -0.129741247010957. ------
17-03-18 03:45:03.774 -07 000000606 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 03:45:03.774 -07 000000012 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.8726 mm, moving Z to -0.13617 mm
17-03-18 03:45:03.774 -07 000000012 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 03:45:03.774 -07 000000462 INF: FPGA: Recv FOCMRRCUR 
17-03-18 03:45:03.774 -07 000000382 INF: Y Motor: Entering MoveAbsStepped (target = 111796 steps, sync = True, waitForSettling = True)
17-03-18 03:45:03.774 -07 000000382 INF: Y Motor: Moving to 69.8726 mm, started at 69.0273 mm, delta = 0.8453 mm
17-03-18 03:45:03.774 -07 000000480 INF: Z Motor: Entering MoveAbsStepped (DAC = 29747, sync = True, waitForSettling = False)
17-03-18 03:45:03.774 -07 000000480 INF: Z Motor: Moving to -0.136173 mm, started at -0.129741 mm, distance = -6.43 um
17-03-18 03:45:03.784 -07 000000606 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 03:45:03.784 -07 000000480 INF: FPGA: Xmit ZDACW 29747\n [Z Motor]
17-03-18 03:45:03.784 -07 000000581 INF: FPGA: Recv ZDACW
17-03-18 03:45:03.794 -07 000000480 INF: FPGA: 'ZDACW 29747' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-18 03:45:03.794 -07 000000606 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 03:45:03.804 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:45:03.804 -07 000000625 INF: FPGA: Recv YRDPOS 141368
17-03-18 03:45:03.814 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 31 ms overall
17-03-18 03:45:03.814 -07 000000480 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:45:03.814 -07 000000382 INF: Y Motor: Encoder = 141368 = motor step 110443.8 = 69.0273 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:45:03.814 -07 000000382 INF: Y Motor: Last commanded position = 69.0426 mm (110468.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 03:45:03.814 -07 000000382 INF: Y Motor: Moving 1352 steps-31
17-03-18 03:45:03.814 -07 000000487 INF: FPGA: Recv ZDACR 29747
17-03-18 03:45:03.824 -07 000000480 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 03:45:03.824 -07 000000480 INF: Z Motor: MoveAbsStepped took 41 ms (did NOT wait for settling yet))
17-03-18 03:45:03.824 -07 000000382 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 03:45:03.964 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 379 ms.
17-03-18 03:45:03.964 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-18 03:45:03.964 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:45:03.974 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:45:03.974 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 386 ms.
17-03-18 03:45:03.974 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-18 03:45:03.974 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:45:03.974 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:45:03.974 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 03:45:03.974 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 03:45:03.994 -07 000000467 INF: FPGA: Recv FOCMRRFOC
17-03-18 03:45:03.994 -07 000000606 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 212 ms overall
17-03-18 03:45:04.194 -07 000000579 INF: FPGA: Recv YMVTILE
17-03-18 03:45:04.194 -07 000000382 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-18 03:45:04.244 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:45:04.254 -07 000000606 INF: FPGA: Recv YRDPOS 143080
17-03-18 03:45:04.254 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 5 ms overall
17-03-18 03:45:04.254 -07 000000382 INF: Y Motor: Encoder = 143080 = motor step 111781.3 = 69.8633 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:45:04.254 -07 000000382 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm)
17-03-18 03:45:04.254 -07 000000382 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.845 mm, average velocity = 2.179 mm/sec
17-03-18 03:45:05.204 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:45:05.204 -07 000000606 INF: FPGA: Recv YRDPOS 143080
17-03-18 03:45:05.214 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:45:05.214 -07 000000382 INF: Y Motor: Encoder = 143080 = motor step 111781.3 = 69.8633 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:45:05.254 -07 000000382 INF: Y Motor: After move to 69.872612, error = -0.009331, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 03:45:05.254 -07 000000382 INF: Y Motor: Position error after settling (table move) = -19 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 03:45:05.254 -07 000000382 INF: Y Motor: Moved to 69.8633 after 1479 ms (table move)
17-03-18 03:45:05.264 -07 000000012 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136173 mm (DAC = 29747)
17-03-18 03:45:05.264 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:45:05.264 -07 000000437 INF: FPGA: Recv ZSGSRD 30487
17-03-18 03:45:05.274 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 03:45:05.274 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:45:05.274 -07 000000437 INF: FPGA: Recv ZSGSRD 30490
17-03-18 03:45:05.284 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:45:05.284 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:45:05.284 -07 000000437 INF: FPGA: Recv ZSGSRD 30482
17-03-18 03:45:05.294 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:45:05.294 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:45:05.294 -07 000000382 INF: FPGA: Recv ZSGSRD 30487
17-03-18 03:45:05.304 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:45:05.304 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:45:05.304 -07 000000382 INF: FPGA: Recv ZSGSRD 30479
17-03-18 03:45:05.314 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:45:05.314 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:45:05.314 -07 000000462 INF: FPGA: Recv ZSGSRD 30493
17-03-18 03:45:05.324 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:45:05.324 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:45:05.324 -07 000000382 INF: FPGA: Recv ZSGSRD 30490
17-03-18 03:45:05.334 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:45:05.334 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:45:05.334 -07 000000569 INF: FPGA: Recv ZSGSRD 30488
17-03-18 03:45:05.344 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:45:05.344 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:45:05.344 -07 000000382 INF: FPGA: Recv ZSGSRD 30496
17-03-18 03:45:05.354 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:45:05.354 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:45:05.354 -07 000000480 INF: FPGA: Recv ZSGSRD 30491
17-03-18 03:45:05.364 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 03:45:05.364 -07 000000012 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:45:05.364 -07 000000462 INF: FPGA: Recv ZPIEZORD 26305
17-03-18 03:45:05.374 -07 000000012 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:45:05.374 -07 000000012 INF: Z Motor: Piezo is near 36.2 V (nominally 0 to 100 V), expect near 45.4 V, since DAC is at 4.539 V. Piezo Error = -9.2 V.
17-03-18 03:45:05.374 -07 000000012 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.2 um, Read 10 ADC samples: Avg = 30488 (-135.4 uncal um), Error = 0.8 uncal um, Median = 30489 (-135.4 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 30479 (-135.3 uncal um), Max = 30496 (-135.4 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-18 03:45:05.374 -07 000000012 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30488, posNoise = 8, negNoise = 9
17-03-18 03:45:05.374 -07 000000012 INF: Z Motor: After move to -0.136173, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:45:05.374 -07 000000012 INF: Z Motor: Settle wait time = 1483 ms, measure time = 108 ms (allowed 150 ms), total time = 1591 ms
17-03-18 03:45:05.374 -07 000000012 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-18 03:45:05.424 -07 000000012 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1644 ms
17-03-18 03:45:05.424 -07 000000012 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 03:45:05.424 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:45:05.424 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:45:05.424 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:45:05.424 -07 000000625 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 03:45:05.424 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:45:05.424 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:45:05.424 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 03:45:05.424 -07 000000625 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 03:45:05.424 -07 000000625 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 03:45:05.424 -07 000000625 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 03:45:05.434 -07 000000625 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 03:45:05.434 -07 000000625 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-18 03:45:05.444 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 03:45:05.484 -07 000000487 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 03:45:05.784 -07 000000569 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 03:45:05.784 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 03:45:05.784 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 03:45:05.784 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2199785120, 0x0, 559484976) start.
17-03-18 03:45:05.824 -07 000000569 INF: FPGA: Recv @CAMSNAP 380
17-03-18 03:45:05.824 -07 000000382 INF: FPGA: Recv CAMSNAP
17-03-18 03:45:05.824 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 375 ms to get response, and 384 ms overall
17-03-18 03:45:05.904 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2199785120, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 03:45:05.904 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:45:05.904 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 03:45:05.904 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-18 03:45:05.924 -07 000000012 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 03:45:05.924 -07 000000625 INF: Autofocus start
17-03-18 03:45:05.924 -07 000000625 INF: MeasureProfile start
17-03-18 03:45:05.924 -07 000000462 INF: FPGA: Recv FOCMRRCUR 
17-03-18 03:45:05.934 -07 000000012 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 03:45:05.934 -07 000000012 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 03:45:05.944 -07 000000625 INF: MeasureProfile done
17-03-18 03:45:05.944 -07 000000625 INF: X=0  Z correction [um]=-0.02394831
17-03-18 03:45:05.944 -07 000000625 INF: Autofocus finished
17-03-18 03:45:06.134 -07 000000569 INF: FPGA: Recv FOCMRRIMG
17-03-18 03:45:06.134 -07 000000012 INF: FPGA: 'FOCMRRIMG' command took 1 ms to send, 194 ms to get response, and 204 ms overall
17-03-18 03:45:06.134 -07 000000610 INF: ------------ Scan Snapping tile 13 at Y-position 69.86328125, Z-position -0.136184731789143. ----------
17-03-18 03:45:06.134 -07 000000610 INF: Cycle	116	Tile	13	Exposure Settings		A	410	G	197	T	197	C	410
17-03-18 03:45:06.144 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28255, sync = True, waitForSettling = True)
17-03-18 03:45:06.144 -07 000000610 INF: Z Motor: Moving to -0.129343 mm, started at -0.136185 mm, distance = 6.84 um
17-03-18 03:45:06.144 -07 000000610 INF: FPGA: Xmit ZDACW 28255\n [Z Motor]
17-03-18 03:45:06.154 -07 000000480 INF: FPGA: Recv ZDACW
17-03-18 03:45:06.154 -07 000000610 INF: FPGA: 'ZDACW 28255' command took 0 ms to send, 2 ms to get response, and 10 ms overall
17-03-18 03:45:06.154 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:45:06.154 -07 000000487 INF: FPGA: Recv ZDACR 28255
17-03-18 03:45:06.164 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 03:45:06.164 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 03:45:06.324 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:45:06.324 -07 000000382 INF: FPGA: Recv ZSGSRD 29428
17-03-18 03:45:06.334 -07 000000610 INF: FPGA: 'ZSGSRD' command took 2 ms to send, 0 ms to get response, and 20 ms overall
17-03-18 03:45:06.334 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:45:06.334 -07 000000462 INF: FPGA: Recv ZSGSRD 29432
17-03-18 03:45:06.344 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 03:45:06.344 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:45:06.344 -07 000000487 INF: FPGA: Recv ZSGSRD 29420
17-03-18 03:45:06.354 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:45:06.354 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:45:06.354 -07 000000625 INF: FPGA: Recv ZSGSRD 29422
17-03-18 03:45:06.364 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:45:06.364 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:45:06.364 -07 000000462 INF: FPGA: Recv ZSGSRD 29425
17-03-18 03:45:06.374 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:45:06.374 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:45:06.374 -07 000000480 INF: FPGA: Recv ZSGSRD 29429
17-03-18 03:45:06.384 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:45:06.384 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:45:06.384 -07 000000012 INF: FPGA: Recv ZSGSRD 29428
17-03-18 03:45:06.394 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:45:06.394 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:45:06.394 -07 000000462 INF: FPGA: Recv ZSGSRD 29425
17-03-18 03:45:06.404 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:45:06.404 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:45:06.404 -07 000000012 INF: FPGA: Recv ZSGSRD 29419
17-03-18 03:45:06.414 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:45:06.414 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:45:06.414 -07 000000625 INF: FPGA: Recv ZSGSRD 29420
17-03-18 03:45:06.424 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:45:06.424 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:45:06.424 -07 000000012 INF: FPGA: Recv ZPIEZORD 24877
17-03-18 03:45:06.434 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:45:06.434 -07 000000610 INF: Z Motor: Piezo is near 33.1 V (nominally 0 to 100 V), expect near 43.1 V, since DAC is at 4.311 V. Piezo Error = -10.0 V.
17-03-18 03:45:06.434 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.3 um, Read 10 ADC samples: Avg = 29425 (-128.6 uncal um), Error = 0.8 uncal um, Median = 29425 (-128.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 29419 (-128.5 uncal um), Max = 29432 (-128.6 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 03:45:06.434 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29425, posNoise = 7, negNoise = 6
17-03-18 03:45:06.434 -07 000000610 INF: Z Motor: After move to -0.129343, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:45:06.434 -07 000000610 INF: Z Motor: MoveAbsStepped took 289 ms)
17-03-18 03:45:06.434 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:45:06.434 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:45:06.434 -07 000000625 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:45:06.434 -07 000000487 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 03:45:06.434 -07 000000487 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 03:45:06.434 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 03:45:06.434 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:45:06.434 -07 000000480 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:45:06.434 -07 000000487 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 03:45:06.434 -07 000000487 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 03:45:06.434 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 03:45:06.434 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 03:45:06.444 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 03:45:06.444 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 03:45:06.444 -07 000000487 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 03:45:06.444 -07 000000487 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 03:45:06.454 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 11 ms.
17-03-18 03:45:06.454 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 03:45:06.454 -07 000000487 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 13 ms.
17-03-18 03:45:06.454 -07 000000487 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 18 ms.
17-03-18 03:45:06.454 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 410 410 197 197 28431 150\n [Camera]
17-03-18 03:45:06.604 -07 000000382 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 03:45:06.604 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 115. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1671, R2=1741, Total=3412. Warn if over 250 bubbles per interval.
17-03-18 03:45:06.654 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 03:45:07.064 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 602
17-03-18 03:45:07.064 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 602
17-03-18 03:45:07.064 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:45:07.064 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:45:07.064 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 03:45:07.064 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 602
17-03-18 03:45:07.064 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 602
17-03-18 03:45:07.064 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:45:07.064 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:45:07.064 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start.
17-03-18 03:45:07.254 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28431 795
17-03-18 03:45:07.404 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP turning grn on 945
17-03-18 03:45:07.464 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 396 ms.
17-03-18 03:45:07.464 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 03:45:07.464 -07 000000625 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:45:07.464 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 394 ms.
17-03-18 03:45:07.464 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 03:45:07.464 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:45:07.464 -07 000000625 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 03:45:07.464 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 03:45:07.464 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 03:45:07.474 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 406 ms.
17-03-18 03:45:07.604 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1142
17-03-18 03:45:07.604 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1142
17-03-18 03:45:07.604 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:45:07.724 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1142
17-03-18 03:45:07.724 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1142
17-03-18 03:45:07.724 -07 000000474 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:45:07.724 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:45:07.724 -07 000000474 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:45:07.724 -07 000000474 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 03:45:07.724 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-18 03:45:07.794 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP 1335
17-03-18 03:45:07.794 -07 000000480 INF: FPGA: Recv CAMDBLSNAP
17-03-18 03:45:07.794 -07 000000610 INF: FPGA: 'CAMDBLSNAP 410 410 197 197 28431 150' command took 2 ms to send, 1337 ms to get response, and 1342 ms overall
17-03-18 03:45:07.794 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 03:45:07.794 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 14 at Y-position 69.86328125, Z-Position -0.129355794282451. ------
17-03-18 03:45:07.804 -07 000000625 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 03:45:07.804 -07 000000512 INF: Y Motor: MoveYZ optimized starting. Moving Y to 70.7026 mm, moving Z to -0.13528 mm
17-03-18 03:45:07.804 -07 000000512 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 03:45:07.804 -07 000000455 INF: Y Motor: Entering MoveAbsStepped (target = 113124 steps, sync = True, waitForSettling = True)
17-03-18 03:45:07.804 -07 000000455 INF: Y Motor: Moving to 70.7026 mm, started at 69.8633 mm, delta = 0.8393 mm
17-03-18 03:45:07.804 -07 000000487 INF: Z Motor: Entering MoveAbsStepped (DAC = 29551, sync = True, waitForSettling = False)
17-03-18 03:45:07.804 -07 000000487 INF: Z Motor: Moving to -0.135276 mm, started at -0.129356 mm, distance = -5.92 um
17-03-18 03:45:07.804 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-18 03:45:07.814 -07 000000625 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 03:45:07.814 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:45:07.814 -07 000000382 INF: FPGA: Recv YRDPOS 143081
17-03-18 03:45:07.824 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-18 03:45:07.824 -07 000000487 INF: FPGA: Xmit ZDACW 29551\n [Z Motor]
17-03-18 03:45:07.824 -07 000000455 INF: Y Motor: Encoder = 143081 = motor step 111782.0 = 69.8638 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:45:07.824 -07 000000012 INF: FPGA: Recv ZDACW
17-03-18 03:45:07.824 -07 000000455 INF: Y Motor: Last commanded position = 69.8726 mm (111796.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 03:45:07.824 -07 000000455 INF: Y Motor: Moving 1342 steps-19
17-03-18 03:45:07.834 -07 000000625 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 03:45:07.834 -07 000000487 INF: FPGA: 'ZDACW 29551' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-18 03:45:07.844 -07 000000455 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 03:45:07.854 -07 000000487 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:45:07.854 -07 000000611 INF: FPGA: Recv ZDACR 29551
17-03-18 03:45:07.864 -07 000000487 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 03:45:07.864 -07 000000487 INF: Z Motor: MoveAbsStepped took 53 ms (did NOT wait for settling yet))
17-03-18 03:45:08.034 -07 000000611 INF: FPGA: Recv FOCMRRFOC
17-03-18 03:45:08.034 -07 000000625 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 03:45:08.124 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 398 ms.
17-03-18 03:45:08.124 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 03:45:08.124 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:45:08.124 -07 000000474 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 398 ms.
17-03-18 03:45:08.124 -07 000000474 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 03:45:08.124 -07 000000474 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:45:08.134 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 03:45:08.134 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 525 ms.
17-03-18 03:45:08.134 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 03:45:08.144 -07 000000474 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 418 ms.
17-03-18 03:45:08.214 -07 000000012 INF: FPGA: Recv YMVTILE
17-03-18 03:45:08.214 -07 000000455 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 392 ms overall
17-03-18 03:45:08.264 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:45:08.264 -07 000000382 INF: FPGA: Recv YRDPOS 144770
17-03-18 03:45:08.274 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 03:45:08.274 -07 000000455 INF: Y Motor: Encoder = 144770 = motor step 113101.6 = 70.6885 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:45:08.274 -07 000000455 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-18 03:45:08.274 -07 000000455 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 392 ms, distance = 0.839 mm, average velocity = 2.141 mm/sec
17-03-18 03:45:08.504 -07 000000608 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 116, FrontChillerTemperature: 3.978563,
17-03-18 03:45:09.224 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:45:09.224 -07 000000608 INF: FPGA: Recv YRDPOS 144770
17-03-18 03:45:09.234 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:45:09.234 -07 000000455 INF: Y Motor: Encoder = 144770 = motor step 113101.6 = 70.6885 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:45:09.254 -07 000000455 INF: Y Motor: After move to 70.702606, error = -0.014130, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 03:45:09.254 -07 000000455 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 03:45:09.264 -07 000000455 INF: Y Motor: Moved to 70.6885 after 1453 ms (table move)
17-03-18 03:45:09.264 -07 000000512 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135276 mm (DAC = 29551)
17-03-18 03:45:09.264 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:45:09.264 -07 000000608 INF: FPGA: Recv ZSGSRD 30357
17-03-18 03:45:09.274 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 03:45:09.274 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:45:09.274 -07 000000608 INF: FPGA: Recv ZSGSRD 30352
17-03-18 03:45:09.284 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:45:09.284 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:45:09.284 -07 000000455 INF: FPGA: Recv ZSGSRD 30351
17-03-18 03:45:09.294 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:45:09.294 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:45:09.294 -07 000000608 INF: FPGA: Recv ZSGSRD 30348
17-03-18 03:45:09.304 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:45:09.304 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:45:09.304 -07 000000455 INF: FPGA: Recv ZSGSRD 30347
17-03-18 03:45:09.314 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:45:09.314 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:45:09.314 -07 000000608 INF: FPGA: Recv ZSGSRD 30348
17-03-18 03:45:09.324 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:45:09.324 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:45:09.324 -07 000000455 INF: FPGA: Recv ZSGSRD 30351
17-03-18 03:45:09.334 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:45:09.334 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:45:09.334 -07 000000479 INF: FPGA: Recv ZSGSRD 30342
17-03-18 03:45:09.344 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:45:09.344 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:45:09.344 -07 000000455 INF: FPGA: Recv ZSGSRD 30343
17-03-18 03:45:09.354 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:45:09.354 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:45:09.354 -07 000000479 INF: FPGA: Recv ZSGSRD 30344
17-03-18 03:45:09.364 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:45:09.364 -07 000000512 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:45:09.364 -07 000000455 INF: FPGA: Recv ZPIEZORD 26140
17-03-18 03:45:09.374 -07 000000512 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:45:09.374 -07 000000512 INF: Z Motor: Piezo is near 35.8 V (nominally 0 to 100 V), expect near 45.1 V, since DAC is at 4.509 V. Piezo Error = -9.3 V.
17-03-18 03:45:09.374 -07 000000512 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.3 um, Read 10 ADC samples: Avg = 30348 (-134.5 uncal um), Error = 0.8 uncal um, Median = 30348 (-134.5 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 30342 (-134.5 uncal um), Max = 30357 (-134.6 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 03:45:09.374 -07 000000512 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30348, posNoise = 9, negNoise = 6
17-03-18 03:45:09.374 -07 000000512 INF: Z Motor: After move to -0.135276, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:45:09.374 -07 000000512 INF: Z Motor: Settle wait time = 1456 ms, measure time = 107 ms (allowed 150 ms), total time = 1563 ms
17-03-18 03:45:09.374 -07 000000512 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-18 03:45:09.424 -07 000000512 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1616 ms
17-03-18 03:45:09.424 -07 000000512 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 03:45:09.424 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:45:09.424 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:45:09.424 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:45:09.424 -07 000000611 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:45:09.424 -07 000000382 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 03:45:09.424 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:45:09.424 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 03:45:09.424 -07 000000382 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 03:45:09.434 -07 000000382 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 03:45:09.434 -07 000000382 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 03:45:09.434 -07 000000382 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 8 ms.
17-03-18 03:45:09.434 -07 000000382 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 13 ms.
17-03-18 03:45:09.444 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 03:45:09.484 -07 000000512 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 03:45:09.784 -07 000000479 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 03:45:09.784 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 03:45:09.784 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 03:45:09.784 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2199785120, 0x0, 559484976) start.
17-03-18 03:45:09.824 -07 000000561 INF: FPGA: Recv @CAMSNAP 380
17-03-18 03:45:09.824 -07 000000569 INF: FPGA: Recv CAMSNAP
17-03-18 03:45:09.824 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 03:45:09.904 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2199785120, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 03:45:09.904 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:45:09.904 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 03:45:09.904 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 03:45:09.924 -07 000000479 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 03:45:09.924 -07 000000608 INF: Autofocus start
17-03-18 03:45:09.924 -07 000000608 INF: MeasureProfile start
17-03-18 03:45:09.924 -07 000000480 INF: FPGA: Recv FOCMRRCUR 
17-03-18 03:45:09.934 -07 000000479 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 03:45:09.934 -07 000000479 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 03:45:09.934 -07 000000608 INF: MeasureProfile done
17-03-18 03:45:09.934 -07 000000608 INF: X=112  Z correction [um]=0.5148152
17-03-18 03:45:09.934 -07 000000608 INF: Autofocus finished
17-03-18 03:45:10.134 -07 000000625 INF: FPGA: Recv FOCMRRIMG
17-03-18 03:45:10.134 -07 000000479 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 03:45:10.134 -07 000000610 INF: ------------ Scan Snapping tile 14 at Y-position 70.6884765625, Z-position -0.135285342089297. ----------
17-03-18 03:45:10.144 -07 000000610 INF: Cycle	116	Tile	14	Exposure Settings		A	410	G	197	T	197	C	410
17-03-18 03:45:10.144 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28176, sync = True, waitForSettling = True)
17-03-18 03:45:10.144 -07 000000610 INF: Z Motor: Moving to -0.128981 mm, started at -0.135285 mm, distance = 6.30 um
17-03-18 03:45:10.144 -07 000000610 INF: FPGA: Xmit ZDACW 28176\n [Z Motor]
17-03-18 03:45:10.154 -07 000000625 INF: FPGA: Recv ZDACW
17-03-18 03:45:10.154 -07 000000610 INF: FPGA: 'ZDACW 28176' command took 0 ms to send, 3 ms to get response, and 9 ms overall
17-03-18 03:45:10.154 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:45:10.154 -07 000000480 INF: FPGA: Recv ZDACR 28176
17-03-18 03:45:10.164 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 03:45:10.164 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 03:45:10.314 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:45:10.314 -07 000000512 INF: FPGA: Recv ZSGSRD 29367
17-03-18 03:45:10.324 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:45:10.324 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:45:10.324 -07 000000608 INF: FPGA: Recv ZSGSRD 29370
17-03-18 03:45:10.334 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:45:10.334 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:45:10.334 -07 000000462 INF: FPGA: Recv ZSGSRD 29365
17-03-18 03:45:10.344 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:45:10.344 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:45:10.344 -07 000000608 INF: FPGA: Recv ZSGSRD 29367
17-03-18 03:45:10.354 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:45:10.354 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:45:10.354 -07 000000474 INF: FPGA: Recv ZSGSRD 29365
17-03-18 03:45:10.364 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:45:10.364 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:45:10.364 -07 000000608 INF: FPGA: Recv ZSGSRD 29375
17-03-18 03:45:10.374 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:45:10.374 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:45:10.374 -07 000000625 INF: FPGA: Recv ZSGSRD 29372
17-03-18 03:45:10.384 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:45:10.384 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:45:10.384 -07 000000512 INF: FPGA: Recv ZSGSRD 29366
17-03-18 03:45:10.394 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:45:10.394 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:45:10.394 -07 000000608 INF: FPGA: Recv ZSGSRD 29370
17-03-18 03:45:10.404 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:45:10.404 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:45:10.404 -07 000000462 INF: FPGA: Recv ZSGSRD 29367
17-03-18 03:45:10.414 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:45:10.414 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:45:10.414 -07 000000611 INF: FPGA: Recv ZPIEZORD 24837
17-03-18 03:45:10.424 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:45:10.424 -07 000000610 INF: Z Motor: Piezo is near 33.1 V (nominally 0 to 100 V), expect near 43.0 V, since DAC is at 4.299 V. Piezo Error = -9.9 V.
17-03-18 03:45:10.424 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.0 um, Read 10 ADC samples: Avg = 29368 (-128.2 uncal um), Error = 0.8 uncal um, Median = 29367 (-128.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29365 (-128.2 uncal um), Max = 29375 (-128.3 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 03:45:10.424 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29368, posNoise = 7, negNoise = 3
17-03-18 03:45:10.424 -07 000000610 INF: Z Motor: After move to -0.128981, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:45:10.424 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 03:45:10.424 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:45:10.424 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:45:10.434 -07 000000608 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:45:10.434 -07 000000625 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:45:10.434 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 03:45:10.434 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 03:45:10.434 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 03:45:10.434 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 03:45:10.434 -07 000000611 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 03:45:10.434 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:45:10.434 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 03:45:10.434 -07 000000611 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 03:45:10.434 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 03:45:10.434 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 03:45:10.434 -07 000000611 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 03:45:10.434 -07 000000611 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 03:45:10.444 -07 000000611 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 03:45:10.444 -07 000000611 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 03:45:10.444 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 03:45:10.444 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 03:45:10.444 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 410 410 197 197 28353 150\n [Camera]
17-03-18 03:45:10.654 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP turning red on 199
17-03-18 03:45:11.054 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 602
17-03-18 03:45:11.054 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 602
17-03-18 03:45:11.064 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:45:11.064 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:45:11.064 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 03:45:11.064 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 602
17-03-18 03:45:11.064 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 602
17-03-18 03:45:11.064 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:45:11.064 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:45:11.064 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start.
17-03-18 03:45:11.254 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28353 800
17-03-18 03:45:11.404 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP turning grn on 945
17-03-18 03:45:11.434 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 375 ms.
17-03-18 03:45:11.434 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-18 03:45:11.544 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:45:11.554 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 488 ms.
17-03-18 03:45:11.554 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 489 ms.
17-03-18 03:45:11.554 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:45:11.554 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 03:45:11.554 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 03:45:11.554 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 495 ms.
17-03-18 03:45:11.564 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 499 ms.
17-03-18 03:45:11.594 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1142
17-03-18 03:45:11.594 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1142
17-03-18 03:45:11.594 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:45:11.604 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1142
17-03-18 03:45:11.604 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1142
17-03-18 03:45:11.604 -07 000000611 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:45:11.604 -07 000000608 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 03:45:11.604 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 115. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1671, R2=1741, Total=3412. Warn if over 250 bubbles per interval.
17-03-18 03:45:11.604 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:45:11.604 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-18 03:45:11.604 -07 000000611 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:45:11.604 -07 000000611 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 03:45:11.784 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP 1334
17-03-18 03:45:11.794 -07 000000606 INF: FPGA: Recv CAMDBLSNAP
17-03-18 03:45:11.794 -07 000000610 INF: FPGA: 'CAMDBLSNAP 410 410 197 197 28353 150' command took 2 ms to send, 1330 ms to get response, and 1343 ms overall
17-03-18 03:45:11.794 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 03:45:11.794 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 15 at Y-position 70.6884765625, Z-Position -0.128989614190371. ------
17-03-18 03:45:11.794 -07 000000625 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 03:45:11.794 -07 000000606 INF: Y Motor: MoveYZ optimized starting. Moving Y to 71.5326 mm, moving Z to -0.13564 mm
17-03-18 03:45:11.794 -07 000000606 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 03:45:11.794 -07 000000579 INF: FPGA: Recv FOCMRRCUR 
17-03-18 03:45:11.804 -07 000000625 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 03:45:11.804 -07 000000625 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 03:45:11.804 -07 000000462 INF: Z Motor: Entering MoveAbsStepped (DAC = 29631, sync = True, waitForSettling = False)
17-03-18 03:45:11.804 -07 000000462 INF: Z Motor: Moving to -0.135642 mm, started at -0.128990 mm, distance = -6.65 um
17-03-18 03:45:11.804 -07 000000608 INF: Y Motor: Entering MoveAbsStepped (target = 114452 steps, sync = True, waitForSettling = True)
17-03-18 03:45:11.804 -07 000000608 INF: Y Motor: Moving to 71.5326 mm, started at 70.6885 mm, delta = 0.8441 mm
17-03-18 03:45:11.814 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:45:11.814 -07 000000437 INF: FPGA: Recv YRDPOS 144771
17-03-18 03:45:11.824 -07 000000462 INF: FPGA: Xmit ZDACW 29631\n [Z Motor]
17-03-18 03:45:11.824 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-18 03:45:11.824 -07 000000608 INF: Y Motor: Encoder = 144771 = motor step 113102.3 = 70.6890 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:45:11.824 -07 000000479 INF: FPGA: Recv ZDACW
17-03-18 03:45:11.824 -07 000000608 INF: Y Motor: Last commanded position = 70.7026 mm (113124.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 03:45:11.824 -07 000000608 INF: Y Motor: Moving 1350 steps-29
17-03-18 03:45:11.834 -07 000000462 INF: FPGA: 'ZDACW 29631' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-18 03:45:11.834 -07 000000462 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:45:11.834 -07 000000467 INF: FPGA: Recv ZDACR 29631
17-03-18 03:45:11.844 -07 000000462 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:45:11.844 -07 000000462 INF: Z Motor: MoveAbsStepped took 38 ms (did NOT wait for settling yet))
17-03-18 03:45:11.844 -07 000000608 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 03:45:11.994 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 388 ms.
17-03-18 03:45:11.994 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-18 03:45:11.994 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:45:11.994 -07 000000611 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 387 ms.
17-03-18 03:45:11.994 -07 000000611 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-18 03:45:11.994 -07 000000611 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:45:12.004 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 03:45:12.004 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 03:45:12.004 -07 000000611 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 03:45:12.004 -07 000000561 INF: FPGA: Recv FOCMRRFOC
17-03-18 03:45:12.004 -07 000000625 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 03:45:12.014 -07 000000611 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 407 ms.
17-03-18 03:45:12.214 -07 000000437 INF: FPGA: Recv YMVTILE
17-03-18 03:45:12.214 -07 000000608 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 389 ms overall
17-03-18 03:45:12.264 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:45:12.264 -07 000000012 INF: FPGA: Recv YRDPOS 146471
17-03-18 03:45:12.274 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 03:45:12.274 -07 000000608 INF: Y Motor: Encoder = 146471 = motor step 114430.5 = 71.5190 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:45:12.274 -07 000000608 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-18 03:45:12.274 -07 000000608 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 389 ms, distance = 0.844 mm, average velocity = 2.170 mm/sec
17-03-18 03:45:13.224 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:45:13.224 -07 000000012 INF: FPGA: Recv YRDPOS 146471
17-03-18 03:45:13.234 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:45:13.234 -07 000000608 INF: Y Motor: Encoder = 146471 = motor step 114430.5 = 71.5190 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:45:13.254 -07 000000608 INF: Y Motor: After move to 71.532608, error = -0.013565, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 03:45:13.254 -07 000000608 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 03:45:13.254 -07 000000608 INF: Y Motor: Moved to 71.5190 after 1457 ms (table move)
17-03-18 03:45:13.264 -07 000000606 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135642 mm (DAC = 29631)
17-03-18 03:45:13.264 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:45:13.264 -07 000000467 INF: FPGA: Recv ZSGSRD 30413
17-03-18 03:45:13.274 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 03:45:13.274 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:45:13.274 -07 000000608 INF: FPGA: Recv ZSGSRD 30408
17-03-18 03:45:13.284 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:45:13.284 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:45:13.284 -07 000000625 INF: FPGA: Recv ZSGSRD 30407
17-03-18 03:45:13.294 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:45:13.294 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:45:13.294 -07 000000467 INF: FPGA: Recv ZSGSRD 30409
17-03-18 03:45:13.304 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:45:13.304 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:45:13.304 -07 000000479 INF: FPGA: Recv ZSGSRD 30412
17-03-18 03:45:13.314 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:45:13.314 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:45:13.314 -07 000000608 INF: FPGA: Recv ZSGSRD 30395
17-03-18 03:45:13.324 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:45:13.324 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:45:13.324 -07 000000437 INF: FPGA: Recv ZSGSRD 30406
17-03-18 03:45:13.334 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:45:13.334 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:45:13.334 -07 000000608 INF: FPGA: Recv ZSGSRD 30399
17-03-18 03:45:13.344 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:45:13.344 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:45:13.344 -07 000000012 INF: FPGA: Recv ZSGSRD 30401
17-03-18 03:45:13.354 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:45:13.354 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:45:13.354 -07 000000561 INF: FPGA: Recv ZSGSRD 30400
17-03-18 03:45:13.364 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:45:13.364 -07 000000606 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:45:13.364 -07 000000581 INF: FPGA: Recv ZPIEZORD 26229
17-03-18 03:45:13.374 -07 000000606 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:45:13.374 -07 000000606 INF: Z Motor: Piezo is near 36.0 V (nominally 0 to 100 V), expect near 45.2 V, since DAC is at 4.521 V. Piezo Error = -9.2 V.
17-03-18 03:45:13.374 -07 000000606 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.6 um, Read 10 ADC samples: Avg = 30405 (-134.9 uncal um), Error = 0.8 uncal um, Median = 30406 (-134.9 uncal um), StdDev = 6 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 30395 (-134.8 uncal um), Max = 30413 (-134.9 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-18 03:45:13.374 -07 000000606 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30405, posNoise = 8, negNoise = 10
17-03-18 03:45:13.374 -07 000000606 INF: Z Motor: After move to -0.135642, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:45:13.374 -07 000000606 INF: Z Motor: Settle wait time = 1462 ms, measure time = 107 ms (allowed 150 ms), total time = 1569 ms
17-03-18 03:45:13.374 -07 000000606 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-18 03:45:13.424 -07 000000606 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1624 ms
17-03-18 03:45:13.424 -07 000000606 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 03:45:13.424 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:45:13.424 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:45:13.424 -07 000000579 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:45:13.424 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:45:13.424 -07 000000512 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 03:45:13.424 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:45:13.424 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 03:45:13.424 -07 000000512 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 03:45:13.434 -07 000000512 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 03:45:13.434 -07 000000512 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 03:45:13.434 -07 000000512 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 03:45:13.434 -07 000000512 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 03:45:13.444 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 03:45:13.484 -07 000000625 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 03:45:13.784 -07 000000479 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 03:45:13.784 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 03:45:13.784 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 03:45:13.784 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2199785120, 0x0, 559484976) start.
17-03-18 03:45:13.824 -07 000000561 INF: FPGA: Recv @CAMSNAP 380
17-03-18 03:45:13.824 -07 000000581 INF: FPGA: Recv CAMSNAP
17-03-18 03:45:13.824 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 03:45:13.864 -07 000000579 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 116, FrontChillerTemperature: 3.997626,
17-03-18 03:45:13.904 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2199785120, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 03:45:13.904 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:45:13.904 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 03:45:13.904 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 03:45:13.924 -07 000000012 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 03:45:13.924 -07 000000512 INF: Autofocus start
17-03-18 03:45:13.924 -07 000000512 INF: MeasureProfile start
17-03-18 03:45:13.924 -07 000000625 INF: FPGA: Recv FOCMRRCUR 
17-03-18 03:45:13.934 -07 000000012 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 03:45:13.934 -07 000000012 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 03:45:13.934 -07 000000512 INF: MeasureProfile done
17-03-18 03:45:13.934 -07 000000512 INF: X=16  Z correction [um]=0.0530179
17-03-18 03:45:13.934 -07 000000512 INF: Autofocus finished
17-03-18 03:45:14.134 -07 000000467 INF: FPGA: Recv FOCMRRIMG
17-03-18 03:45:14.134 -07 000000012 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 03:45:14.134 -07 000000610 INF: ------------ Scan Snapping tile 15 at Y-position 71.51904296875, Z-position -0.135651522181377. ----------
17-03-18 03:45:14.144 -07 000000610 INF: Cycle	116	Tile	15	Exposure Settings		A	410	G	197	T	197	C	410
17-03-18 03:45:14.144 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28155, sync = True, waitForSettling = True)
17-03-18 03:45:14.144 -07 000000610 INF: Z Motor: Moving to -0.128885 mm, started at -0.135652 mm, distance = 6.77 um
17-03-18 03:45:14.144 -07 000000610 INF: FPGA: Xmit ZDACW 28155\n [Z Motor]
17-03-18 03:45:14.144 -07 000000467 INF: FPGA: Recv ZDACW
17-03-18 03:45:14.154 -07 000000610 INF: FPGA: 'ZDACW 28155' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 03:45:14.154 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:45:14.154 -07 000000437 INF: FPGA: Recv ZDACR 28155
17-03-18 03:45:14.164 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:45:14.164 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 03:45:14.314 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:45:14.314 -07 000000512 INF: FPGA: Recv ZSGSRD 29350
17-03-18 03:45:14.324 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:45:14.324 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:45:14.324 -07 000000569 INF: FPGA: Recv ZSGSRD 29356
17-03-18 03:45:14.334 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 03:45:14.334 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:45:14.334 -07 000000467 INF: FPGA: Recv ZSGSRD 29348
17-03-18 03:45:14.344 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 03:45:14.344 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:45:14.344 -07 000000581 INF: FPGA: Recv ZSGSRD 29349
17-03-18 03:45:14.354 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:45:14.354 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:45:14.354 -07 000000462 INF: FPGA: Recv ZSGSRD 29350
17-03-18 03:45:14.364 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:45:14.364 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:45:14.364 -07 000000606 INF: FPGA: Recv ZSGSRD 29356
17-03-18 03:45:14.374 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:45:14.374 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:45:14.374 -07 000000012 INF: FPGA: Recv ZSGSRD 29356
17-03-18 03:45:14.384 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:45:14.384 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:45:14.384 -07 000000579 INF: FPGA: Recv ZSGSRD 29354
17-03-18 03:45:14.394 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:45:14.394 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:45:14.394 -07 000000611 INF: FPGA: Recv ZSGSRD 29346
17-03-18 03:45:14.404 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:45:14.404 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:45:14.404 -07 000000467 INF: FPGA: Recv ZSGSRD 29355
17-03-18 03:45:14.414 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:45:14.414 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:45:14.414 -07 000000437 INF: FPGA: Recv ZPIEZORD 24834
17-03-18 03:45:14.424 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:45:14.424 -07 000000610 INF: Z Motor: Piezo is near 33.1 V (nominally 0 to 100 V), expect near 43.0 V, since DAC is at 4.296 V. Piezo Error = -9.9 V.
17-03-18 03:45:14.424 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.9 um, Read 10 ADC samples: Avg = 29352 (-128.1 uncal um), Error = 0.8 uncal um, Median = 29352 (-128.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29346 (-128.1 uncal um), Max = 29356 (-128.1 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 03:45:14.424 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29352, posNoise = 4, negNoise = 6
17-03-18 03:45:14.424 -07 000000610 INF: Z Motor: After move to -0.128885, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:45:14.424 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 03:45:14.424 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:45:14.424 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:45:14.424 -07 000000581 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 03:45:14.424 -07 000000437 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:45:14.424 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:45:14.424 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 03:45:14.424 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 03:45:14.424 -07 000000606 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:45:14.424 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 03:45:14.424 -07 000000581 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 03:45:14.424 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 03:45:14.424 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 03:45:14.434 -07 000000581 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 03:45:14.434 -07 000000581 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 03:45:14.434 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 03:45:14.434 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 03:45:14.444 -07 000000581 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-18 03:45:14.444 -07 000000581 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 03:45:14.444 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 12 ms.
17-03-18 03:45:14.444 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 17 ms.
17-03-18 03:45:14.444 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 410 410 197 197 28331 150\n [Camera]
17-03-18 03:45:14.654 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP turning red on 199
17-03-18 03:45:15.064 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 602
17-03-18 03:45:15.064 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 602
17-03-18 03:45:15.064 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:45:15.064 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:45:15.064 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) start.
17-03-18 03:45:15.064 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 602
17-03-18 03:45:15.064 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 602
17-03-18 03:45:15.064 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:45:15.064 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:45:15.064 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 03:45:15.254 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28331 800
17-03-18 03:45:15.404 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP turning grn on 945
17-03-18 03:45:15.454 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) end. Duration was 393 ms.
17-03-18 03:45:15.454 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-18 03:45:15.454 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:45:15.454 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 394 ms.
17-03-18 03:45:15.454 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-18 03:45:15.454 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:45:15.454 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:45:15.454 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 03:45:15.464 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:45:15.464 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 405 ms.
17-03-18 03:45:15.594 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1142
17-03-18 03:45:15.604 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1142
17-03-18 03:45:15.604 -07 000000437 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:45:15.604 -07 000000437 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:45:15.604 -07 000000437 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-18 03:45:15.604 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1142
17-03-18 03:45:15.604 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1142
17-03-18 03:45:15.604 -07 000000581 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:45:15.604 -07 000000581 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:45:15.604 -07 000000581 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-18 03:45:15.794 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP 1334
17-03-18 03:45:15.794 -07 000000561 INF: FPGA: Recv CAMDBLSNAP
17-03-18 03:45:15.794 -07 000000610 INF: FPGA: 'CAMDBLSNAP 410 410 197 197 28331 150' command took 2 ms to send, 1331 ms to get response, and 1343 ms overall
17-03-18 03:45:15.794 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 03:45:15.794 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 16 at Y-position 71.51904296875, Z-Position -0.128886826796103. ------
17-03-18 03:45:15.794 -07 000000561 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 03:45:15.794 -07 000000462 INF: Y Motor: MoveYZ optimized starting. Moving Y to 72.3626 mm, moving Z to -0.13523 mm
17-03-18 03:45:15.794 -07 000000462 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 03:45:16.004 -07 000000437 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 405 ms.
17-03-18 03:45:16.004 -07 000000437 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-18 03:45:16.004 -07 000000437 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:45:16.004 -07 000000581 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 404 ms.
17-03-18 03:45:16.004 -07 000000581 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 405 ms.
17-03-18 03:45:16.004 -07 000000581 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:45:16.014 -07 000000437 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 03:45:16.014 -07 000000437 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 412 ms.
17-03-18 03:45:16.014 -07 000000581 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 03:45:16.024 -07 000000581 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 416 ms.
17-03-18 03:45:16.024 -07 000000437 INF: Y Motor: Entering MoveAbsStepped (target = 115780 steps, sync = True, waitForSettling = True)
17-03-18 03:45:16.024 -07 000000437 INF: Y Motor: Moving to 72.3626 mm, started at 71.5190 mm, delta = 0.8436 mm
17-03-18 03:45:16.024 -07 000000437 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:45:16.024 -07 000000581 INF: FPGA: Recv FOCMRRCUR 
17-03-18 03:45:16.024 -07 000000581 INF: FPGA: Recv YRDPOS 146471
17-03-18 03:45:16.024 -07 000000561 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 229 ms to get response, and 231 ms overall
17-03-18 03:45:16.034 -07 000000437 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 03:45:16.034 -07 000000561 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 03:45:16.034 -07 000000437 INF: Y Motor: Encoder = 146471 = motor step 114430.5 = 71.5190 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:45:16.034 -07 000000437 INF: Y Motor: Last commanded position = 71.5326 mm (114452.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 03:45:16.034 -07 000000437 INF: Y Motor: Moving 1350 steps-28
17-03-18 03:45:16.034 -07 000000581 INF: Z Motor: Entering MoveAbsStepped (DAC = 29540, sync = True, waitForSettling = False)
17-03-18 03:45:16.034 -07 000000581 INF: Z Motor: Moving to -0.135225 mm, started at -0.128887 mm, distance = -6.34 um
17-03-18 03:45:16.044 -07 000000581 INF: FPGA: Xmit ZDACW 29540\n [Z Motor]
17-03-18 03:45:16.054 -07 000000437 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 03:45:16.824 -07 000000480 INF: FPGA: Recv ZDACW
17-03-18 03:45:16.824 -07 000000480 INF: FPGA: Recv FOCMRRFOC
17-03-18 03:45:16.824 -07 000000480 INF: FPGA: Recv YMVTILE
17-03-18 03:45:16.824 -07 000000480 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 03:45:16.824 -07 000000561 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 780 ms to get response, and 790 ms overall
17-03-18 03:45:16.824 -07 000000437 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 760 ms to get response, and 789 ms overall
17-03-18 03:45:16.824 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 115. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1671, R2=1741, Total=3412. Warn if over 250 bubbles per interval.
17-03-18 03:45:16.824 -07 000000581 INF: FPGA: 'ZDACW 29540' command took 0 ms to send, 770 ms to get response, and 789 ms overall
17-03-18 03:45:16.824 -07 000000581 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:45:16.824 -07 000000480 INF: FPGA: Recv ZDACR 29540
17-03-18 03:45:16.834 -07 000000581 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 03:45:16.834 -07 000000581 INF: Z Motor: MoveAbsStepped took 798 ms (did NOT wait for settling yet))
17-03-18 03:45:16.874 -07 000000437 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:45:16.874 -07 000000480 INF: FPGA: Recv YRDPOS 148172
17-03-18 03:45:16.884 -07 000000437 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 03:45:16.884 -07 000000437 INF: Y Motor: Encoder = 148172 = motor step 115759.4 = 72.3496 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:45:16.884 -07 000000437 INF: Y Motor: Position error before settling (table move) = -27 encoder counts (-0.013 mm)
17-03-18 03:45:16.884 -07 000000437 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 790 ms, distance = 0.844 mm, average velocity = 1.068 mm/sec
17-03-18 03:45:17.834 -07 000000437 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:45:17.834 -07 000000480 INF: FPGA: Recv YRDPOS 148172
17-03-18 03:45:17.844 -07 000000437 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:45:17.844 -07 000000437 INF: Y Motor: Encoder = 148172 = motor step 115759.4 = 72.3496 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:45:17.874 -07 000000437 INF: Y Motor: After move to 72.362610, error = -0.013000, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 03:45:17.874 -07 000000437 INF: Y Motor: Position error after settling (table move) = -27 encoder counts (-0.013 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 03:45:17.874 -07 000000437 INF: Y Motor: Moved to 72.3496 after 1848 ms (table move)
17-03-18 03:45:17.874 -07 000000462 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135225 mm (DAC = 29540)
17-03-18 03:45:17.874 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:45:17.874 -07 000000382 INF: FPGA: Recv ZSGSRD 30342
17-03-18 03:45:17.884 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 03:45:17.884 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:45:17.884 -07 000000382 INF: FPGA: Recv ZSGSRD 30347
17-03-18 03:45:17.894 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:45:17.894 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:45:17.894 -07 000000382 INF: FPGA: Recv ZSGSRD 30342
17-03-18 03:45:17.904 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:45:17.904 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:45:17.904 -07 000000561 INF: FPGA: Recv ZSGSRD 30340
17-03-18 03:45:17.914 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:45:17.914 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:45:17.914 -07 000000382 INF: FPGA: Recv ZSGSRD 30340
17-03-18 03:45:17.924 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:45:17.924 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:45:17.924 -07 000000487 INF: FPGA: Recv ZSGSRD 30343
17-03-18 03:45:17.934 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:45:17.934 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:45:17.934 -07 000000382 INF: FPGA: Recv ZSGSRD 30344
17-03-18 03:45:17.944 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:45:17.944 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:45:17.944 -07 000000561 INF: FPGA: Recv ZSGSRD 30341
17-03-18 03:45:17.954 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:45:17.954 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:45:17.954 -07 000000382 INF: FPGA: Recv ZSGSRD 30336
17-03-18 03:45:17.964 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:45:17.964 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:45:17.964 -07 000000437 INF: FPGA: Recv ZSGSRD 30343
17-03-18 03:45:17.974 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:45:17.974 -07 000000462 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:45:17.974 -07 000000487 INF: FPGA: Recv ZPIEZORD 26155
17-03-18 03:45:17.984 -07 000000462 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:45:17.984 -07 000000462 INF: Z Motor: Piezo is near 35.9 V (nominally 0 to 100 V), expect near 45.1 V, since DAC is at 4.508 V. Piezo Error = -9.2 V.
17-03-18 03:45:17.984 -07 000000462 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.2 um, Read 10 ADC samples: Avg = 30342 (-134.5 uncal um), Error = 0.8 uncal um, Median = 30342 (-134.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 30336 (-134.4 uncal um), Max = 30347 (-134.5 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 03:45:17.984 -07 000000462 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30342, posNoise = 5, negNoise = 6
17-03-18 03:45:17.984 -07 000000462 INF: Z Motor: After move to -0.135225, error = -0.000021, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:45:17.984 -07 000000462 INF: Z Motor: Settle wait time = 1844 ms, measure time = 105 ms (allowed 150 ms), total time = 1949 ms
17-03-18 03:45:17.984 -07 000000462 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 03:45:18.034 -07 000000462 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2231 ms
17-03-18 03:45:18.034 -07 000000462 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 03:45:18.034 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:45:18.034 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:45:18.034 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:45:18.034 -07 000000581 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:45:18.034 -07 000000487 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 03:45:18.034 -07 000000487 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:45:18.044 -07 000000487 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 03:45:18.044 -07 000000487 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 03:45:18.044 -07 000000487 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 03:45:18.044 -07 000000487 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 03:45:18.044 -07 000000487 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 03:45:18.054 -07 000000487 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 03:45:18.054 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 03:45:18.094 -07 000000437 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 03:45:18.394 -07 000000455 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 03:45:18.394 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 03:45:18.394 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 03:45:18.394 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 661079536, 0x0, 559484976) start.
17-03-18 03:45:18.434 -07 000000382 INF: FPGA: Recv @CAMSNAP 380
17-03-18 03:45:18.434 -07 000000437 INF: FPGA: Recv CAMSNAP
17-03-18 03:45:18.434 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 384 ms overall
17-03-18 03:45:18.514 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 661079536, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 03:45:18.514 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:45:18.514 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 03:45:18.514 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 03:45:18.534 -07 000000437 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 03:45:18.534 -07 000000561 INF: Autofocus start
17-03-18 03:45:18.534 -07 000000561 INF: MeasureProfile start
17-03-18 03:45:18.534 -07 000000455 INF: FPGA: Recv FOCMRRCUR 
17-03-18 03:45:18.544 -07 000000437 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 03:45:18.544 -07 000000437 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 03:45:18.544 -07 000000561 INF: MeasureProfile done
17-03-18 03:45:18.544 -07 000000561 INF: X=0  Z correction [um]=-0.02394831
17-03-18 03:45:18.544 -07 000000561 INF: Autofocus finished
17-03-18 03:45:18.744 -07 000000487 INF: FPGA: Recv FOCMRRIMG
17-03-18 03:45:18.744 -07 000000437 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 03:45:18.744 -07 000000610 INF: ------------ Scan Snapping tile 16 at Y-position 72.349609375, Z-position -0.135246796816446. ----------
17-03-18 03:45:18.744 -07 000000610 INF: Cycle	116	Tile	16	Exposure Settings		A	410	G	197	T	197	C	410
17-03-18 03:45:18.754 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28047, sync = True, waitForSettling = True)
17-03-18 03:45:18.754 -07 000000610 INF: Z Motor: Moving to -0.128391 mm, started at -0.135247 mm, distance = 6.86 um
17-03-18 03:45:18.754 -07 000000610 INF: FPGA: Xmit ZDACW 28047\n [Z Motor]
17-03-18 03:45:18.754 -07 000000455 INF: FPGA: Recv ZDACW
17-03-18 03:45:18.764 -07 000000610 INF: FPGA: 'ZDACW 28047' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 03:45:18.764 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:45:18.764 -07 000000437 INF: FPGA: Recv ZDACR 28047
17-03-18 03:45:18.774 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:45:18.774 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 03:45:18.924 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:45:18.924 -07 000000561 INF: FPGA: Recv ZSGSRD 29275
17-03-18 03:45:18.934 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:45:18.934 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:45:18.934 -07 000000437 INF: FPGA: Recv ZSGSRD 29281
17-03-18 03:45:18.944 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:45:18.944 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:45:18.944 -07 000000581 INF: FPGA: Recv ZSGSRD 29270
17-03-18 03:45:18.954 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:45:18.954 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:45:18.954 -07 000000462 INF: FPGA: Recv ZSGSRD 29275
17-03-18 03:45:18.964 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:45:18.964 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:45:18.964 -07 000000382 INF: FPGA: Recv ZSGSRD 29279
17-03-18 03:45:18.974 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:45:18.974 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:45:18.974 -07 000000462 INF: FPGA: Recv ZSGSRD 29276
17-03-18 03:45:18.984 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:45:18.984 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:45:18.984 -07 000000581 INF: FPGA: Recv ZSGSRD 29285
17-03-18 03:45:18.994 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:45:18.994 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:45:18.994 -07 000000437 INF: FPGA: Recv ZSGSRD 29277
17-03-18 03:45:19.004 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:45:19.004 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:45:19.004 -07 000000382 INF: FPGA: Recv ZSGSRD 29272
17-03-18 03:45:19.014 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:45:19.014 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:45:19.014 -07 000000480 INF: FPGA: Recv ZSGSRD 29279
17-03-18 03:45:19.024 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:45:19.024 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:45:19.024 -07 000000561 INF: FPGA: Recv ZPIEZORD 24695
17-03-18 03:45:19.034 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:45:19.034 -07 000000610 INF: Z Motor: Piezo is near 32.8 V (nominally 0 to 100 V), expect near 42.8 V, since DAC is at 4.280 V. Piezo Error = -10.0 V.
17-03-18 03:45:19.034 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.4 um, Read 10 ADC samples: Avg = 29277 (-127.6 uncal um), Error = 0.8 uncal um, Median = 29276 (-127.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 29270 (-127.6 uncal um), Max = 29285 (-127.7 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 03:45:19.034 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29277, posNoise = 8, negNoise = 7
17-03-18 03:45:19.034 -07 000000610 INF: Z Motor: After move to -0.128391, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:45:19.034 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 03:45:19.034 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:45:19.034 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:45:19.034 -07 000000487 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:45:19.034 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 03:45:19.034 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:45:19.034 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:45:19.034 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 03:45:19.034 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 03:45:19.034 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 03:45:19.034 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 03:45:19.034 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 03:45:19.034 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 03:45:19.044 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 03:45:19.044 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 03:45:19.044 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 03:45:19.044 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 03:45:19.054 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 14 ms.
17-03-18 03:45:19.054 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 19 ms.
17-03-18 03:45:19.054 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms.
17-03-18 03:45:19.054 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 03:45:19.054 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 410 410 197 197 28224 150\n [Camera]
17-03-18 03:45:19.224 -07 000000382 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 116, FrontChillerTemperature: 4.005817,
17-03-18 03:45:19.264 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 03:45:19.664 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 602
17-03-18 03:45:19.664 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 602
17-03-18 03:45:19.664 -07 000000437 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:45:19.664 -07 000000437 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:45:19.664 -07 000000437 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-18 03:45:19.674 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 602
17-03-18 03:45:19.674 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 602
17-03-18 03:45:19.674 -07 000000581 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:45:19.674 -07 000000581 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:45:19.674 -07 000000581 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) start.
17-03-18 03:45:19.864 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28224 795
17-03-18 03:45:20.014 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP turning grn on 945
17-03-18 03:45:20.064 -07 000000437 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 399 ms.
17-03-18 03:45:20.064 -07 000000437 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 03:45:20.064 -07 000000437 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:45:20.074 -07 000000581 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) end. Duration was 399 ms.
17-03-18 03:45:20.074 -07 000000581 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 03:45:20.074 -07 000000581 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:45:20.074 -07 000000437 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:45:20.074 -07 000000437 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 03:45:20.074 -07 000000581 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:45:20.084 -07 000000581 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-18 03:45:20.204 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1142
17-03-18 03:45:20.204 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1142
17-03-18 03:45:20.204 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:45:20.204 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:45:20.204 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) start.
17-03-18 03:45:20.214 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1142
17-03-18 03:45:20.214 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1142
17-03-18 03:45:20.214 -07 000000581 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:45:20.214 -07 000000581 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:45:20.214 -07 000000581 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-18 03:45:20.394 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP 1334
17-03-18 03:45:20.404 -07 000000437 INF: FPGA: Recv CAMDBLSNAP
17-03-18 03:45:20.404 -07 000000610 INF: FPGA: 'CAMDBLSNAP 410 410 197 197 28224 150' command took 2 ms to send, 1330 ms to get response, and 1341 ms overall
17-03-18 03:45:20.404 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 03:45:20.404 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 17 at Y-position 72.349609375, Z-Position -0.128405010885471. ------
17-03-18 03:45:20.404 -07 000000437 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 03:45:20.404 -07 000000455 INF: Y Motor: MoveYZ optimized starting. Moving Y to 73.1926 mm, moving Z to -0.13496 mm
17-03-18 03:45:20.404 -07 000000455 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 03:45:20.614 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) end. Duration was 403 ms.
17-03-18 03:45:20.614 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 03:45:20.614 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:45:20.614 -07 000000581 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 403 ms.
17-03-18 03:45:20.614 -07 000000581 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-18 03:45:20.614 -07 000000581 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:45:20.624 -07 000000581 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:45:20.624 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 03:45:20.624 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 412 ms.
17-03-18 03:45:20.624 -07 000000581 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-18 03:45:20.634 -07 000000462 INF: Y Motor: Entering MoveAbsStepped (target = 117108 steps, sync = True, waitForSettling = True)
17-03-18 03:45:20.634 -07 000000462 INF: Y Motor: Moving to 73.1926 mm, started at 72.3496 mm, delta = 0.8430 mm
17-03-18 03:45:20.634 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:45:20.634 -07 000000581 INF: FPGA: Recv FOCMRRCUR 
17-03-18 03:45:20.634 -07 000000581 INF: FPGA: Recv YRDPOS 148173
17-03-18 03:45:20.634 -07 000000437 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 226 ms to get response, and 229 ms overall
17-03-18 03:45:20.634 -07 000000581 INF: Z Motor: Entering MoveAbsStepped (DAC = 29481, sync = True, waitForSettling = False)
17-03-18 03:45:20.634 -07 000000581 INF: Z Motor: Moving to -0.134955 mm, started at -0.128405 mm, distance = -6.55 um
17-03-18 03:45:20.644 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 03:45:20.644 -07 000000462 INF: Y Motor: Encoder = 148173 = motor step 115760.2 = 72.3501 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:45:20.644 -07 000000581 INF: FPGA: Xmit ZDACW 29481\n [Z Motor]
17-03-18 03:45:20.644 -07 000000462 INF: Y Motor: Last commanded position = 72.3626 mm (115780.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 03:45:20.644 -07 000000462 INF: Y Motor: Moving 1348 steps-27
17-03-18 03:45:20.654 -07 000000437 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 03:45:20.664 -07 000000462 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 03:45:21.534 -07 000000474 INF: FPGA: Recv ZDACW
17-03-18 03:45:21.534 -07 000000474 INF: FPGA: Recv FOCMRRFOC
17-03-18 03:45:21.534 -07 000000474 INF: FPGA: Recv YMVTILE
17-03-18 03:45:21.534 -07 000000462 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 860 ms to get response, and 882 ms overall
17-03-18 03:45:21.534 -07 000000437 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 870 ms to get response, and 893 ms overall
17-03-18 03:45:21.534 -07 000000581 INF: FPGA: 'ZDACW 29481' command took 0 ms to send, 880 ms to get response, and 892 ms overall
17-03-18 03:45:21.534 -07 000000581 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:45:21.534 -07 000000437 INF: FPGA: Recv ZDACR 29481
17-03-18 03:45:21.544 -07 000000581 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 03:45:21.544 -07 000000581 INF: Z Motor: MoveAbsStepped took 902 ms (did NOT wait for settling yet))
17-03-18 03:45:21.594 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:45:21.594 -07 000000474 INF: FPGA: Recv YRDPOS 149865
17-03-18 03:45:21.604 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:45:21.604 -07 000000462 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:45:21.604 -07 000000462 INF: Y Motor: Position error before settling (table move) = -33 encoder counts (-0.016 mm)
17-03-18 03:45:21.604 -07 000000462 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 882 ms, distance = 0.843 mm, average velocity = 0.956 mm/sec
17-03-18 03:45:21.604 -07 000000474 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 03:45:21.604 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 115. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1671, R2=1741, Total=3412. Warn if over 250 bubbles per interval.
17-03-18 03:45:22.554 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:45:22.554 -07 000000437 INF: FPGA: Recv YRDPOS 149865
17-03-18 03:45:22.564 -07 000000462 INF: FPGA: 'YRDPOS' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:45:22.564 -07 000000462 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:45:22.604 -07 000000462 INF: Y Motor: After move to 73.192604, error = -0.016335, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 03:45:22.604 -07 000000462 INF: Y Motor: Position error after settling (table move) = -33 encoder counts (-0.016 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 03:45:22.604 -07 000000462 INF: Y Motor: Moved to 73.1763 after 1968 ms (table move)
17-03-18 03:45:22.604 -07 000000455 INF: Z Motor: EndOfMoveAbsStepped: target = -0.134955 mm (DAC = 29481)
17-03-18 03:45:22.604 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:45:22.604 -07 000000611 INF: FPGA: Recv ZSGSRD 30301
17-03-18 03:45:22.614 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 03:45:22.614 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:45:22.614 -07 000000479 INF: FPGA: Recv ZSGSRD 30298
17-03-18 03:45:22.624 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:45:22.624 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:45:22.624 -07 000000581 INF: FPGA: Recv ZSGSRD 30295
17-03-18 03:45:22.634 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:45:22.634 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:45:22.634 -07 000000474 INF: FPGA: Recv ZSGSRD 30292
17-03-18 03:45:22.644 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:45:22.644 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:45:22.644 -07 000000611 INF: FPGA: Recv ZSGSRD 30302
17-03-18 03:45:22.654 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:45:22.654 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:45:22.654 -07 000000437 INF: FPGA: Recv ZSGSRD 30299
17-03-18 03:45:22.664 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:45:22.664 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:45:22.664 -07 000000474 INF: FPGA: Recv ZSGSRD 30294
17-03-18 03:45:22.674 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:45:22.674 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:45:22.674 -07 000000479 INF: FPGA: Recv ZSGSRD 30302
17-03-18 03:45:22.684 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:45:22.684 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:45:22.684 -07 000000437 INF: FPGA: Recv ZSGSRD 30296
17-03-18 03:45:22.694 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:45:22.694 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:45:22.694 -07 000000474 INF: FPGA: Recv ZSGSRD 30305
17-03-18 03:45:22.704 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:45:22.704 -07 000000455 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:45:22.704 -07 000000437 INF: FPGA: Recv ZPIEZORD 26107
17-03-18 03:45:22.714 -07 000000455 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:45:22.714 -07 000000455 INF: Z Motor: Piezo is near 35.8 V (nominally 0 to 100 V), expect near 45.0 V, since DAC is at 4.499 V. Piezo Error = -9.2 V.
17-03-18 03:45:22.714 -07 000000455 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.0 um, Read 10 ADC samples: Avg = 30298 (-134.2 uncal um), Error = 0.8 uncal um, Median = 30298 (-134.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 30292 (-134.1 uncal um), Max = 30305 (-134.2 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 03:45:22.714 -07 000000455 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30298, posNoise = 7, negNoise = 6
17-03-18 03:45:22.714 -07 000000455 INF: Z Motor: After move to -0.134955, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:45:22.714 -07 000000455 INF: Z Motor: Settle wait time = 1967 ms, measure time = 105 ms (allowed 150 ms), total time = 2072 ms
17-03-18 03:45:22.714 -07 000000455 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 03:45:22.764 -07 000000455 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2353 ms
17-03-18 03:45:22.764 -07 000000455 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 03:45:22.764 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:45:22.764 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:45:22.764 -07 000000611 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:45:22.764 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:45:22.764 -07 000000474 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 03:45:22.764 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:45:22.764 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 03:45:22.764 -07 000000474 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 03:45:22.774 -07 000000474 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 03:45:22.774 -07 000000474 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 03:45:22.774 -07 000000474 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 03:45:22.774 -07 000000474 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 03:45:22.784 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 03:45:22.824 -07 000000455 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 03:45:23.124 -07 000000479 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 03:45:23.124 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 03:45:23.124 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 03:45:23.124 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 680160920, 0x0, 559484976) start.
17-03-18 03:45:23.164 -07 000000611 INF: FPGA: Recv @CAMSNAP 380
17-03-18 03:45:23.164 -07 000000625 INF: FPGA: Recv CAMSNAP
17-03-18 03:45:23.164 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 384 ms overall
17-03-18 03:45:23.254 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 680160920, 0x0, 559484976) end. Duration was 122 ms.
17-03-18 03:45:23.254 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:45:23.254 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 03:45:23.254 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 124 ms.
17-03-18 03:45:23.264 -07 000000474 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 03:45:23.264 -07 000000611 INF: Autofocus start
17-03-18 03:45:23.264 -07 000000611 INF: MeasureProfile start
17-03-18 03:45:23.264 -07 000000581 INF: FPGA: Recv FOCMRRCUR 
17-03-18 03:45:23.274 -07 000000474 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 03:45:23.274 -07 000000474 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 03:45:23.274 -07 000000611 INF: MeasureProfile done
17-03-18 03:45:23.274 -07 000000611 INF: X=0  Z correction [um]=-0.02394831
17-03-18 03:45:23.274 -07 000000611 INF: Autofocus finished
17-03-18 03:45:23.474 -07 000000462 INF: FPGA: Recv FOCMRRIMG
17-03-18 03:45:23.474 -07 000000474 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 03:45:23.474 -07 000000610 INF: ------------ Scan Snapping tile 17 at Y-position 73.17626953125, Z-position -0.134964131482208. ----------
17-03-18 03:45:23.474 -07 000000610 INF: Cycle	116	Tile	17	Exposure Settings		A	410	G	197	T	197	C	410
17-03-18 03:45:23.484 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27989, sync = True, waitForSettling = True)
17-03-18 03:45:23.484 -07 000000610 INF: Z Motor: Moving to -0.128125 mm, started at -0.134964 mm, distance = 6.84 um
17-03-18 03:45:23.484 -07 000000610 INF: FPGA: Xmit ZDACW 27989\n [Z Motor]
17-03-18 03:45:23.484 -07 000000455 INF: FPGA: Recv ZDACW
17-03-18 03:45:23.494 -07 000000610 INF: FPGA: 'ZDACW 27989' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:45:23.494 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:45:23.494 -07 000000625 INF: FPGA: Recv ZDACR 27989
17-03-18 03:45:23.504 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:45:23.504 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 03:45:23.654 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:45:23.654 -07 000000611 INF: FPGA: Recv ZSGSRD 29228
17-03-18 03:45:23.664 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:45:23.664 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:45:23.664 -07 000000581 INF: FPGA: Recv ZSGSRD 29231
17-03-18 03:45:23.674 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:45:23.674 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:45:23.674 -07 000000462 INF: FPGA: Recv ZSGSRD 29233
17-03-18 03:45:23.684 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:45:23.684 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:45:23.684 -07 000000625 INF: FPGA: Recv ZSGSRD 29237
17-03-18 03:45:23.694 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:45:23.694 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:45:23.694 -07 000000437 INF: FPGA: Recv ZSGSRD 29234
17-03-18 03:45:23.704 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:45:23.704 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:45:23.704 -07 000000581 INF: FPGA: Recv ZSGSRD 29238
17-03-18 03:45:23.714 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:45:23.714 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:45:23.714 -07 000000611 INF: FPGA: Recv ZSGSRD 29238
17-03-18 03:45:23.724 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 03:45:23.724 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:45:23.724 -07 000000462 INF: FPGA: Recv ZSGSRD 29234
17-03-18 03:45:23.734 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:45:23.734 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:45:23.734 -07 000000455 INF: FPGA: Recv ZSGSRD 29237
17-03-18 03:45:23.744 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:45:23.744 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:45:23.744 -07 000000437 INF: FPGA: Recv ZSGSRD 29235
17-03-18 03:45:23.754 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:45:23.754 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:45:23.754 -07 000000611 INF: FPGA: Recv ZPIEZORD 24685
17-03-18 03:45:23.764 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:45:23.764 -07 000000610 INF: Z Motor: Piezo is near 32.7 V (nominally 0 to 100 V), expect near 42.7 V, since DAC is at 4.271 V. Piezo Error = -10.0 V.
17-03-18 03:45:23.764 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.1 um, Read 10 ADC samples: Avg = 29234 (-127.4 uncal um), Error = 0.8 uncal um, Median = 29234 (-127.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29228 (-127.3 uncal um), Max = 29238 (-127.4 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 03:45:23.764 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29234, posNoise = 4, negNoise = 6
17-03-18 03:45:23.764 -07 000000610 INF: Z Motor: After move to -0.128125, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:45:23.764 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 03:45:23.764 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:45:23.764 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:45:23.764 -07 000000474 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:45:23.764 -07 000000437 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:45:23.764 -07 000000611 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 03:45:23.764 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 03:45:23.764 -07 000000455 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 03:45:23.764 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:45:23.764 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 03:45:23.764 -07 000000611 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 03:45:23.764 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 03:45:23.764 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 03:45:23.764 -07 000000611 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 03:45:23.764 -07 000000611 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 03:45:23.774 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 03:45:23.774 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 03:45:23.784 -07 000000611 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 03:45:23.784 -07 000000611 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 03:45:23.784 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 03:45:23.784 -07 000000455 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 03:45:23.784 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 410 410 197 197 28165 150\n [Camera]
17-03-18 03:45:23.984 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 03:45:24.394 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 602
17-03-18 03:45:24.394 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 602
17-03-18 03:45:24.404 -07 000000611 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:45:24.404 -07 000000611 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:45:24.404 -07 000000611 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) start.
17-03-18 03:45:24.404 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 602
17-03-18 03:45:24.404 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 602
17-03-18 03:45:24.404 -07 000000474 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:45:24.404 -07 000000474 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:45:24.404 -07 000000474 INF: Camera: sBCa_ReadImage(785074704, 2486767776, 0x0, 418435064) start.
17-03-18 03:45:24.584 -07 000000455 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 116, FrontChillerTemperature: 3.98264,
17-03-18 03:45:24.594 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28165 795
17-03-18 03:45:24.744 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning grn on 945
17-03-18 03:45:24.784 -07 000000474 INF: Camera: sBCa_ReadImage(785074704, 2486767776, 0x0, 418435064) end. Duration was 380 ms.
17-03-18 03:45:24.784 -07 000000474 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-18 03:45:24.784 -07 000000474 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:45:24.784 -07 000000611 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) end. Duration was 386 ms.
17-03-18 03:45:24.784 -07 000000611 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-18 03:45:24.784 -07 000000611 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:45:24.784 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:45:24.794 -07 000000611 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:45:24.794 -07 000000611 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-18 03:45:24.794 -07 000000474 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-18 03:45:24.934 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1142
17-03-18 03:45:24.944 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1142
17-03-18 03:45:24.944 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:45:24.944 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:45:24.944 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) start.
17-03-18 03:45:24.944 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1142
17-03-18 03:45:24.944 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1142
17-03-18 03:45:24.944 -07 000000611 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:45:24.944 -07 000000611 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:45:24.944 -07 000000611 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) start.
17-03-18 03:45:25.134 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP 1334
17-03-18 03:45:25.134 -07 000000625 INF: FPGA: Recv CAMDBLSNAP
17-03-18 03:45:25.134 -07 000000610 INF: FPGA: 'CAMDBLSNAP 410 410 197 197 28165 150' command took 2 ms to send, 1331 ms to get response, and 1342 ms overall
17-03-18 03:45:25.134 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 03:45:25.134 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 18 at Y-position 73.17626953125, Z-Position -0.128128769763375. ------
17-03-18 03:45:25.134 -07 000000455 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 03:45:25.134 -07 000000625 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.0226 mm, moving Z to -0.13448 mm
17-03-18 03:45:25.134 -07 000000625 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 03:45:25.144 -07 000000581 INF: Y Motor: Entering MoveAbsStepped (target = 118436 steps, sync = True, waitForSettling = True)
17-03-18 03:45:25.144 -07 000000581 INF: Y Motor: Moving to 74.0226 mm, started at 73.1763 mm, delta = 0.8463 mm
17-03-18 03:45:25.144 -07 000000581 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:45:25.344 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) end. Duration was 403 ms.
17-03-18 03:45:25.344 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 03:45:25.344 -07 000000474 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:45:25.344 -07 000000611 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) end. Duration was 402 ms.
17-03-18 03:45:25.344 -07 000000611 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-18 03:45:25.344 -07 000000611 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:45:25.354 -07 000000611 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:45:25.354 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 03:45:25.354 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-18 03:45:25.354 -07 000000611 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-18 03:45:25.364 -07 000000474 INF: Z Motor: Entering MoveAbsStepped (DAC = 29377, sync = True, waitForSettling = False)
17-03-18 03:45:25.364 -07 000000474 INF: Z Motor: Moving to -0.134479 mm, started at -0.128129 mm, distance = -6.35 um
17-03-18 03:45:25.364 -07 000000474 INF: FPGA: Xmit ZDACW 29377\n [Z Motor]
17-03-18 03:45:25.364 -07 000000611 INF: FPGA: Recv FOCMRRCUR 
17-03-18 03:45:25.364 -07 000000611 INF: FPGA: Recv YRDPOS 149865
17-03-18 03:45:25.364 -07 000000611 INF: FPGA: Recv ZDACW
17-03-18 03:45:25.364 -07 000000581 INF: FPGA: 'YRDPOS' command took 0 ms to send, 217 ms to get response, and 227 ms overall
17-03-18 03:45:25.374 -07 000000581 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:45:25.374 -07 000000455 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 227 ms to get response, and 230 ms overall
17-03-18 03:45:25.374 -07 000000474 INF: FPGA: 'ZDACW 29377' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 03:45:25.374 -07 000000455 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 03:45:25.374 -07 000000581 INF: Y Motor: Last commanded position = 73.1926 mm (117108.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 03:45:25.374 -07 000000581 INF: Y Motor: Moving 1354 steps-33
17-03-18 03:45:25.384 -07 000000474 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:45:25.384 -07 000000611 INF: FPGA: Recv ZDACR 29377
17-03-18 03:45:25.394 -07 000000581 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 03:45:25.394 -07 000000474 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-18 03:45:25.394 -07 000000474 INF: Z Motor: MoveAbsStepped took 26 ms (did NOT wait for settling yet))
17-03-18 03:45:25.574 -07 000000474 INF: FPGA: Recv FOCMRRFOC
17-03-18 03:45:25.574 -07 000000455 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 194 ms to get response, and 202 ms overall
17-03-18 03:45:25.764 -07 000000455 INF: FPGA: Recv YMVTILE
17-03-18 03:45:25.764 -07 000000581 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 396 ms overall
17-03-18 03:45:25.804 -07 000000581 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:45:25.814 -07 000000455 INF: FPGA: Recv YRDPOS 151569
17-03-18 03:45:25.814 -07 000000581 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 03:45:25.814 -07 000000581 INF: Y Motor: Encoder = 151569 = motor step 118413.3 = 74.0083 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:45:25.814 -07 000000581 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-18 03:45:25.814 -07 000000581 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 396 ms, distance = 0.846 mm, average velocity = 2.137 mm/sec
17-03-18 03:45:26.604 -07 000000611 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 03:45:26.604 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 115. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1671, R2=1741, Total=3412. Warn if over 250 bubbles per interval.
17-03-18 03:45:26.764 -07 000000581 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:45:26.764 -07 000000611 INF: FPGA: Recv YRDPOS 151569
17-03-18 03:45:26.774 -07 000000581 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:45:26.774 -07 000000581 INF: Y Motor: Encoder = 151569 = motor step 118413.3 = 74.0083 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:45:26.794 -07 000000581 INF: Y Motor: After move to 74.022606, error = -0.014305, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 03:45:26.794 -07 000000581 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 03:45:26.794 -07 000000581 INF: Y Motor: Moved to 74.0083 after 1653 ms (table move)
17-03-18 03:45:26.794 -07 000000625 INF: Z Motor: EndOfMoveAbsStepped: target = -0.134479 mm (DAC = 29377)
17-03-18 03:45:26.794 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:45:26.804 -07 000000474 INF: FPGA: Recv ZSGSRD 30228
17-03-18 03:45:26.804 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-18 03:45:26.804 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:45:26.804 -07 000000474 INF: FPGA: Recv ZSGSRD 30227
17-03-18 03:45:26.814 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 03:45:26.814 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:45:26.814 -07 000000611 INF: FPGA: Recv ZSGSRD 30221
17-03-18 03:45:26.824 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:45:26.824 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:45:26.824 -07 000000474 INF: FPGA: Recv ZSGSRD 30225
17-03-18 03:45:26.834 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:45:26.834 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:45:26.834 -07 000000474 INF: FPGA: Recv ZSGSRD 30223
17-03-18 03:45:26.844 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:45:26.844 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:45:26.844 -07 000000581 INF: FPGA: Recv ZSGSRD 30229
17-03-18 03:45:26.854 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:45:26.854 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:45:26.854 -07 000000611 INF: FPGA: Recv ZSGSRD 30218
17-03-18 03:45:26.864 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:45:26.864 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:45:26.864 -07 000000581 INF: FPGA: Recv ZSGSRD 30219
17-03-18 03:45:26.874 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:45:26.874 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:45:26.874 -07 000000455 INF: FPGA: Recv ZSGSRD 30220
17-03-18 03:45:26.884 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:45:26.884 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:45:26.884 -07 000000611 INF: FPGA: Recv ZSGSRD 30219
17-03-18 03:45:26.894 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:45:26.894 -07 000000625 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:45:26.894 -07 000000474 INF: FPGA: Recv ZPIEZORD 26017
17-03-18 03:45:26.904 -07 000000625 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:45:26.904 -07 000000625 INF: Z Motor: Piezo is near 35.6 V (nominally 0 to 100 V), expect near 44.8 V, since DAC is at 4.483 V. Piezo Error = -9.2 V.
17-03-18 03:45:26.904 -07 000000625 INF: Z Motor: ReadAdcAverage: Commanded Z = -134.5 um, Read 10 ADC samples: Avg = 30223 (-133.7 uncal um), Error = 0.8 uncal um, Median = 30222 (-133.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 30218 (-133.7 uncal um), Max = 30229 (-133.7 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 03:45:26.904 -07 000000625 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30223, posNoise = 6, negNoise = 5
17-03-18 03:45:26.904 -07 000000625 INF: Z Motor: After move to -0.134479, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:45:26.904 -07 000000625 INF: Z Motor: Settle wait time = 1434 ms, measure time = 102 ms (allowed 150 ms), total time = 1536 ms
17-03-18 03:45:26.904 -07 000000625 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-18 03:45:26.954 -07 000000625 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1812 ms
17-03-18 03:45:26.954 -07 000000625 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 03:45:26.954 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:45:26.954 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:45:26.954 -07 000000581 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 03:45:26.954 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:45:26.954 -07 000000611 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:45:26.954 -07 000000455 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:45:26.954 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 03:45:26.954 -07 000000581 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 03:45:26.964 -07 000000581 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 03:45:26.964 -07 000000581 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 03:45:26.964 -07 000000581 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 03:45:26.964 -07 000000581 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 03:45:26.974 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 03:45:27.014 -07 000000455 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 03:45:27.314 -07 000000625 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 03:45:27.314 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 03:45:27.314 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 03:45:27.314 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1495437528, 0x0, 559484976) start.
17-03-18 03:45:27.354 -07 000000611 INF: FPGA: Recv @CAMSNAP 383
17-03-18 03:45:27.354 -07 000000625 INF: FPGA: Recv CAMSNAP
17-03-18 03:45:27.354 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 379 ms to get response, and 387 ms overall
17-03-18 03:45:27.444 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1495437528, 0x0, 559484976) end. Duration was 123 ms.
17-03-18 03:45:27.444 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:45:27.444 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-18 03:45:27.444 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 126 ms.
17-03-18 03:45:27.454 -07 000000625 INF: Autofocus start
17-03-18 03:45:27.454 -07 000000625 INF: MeasureProfile start
17-03-18 03:45:27.454 -07 000000611 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 03:45:27.454 -07 000000608 INF: FPGA: Recv FOCMRRCUR 
17-03-18 03:45:27.464 -07 000000611 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 03:45:27.464 -07 000000611 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 03:45:27.464 -07 000000625 INF: MeasureProfile done
17-03-18 03:45:27.464 -07 000000625 INF: X=-64  Z correction [um]=-0.3149434
17-03-18 03:45:27.464 -07 000000625 INF: Autofocus finished
17-03-18 03:45:27.664 -07 000000625 INF: FPGA: Recv FOCMRRIMG
17-03-18 03:45:27.664 -07 000000611 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 03:45:27.674 -07 000000610 INF: ------------ Scan Snapping tile 18 at Y-position 74.00830078125, Z-position -0.134482315571576. ----------
17-03-18 03:45:27.674 -07 000000610 INF: Cycle	116	Tile	18	Exposure Settings		A	410	G	197	T	197	C	410
17-03-18 03:45:27.674 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27821, sync = True, waitForSettling = True)
17-03-18 03:45:27.674 -07 000000610 INF: Z Motor: Moving to -0.127356 mm, started at -0.134482 mm, distance = 7.13 um
17-03-18 03:45:27.674 -07 000000610 INF: FPGA: Xmit ZDACW 27821\n [Z Motor]
17-03-18 03:45:27.674 -07 000000474 INF: FPGA: Recv ZDACW
17-03-18 03:45:27.684 -07 000000610 INF: FPGA: 'ZDACW 27821' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 03:45:27.684 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:45:27.684 -07 000000625 INF: FPGA: Recv ZDACR 27821
17-03-18 03:45:27.694 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:45:27.694 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 03:45:27.854 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:45:27.854 -07 000000474 INF: FPGA: Recv ZSGSRD 29109
17-03-18 03:45:27.864 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 03:45:27.874 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:45:27.874 -07 000000581 INF: FPGA: Recv ZSGSRD 29113
17-03-18 03:45:27.884 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 03:45:27.904 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:45:27.904 -07 000000581 INF: FPGA: Recv ZSGSRD 29117
17-03-18 03:45:27.914 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 03:45:27.924 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:45:27.924 -07 000000625 INF: FPGA: Recv ZSGSRD 29112
17-03-18 03:45:27.934 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 03:45:27.934 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:45:27.934 -07 000000581 INF: FPGA: Recv ZSGSRD 29111
17-03-18 03:45:27.944 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:45:27.944 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:45:27.944 -07 000000455 INF: FPGA: Recv ZSGSRD 29111
17-03-18 03:45:27.954 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:45:27.954 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:45:27.954 -07 000000581 INF: FPGA: Recv ZSGSRD 29115
17-03-18 03:45:27.964 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:45:27.964 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:45:27.964 -07 000000455 INF: FPGA: Recv ZSGSRD 29115
17-03-18 03:45:27.974 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:45:27.974 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:45:27.974 -07 000000608 INF: FPGA: Recv ZSGSRD 29111
17-03-18 03:45:27.984 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:45:27.984 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:45:27.984 -07 000000581 INF: FPGA: Recv ZSGSRD 29119
17-03-18 03:45:27.994 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:45:27.994 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:45:27.994 -07 000000625 INF: FPGA: Recv ZPIEZORD 24564
17-03-18 03:45:28.004 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:45:28.004 -07 000000610 INF: Z Motor: Piezo is near 32.5 V (nominally 0 to 100 V), expect near 42.5 V, since DAC is at 4.245 V. Piezo Error = -10.0 V.
17-03-18 03:45:28.004 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -127.4 um, Read 10 ADC samples: Avg = 29113 (-126.6 uncal um), Error = 0.8 uncal um, Median = 29112 (-126.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29109 (-126.6 uncal um), Max = 29119 (-126.6 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 03:45:28.004 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29113, posNoise = 6, negNoise = 4
17-03-18 03:45:28.004 -07 000000610 INF: Z Motor: After move to -0.127356, error = 0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:45:28.004 -07 000000610 INF: Z Motor: MoveAbsStepped took 328 ms)
17-03-18 03:45:28.004 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:45:28.004 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:45:28.004 -07 000000474 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:45:28.004 -07 000000625 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:45:28.004 -07 000000608 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 03:45:28.004 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:45:28.004 -07 000000581 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 03:45:28.004 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 03:45:28.004 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 03:45:28.004 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 03:45:28.004 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 03:45:28.004 -07 000000581 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 03:45:28.014 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 03:45:28.014 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 03:45:28.014 -07 000000581 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 03:45:28.014 -07 000000581 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 03:45:28.014 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 03:45:28.014 -07 000000608 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 12 ms.
17-03-18 03:45:28.024 -07 000000581 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 03:45:28.024 -07 000000581 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 03:45:28.024 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 410 410 197 197 27997 150\n [Camera]
17-03-18 03:45:28.224 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 03:45:28.634 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 602
17-03-18 03:45:28.634 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 602
17-03-18 03:45:28.634 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 602
17-03-18 03:45:28.634 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 602
17-03-18 03:45:28.634 -07 000000611 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:45:28.634 -07 000000611 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:45:28.634 -07 000000611 INF: Camera: sBCa_ReadImage(785074704, 2620985504, 0x0, 418435064) start.
17-03-18 03:45:28.634 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:45:28.634 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:45:28.634 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 2684358704, 0x0, 391868352) start.
17-03-18 03:45:28.824 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 27997 795
17-03-18 03:45:28.974 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP turning grn on 945
17-03-18 03:45:29.024 -07 000000611 INF: Camera: sBCa_ReadImage(785074704, 2620985504, 0x0, 418435064) end. Duration was 390 ms.
17-03-18 03:45:29.024 -07 000000611 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-18 03:45:29.024 -07 000000611 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:45:29.034 -07 000000611 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:45:29.034 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 2684358704, 0x0, 391868352) end. Duration was 396 ms.
17-03-18 03:45:29.034 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 03:45:29.034 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:45:29.034 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:45:29.034 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 03:45:29.034 -07 000000611 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 03:45:29.174 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1142
17-03-18 03:45:29.174 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1142
17-03-18 03:45:29.174 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:45:29.174 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:45:29.174 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 2719780968, 0x0, 391868352) start.
17-03-18 03:45:29.174 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1142
17-03-18 03:45:29.174 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1142
17-03-18 03:45:29.174 -07 000000625 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:45:29.314 -07 000000625 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:45:29.314 -07 000000625 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) start.
17-03-18 03:45:29.364 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP 1335
17-03-18 03:45:29.364 -07 000000579 INF: FPGA: Recv CAMDBLSNAP
17-03-18 03:45:29.364 -07 000000610 INF: FPGA: 'CAMDBLSNAP 410 410 197 197 27997 150' command took 2 ms to send, 1334 ms to get response, and 1342 ms overall
17-03-18 03:45:29.364 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 03:45:29.364 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 19 at Y-position 74.00830078125, Z-Position -0.127351440094222. ------
17-03-18 03:45:29.374 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 03:45:29.374 -07 000000474 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.8526 mm, moving Z to -0.13336 mm
17-03-18 03:45:29.374 -07 000000474 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 03:45:29.374 -07 000000467 INF: FPGA: Recv FOCMRRCUR 
17-03-18 03:45:29.374 -07 000000611 INF: Z Motor: Entering MoveAbsStepped (DAC = 29133, sync = True, waitForSettling = False)
17-03-18 03:45:29.374 -07 000000611 INF: Z Motor: Moving to -0.133362 mm, started at -0.127351 mm, distance = -6.01 um
17-03-18 03:45:29.374 -07 000000581 INF: Y Motor: Entering MoveAbsStepped (target = 119764 steps, sync = True, waitForSettling = True)
17-03-18 03:45:29.374 -07 000000581 INF: Y Motor: Moving to 74.8526 mm, started at 74.0083 mm, delta = 0.8443 mm
17-03-18 03:45:29.384 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:45:29.384 -07 000000581 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:45:29.384 -07 000000608 INF: FPGA: Recv YRDPOS 151569
17-03-18 03:45:29.394 -07 000000611 INF: FPGA: Xmit ZDACW 29133\n [Z Motor]
17-03-18 03:45:29.394 -07 000000581 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-18 03:45:29.394 -07 000000581 INF: Y Motor: Encoder = 151569 = motor step 118413.3 = 74.0083 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:45:29.394 -07 000000581 INF: Y Motor: Last commanded position = 74.0226 mm (118436.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 03:45:29.394 -07 000000581 INF: Y Motor: Moving 1351 steps-29
17-03-18 03:45:29.394 -07 000000512 INF: FPGA: Recv ZDACW
17-03-18 03:45:29.404 -07 000000569 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 03:45:29.404 -07 000000611 INF: FPGA: 'ZDACW 29133' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-18 03:45:29.414 -07 000000581 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 03:45:29.424 -07 000000611 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:45:29.424 -07 000000608 INF: FPGA: Recv ZDACR 29133
17-03-18 03:45:29.434 -07 000000611 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 03:45:29.434 -07 000000611 INF: Z Motor: MoveAbsStepped took 56 ms (did NOT wait for settling yet))
17-03-18 03:45:29.574 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 2719780968, 0x0, 391868352) end. Duration was 404 ms.
17-03-18 03:45:29.574 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-18 03:45:29.574 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:45:29.584 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 03:45:29.584 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-18 03:45:29.604 -07 000000012 INF: FPGA: Recv FOCMRRFOC
17-03-18 03:45:29.604 -07 000000569 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 03:45:29.704 -07 000000625 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) end. Duration was 388 ms.
17-03-18 03:45:29.704 -07 000000625 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-18 03:45:29.704 -07 000000625 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:45:29.704 -07 000000625 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:45:29.714 -07 000000625 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 536 ms.
17-03-18 03:45:29.784 -07 000000455 INF: FPGA: Recv YMVTILE
17-03-18 03:45:29.784 -07 000000581 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 03:45:29.814 -07 000000581 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:45:29.824 -07 000000579 INF: FPGA: Recv YRDPOS 153256
17-03-18 03:45:29.824 -07 000000581 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 03:45:29.824 -07 000000581 INF: Y Motor: Encoder = 153256 = motor step 119731.3 = 74.8320 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:45:29.824 -07 000000581 INF: Y Motor: Position error before settling (table move) = -42 encoder counts (-0.021 mm)
17-03-18 03:45:29.824 -07 000000581 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.844 mm, average velocity = 2.127 mm/sec
17-03-18 03:45:29.944 -07 000000012 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 116, FrontChillerTemperature: 4.011254,
17-03-18 03:45:30.774 -07 000000581 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:45:30.774 -07 000000455 INF: FPGA: Recv YRDPOS 153256
17-03-18 03:45:30.784 -07 000000581 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:45:30.784 -07 000000581 INF: Y Motor: Encoder = 153256 = motor step 119731.3 = 74.8320 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:45:30.804 -07 000000581 INF: Y Motor: After move to 74.852608, error = -0.020576, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 03:45:30.804 -07 000000581 INF: Y Motor: Position error after settling (table move) = -42 encoder counts (-0.021 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 03:45:30.804 -07 000000581 INF: Y Motor: Moved to 74.8320 after 1426 ms (table move)
17-03-18 03:45:30.804 -07 000000474 INF: Z Motor: EndOfMoveAbsStepped: target = -0.133362 mm (DAC = 29133)
17-03-18 03:45:30.804 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:45:30.804 -07 000000579 INF: FPGA: Recv ZSGSRD 30048
17-03-18 03:45:30.814 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 03:45:30.814 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:45:30.814 -07 000000579 INF: FPGA: Recv ZSGSRD 30046
17-03-18 03:45:30.824 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:45:30.824 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:45:30.824 -07 000000581 INF: FPGA: Recv ZSGSRD 30045
17-03-18 03:45:30.834 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:45:30.834 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:45:30.834 -07 000000581 INF: FPGA: Recv ZSGSRD 30042
17-03-18 03:45:30.844 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:45:30.844 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:45:30.844 -07 000000581 INF: FPGA: Recv ZSGSRD 30044
17-03-18 03:45:30.854 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:45:30.854 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:45:30.854 -07 000000579 INF: FPGA: Recv ZSGSRD 30047
17-03-18 03:45:30.864 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:45:30.864 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:45:30.864 -07 000000579 INF: FPGA: Recv ZSGSRD 30054
17-03-18 03:45:30.874 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:45:30.874 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:45:30.874 -07 000000455 INF: FPGA: Recv ZSGSRD 30052
17-03-18 03:45:30.884 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:45:30.884 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:45:30.884 -07 000000455 INF: FPGA: Recv ZSGSRD 30051
17-03-18 03:45:30.894 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:45:30.894 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:45:30.894 -07 000000581 INF: FPGA: Recv ZSGSRD 30049
17-03-18 03:45:30.904 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:45:30.904 -07 000000474 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:45:30.904 -07 000000581 INF: FPGA: Recv ZPIEZORD 25814
17-03-18 03:45:30.914 -07 000000474 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:45:30.914 -07 000000474 INF: Z Motor: Piezo is near 35.1 V (nominally 0 to 100 V), expect near 44.5 V, since DAC is at 4.445 V. Piezo Error = -9.3 V.
17-03-18 03:45:30.914 -07 000000474 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.4 um, Read 10 ADC samples: Avg = 30048 (-132.6 uncal um), Error = 0.8 uncal um, Median = 30048 (-132.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 30042 (-132.5 uncal um), Max = 30054 (-132.6 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 03:45:30.914 -07 000000474 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30048, posNoise = 6, negNoise = 6
17-03-18 03:45:30.914 -07 000000474 INF: Z Motor: After move to -0.133362, error = 0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:45:30.914 -07 000000474 INF: Z Motor: Settle wait time = 1430 ms, measure time = 107 ms (allowed 150 ms), total time = 1537 ms
17-03-18 03:45:30.914 -07 000000474 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-18 03:45:30.964 -07 000000474 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1589 ms
17-03-18 03:45:30.964 -07 000000474 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 03:45:30.964 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:45:30.964 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:45:30.964 -07 000000581 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:45:30.974 -07 000000474 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:45:30.974 -07 000000455 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 03:45:30.974 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:45:30.974 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 03:45:30.974 -07 000000455 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 03:45:30.974 -07 000000455 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 03:45:30.974 -07 000000455 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 03:45:30.984 -07 000000455 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 03:45:30.984 -07 000000455 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 03:45:30.984 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 03:45:31.034 -07 000000474 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 03:45:31.334 -07 000000581 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 03:45:31.334 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 03:45:31.334 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 03:45:31.334 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 610341080, 0x0, 559484976) start.
17-03-18 03:45:31.364 -07 000000581 INF: FPGA: Recv @CAMSNAP 380
17-03-18 03:45:31.374 -07 000000455 INF: FPGA: Recv CAMSNAP
17-03-18 03:45:31.374 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 380 ms to get response, and 384 ms overall
17-03-18 03:45:31.454 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 610341080, 0x0, 559484976) end. Duration was 118 ms.
17-03-18 03:45:31.454 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:45:31.454 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 03:45:31.454 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 121 ms.
17-03-18 03:45:31.474 -07 000000455 INF: Autofocus start
17-03-18 03:45:31.474 -07 000000455 INF: MeasureProfile start
17-03-18 03:45:31.474 -07 000000474 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 03:45:31.474 -07 000000579 INF: FPGA: Recv FOCMRRCUR 
17-03-18 03:45:31.484 -07 000000474 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 03:45:31.484 -07 000000474 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 03:45:31.484 -07 000000455 INF: MeasureProfile done
17-03-18 03:45:31.484 -07 000000455 INF: X=48  Z correction [um]=0.2069503
17-03-18 03:45:31.484 -07 000000455 INF: Autofocus finished
17-03-18 03:45:31.604 -07 000000581 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 03:45:31.604 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 115. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1671, R2=1741, Total=3412. Warn if over 250 bubbles per interval.
17-03-18 03:45:31.684 -07 000000487 INF: FPGA: Recv FOCMRRIMG
17-03-18 03:45:31.684 -07 000000474 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 03:45:31.684 -07 000000610 INF: ------------ Scan Snapping tile 19 at Y-position 74.83203125, Z-position -0.133358078446768. ----------
17-03-18 03:45:31.684 -07 000000610 INF: Cycle	116	Tile	19	Exposure Settings		A	410	G	197	T	197	C	410
17-03-18 03:45:31.694 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27691, sync = True, waitForSettling = True)
17-03-18 03:45:31.694 -07 000000610 INF: Z Motor: Moving to -0.126761 mm, started at -0.133358 mm, distance = 6.60 um
17-03-18 03:45:31.694 -07 000000610 INF: FPGA: Xmit ZDACW 27691\n [Z Motor]
17-03-18 03:45:31.694 -07 000000581 INF: FPGA: Recv ZDACW
17-03-18 03:45:31.704 -07 000000610 INF: FPGA: 'ZDACW 27691' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:45:31.704 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:45:31.704 -07 000000474 INF: FPGA: Recv ZDACR 27691
17-03-18 03:45:31.714 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:45:31.714 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 03:45:31.864 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:45:31.864 -07 000000579 INF: FPGA: Recv ZSGSRD 29017
17-03-18 03:45:31.874 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:45:31.874 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:45:31.874 -07 000000581 INF: FPGA: Recv ZSGSRD 29023
17-03-18 03:45:31.884 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:45:31.884 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:45:31.884 -07 000000455 INF: FPGA: Recv ZSGSRD 29019
17-03-18 03:45:31.894 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:45:31.894 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:45:31.894 -07 000000474 INF: FPGA: Recv ZSGSRD 29022
17-03-18 03:45:31.904 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:45:31.904 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:45:31.904 -07 000000487 INF: FPGA: Recv ZSGSRD 29024
17-03-18 03:45:31.914 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:45:31.914 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:45:31.914 -07 000000561 INF: FPGA: Recv ZSGSRD 29023
17-03-18 03:45:31.924 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:45:31.924 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:45:31.924 -07 000000455 INF: FPGA: Recv ZSGSRD 29022
17-03-18 03:45:31.934 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:45:31.934 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:45:31.934 -07 000000487 INF: FPGA: Recv ZSGSRD 29018
17-03-18 03:45:31.944 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:45:31.944 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:45:31.944 -07 000000382 INF: FPGA: Recv ZSGSRD 29018
17-03-18 03:45:31.954 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:45:31.954 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:45:31.954 -07 000000579 INF: FPGA: Recv ZSGSRD 29019
17-03-18 03:45:31.964 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:45:31.964 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:45:31.964 -07 000000455 INF: FPGA: Recv ZPIEZORD 24480
17-03-18 03:45:31.974 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:45:31.974 -07 000000610 INF: Z Motor: Piezo is near 32.3 V (nominally 0 to 100 V), expect near 42.3 V, since DAC is at 4.225 V. Piezo Error = -10.0 V.
17-03-18 03:45:31.974 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -126.8 um, Read 10 ADC samples: Avg = 29020 (-126.0 uncal um), Error = 0.8 uncal um, Median = 29020 (-126.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 29017 (-126.0 uncal um), Max = 29024 (-126.0 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 03:45:31.974 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29020, posNoise = 4, negNoise = 3
17-03-18 03:45:31.974 -07 000000610 INF: Z Motor: After move to -0.126761, error = 0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:45:31.974 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 03:45:31.974 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:45:31.974 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:45:31.974 -07 000000579 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:45:31.974 -07 000000581 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 03:45:31.974 -07 000000487 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:45:31.974 -07 000000455 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 03:45:31.974 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 03:45:31.974 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:45:31.974 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 03:45:31.974 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 03:45:31.974 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 03:45:31.974 -07 000000581 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 03:45:31.984 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 03:45:31.984 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 03:45:31.984 -07 000000581 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 03:45:31.984 -07 000000581 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 03:45:31.994 -07 000000581 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 03:45:31.994 -07 000000581 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 03:45:31.994 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-18 03:45:31.994 -07 000000455 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 03:45:31.994 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 410 410 197 197 27867 150\n [Camera]
17-03-18 03:45:32.194 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 03:45:32.604 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 602
17-03-18 03:45:32.604 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 602
17-03-18 03:45:32.604 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:45:32.604 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 602
17-03-18 03:45:32.604 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 602
17-03-18 03:45:32.604 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:45:32.614 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:45:32.614 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-18 03:45:32.614 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:45:32.614 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2199785120, 0x0, 418435064) start.
17-03-18 03:45:32.794 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 27867 795
17-03-18 03:45:32.944 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP turning grn on 945
17-03-18 03:45:33.004 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 397 ms.
17-03-18 03:45:33.004 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 03:45:33.004 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:45:33.014 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2199785120, 0x0, 418435064) end. Duration was 395 ms.
17-03-18 03:45:33.014 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 03:45:33.014 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:45:33.014 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 03:45:33.014 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-18 03:45:33.014 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:45:33.024 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-18 03:45:33.144 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1142
17-03-18 03:45:33.144 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1142
17-03-18 03:45:33.144 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:45:33.144 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1142
17-03-18 03:45:33.144 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1142
17-03-18 03:45:33.144 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:45:33.274 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:45:33.274 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-18 03:45:33.274 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:45:33.274 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) start.
17-03-18 03:45:33.334 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP 1335
17-03-18 03:45:33.334 -07 000000382 INF: FPGA: Recv CAMDBLSNAP
17-03-18 03:45:33.334 -07 000000610 INF: FPGA: 'CAMDBLSNAP 410 410 197 197 27867 150' command took 2 ms to send, 1337 ms to get response, and 1342 ms overall
17-03-18 03:45:33.664 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) end. Duration was 391 ms.
17-03-18 03:45:33.664 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-18 03:45:33.664 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:45:33.664 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 396 ms.
17-03-18 03:45:33.664 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 03:45:33.664 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:45:33.674 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:45:33.674 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:45:33.674 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 527 ms.
17-03-18 03:45:33.674 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) start.
17-03-18 03:45:33.674 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 529 ms.
17-03-18 03:45:33.714 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) end. Duration was 42 ms.
17-03-18 03:45:33.714 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) start.
17-03-18 03:45:33.754 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) end. Duration was 43 ms.
17-03-18 03:45:33.774 -07 000000610 INF: Enabling Skipping AutoFocus in the next 5 cycles.
17-03-18 03:45:33.774 -07 000000610 INF: Imaging Cycle 116: ScanTilesCommand Cycle 116 time end. Duration was 162013 ms.
17-03-18 03:45:33.774 -07 000000610 INF: =================== Cycle #116 ===================
17-03-18 03:45:33.774 -07 000000610 INF: ===================  ===================
17-03-18 03:45:33.774 -07 000000480 INF: FPGA: Xmit EXLED1ADCR\n [GreenLED]
17-03-18 03:45:33.784 -07 000000382 INF: FPGA: Recv EXLED1ADCR 26
17-03-18 03:45:33.784 -07 000000480 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 03:45:33.784 -07 000000480 INF: GreenLED: Using Green data: Photodiode ADC 26 --> 0.0 mW (old method), or 1.9 mW (new method). Difference = 1.9 mW
17-03-18 03:45:33.784 -07 000000480 INF: Predictive Diagnostic Log Cycle Entry Metrics: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 116, FrontChillerTemperature: 4.011254, FrontChillerHeatSinkTemperature: 0.489951, AmbientTemperature: 18.61839, FlowCellCompartmentTemperature: 21.99544, FlowCellTargetTemperature: 22, FlowCellHeatSinkTemperature: 18.30774, GreenLEDSensorTemperature: 26.08817, PhotodiodePowerAdcGreen: 26, PhotodiodePowerMwGreen: 1.927049
17-03-18 03:45:33.874 -07 000000610 INF: Y-Drift Offset assigned 0.002126916.