17-03-18 03:45:33.924 -07 000000610 INF: =================== Cycle #117 =================== 17-03-18 03:45:33.924 -07 000000610 INF: Y Motor: Entering MoveAbsStepped (target = 120609 steps, sync = True, waitForSettling = True) 17-03-18 03:45:33.924 -07 000000610 INF: Y Motor: Moving to 75.3806 mm, started at 74.8320 mm, delta = 0.5485 mm 17-03-18 03:45:33.924 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 03:45:33.924 -07 000000579 INF: FPGA: Recv YRDPOS 153256 17-03-18 03:45:33.934 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall 17-03-18 03:45:33.934 -07 000000610 INF: Y Motor: Encoder = 153256 = motor step 119731.3 = 74.8320 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 03:45:33.934 -07 000000610 INF: Y Motor: Last commanded position = 74.8526 mm (119764.2 steps), delta from last commanded position = 0.5280 mm (844.8 steps). UsingTableMove = False 17-03-18 03:45:33.934 -07 000000610 INF: Y Motor: Moving to 154379 encoder counts 17-03-18 03:45:33.934 -07 000000610 INF: FPGA: Xmit YMVTO 154379\n [Y Motor] 17-03-18 03:45:34.044 -07 000000581 INF: FPGA: Recv YMVTO 154379 878 17-03-18 03:45:34.044 -07 000000610 INF: FPGA: 'YMVTO 154379' command took 0 ms to send, 109 ms to get response, and 118 ms overall 17-03-18 03:45:34.044 -07 000000610 INF: Y Motor: Position error before settling = 0 encoder counts (0.000 mm) 17-03-18 03:45:34.044 -07 000000610 INF: Y Motor: To move from 74.832 to 75.381 (0.549 mm) should take 877 steps, but required 878 steps (0.549 mm). Slippage = 0.001 mm (0.00%). 17-03-18 03:45:34.044 -07 000000610 INF: Y Motor: FPGA move command 'YMVTO 154379' took 118 ms, distance = 0.549 mm, average velocity = 4.649 mm/sec 17-03-18 03:45:35.304 -07 000000480 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 117, FrontChillerTemperature: 3.994908, 17-03-18 03:45:36.604 -07 000000382 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-18 03:45:36.604 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 116. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1671, R2=1741, Total=3412. Warn if over 250 bubbles per interval. 17-03-18 03:45:37.044 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 03:45:37.044 -07 000000579 INF: FPGA: Recv YRDPOS 154387 17-03-18 03:45:37.054 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:45:37.054 -07 000000610 INF: Y Motor: Encoder = 154387 = motor step 120614.8 = 75.3843 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 03:45:37.084 -07 000000610 INF: Y Motor: After move to 75.380580, error = 0.003697, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm 17-03-18 03:45:37.084 -07 000000610 INF: Y Motor: Position error after settling = 8 encoder counts (0.004 mm), Delta during settling = 8 counts (0.004 mm) 17-03-18 03:45:37.084 -07 000000610 INF: Y Motor: Moved to 75.3843 after 3155 ms 17-03-18 03:45:37.084 -07 000000610 INF: =================== Cycle #117, Flow Cell Temp 60° =================== 17-03-18 03:45:37.084 -07 000000610 INF: =================== Cycle #117, Flow Cell Temp 60°, FC temperature to 60° =================== 17-03-18 03:45:37.084 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 60000000\n [FlowCellTempControl] 17-03-18 03:45:37.094 -07 000000382 INF: FPGA: Recv TEC2TEMP 17-03-18 03:45:37.094 -07 000000610 INF: FPGA: 'TEC2TEMP 0 60000000' command took 1 ms to send, 1 ms to get response, and 3 ms overall 17-03-18 03:45:37.094 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl] 17-03-18 03:45:37.094 -07 000000581 INF: FPGA: Recv TEC2EN 17-03-18 03:45:37.104 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 8 ms overall 17-03-18 03:45:37.104 -07 000000610 INF: =================== Cycle #117, Flow Cell Temp 60° =================== 17-03-18 03:45:37.104 -07 000000610 INF: =================== Cycle #117 =================== 17-03-18 03:45:37.104 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start 17-03-18 03:45:37.104 -07 000000610 INF: ReagentValve: Xmit S\r 17-03-18 03:45:37.134 -07 000000610 INF: ReagentValve: Recv 18\r 17-03-18 03:45:37.134 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 24 to 3. Moving 3 positions. 17-03-18 03:45:37.134 -07 000000610 INF: ReagentValve: Xmit +03\r 17-03-18 03:45:37.434 -07 000000610 INF: ReagentValve: Xmit B\r 17-03-18 03:45:37.454 -07 000000610 INF: ReagentValve: Recv 0278\r 17-03-18 03:45:37.454 -07 000000610 INF: ReagentValve: Move+ from 24 to 3 took 632 steps, expected 612. Error = 20 steps (3.3%) 17-03-18 03:45:37.504 -07 000000610 INF: ReagentValve: Xmit S\r 17-03-18 03:45:37.524 -07 000000610 INF: ReagentValve: Recv 03\r 17-03-18 03:45:37.524 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating 17-03-18 03:45:37.624 -07 000000610 INF: =================== Cycle #117, Pumping Reagent PR2 (3) =================== 17-03-18 03:45:37.624 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1 17-03-18 03:45:37.624 -07 000000610 INF: LanePump: Xmit /1?\r 17-03-18 03:45:37.654 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n 17-03-18 03:45:37.654 -07 000000610 INF: LanePump: Current Position of Pump is: 0 17-03-18 03:45:37.654 -07 000000610 INF: =================== Cycle #117, Pumping Reagent PR2 (3), Aspirating port InputPort =================== 17-03-18 03:45:37.784 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r 17-03-18 03:45:37.824 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n 17-03-18 03:45:40.684 -07 000000382 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 117, FrontChillerTemperature: 3.989471, 17-03-18 03:45:40.954 -07 000000610 INF: LanePump: Xmit /1Q\r 17-03-18 03:45:40.984 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n 17-03-18 03:45:41.404 -07 000000610 INF: LanePump: Xmit /1Q\r 17-03-18 03:45:41.434 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n 17-03-18 03:45:41.604 -07 000000382 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 5 R1 8 17-03-18 03:45:41.604 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 116. Bubbles during last 5000 ms interval: R1=8, R2=5, Total=13. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1679, R2=1746, Total=3425. Warn if over 250 bubbles per interval. 17-03-18 03:45:41.854 -07 000000610 INF: LanePump: Xmit /1Q\r 17-03-18 03:45:41.884 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n 17-03-18 03:45:41.884 -07 000000610 INF: LanePump: Waited 4059 ms for pump motion to complete 17-03-18 03:45:41.884 -07 000000610 INF: =================== Cycle #117, Pumping Reagent PR2 (3) =================== 17-03-18 03:45:42.014 -07 000000610 INF: LanePump: Xmit /1?\r 17-03-18 03:45:42.044 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n 17-03-18 03:45:42.044 -07 000000610 INF: LanePump: Current Position of Pump is: 720 17-03-18 03:45:42.174 -07 000000610 INF: LanePump: Xmit /1?\r 17-03-18 03:45:42.204 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n 17-03-18 03:45:42.204 -07 000000610 INF: LanePump: Current Position of Pump is: 720 17-03-18 03:45:42.204 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution 17-03-18 03:45:42.334 -07 000000610 INF: LanePump: Xmit /1IR\r 17-03-18 03:45:42.364 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n 17-03-18 03:45:42.794 -07 000000610 INF: LanePump: Xmit /1Q\r 17-03-18 03:45:42.824 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n 17-03-18 03:45:42.824 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete 17-03-18 03:45:42.824 -07 000000610 INF: =================== Cycle #117 =================== 17-03-18 03:45:44.044 -07 000000610 INF: AsyncDelayTimer waited 1218ms 17-03-18 03:45:44.044 -07 000000610 INF: ReagentValve: Go to position 4 - PumpToFlowcell start 17-03-18 03:45:44.044 -07 000000610 INF: ReagentValve: Xmit S\r 17-03-18 03:45:44.064 -07 000000610 INF: ReagentValve: Recv 03\r 17-03-18 03:45:44.064 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 3 to 4. Moving 1 positions. 17-03-18 03:45:44.064 -07 000000610 INF: ReagentValve: Xmit +04\r 17-03-18 03:45:44.204 -07 000000610 INF: ReagentValve: Xmit B\r 17-03-18 03:45:44.224 -07 000000610 INF: ReagentValve: Recv 00CD\r 17-03-18 03:45:44.224 -07 000000610 INF: ReagentValve: Move+ from 3 to 4 took 205 steps, expected 204. Error = 1 steps (0.5%) 17-03-18 03:45:44.274 -07 000000610 INF: ReagentValve: Xmit S\r 17-03-18 03:45:44.294 -07 000000610 INF: ReagentValve: Recv 04\r 17-03-18 03:45:44.294 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating 17-03-18 03:45:44.394 -07 000000610 INF: =================== Cycle #117, Pumping Reagent CMS (4) =================== 17-03-18 03:45:44.394 -07 000000610 INF: LanePump: Pumping from 4, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1 17-03-18 03:45:44.394 -07 000000610 INF: LanePump: Xmit /1?\r 17-03-18 03:45:44.424 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n 17-03-18 03:45:44.424 -07 000000610 INF: LanePump: Current Position of Pump is: 720 17-03-18 03:45:44.424 -07 000000610 INF: =================== Cycle #117, Pumping Reagent CMS (4), Aspirating port InputPort =================== 17-03-18 03:45:44.554 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r 17-03-18 03:45:44.594 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n 17-03-18 03:45:46.034 -07 000000610 INF: LanePump: Xmit /1Q\r 17-03-18 03:45:46.044 -07 000000382 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 117, FrontChillerTemperature: 4.007176, 17-03-18 03:45:46.064 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n 17-03-18 03:45:46.484 -07 000000610 INF: LanePump: Xmit /1Q\r 17-03-18 03:45:46.514 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n 17-03-18 03:45:46.514 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete 17-03-18 03:45:46.514 -07 000000610 INF: =================== Cycle #117, Pumping Reagent CMS (4) =================== 17-03-18 03:45:46.604 -07 000000382 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 2 R1 1 17-03-18 03:45:46.604 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 116. Bubbles during last 5000 ms interval: R1=1, R2=2, Total=3. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1680, R2=1748, Total=3428. Warn if over 250 bubbles per interval. 17-03-18 03:45:46.644 -07 000000610 INF: LanePump: Xmit /1?\r 17-03-18 03:45:46.674 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n 17-03-18 03:45:46.674 -07 000000610 INF: LanePump: Current Position of Pump is: 990 17-03-18 03:45:46.804 -07 000000610 INF: LanePump: Xmit /1?\r 17-03-18 03:45:46.834 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n 17-03-18 03:45:46.834 -07 000000610 INF: LanePump: Current Position of Pump is: 990 17-03-18 03:45:46.834 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution 17-03-18 03:45:46.964 -07 000000610 INF: LanePump: Xmit /1IR\r 17-03-18 03:45:46.994 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n 17-03-18 03:45:47.424 -07 000000610 INF: LanePump: Xmit /1Q\r 17-03-18 03:45:47.454 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n 17-03-18 03:45:47.454 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete 17-03-18 03:45:47.454 -07 000000610 INF: =================== Cycle #117 =================== 17-03-18 03:45:48.674 -07 000000610 INF: AsyncDelayTimer waited 1219ms 17-03-18 03:45:48.674 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start 17-03-18 03:45:48.674 -07 000000610 INF: ReagentValve: Xmit S\r 17-03-18 03:45:48.694 -07 000000610 INF: ReagentValve: Recv 04\r 17-03-18 03:45:48.694 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 4 to 3. Moving 1 positions. 17-03-18 03:45:48.694 -07 000000610 INF: ReagentValve: Xmit -03\r 17-03-18 03:45:48.844 -07 000000610 INF: ReagentValve: Xmit B\r 17-03-18 03:45:48.864 -07 000000610 INF: ReagentValve: Recv 00E1\r 17-03-18 03:45:48.864 -07 000000610 INF: ReagentValve: Move- from 4 to 3 took 225 steps, expected 204. Error = 21 steps (10.3%) 17-03-18 03:45:48.914 -07 000000610 INF: ReagentValve: Xmit S\r 17-03-18 03:45:48.934 -07 000000610 INF: ReagentValve: Recv 03\r 17-03-18 03:45:48.934 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating 17-03-18 03:45:49.034 -07 000000610 INF: =================== Cycle #117, Pumping Reagent PR2 (3) =================== 17-03-18 03:45:49.034 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1 17-03-18 03:45:49.034 -07 000000610 INF: LanePump: Xmit /1?\r 17-03-18 03:45:49.064 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n 17-03-18 03:45:49.064 -07 000000610 INF: LanePump: Current Position of Pump is: 990 17-03-18 03:45:49.064 -07 000000610 INF: =================== Cycle #117, Pumping Reagent PR2 (3), Aspirating port InputPort =================== 17-03-18 03:45:49.194 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r 17-03-18 03:45:49.234 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n 17-03-18 03:45:50.104 -07 000000610 INF: LanePump: Xmit /1Q\r 17-03-18 03:45:50.134 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n 17-03-18 03:45:50.134 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete 17-03-18 03:45:50.134 -07 000000610 INF: =================== Cycle #117, Pumping Reagent PR2 (3) =================== 17-03-18 03:45:50.264 -07 000000610 INF: LanePump: Xmit /1?\r 17-03-18 03:45:50.294 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n 17-03-18 03:45:50.294 -07 000000610 INF: LanePump: Current Position of Pump is: 1110 17-03-18 03:45:50.424 -07 000000610 INF: LanePump: Xmit /1?\r 17-03-18 03:45:50.454 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n 17-03-18 03:45:50.454 -07 000000610 INF: LanePump: Current Position of Pump is: 1110 17-03-18 03:45:50.454 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution 17-03-18 03:45:50.584 -07 000000610 INF: LanePump: Xmit /1IR\r 17-03-18 03:45:50.614 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n 17-03-18 03:45:51.044 -07 000000610 INF: LanePump: Xmit /1Q\r 17-03-18 03:45:51.074 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n 17-03-18 03:45:51.074 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete 17-03-18 03:45:51.074 -07 000000610 INF: =================== Cycle #117 =================== 17-03-18 03:45:51.074 -07 000000608 INF: WaitCommand(10000) start 17-03-18 03:45:51.074 -07 000000606 INF: =================== Dispense to DispenseAndWait =================== 17-03-18 03:45:51.074 -07 000000606 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort =================== 17-03-18 03:45:52.294 -07 000000606 INF: AsyncDelayTimer waited 1216ms 17-03-18 03:45:52.294 -07 000000606 INF: LanePump: Xmit /1?\r 17-03-18 03:45:52.324 -07 000000437 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 2 R1 1 17-03-18 03:45:52.324 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 116. Bubbles during last 5000 ms interval: R1=1, R2=2, Total=3. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1681, R2=1750, Total=3431. Warn if over 250 bubbles per interval. 17-03-18 03:45:52.324 -07 000000455 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 117, FrontChillerTemperature: 4.012614, 17-03-18 03:45:52.334 -07 000000606 INF: LanePump: Recv /0`1110(0x03)\r\n 17-03-18 03:45:52.334 -07 000000606 INF: LanePump: Current Position of Pump is: 1110 17-03-18 03:45:52.464 -07 000000606 INF: LanePump: Xmit /1V1500OA0R\r 17-03-18 03:45:52.504 -07 000000606 INF: LanePump: Recv /0@(0x03)\r\n 17-03-18 03:45:54.034 -07 000000606 INF: LanePump: Xmit /1Q\r 17-03-18 03:45:54.064 -07 000000606 INF: LanePump: Recv /0@(0x03)\r\n 17-03-18 03:45:54.484 -07 000000606 INF: LanePump: Xmit /1Q\r 17-03-18 03:45:54.514 -07 000000606 INF: LanePump: Recv /0`(0x03)\r\n 17-03-18 03:45:54.514 -07 000000606 INF: LanePump: Waited 2009 ms for pump motion to complete 17-03-18 03:45:54.514 -07 000000606 INF: =================== Dispense to DispenseAndWait =================== 17-03-18 03:45:54.514 -07 000000606 INF: =================== =================== 17-03-18 03:45:56.604 -07 000000474 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-18 03:45:56.604 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 116. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1681, R2=1750, Total=3431. Warn if over 250 bubbles per interval. 17-03-18 03:45:57.684 -07 000000606 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 117, FrontChillerTemperature: 3.990831, 17-03-18 03:46:01.084 -07 000000608 INF: WaitCommand(10000) end 17-03-18 03:46:01.084 -07 000000610 INF: =================== Cycle #117, Pumping Reagent PR2 (3) =================== 17-03-18 03:46:01.084 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 250 µL, calling command Pumping to Flow Cell #1 17-03-18 03:46:01.084 -07 000000610 INF: LanePump: Xmit /1?\r 17-03-18 03:46:01.114 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n 17-03-18 03:46:01.114 -07 000000610 INF: LanePump: Current Position of Pump is: 0 17-03-18 03:46:01.114 -07 000000610 INF: =================== Cycle #117, Pumping Reagent PR2 (3), Aspirating port InputPort =================== 17-03-18 03:46:01.244 -07 000000610 INF: LanePump: Xmit /1V400IP1500R\r 17-03-18 03:46:01.284 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n 17-03-18 03:46:01.604 -07 000000608 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-18 03:46:01.604 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 116. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1681, R2=1750, Total=3431. Warn if over 250 bubbles per interval. 17-03-18 03:46:03.044 -07 000000455 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 117, FrontChillerTemperature: 3.983999, 17-03-18 03:46:06.604 -07 000000569 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-18 03:46:06.604 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 116. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1681, R2=1750, Total=3431. Warn if over 250 bubbles per interval. 17-03-18 03:46:07.414 -07 000000610 INF: LanePump: Xmit /1Q\r 17-03-18 03:46:07.444 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n 17-03-18 03:46:07.864 -07 000000610 INF: LanePump: Xmit /1Q\r 17-03-18 03:46:07.894 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n 17-03-18 03:46:08.314 -07 000000610 INF: LanePump: Xmit /1Q\r 17-03-18 03:46:08.344 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n 17-03-18 03:46:08.404 -07 000000382 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 117, FrontChillerTemperature: 3.970374, 17-03-18 03:46:08.764 -07 000000610 INF: LanePump: Xmit /1Q\r 17-03-18 03:46:08.794 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n 17-03-18 03:46:09.214 -07 000000610 INF: LanePump: Xmit /1Q\r 17-03-18 03:46:09.244 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n 17-03-18 03:46:09.244 -07 000000610 INF: LanePump: Waited 7959 ms for pump motion to complete 17-03-18 03:46:09.244 -07 000000610 INF: =================== Cycle #117, Pumping Reagent PR2 (3) =================== 17-03-18 03:46:09.374 -07 000000610 INF: LanePump: Xmit /1?\r 17-03-18 03:46:09.404 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n 17-03-18 03:46:09.404 -07 000000610 INF: LanePump: Current Position of Pump is: 1500 17-03-18 03:46:09.534 -07 000000610 INF: LanePump: Xmit /1?\r 17-03-18 03:46:09.564 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n 17-03-18 03:46:09.564 -07 000000610 INF: LanePump: Current Position of Pump is: 1500 17-03-18 03:46:09.564 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution 17-03-18 03:46:09.694 -07 000000610 INF: LanePump: Xmit /1IR\r 17-03-18 03:46:09.724 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n 17-03-18 03:46:10.154 -07 000000610 INF: LanePump: Xmit /1Q\r 17-03-18 03:46:10.184 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n 17-03-18 03:46:10.184 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete 17-03-18 03:46:10.184 -07 000000610 INF: =================== Cycle #117 =================== 17-03-18 03:46:11.404 -07 000000610 INF: AsyncDelayTimer waited 1219ms 17-03-18 03:46:11.404 -07 000000610 INF: ReagentValve: Go to position 1 - PumpToFlowcell start 17-03-18 03:46:11.404 -07 000000610 INF: ReagentValve: Xmit S\r 17-03-18 03:46:11.424 -07 000000610 INF: ReagentValve: Recv 03\r 17-03-18 03:46:11.424 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 1. Moving 2 positions. 17-03-18 03:46:11.424 -07 000000610 INF: ReagentValve: Xmit -01\r 17-03-18 03:46:11.604 -07 000000455 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-18 03:46:11.604 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 116. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1681, R2=1750, Total=3431. Warn if over 250 bubbles per interval. 17-03-18 03:46:11.634 -07 000000610 INF: ReagentValve: Xmit B\r 17-03-18 03:46:11.654 -07 000000610 INF: ReagentValve: Recv 0198\r 17-03-18 03:46:11.654 -07 000000610 INF: ReagentValve: Move- from 3 to 1 took 408 steps, expected 408. Error = 0 steps (0.0%) 17-03-18 03:46:11.704 -07 000000610 INF: ReagentValve: Xmit S\r 17-03-18 03:46:11.724 -07 000000610 INF: ReagentValve: Recv 01\r 17-03-18 03:46:11.724 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating 17-03-18 03:46:11.824 -07 000000610 INF: =================== Cycle #117, Pumping Reagent IMT (1) =================== 17-03-18 03:46:11.824 -07 000000610 INF: LanePump: Pumping from 1, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1 17-03-18 03:46:11.824 -07 000000610 INF: LanePump: Xmit /1?\r 17-03-18 03:46:11.864 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n 17-03-18 03:46:11.864 -07 000000610 INF: LanePump: Current Position of Pump is: 1500 17-03-18 03:46:11.864 -07 000000610 INF: =================== Cycle #117, Pumping Reagent IMT (1), Aspirating port InputPort =================== 17-03-18 03:46:11.994 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r 17-03-18 03:46:12.034 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n 17-03-18 03:46:13.474 -07 000000610 INF: LanePump: Xmit /1Q\r 17-03-18 03:46:13.504 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n 17-03-18 03:46:13.764 -07 000000581 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 117, FrontChillerTemperature: 3.993549, 17-03-18 03:46:13.924 -07 000000610 INF: LanePump: Xmit /1Q\r 17-03-18 03:46:13.954 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n 17-03-18 03:46:13.954 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete 17-03-18 03:46:13.954 -07 000000610 INF: =================== Cycle #117, Pumping Reagent IMT (1) =================== 17-03-18 03:46:14.084 -07 000000610 INF: LanePump: Xmit /1?\r 17-03-18 03:46:14.114 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n 17-03-18 03:46:14.114 -07 000000610 INF: LanePump: Current Position of Pump is: 1770 17-03-18 03:46:14.244 -07 000000610 INF: LanePump: Xmit /1?\r 17-03-18 03:46:14.274 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n 17-03-18 03:46:14.274 -07 000000610 INF: LanePump: Current Position of Pump is: 1770 17-03-18 03:46:14.274 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution 17-03-18 03:46:14.404 -07 000000610 INF: LanePump: Xmit /1IR\r 17-03-18 03:46:14.434 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n 17-03-18 03:46:14.864 -07 000000610 INF: LanePump: Xmit /1Q\r 17-03-18 03:46:14.894 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n 17-03-18 03:46:14.894 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete 17-03-18 03:46:14.894 -07 000000610 INF: =================== Cycle #117 =================== 17-03-18 03:46:16.114 -07 000000610 INF: AsyncDelayTimer waited 1217ms 17-03-18 03:46:16.114 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start 17-03-18 03:46:16.114 -07 000000610 INF: ReagentValve: Xmit S\r 17-03-18 03:46:16.134 -07 000000610 INF: ReagentValve: Recv 01\r 17-03-18 03:46:16.134 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 1 to 3. Moving 2 positions. 17-03-18 03:46:16.134 -07 000000610 INF: ReagentValve: Xmit +03\r 17-03-18 03:46:16.364 -07 000000610 INF: ReagentValve: Xmit B\r 17-03-18 03:46:16.384 -07 000000610 INF: ReagentValve: Recv 01AC\r 17-03-18 03:46:16.384 -07 000000610 INF: ReagentValve: Move+ from 1 to 3 took 428 steps, expected 408. Error = 20 steps (4.9%) 17-03-18 03:46:16.434 -07 000000610 INF: ReagentValve: Xmit S\r 17-03-18 03:46:16.454 -07 000000610 INF: ReagentValve: Recv 03\r 17-03-18 03:46:16.454 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating 17-03-18 03:46:16.554 -07 000000610 INF: =================== Cycle #117, Pumping Reagent PR2 (3) =================== 17-03-18 03:46:16.554 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1 17-03-18 03:46:16.554 -07 000000610 INF: LanePump: Xmit /1?\r 17-03-18 03:46:16.584 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n 17-03-18 03:46:16.584 -07 000000610 INF: LanePump: Current Position of Pump is: 1770 17-03-18 03:46:16.584 -07 000000610 INF: =================== Cycle #117, Pumping Reagent PR2 (3), Aspirating port InputPort =================== 17-03-18 03:46:16.604 -07 000000437 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 1 17-03-18 03:46:16.604 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 116. Bubbles during last 5000 ms interval: R1=1, R2=0, Total=1. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1682, R2=1750, Total=3432. Warn if over 250 bubbles per interval. 17-03-18 03:46:16.714 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r 17-03-18 03:46:16.754 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n 17-03-18 03:46:17.624 -07 000000610 INF: LanePump: Xmit /1Q\r 17-03-18 03:46:17.654 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n 17-03-18 03:46:17.654 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete 17-03-18 03:46:17.654 -07 000000610 INF: =================== Cycle #117, Pumping Reagent PR2 (3) =================== 17-03-18 03:46:17.784 -07 000000610 INF: LanePump: Xmit /1?\r 17-03-18 03:46:17.814 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n 17-03-18 03:46:17.814 -07 000000610 INF: LanePump: Current Position of Pump is: 1890 17-03-18 03:46:17.944 -07 000000610 INF: LanePump: Xmit /1?\r 17-03-18 03:46:17.974 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n 17-03-18 03:46:17.974 -07 000000610 INF: LanePump: Current Position of Pump is: 1890 17-03-18 03:46:17.974 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution 17-03-18 03:46:18.104 -07 000000610 INF: LanePump: Xmit /1IR\r 17-03-18 03:46:18.134 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n 17-03-18 03:46:18.564 -07 000000610 INF: LanePump: Xmit /1Q\r 17-03-18 03:46:18.594 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n 17-03-18 03:46:18.594 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete 17-03-18 03:46:18.594 -07 000000610 INF: =================== Cycle #117 =================== 17-03-18 03:46:18.594 -07 000000610 INF: =================== Cycle #117, Flow Cell Temp 65° =================== 17-03-18 03:46:18.594 -07 000000610 INF: =================== Cycle #117, Flow Cell Temp 65°, FC temperature to 65° =================== 17-03-18 03:46:18.594 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 65000000\n [FlowCellTempControl] 17-03-18 03:46:18.594 -07 000000569 INF: FPGA: Recv TEC2TEMP 17-03-18 03:46:18.604 -07 000000610 INF: FPGA: 'TEC2TEMP 0 65000000' command took 1 ms to send, 0 ms to get response, and 5 ms overall 17-03-18 03:46:18.604 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl] 17-03-18 03:46:18.604 -07 000000382 INF: FPGA: Recv TEC2EN 17-03-18 03:46:18.614 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:46:18.614 -07 000000610 INF: =================== Cycle #117, Flow Cell Temp 65° =================== 17-03-18 03:46:18.614 -07 000000610 INF: =================== Cycle #117 =================== 17-03-18 03:46:18.614 -07 000000610 INF: WaitCommand(30000) start 17-03-18 03:46:19.124 -07 000000606 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 117, FrontChillerTemperature: 3.96762, 17-03-18 03:46:21.604 -07 000000569 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 0 17-03-18 03:46:21.604 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 116. Bubbles during last 5000 ms interval: R1=0, R2=1, Total=1. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1682, R2=1751, Total=3433. Warn if over 250 bubbles per interval. 17-03-18 03:46:24.484 -07 000000437 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 117, FrontChillerTemperature: 4.015368, 17-03-18 03:46:26.604 -07 000000382 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-18 03:46:26.604 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 116. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1682, R2=1751, Total=3433. Warn if over 250 bubbles per interval. 17-03-18 03:46:29.844 -07 000000437 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 117, FrontChillerTemperature: 4.037119, 17-03-18 03:46:31.604 -07 000000569 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-18 03:46:31.604 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 116. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1682, R2=1751, Total=3433. Warn if over 250 bubbles per interval. 17-03-18 03:46:35.204 -07 000000437 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 117, FrontChillerTemperature: 4.003063, 17-03-18 03:46:36.604 -07 000000437 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-18 03:46:36.604 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 116. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1682, R2=1751, Total=3433. Warn if over 250 bubbles per interval. 17-03-18 03:46:40.564 -07 000000581 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 117, FrontChillerTemperature: 4.019446, 17-03-18 03:46:41.604 -07 000000437 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-18 03:46:41.604 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 116. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1682, R2=1751, Total=3433. Warn if over 250 bubbles per interval. 17-03-18 03:46:45.924 -07 000000608 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 117, FrontChillerTemperature: 4.001704, 17-03-18 03:46:46.604 -07 000000608 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-18 03:46:46.604 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 116. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1682, R2=1751, Total=3433. Warn if over 250 bubbles per interval. 17-03-18 03:46:48.624 -07 000000610 INF: WaitCommand(30000) end 17-03-18 03:46:48.624 -07 000000610 INF: =================== Cycle #117, Pumping Reagent PR2 (3) =================== 17-03-18 03:46:48.624 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 5 µL, calling command Pumping to Flow Cell #1 17-03-18 03:46:48.724 -07 000000610 INF: LanePump: Xmit /1?\r 17-03-18 03:46:48.754 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n 17-03-18 03:46:48.754 -07 000000610 INF: LanePump: Current Position of Pump is: 1890 17-03-18 03:46:48.754 -07 000000610 INF: =================== Cycle #117, Pumping Reagent PR2 (3), Aspirating port InputPort =================== 17-03-18 03:46:48.884 -07 000000610 INF: LanePump: Xmit /1V400IP30R\r 17-03-18 03:46:48.924 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n 17-03-18 03:46:49.464 -07 000000610 INF: LanePump: Xmit /1Q\r 17-03-18 03:46:49.494 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n 17-03-18 03:46:49.494 -07 000000610 INF: LanePump: Waited 569 ms for pump motion to complete 17-03-18 03:46:49.494 -07 000000610 INF: =================== Cycle #117, Pumping Reagent PR2 (3) =================== 17-03-18 03:46:49.624 -07 000000610 INF: LanePump: Xmit /1?\r 17-03-18 03:46:49.654 -07 000000610 INF: LanePump: Recv /0`1920(0x03)\r\n 17-03-18 03:46:49.654 -07 000000610 INF: LanePump: Current Position of Pump is: 1920 17-03-18 03:46:49.784 -07 000000610 INF: LanePump: Xmit /1?\r 17-03-18 03:46:49.814 -07 000000610 INF: LanePump: Recv /0`1920(0x03)\r\n 17-03-18 03:46:49.814 -07 000000610 INF: LanePump: Current Position of Pump is: 1920 17-03-18 03:46:49.814 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution 17-03-18 03:46:49.944 -07 000000610 INF: LanePump: Xmit /1IR\r 17-03-18 03:46:49.974 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n 17-03-18 03:46:50.404 -07 000000610 INF: LanePump: Xmit /1Q\r 17-03-18 03:46:50.434 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n 17-03-18 03:46:50.434 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete 17-03-18 03:46:50.434 -07 000000610 INF: =================== Cycle #117 =================== 17-03-18 03:46:50.434 -07 000000606 INF: WaitCommand(30000) start 17-03-18 03:46:50.434 -07 000000608 INF: =================== Dispense to DispenseAndWait =================== 17-03-18 03:46:50.434 -07 000000608 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort =================== 17-03-18 03:46:51.284 -07 000000437 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 117, FrontChillerTemperature: 3.990831, 17-03-18 03:46:51.604 -07 000000581 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-18 03:46:51.604 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 116. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1682, R2=1751, Total=3433. Warn if over 250 bubbles per interval. 17-03-18 03:46:51.654 -07 000000608 INF: AsyncDelayTimer waited 1216ms 17-03-18 03:46:51.654 -07 000000608 INF: LanePump: Xmit /1?\r 17-03-18 03:46:51.684 -07 000000608 INF: LanePump: Recv /0`1920(0x03)\r\n 17-03-18 03:46:51.684 -07 000000608 INF: LanePump: Current Position of Pump is: 1920 17-03-18 03:46:51.814 -07 000000608 INF: LanePump: Xmit /1V1500OA0R\r 17-03-18 03:46:51.854 -07 000000608 INF: LanePump: Recv /0@(0x03)\r\n 17-03-18 03:46:54.194 -07 000000608 INF: LanePump: Xmit /1Q\r 17-03-18 03:46:54.224 -07 000000608 INF: LanePump: Recv /0@(0x03)\r\n 17-03-18 03:46:54.644 -07 000000608 INF: LanePump: Xmit /1Q\r 17-03-18 03:46:54.674 -07 000000608 INF: LanePump: Recv /0`(0x03)\r\n 17-03-18 03:46:54.674 -07 000000608 INF: LanePump: Waited 2819 ms for pump motion to complete 17-03-18 03:46:54.674 -07 000000608 INF: =================== Dispense to DispenseAndWait =================== 17-03-18 03:46:54.674 -07 000000608 INF: =================== =================== 17-03-18 03:46:56.604 -07 000000581 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-18 03:46:56.604 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 116. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1682, R2=1751, Total=3433. Warn if over 250 bubbles per interval. 17-03-18 03:46:56.644 -07 000000438 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 117, FrontChillerTemperature: 4.042558, 17-03-18 03:47:01.604 -07 000000569 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-18 03:47:01.604 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 116. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1682, R2=1751, Total=3433. Warn if over 250 bubbles per interval. 17-03-18 03:47:02.004 -07 000000585 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 117, FrontChillerTemperature: 4.053471, 17-03-18 03:47:06.604 -07 000000474 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-18 03:47:06.604 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 116. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1682, R2=1751, Total=3433. Warn if over 250 bubbles per interval. 17-03-18 03:47:07.364 -07 000000474 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 117, FrontChillerTemperature: 4.030322, 17-03-18 03:47:11.604 -07 000000608 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-18 03:47:11.604 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 116. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1682, R2=1751, Total=3433. Warn if over 250 bubbles per interval. 17-03-18 03:47:12.724 -07 000000608 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 117, FrontChillerTemperature: 4.005817, 17-03-18 03:47:16.604 -07 000000585 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-18 03:47:16.604 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 116. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1682, R2=1751, Total=3433. Warn if over 250 bubbles per interval. 17-03-18 03:47:18.084 -07 000000591 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 117, FrontChillerTemperature: 3.997626, 17-03-18 03:47:20.444 -07 000000606 INF: WaitCommand(30000) end 17-03-18 03:47:20.444 -07 000000610 INF: =================== Cycle #117, Flow Cell Temp 22° =================== 17-03-18 03:47:20.444 -07 000000610 INF: =================== Cycle #117, Flow Cell Temp 22°, FC temperature to 22° =================== 17-03-18 03:47:20.514 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl] 17-03-18 03:47:20.514 -07 000000382 INF: FPGA: Recv TEC2EN 17-03-18 03:47:20.524 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:47:20.524 -07 000000610 INF: =================== Cycle #117, Flow Cell Temp 22° =================== 17-03-18 03:47:20.524 -07 000000610 INF: =================== Cycle #117 =================== 17-03-18 03:47:20.524 -07 000000610 INF: =================== Cycle #117, Pumping Reagent PR2 (3) =================== 17-03-18 03:47:20.524 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1 17-03-18 03:47:20.524 -07 000000610 INF: LanePump: Xmit /1?\r 17-03-18 03:47:20.564 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n 17-03-18 03:47:20.564 -07 000000610 INF: LanePump: Current Position of Pump is: 0 17-03-18 03:47:20.564 -07 000000610 INF: =================== Cycle #117, Pumping Reagent PR2 (3), Aspirating port InputPort =================== 17-03-18 03:47:20.694 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r 17-03-18 03:47:20.734 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n 17-03-18 03:47:21.604 -07 000000474 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-18 03:47:21.604 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 116. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1682, R2=1751, Total=3433. Warn if over 250 bubbles per interval. 17-03-18 03:47:23.444 -07 000000438 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 117, FrontChillerTemperature: 3.974486, 17-03-18 03:47:23.864 -07 000000610 INF: LanePump: Xmit /1Q\r 17-03-18 03:47:23.894 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n 17-03-18 03:47:24.314 -07 000000610 INF: LanePump: Xmit /1Q\r 17-03-18 03:47:24.344 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n 17-03-18 03:47:24.764 -07 000000610 INF: LanePump: Xmit /1Q\r 17-03-18 03:47:24.794 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n 17-03-18 03:47:24.794 -07 000000610 INF: LanePump: Waited 4059 ms for pump motion to complete 17-03-18 03:47:24.794 -07 000000610 INF: =================== Cycle #117, Pumping Reagent PR2 (3) =================== 17-03-18 03:47:24.924 -07 000000610 INF: LanePump: Xmit /1?\r 17-03-18 03:47:24.954 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n 17-03-18 03:47:24.954 -07 000000610 INF: LanePump: Current Position of Pump is: 720 17-03-18 03:47:25.084 -07 000000610 INF: LanePump: Xmit /1?\r 17-03-18 03:47:25.114 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n 17-03-18 03:47:25.114 -07 000000610 INF: LanePump: Current Position of Pump is: 720 17-03-18 03:47:25.114 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution 17-03-18 03:47:25.244 -07 000000610 INF: LanePump: Xmit /1IR\r 17-03-18 03:47:25.274 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n 17-03-18 03:47:25.704 -07 000000610 INF: LanePump: Xmit /1Q\r 17-03-18 03:47:25.734 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n 17-03-18 03:47:25.734 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete 17-03-18 03:47:25.734 -07 000000610 INF: =================== Cycle #117 =================== 17-03-18 03:47:26.604 -07 000000382 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 1 17-03-18 03:47:26.604 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 116. Bubbles during last 5000 ms interval: R1=1, R2=1, Total=2. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1683, R2=1752, Total=3435. Warn if over 250 bubbles per interval. 17-03-18 03:47:26.954 -07 000000610 INF: AsyncDelayTimer waited 1219ms 17-03-18 03:47:26.954 -07 000000610 INF: ReagentValve: Go to position 2 - PumpToFlowcell start 17-03-18 03:47:26.954 -07 000000610 INF: ReagentValve: Xmit S\r 17-03-18 03:47:26.974 -07 000000610 INF: ReagentValve: Recv 03\r 17-03-18 03:47:26.974 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 2. Moving 1 positions. 17-03-18 03:47:26.974 -07 000000610 INF: ReagentValve: Xmit -02\r 17-03-18 03:47:27.124 -07 000000610 INF: ReagentValve: Xmit B\r 17-03-18 03:47:27.144 -07 000000610 INF: ReagentValve: Recv 00E3\r 17-03-18 03:47:27.144 -07 000000610 INF: ReagentValve: Move- from 3 to 2 took 227 steps, expected 204. Error = 23 steps (11.3%) 17-03-18 03:47:27.194 -07 000000610 INF: ReagentValve: Xmit S\r 17-03-18 03:47:27.214 -07 000000610 INF: ReagentValve: Recv 02\r 17-03-18 03:47:27.214 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating 17-03-18 03:47:27.314 -07 000000610 INF: =================== Cycle #117, Pumping Reagent USM (2) =================== 17-03-18 03:47:27.314 -07 000000610 INF: LanePump: Pumping from 2, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1 17-03-18 03:47:27.314 -07 000000610 INF: LanePump: Xmit /1?\r 17-03-18 03:47:27.344 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n 17-03-18 03:47:27.344 -07 000000610 INF: LanePump: Current Position of Pump is: 720 17-03-18 03:47:27.344 -07 000000610 INF: =================== Cycle #117, Pumping Reagent USM (2), Aspirating port InputPort =================== 17-03-18 03:47:27.474 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r 17-03-18 03:47:27.514 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n 17-03-18 03:47:28.804 -07 000000474 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 117, FrontChillerTemperature: 3.974486, 17-03-18 03:47:28.954 -07 000000610 INF: LanePump: Xmit /1Q\r 17-03-18 03:47:28.984 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n 17-03-18 03:47:29.404 -07 000000610 INF: LanePump: Xmit /1Q\r 17-03-18 03:47:29.434 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n 17-03-18 03:47:29.434 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete 17-03-18 03:47:29.434 -07 000000610 INF: =================== Cycle #117, Pumping Reagent USM (2) =================== 17-03-18 03:47:29.564 -07 000000610 INF: LanePump: Xmit /1?\r 17-03-18 03:47:29.594 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n 17-03-18 03:47:29.594 -07 000000610 INF: LanePump: Current Position of Pump is: 990 17-03-18 03:47:29.724 -07 000000610 INF: LanePump: Xmit /1?\r 17-03-18 03:47:29.754 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n 17-03-18 03:47:29.754 -07 000000610 INF: LanePump: Current Position of Pump is: 990 17-03-18 03:47:29.754 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution 17-03-18 03:47:29.884 -07 000000610 INF: LanePump: Xmit /1IR\r 17-03-18 03:47:29.914 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n 17-03-18 03:47:30.344 -07 000000610 INF: LanePump: Xmit /1Q\r 17-03-18 03:47:30.374 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n 17-03-18 03:47:30.374 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete 17-03-18 03:47:30.374 -07 000000610 INF: =================== Cycle #117 =================== 17-03-18 03:47:31.594 -07 000000610 INF: AsyncDelayTimer waited 1220ms 17-03-18 03:47:31.594 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start 17-03-18 03:47:31.594 -07 000000610 INF: ReagentValve: Xmit S\r 17-03-18 03:47:31.604 -07 000000382 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-18 03:47:31.604 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 116. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1683, R2=1752, Total=3435. Warn if over 250 bubbles per interval. 17-03-18 03:47:31.614 -07 000000610 INF: ReagentValve: Recv 02\r 17-03-18 03:47:31.614 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 2 to 3. Moving 1 positions. 17-03-18 03:47:31.614 -07 000000610 INF: ReagentValve: Xmit +03\r 17-03-18 03:47:31.764 -07 000000610 INF: ReagentValve: Xmit B\r 17-03-18 03:47:31.784 -07 000000610 INF: ReagentValve: Recv 00E3\r 17-03-18 03:47:31.784 -07 000000610 INF: ReagentValve: Move+ from 2 to 3 took 227 steps, expected 204. Error = 23 steps (11.3%) 17-03-18 03:47:31.834 -07 000000610 INF: ReagentValve: Xmit S\r 17-03-18 03:47:31.854 -07 000000610 INF: ReagentValve: Recv 03\r 17-03-18 03:47:31.854 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating 17-03-18 03:47:31.954 -07 000000610 INF: =================== Cycle #117, Pumping Reagent PR2 (3) =================== 17-03-18 03:47:31.954 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1 17-03-18 03:47:31.954 -07 000000610 INF: LanePump: Xmit /1?\r 17-03-18 03:47:31.984 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n 17-03-18 03:47:31.984 -07 000000610 INF: LanePump: Current Position of Pump is: 990 17-03-18 03:47:31.984 -07 000000610 INF: =================== Cycle #117, Pumping Reagent PR2 (3), Aspirating port InputPort =================== 17-03-18 03:47:32.114 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r 17-03-18 03:47:32.154 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n 17-03-18 03:47:33.024 -07 000000610 INF: LanePump: Xmit /1Q\r 17-03-18 03:47:33.054 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n 17-03-18 03:47:33.054 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete 17-03-18 03:47:33.054 -07 000000610 INF: =================== Cycle #117, Pumping Reagent PR2 (3) =================== 17-03-18 03:47:33.184 -07 000000610 INF: LanePump: Xmit /1?\r 17-03-18 03:47:33.214 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n 17-03-18 03:47:33.214 -07 000000610 INF: LanePump: Current Position of Pump is: 1110 17-03-18 03:47:33.344 -07 000000610 INF: LanePump: Xmit /1?\r 17-03-18 03:47:33.374 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n 17-03-18 03:47:33.374 -07 000000610 INF: LanePump: Current Position of Pump is: 1110 17-03-18 03:47:33.374 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution 17-03-18 03:47:33.504 -07 000000610 INF: LanePump: Xmit /1IR\r 17-03-18 03:47:33.534 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n 17-03-18 03:47:33.964 -07 000000610 INF: LanePump: Xmit /1Q\r 17-03-18 03:47:33.994 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n 17-03-18 03:47:33.994 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete 17-03-18 03:47:33.994 -07 000000610 INF: =================== Cycle #117 =================== 17-03-18 03:47:33.994 -07 000000461 INF: WaitCommand(10000) start 17-03-18 03:47:33.994 -07 000000581 INF: =================== Dispense to DispenseAndWait =================== 17-03-18 03:47:33.994 -07 000000581 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort =================== 17-03-18 03:47:34.164 -07 000000474 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 117, FrontChillerTemperature: 3.993549, 17-03-18 03:47:35.214 -07 000000581 INF: AsyncDelayTimer waited 1216ms 17-03-18 03:47:35.214 -07 000000581 INF: LanePump: Xmit /1?\r 17-03-18 03:47:35.244 -07 000000581 INF: LanePump: Recv /0`1110(0x03)\r\n 17-03-18 03:47:35.244 -07 000000581 INF: LanePump: Current Position of Pump is: 1110 17-03-18 03:47:35.374 -07 000000581 INF: LanePump: Xmit /1V1500OA0R\r 17-03-18 03:47:35.414 -07 000000581 INF: LanePump: Recv /0@(0x03)\r\n 17-03-18 03:47:36.604 -07 000000382 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-18 03:47:36.614 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 116. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1683, R2=1752, Total=3435. Warn if over 250 bubbles per interval. 17-03-18 03:47:36.944 -07 000000581 INF: LanePump: Xmit /1Q\r 17-03-18 03:47:36.974 -07 000000581 INF: LanePump: Recv /0@(0x03)\r\n 17-03-18 03:47:37.394 -07 000000581 INF: LanePump: Xmit /1Q\r 17-03-18 03:47:37.424 -07 000000581 INF: LanePump: Recv /0`(0x03)\r\n 17-03-18 03:47:37.424 -07 000000581 INF: LanePump: Waited 2009 ms for pump motion to complete 17-03-18 03:47:37.424 -07 000000581 INF: =================== Dispense to DispenseAndWait =================== 17-03-18 03:47:37.424 -07 000000581 INF: =================== =================== 17-03-18 03:47:39.524 -07 000000581 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 117, FrontChillerTemperature: 3.989471, 17-03-18 03:47:41.604 -07 000000581 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-18 03:47:41.604 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 116. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1683, R2=1752, Total=3435. Warn if over 250 bubbles per interval. 17-03-18 03:47:44.004 -07 000000461 INF: WaitCommand(10000) end 17-03-18 03:47:44.004 -07 000000610 INF: =================== Cycle #117, Imaging =================== 17-03-18 03:47:44.004 -07 000000610 INF: Imaging Cycle 117: ScanTilesCommand Cycle 117 time start. 17-03-18 03:47:44.004 -07 000000610 INF: ReagentValve: Go to position 24 (Plug) - Start of ScanTilesCommand 17-03-18 03:47:44.004 -07 000000610 INF: ReagentValve: Xmit S\r 17-03-18 03:47:44.034 -07 000000610 INF: ReagentValve: Recv 03\r 17-03-18 03:47:44.034 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 24. Moving 3 positions. 17-03-18 03:47:44.034 -07 000000610 INF: ReagentValve: Xmit -18\r 17-03-18 03:47:44.334 -07 000000610 INF: ReagentValve: Xmit B\r 17-03-18 03:47:44.354 -07 000000610 INF: ReagentValve: Recv 0278\r 17-03-18 03:47:44.354 -07 000000610 INF: ReagentValve: Move- from 3 to 24 took 632 steps, expected 612. Error = 20 steps (3.3%) 17-03-18 03:47:44.404 -07 000000610 INF: ReagentValve: Xmit S\r 17-03-18 03:47:44.424 -07 000000610 INF: ReagentValve: Recv 18\r 17-03-18 03:47:44.424 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-18 03:47:44.424 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-18 03:47:44.424 -07 000000581 INF: RedLED: Snapping RedLED at power = 1930.000 mW, snap mode for ~0 ms start. 17-03-18 03:47:44.424 -07 000000581 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-18 03:47:44.424 -07 000000581 INF: FPGA: Xmit EXLED1ON\n [RedLED] 17-03-18 03:47:44.434 -07 000000461 INF: FPGA: Recv EXLED1ON 17-03-18 03:47:44.434 -07 000000581 INF: FPGA: 'EXLED1ON' command took 0 ms to send, 0 ms to get response, and 2 ms overall 17-03-18 03:47:44.434 -07 000000581 INF: FPGA: Xmit EXLED1ADCR\n [RedLED] 17-03-18 03:47:44.434 -07 000000461 INF: FPGA: Recv EXLED1ADCR 23204 17-03-18 03:47:44.444 -07 000000581 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:47:44.444 -07 000000581 INF: RedLED: Using Red data: Photodiode ADC 23204 --> 7.5 mW (old method), or 205.6 mW (new method). Difference = 198.2 mW 17-03-18 03:47:44.444 -07 000000581 INF: FPGA: Xmit EXLED1OFF\n [RedLED] 17-03-18 03:47:44.444 -07 000000474 INF: FPGA: Recv EXLED1OFF 17-03-18 03:47:44.454 -07 000000581 INF: FPGA: 'EXLED1OFF' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:47:44.454 -07 000000581 INF: RedLED: LED was on for 19 ms 17-03-18 03:47:44.454 -07 000000581 INF: RedLED: Snapping RedLED at power = 1930.000 mW, snap mode for ~0 ms end. Duration was 23 ms. 17-03-18 03:47:44.454 -07 000000581 INF: GreenLED: Snapping GreenLED at power = 5964.000 mW, snap mode for ~0 ms start. 17-03-18 03:47:44.454 -07 000000581 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-18 03:47:44.454 -07 000000581 INF: FPGA: Xmit EXLED2ON\n [GreenLED] 17-03-18 03:47:44.454 -07 000000474 INF: FPGA: Recv EXLED2ON 17-03-18 03:47:44.464 -07 000000581 INF: FPGA: 'EXLED2ON' command took 0 ms to send, 0 ms to get response, and 7 ms overall 17-03-18 03:47:44.464 -07 000000581 INF: FPGA: Xmit EXLED1ADCR\n [GreenLED] 17-03-18 03:47:44.464 -07 000000424 INF: FPGA: Recv EXLED1ADCR 2097 17-03-18 03:47:44.474 -07 000000581 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:47:44.474 -07 000000581 INF: GreenLED: Using Green data: Photodiode ADC 2097 --> 0.9 mW (old method), or 182.2 mW (new method). Difference = 181.3 mW 17-03-18 03:47:44.474 -07 000000581 INF: FPGA: Xmit EXLED2OFF\n [GreenLED] 17-03-18 03:47:44.474 -07 000000474 INF: FPGA: Recv EXLED2OFF 17-03-18 03:47:44.484 -07 000000581 INF: FPGA: 'EXLED2OFF' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:47:44.484 -07 000000581 INF: GreenLED: LED was on for 19 ms 17-03-18 03:47:44.484 -07 000000581 INF: GreenLED: Snapping GreenLED at power = 5964.000 mW, snap mode for ~0 ms end. Duration was 28 ms. 17-03-18 03:47:44.484 -07 000000610 INF: FPGA: Xmit EMCUR 80\n [Compensator] 17-03-18 03:47:44.484 -07 000000581 INF: FPGA: Recv EMCUR 17-03-18 03:47:44.494 -07 000000610 INF: FPGA: 'EMCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall 17-03-18 03:47:44.494 -07 000000610 INF: FPGA: Xmit EMOUT 20 70\n [Compensator] 17-03-18 03:47:44.884 -07 000000438 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 117, FrontChillerTemperature: 3.999021, 17-03-18 03:47:44.994 -07 000000606 INF: FPGA: Recv EMOUT 17-03-18 03:47:44.994 -07 000000610 INF: FPGA: 'EMOUT 20 70' command took 0 ms to send, 495 ms to get response, and 504 ms overall 17-03-18 03:47:44.994 -07 000000610 INF: FPGA: Xmit EMCUR 75\n [Compensator] 17-03-18 03:47:44.994 -07 000000606 INF: FPGA: Recv EMCUR 17-03-18 03:47:45.004 -07 000000610 INF: FPGA: 'EMCUR 75' command took 0 ms to send, 0 ms to get response, and 4 ms overall 17-03-18 03:47:45.004 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880 17-03-18 03:47:45.004 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 1 at Y-position 75.38427734375, Z-Position -0.126753988365038. ------ 17-03-18 03:47:45.004 -07 000000581 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-18 03:47:45.004 -07 000000424 INF: Y Motor: MoveYZ optimized starting. Moving Y to 59.9126 mm, moving Z to -0.17871 mm 17-03-18 03:47:45.004 -07 000000424 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move 17-03-18 03:47:45.004 -07 000000461 INF: FPGA: Recv FOCMRRCUR 17-03-18 03:47:45.004 -07 000000606 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True) 17-03-18 03:47:45.004 -07 000000606 INF: Y Motor: Moving to 59.9126 mm, started at 75.3843 mm, delta = -15.4717 mm 17-03-18 03:47:45.004 -07 000000438 INF: Z Motor: Entering MoveAbsStepped (DAC = 39039, sync = True, waitForSettling = False) 17-03-18 03:47:45.004 -07 000000438 INF: Z Motor: Moving to -0.178709 mm, started at -0.126754 mm, distance = -51.96 um 17-03-18 03:47:45.014 -07 000000438 INF: FPGA: Xmit ZDACW 39039\n [Z Motor] 17-03-18 03:47:45.014 -07 000000581 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall 17-03-18 03:47:45.014 -07 000000569 INF: FPGA: Recv ZDACW 17-03-18 03:47:45.024 -07 000000438 INF: FPGA: 'ZDACW 39039' command took 0 ms to send, 0 ms to get response, and 7 ms overall 17-03-18 03:47:45.024 -07 000000581 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror] 17-03-18 03:47:45.034 -07 000000606 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 03:47:45.034 -07 000000626 INF: FPGA: Recv YRDPOS 154387 17-03-18 03:47:45.044 -07 000000438 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-18 03:47:45.044 -07 000000606 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 30 ms overall 17-03-18 03:47:45.044 -07 000000606 INF: Y Motor: Encoder = 154387 = motor step 120614.8 = 75.3843 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 03:47:45.044 -07 000000606 INF: Y Motor: Last commanded position = 75.3806 mm (120608.9 steps), delta from last commanded position = -15.4680 mm (-24748.8 steps). UsingTableMove = False 17-03-18 03:47:45.044 -07 000000606 INF: Y Motor: Moving to 122701 encoder counts 17-03-18 03:47:45.044 -07 000000382 INF: FPGA: Recv ZDACR 39039 17-03-18 03:47:45.054 -07 000000438 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall 17-03-18 03:47:45.054 -07 000000438 INF: Z Motor: MoveAbsStepped took 40 ms (did NOT wait for settling yet)) 17-03-18 03:47:45.054 -07 000000606 INF: FPGA: Xmit YMVTO 122701\n [Y Motor] 17-03-18 03:47:45.224 -07 000000461 INF: FPGA: Recv FOCMRRFOC 17-03-18 03:47:45.224 -07 000000581 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 210 ms overall 17-03-18 03:47:46.604 -07 000000569 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-18 03:47:46.604 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 116. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1683, R2=1752, Total=3435. Warn if over 250 bubbles per interval. 17-03-18 03:47:46.734 -07 000000626 INF: FPGA: Recv YMVTO 122703 24783 17-03-18 03:47:46.734 -07 000000606 INF: FPGA: 'YMVTO 122701' command took 0 ms to send, 1678 ms to get response, and 1697 ms overall 17-03-18 03:47:46.734 -07 000000606 INF: Y Motor: Position error before settling = 2 encoder counts (0.001 mm) 17-03-18 03:47:46.734 -07 000000606 INF: Y Motor: To move from 75.384 to 59.913 (-15.472 mm) should take 24755 steps, but required 24783 steps (15.489 mm). Slippage = 0.018 mm (0.00%). 17-03-18 03:47:46.734 -07 000000606 INF: Y Motor: FPGA move command 'YMVTO 122701' took 1697 ms, distance = 15.472 mm, average velocity = 9.117 mm/sec 17-03-18 03:47:49.584 -07 000000606 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 03:47:49.584 -07 000000438 INF: FPGA: Recv YRDPOS 122696 17-03-18 03:47:49.594 -07 000000606 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:47:49.594 -07 000000606 INF: Y Motor: Encoder = 122696 = motor step 95856.3 = 59.9102 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 03:47:49.624 -07 000000606 INF: Y Motor: After move to 59.912609, error = -0.002453, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm 17-03-18 03:47:49.624 -07 000000606 INF: Y Motor: Position error after settling = -5 encoder counts (-0.002 mm), Delta during settling = -7 counts (-0.003 mm) 17-03-18 03:47:49.624 -07 000000606 INF: Y Motor: Moved to 59.9102 after 4611 ms 17-03-18 03:47:49.624 -07 000000424 INF: Z Motor: EndOfMoveAbsStepped: target = -0.178709 mm (DAC = 39039) 17-03-18 03:47:49.624 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:47:49.624 -07 000000626 INF: FPGA: Recv ZSGSRD 37115 17-03-18 03:47:49.634 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall 17-03-18 03:47:49.634 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:47:49.634 -07 000000626 INF: FPGA: Recv ZSGSRD 37108 17-03-18 03:47:49.644 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:47:49.644 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:47:49.644 -07 000000438 INF: FPGA: Recv ZSGSRD 37109 17-03-18 03:47:49.654 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:47:49.654 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:47:49.654 -07 000000581 INF: FPGA: Recv ZSGSRD 37103 17-03-18 03:47:49.664 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:47:49.664 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:47:49.664 -07 000000590 INF: FPGA: Recv ZSGSRD 37109 17-03-18 03:47:49.674 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:47:49.674 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:47:49.674 -07 000000581 INF: FPGA: Recv ZSGSRD 37109 17-03-18 03:47:49.684 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:47:49.684 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:47:49.684 -07 000000626 INF: FPGA: Recv ZSGSRD 37113 17-03-18 03:47:49.694 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:47:49.694 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:47:49.694 -07 000000606 INF: FPGA: Recv ZSGSRD 37109 17-03-18 03:47:49.704 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:47:49.704 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:47:49.704 -07 000000382 INF: FPGA: Recv ZSGSRD 37106 17-03-18 03:47:49.714 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:47:49.714 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:47:49.714 -07 000000581 INF: FPGA: Recv ZSGSRD 37107 17-03-18 03:47:49.724 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:47:49.724 -07 000000424 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-18 03:47:49.724 -07 000000382 INF: FPGA: Recv ZPIEZORD 33323 17-03-18 03:47:49.734 -07 000000424 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:47:49.734 -07 000000424 INF: Z Motor: Piezo is near 51.2 V (nominally 0 to 100 V), expect near 59.6 V, since DAC is at 5.957 V. Piezo Error = -8.4 V. 17-03-18 03:47:49.734 -07 000000424 INF: Z Motor: ReadAdcAverage: Commanded Z = -178.7 um, Read 10 ADC samples: Avg = 37109 (-177.8 uncal um), Error = 0.9 uncal um, Median = 37109 (-177.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 37103 (-177.8 uncal um), Max = 37115 (-177.9 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um) 17-03-18 03:47:49.734 -07 000000424 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37109, posNoise = 6, negNoise = 6 17-03-18 03:47:49.734 -07 000000424 INF: Z Motor: After move to -0.178709, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-18 03:47:49.734 -07 000000424 INF: Z Motor: Settle wait time = 4613 ms, measure time = 105 ms (allowed 150 ms), total time = 4718 ms 17-03-18 03:47:49.734 -07 000000424 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms 17-03-18 03:47:49.784 -07 000000424 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 4774 ms 17-03-18 03:47:49.784 -07 000000424 INF: Y Motor: Restored settling times back to 3000 or 1100 ms 17-03-18 03:47:49.784 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-18 03:47:49.784 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-18 03:47:49.784 -07 000000438 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-18 03:47:49.784 -07 000000461 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-18 03:47:49.784 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger start. 17-03-18 03:47:49.784 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-18 03:47:49.784 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-18 03:47:49.784 -07 000000626 INF: Camera: sBCa_SetPowerMode(785074288, 1) start. 17-03-18 03:47:49.814 -07 000000626 INF: Camera: sBCa_SetPowerMode(785074288, 1) end. Duration was 24 ms. 17-03-18 03:47:49.814 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start. 17-03-18 03:47:49.814 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms. 17-03-18 03:47:49.814 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start. 17-03-18 03:47:49.834 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms. 17-03-18 03:47:49.834 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 42 ms. 17-03-18 03:47:49.834 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera] 17-03-18 03:47:49.874 -07 000000581 INF: FPGA: Recv @CAMSNAP turning led on 40 17-03-18 03:47:50.174 -07 000000590 INF: FPGA: Recv @CAMSNAP img rdy 340 17-03-18 03:47:50.174 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340 17-03-18 03:47:50.174 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start. 17-03-18 03:47:50.184 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2166103952, 0x0, 559484976) start. 17-03-18 03:47:50.214 -07 000000590 INF: FPGA: Recv @CAMSNAP 380 17-03-18 03:47:50.214 -07 000000581 INF: FPGA: Recv CAMSNAP 17-03-18 03:47:50.214 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 378 ms to get response, and 384 ms overall 17-03-18 03:47:50.244 -07 000000590 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 117, FrontChillerTemperature: 3.979922, 17-03-18 03:47:50.304 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2166103952, 0x0, 559484976) end. Duration was 126 ms. 17-03-18 03:47:50.304 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-18 03:47:50.304 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms. 17-03-18 03:47:50.304 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms. 17-03-18 03:47:50.414 -07 000000438 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-18 03:47:50.414 -07 000000590 INF: Image SNR check: start 17-03-18 03:47:50.414 -07 000000581 INF: FPGA: Recv FOCMRRCUR 17-03-18 03:47:50.424 -07 000000438 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall 17-03-18 03:47:50.424 -07 000000438 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror] 17-03-18 03:47:50.424 -07 000000590 INF: Image SNR check: pass [peak (Max-Min)=144.62] 17-03-18 03:47:50.424 -07 000000590 INF: Autofocus start 17-03-18 03:47:50.424 -07 000000590 INF: MeasureProfile start 17-03-18 03:47:50.434 -07 000000590 INF: MeasureProfile done 17-03-18 03:47:50.434 -07 000000590 INF: X=0 Z correction [um]=-0.0713522 17-03-18 03:47:50.434 -07 000000590 INF: Autofocus finished 17-03-18 03:47:50.624 -07 000000590 INF: FPGA: Recv FOCMRRIMG 17-03-18 03:47:50.624 -07 000000438 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall 17-03-18 03:47:50.624 -07 000000610 INF: ------------ Scan Snapping tile 1 at Y-position 59.91015625, Z-position -0.178719440379742. ---------- 17-03-18 03:47:50.624 -07 000000610 INF: Cycle 117 Tile 1 Exposure Settings A 411 G 198 T 198 C 411 17-03-18 03:47:50.634 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37536, sync = True, waitForSettling = True) 17-03-18 03:47:50.634 -07 000000610 INF: Z Motor: Moving to -0.171829 mm, started at -0.178719 mm, distance = 6.89 um 17-03-18 03:47:50.634 -07 000000610 INF: FPGA: Xmit ZDACW 37536\n [Z Motor] 17-03-18 03:47:50.634 -07 000000581 INF: FPGA: Recv ZDACW 17-03-18 03:47:50.644 -07 000000610 INF: FPGA: 'ZDACW 37536' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:47:50.644 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-18 03:47:50.644 -07 000000581 INF: FPGA: Recv ZDACR 37536 17-03-18 03:47:50.654 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:47:50.654 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-18 03:47:50.804 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:47:50.804 -07 000000590 INF: FPGA: Recv ZSGSRD 36040 17-03-18 03:47:50.814 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-18 03:47:50.814 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:47:50.814 -07 000000438 INF: FPGA: Recv ZSGSRD 36041 17-03-18 03:47:50.824 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:47:50.824 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:47:50.824 -07 000000581 INF: FPGA: Recv ZSGSRD 36041 17-03-18 03:47:50.834 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:47:50.834 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:47:50.834 -07 000000438 INF: FPGA: Recv ZSGSRD 36036 17-03-18 03:47:50.844 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:47:50.844 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:47:50.844 -07 000000581 INF: FPGA: Recv ZSGSRD 36039 17-03-18 03:47:50.854 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:47:50.854 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:47:50.854 -07 000000581 INF: FPGA: Recv ZSGSRD 36042 17-03-18 03:47:50.864 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:47:50.864 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:47:50.864 -07 000000581 INF: FPGA: Recv ZSGSRD 36037 17-03-18 03:47:50.874 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:47:50.874 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:47:50.874 -07 000000438 INF: FPGA: Recv ZSGSRD 36037 17-03-18 03:47:50.884 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:47:50.884 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:47:50.884 -07 000000581 INF: FPGA: Recv ZSGSRD 36037 17-03-18 03:47:50.894 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:47:50.894 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:47:50.894 -07 000000438 INF: FPGA: Recv ZSGSRD 36035 17-03-18 03:47:50.904 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall 17-03-18 03:47:50.904 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-18 03:47:50.904 -07 000000424 INF: FPGA: Recv ZPIEZORD 31913 17-03-18 03:47:50.914 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:47:50.914 -07 000000610 INF: Z Motor: Piezo is near 48.2 V (nominally 0 to 100 V), expect near 57.3 V, since DAC is at 5.728 V. Piezo Error = -9.1 V. 17-03-18 03:47:50.914 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.8 um, Read 10 ADC samples: Avg = 36038 (-171.0 uncal um), Error = 0.9 uncal um, Median = 36038 (-171.0 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 36035 (-170.9 uncal um), Max = 36042 (-171.0 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um) 17-03-18 03:47:50.914 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36038, posNoise = 4, negNoise = 3 17-03-18 03:47:50.914 -07 000000610 INF: Z Motor: After move to -0.171829, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-18 03:47:50.914 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms) 17-03-18 03:47:50.914 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-18 03:47:50.914 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-18 03:47:50.914 -07 000000590 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-18 03:47:50.914 -07 000000438 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-18 03:47:50.914 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start. 17-03-18 03:47:50.914 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-18 03:47:50.914 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start. 17-03-18 03:47:50.914 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) start. 17-03-18 03:47:50.914 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-18 03:47:50.914 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start. 17-03-18 03:47:50.914 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms. 17-03-18 03:47:50.914 -07 000000626 INF: Camera: sBCa_SetPowerMode(785074704, 1) start. 17-03-18 03:47:50.914 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms. 17-03-18 03:47:50.924 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start. 17-03-18 03:47:50.934 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms. 17-03-18 03:47:50.934 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms. 17-03-18 03:47:50.934 -07 000000626 INF: Camera: sBCa_SetPowerMode(785074704, 1) end. Duration was 21 ms. 17-03-18 03:47:50.934 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start. 17-03-18 03:47:50.944 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms. 17-03-18 03:47:50.944 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start. 17-03-18 03:47:50.954 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 11 ms. 17-03-18 03:47:50.954 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 38 ms. 17-03-18 03:47:50.954 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 411 411 198 198 37713 150\n [Camera] 17-03-18 03:47:51.154 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP turning red on 193 17-03-18 03:47:51.564 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 603 17-03-18 03:47:51.564 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 603 17-03-18 03:47:51.574 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-18 03:47:51.574 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 603 17-03-18 03:47:51.574 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 603 17-03-18 03:47:51.574 -07 000000581 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-18 03:47:51.574 -07 000000581 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-18 03:47:51.574 -07 000000581 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) start. 17-03-18 03:47:51.574 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-18 03:47:51.574 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 2199785120, 0x0, 391868352) start. 17-03-18 03:47:51.604 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-18 03:47:51.604 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 116. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1683, R2=1752, Total=3435. Warn if over 250 bubbles per interval. 17-03-18 03:47:51.764 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37713 796 17-03-18 03:47:51.914 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning grn on 946 17-03-18 03:47:51.974 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 2199785120, 0x0, 391868352) end. Duration was 397 ms. 17-03-18 03:47:51.974 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms. 17-03-18 03:47:51.974 -07 000000590 INF: Camera: CopyActivePixFullImage start. 17-03-18 03:47:51.974 -07 000000581 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) end. Duration was 403 ms. 17-03-18 03:47:51.974 -07 000000581 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 403 ms. 17-03-18 03:47:51.974 -07 000000581 INF: Camera: CopyActivePixFullImage start. 17-03-18 03:47:51.984 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms. 17-03-18 03:47:51.984 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms. 17-03-18 03:47:51.984 -07 000000581 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms. 17-03-18 03:47:51.994 -07 000000581 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 417 ms. 17-03-18 03:47:52.114 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1144 17-03-18 03:47:52.114 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1144 17-03-18 03:47:52.114 -07 000000581 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-18 03:47:52.114 -07 000000581 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-18 03:47:52.114 -07 000000581 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) start. 17-03-18 03:47:52.114 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1144 17-03-18 03:47:52.114 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1144 17-03-18 03:47:52.114 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-18 03:47:52.234 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-18 03:47:52.234 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) start. 17-03-18 03:47:52.304 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP 1337 17-03-18 03:47:52.304 -07 000000424 INF: FPGA: Recv CAMDBLSNAP 17-03-18 03:47:52.304 -07 000000610 INF: FPGA: 'CAMDBLSNAP 411 411 198 198 37713 150' command took 2 ms to send, 1331 ms to get response, and 1343 ms overall 17-03-18 03:47:52.304 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880 17-03-18 03:47:52.304 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 2 at Y-position 59.91015625, Z-Position -0.171839109175916. ------ 17-03-18 03:47:52.304 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-18 03:47:52.304 -07 000000438 INF: Y Motor: MoveYZ optimized starting. Moving Y to 60.7426 mm, moving Z to -0.17815 mm 17-03-18 03:47:52.304 -07 000000438 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move 17-03-18 03:47:52.314 -07 000000424 INF: FPGA: Recv FOCMRRCUR 17-03-18 03:47:52.314 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall 17-03-18 03:47:52.314 -07 000000590 INF: Z Motor: Entering MoveAbsStepped (DAC = 38917, sync = True, waitForSettling = False) 17-03-18 03:47:52.314 -07 000000590 INF: Z Motor: Moving to -0.178151 mm, started at -0.171839 mm, distance = -6.31 um 17-03-18 03:47:52.314 -07 000000474 INF: Y Motor: Entering MoveAbsStepped (target = 97188 steps, sync = True, waitForSettling = True) 17-03-18 03:47:52.314 -07 000000474 INF: Y Motor: Moving to 60.7426 mm, started at 59.9102 mm, delta = 0.8325 mm 17-03-18 03:47:52.324 -07 000000626 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror] 17-03-18 03:47:52.344 -07 000000590 INF: FPGA: Xmit ZDACW 38917\n [Z Motor] 17-03-18 03:47:52.344 -07 000000424 INF: FPGA: Recv ZDACW 17-03-18 03:47:52.354 -07 000000474 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 03:47:52.354 -07 000000590 INF: FPGA: 'ZDACW 38917' command took 0 ms to send, 0 ms to get response, and 37 ms overall 17-03-18 03:47:52.354 -07 000000461 INF: FPGA: Recv YRDPOS 122696 17-03-18 03:47:52.364 -07 000000474 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 47 ms overall 17-03-18 03:47:52.364 -07 000000474 INF: Y Motor: Encoder = 122696 = motor step 95856.3 = 59.9102 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 03:47:52.364 -07 000000474 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True 17-03-18 03:47:52.364 -07 000000474 INF: Y Motor: Moving 1332 steps2 17-03-18 03:47:52.364 -07 000000590 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-18 03:47:52.364 -07 000000382 INF: FPGA: Recv ZDACR 38917 17-03-18 03:47:52.374 -07 000000590 INF: FPGA: 'ZDACR' command took 3 ms to send, 0 ms to get response, and 19 ms overall 17-03-18 03:47:52.374 -07 000000590 INF: Z Motor: MoveAbsStepped took 57 ms (did NOT wait for settling yet)) 17-03-18 03:47:52.374 -07 000000474 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor] 17-03-18 03:47:52.504 -07 000000581 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) end. Duration was 394 ms. 17-03-18 03:47:52.504 -07 000000581 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms. 17-03-18 03:47:52.504 -07 000000581 INF: Camera: CopyActivePixFullImage start. 17-03-18 03:47:52.514 -07 000000581 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms. 17-03-18 03:47:52.514 -07 000000581 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 400 ms. 17-03-18 03:47:52.534 -07 000000461 INF: FPGA: Recv FOCMRRFOC 17-03-18 03:47:52.534 -07 000000626 INF: FPGA: 'FOCMRRFOC' command took 10 ms to send, 192 ms to get response, and 222 ms overall 17-03-18 03:47:52.624 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) end. Duration was 394 ms. 17-03-18 03:47:52.624 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms. 17-03-18 03:47:52.624 -07 000000569 INF: Camera: CopyActivePixFullImage start. 17-03-18 03:47:52.634 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-18 03:47:52.634 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 525 ms. 17-03-18 03:47:52.744 -07 000000590 INF: FPGA: Recv YMVTILE 17-03-18 03:47:52.744 -07 000000474 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 385 ms overall 17-03-18 03:47:52.784 -07 000000474 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 03:47:52.794 -07 000000501 INF: FPGA: Recv YRDPOS 124380 17-03-18 03:47:52.794 -07 000000474 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall 17-03-18 03:47:52.794 -07 000000474 INF: Y Motor: Encoder = 124380 = motor step 97171.9 = 60.7324 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 03:47:52.794 -07 000000474 INF: Y Motor: Position error before settling (table move) = -21 encoder counts (-0.010 mm) 17-03-18 03:47:52.794 -07 000000474 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.832 mm, average velocity = 2.145 mm/sec 17-03-18 03:47:53.744 -07 000000474 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 03:47:53.744 -07 000000501 INF: FPGA: Recv YRDPOS 124380 17-03-18 03:47:53.754 -07 000000474 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-18 03:47:53.754 -07 000000474 INF: Y Motor: Encoder = 124380 = motor step 97171.9 = 60.7324 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 03:47:53.784 -07 000000474 INF: Y Motor: After move to 60.742607, error = -0.010185, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm 17-03-18 03:47:53.784 -07 000000474 INF: Y Motor: Position error after settling (table move) = -21 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm) 17-03-18 03:47:53.784 -07 000000474 INF: Y Motor: Moved to 60.7324 after 1468 ms (table move) 17-03-18 03:47:53.784 -07 000000438 INF: Z Motor: EndOfMoveAbsStepped: target = -0.178151 mm (DAC = 38917) 17-03-18 03:47:53.784 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:47:53.784 -07 000000424 INF: FPGA: Recv ZSGSRD 37022 17-03-18 03:47:53.794 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall 17-03-18 03:47:53.794 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:47:53.794 -07 000000424 INF: FPGA: Recv ZSGSRD 37017 17-03-18 03:47:53.804 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:47:53.804 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:47:53.804 -07 000000424 INF: FPGA: Recv ZSGSRD 37022 17-03-18 03:47:53.814 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:47:53.814 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:47:53.814 -07 000000424 INF: FPGA: Recv ZSGSRD 37026 17-03-18 03:47:53.824 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:47:53.824 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:47:53.824 -07 000000424 INF: FPGA: Recv ZSGSRD 37022 17-03-18 03:47:53.834 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:47:53.834 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:47:53.834 -07 000000424 INF: FPGA: Recv ZSGSRD 37022 17-03-18 03:47:53.844 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:47:53.844 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:47:53.844 -07 000000461 INF: FPGA: Recv ZSGSRD 37019 17-03-18 03:47:53.854 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:47:53.854 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:47:53.854 -07 000000424 INF: FPGA: Recv ZSGSRD 37020 17-03-18 03:47:53.864 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:47:53.864 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:47:53.864 -07 000000461 INF: FPGA: Recv ZSGSRD 37017 17-03-18 03:47:53.874 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:47:53.874 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:47:53.874 -07 000000461 INF: FPGA: Recv ZSGSRD 37020 17-03-18 03:47:53.884 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:47:53.884 -07 000000438 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-18 03:47:53.884 -07 000000461 INF: FPGA: Recv ZPIEZORD 33233 17-03-18 03:47:53.894 -07 000000438 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:47:53.894 -07 000000438 INF: Z Motor: Piezo is near 51.0 V (nominally 0 to 100 V), expect near 59.4 V, since DAC is at 5.938 V. Piezo Error = -8.4 V. 17-03-18 03:47:53.894 -07 000000438 INF: Z Motor: ReadAdcAverage: Commanded Z = -178.2 um, Read 10 ADC samples: Avg = 37021 (-177.3 uncal um), Error = 0.9 uncal um, Median = 37021 (-177.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 37017 (-177.2 uncal um), Max = 37026 (-177.3 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um) 17-03-18 03:47:53.894 -07 000000438 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37021, posNoise = 5, negNoise = 4 17-03-18 03:47:53.894 -07 000000438 INF: Z Motor: After move to -0.178151, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-18 03:47:53.894 -07 000000438 INF: Z Motor: Settle wait time = 1473 ms, measure time = 105 ms (allowed 150 ms), total time = 1578 ms 17-03-18 03:47:53.894 -07 000000438 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms 17-03-18 03:47:53.944 -07 000000438 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1631 ms 17-03-18 03:47:53.944 -07 000000438 INF: Y Motor: Restored settling times back to 3000 or 1100 ms 17-03-18 03:47:53.944 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-18 03:47:53.944 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-18 03:47:53.944 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-18 03:47:53.944 -07 000000461 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-18 03:47:53.944 -07 000000438 INF: Disarm and arm camera sensor 0: ROITrigger start. 17-03-18 03:47:53.944 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-18 03:47:53.944 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-18 03:47:53.944 -07 000000438 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start. 17-03-18 03:47:53.954 -07 000000438 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms. 17-03-18 03:47:53.954 -07 000000438 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start. 17-03-18 03:47:53.964 -07 000000438 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms. 17-03-18 03:47:53.964 -07 000000438 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms. 17-03-18 03:47:53.964 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera] 17-03-18 03:47:54.014 -07 000000424 INF: FPGA: Recv @CAMSNAP turning led on 40 17-03-18 03:47:54.314 -07 000000424 INF: FPGA: Recv @CAMSNAP img rdy 340 17-03-18 03:47:54.314 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340 17-03-18 03:47:54.314 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start. 17-03-18 03:47:54.314 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 639799168, 0x0, 559484976) start. 17-03-18 03:47:54.354 -07 000000424 INF: FPGA: Recv @CAMSNAP 380 17-03-18 03:47:54.354 -07 000000461 INF: FPGA: Recv CAMSNAP 17-03-18 03:47:54.354 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 382 ms to get response, and 385 ms overall 17-03-18 03:47:54.444 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 639799168, 0x0, 559484976) end. Duration was 126 ms. 17-03-18 03:47:54.444 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-18 03:47:54.444 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms. 17-03-18 03:47:54.444 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms. 17-03-18 03:47:54.454 -07 000000461 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-18 03:47:54.454 -07 000000438 INF: Autofocus start 17-03-18 03:47:54.454 -07 000000438 INF: MeasureProfile start 17-03-18 03:47:54.454 -07 000000424 INF: FPGA: Recv FOCMRRCUR 17-03-18 03:47:54.464 -07 000000461 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall 17-03-18 03:47:54.464 -07 000000461 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror] 17-03-18 03:47:54.464 -07 000000438 INF: MeasureProfile done 17-03-18 03:47:54.464 -07 000000438 INF: X=0 Z correction [um]=-0.0713522 17-03-18 03:47:54.464 -07 000000438 INF: Autofocus finished 17-03-18 03:47:54.664 -07 000000438 INF: FPGA: Recv FOCMRRIMG 17-03-18 03:47:54.664 -07 000000461 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall 17-03-18 03:47:54.664 -07 000000610 INF: ------------ Scan Snapping tile 2 at Y-position 60.732421875, Z-position -0.178154109711267. ---------- 17-03-18 03:47:54.664 -07 000000610 INF: Cycle 117 Tile 2 Exposure Settings A 411 G 198 T 198 C 411 17-03-18 03:47:54.674 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37414, sync = True, waitForSettling = True) 17-03-18 03:47:54.674 -07 000000610 INF: Z Motor: Moving to -0.171270 mm, started at -0.178154 mm, distance = 6.88 um 17-03-18 03:47:54.674 -07 000000610 INF: FPGA: Xmit ZDACW 37414\n [Z Motor] 17-03-18 03:47:54.674 -07 000000424 INF: FPGA: Recv ZDACW 17-03-18 03:47:54.684 -07 000000610 INF: FPGA: 'ZDACW 37414' command took 0 ms to send, 0 ms to get response, and 7 ms overall 17-03-18 03:47:54.684 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-18 03:47:54.684 -07 000000461 INF: FPGA: Recv ZDACR 37414 17-03-18 03:47:54.694 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:47:54.694 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-18 03:47:54.844 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:47:54.844 -07 000000461 INF: FPGA: Recv ZSGSRD 35955 17-03-18 03:47:54.854 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-18 03:47:54.854 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:47:54.854 -07 000000461 INF: FPGA: Recv ZSGSRD 35962 17-03-18 03:47:54.864 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:47:54.864 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:47:54.864 -07 000000424 INF: FPGA: Recv ZSGSRD 35949 17-03-18 03:47:54.874 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:47:54.874 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:47:54.874 -07 000000424 INF: FPGA: Recv ZSGSRD 35951 17-03-18 03:47:54.884 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:47:54.884 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:47:54.884 -07 000000461 INF: FPGA: Recv ZSGSRD 35945 17-03-18 03:47:54.894 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:47:54.894 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:47:54.894 -07 000000424 INF: FPGA: Recv ZSGSRD 35954 17-03-18 03:47:54.904 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:47:54.904 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:47:54.904 -07 000000474 INF: FPGA: Recv ZSGSRD 35949 17-03-18 03:47:54.914 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:47:54.914 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:47:54.914 -07 000000474 INF: FPGA: Recv ZSGSRD 35947 17-03-18 03:47:54.924 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:47:54.924 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:47:54.924 -07 000000438 INF: FPGA: Recv ZSGSRD 35953 17-03-18 03:47:54.934 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:47:54.934 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:47:54.934 -07 000000438 INF: FPGA: Recv ZSGSRD 35951 17-03-18 03:47:54.944 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:47:54.944 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-18 03:47:54.944 -07 000000474 INF: FPGA: Recv ZPIEZORD 31773 17-03-18 03:47:54.954 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:47:54.954 -07 000000610 INF: Z Motor: Piezo is near 47.9 V (nominally 0 to 100 V), expect near 57.1 V, since DAC is at 5.709 V. Piezo Error = -9.2 V. 17-03-18 03:47:54.954 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.3 um, Read 10 ADC samples: Avg = 35952 (-170.4 uncal um), Error = 0.9 uncal um, Median = 35951 (-170.4 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 35945 (-170.4 uncal um), Max = 35962 (-170.5 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um) 17-03-18 03:47:54.954 -07 000000610 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35952, posNoise = 10, negNoise = 7 17-03-18 03:47:54.954 -07 000000610 INF: Z Motor: After move to -0.171270, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-18 03:47:54.954 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms) 17-03-18 03:47:54.954 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-18 03:47:54.954 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-18 03:47:54.954 -07 000000474 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-18 03:47:54.954 -07 000000461 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start. 17-03-18 03:47:54.954 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074704) start. 17-03-18 03:47:54.954 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start. 17-03-18 03:47:54.954 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-18 03:47:54.954 -07 000000438 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-18 03:47:54.954 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms. 17-03-18 03:47:54.954 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start. 17-03-18 03:47:54.954 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms. 17-03-18 03:47:54.954 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start. 17-03-18 03:47:54.964 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms. 17-03-18 03:47:54.964 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start. 17-03-18 03:47:54.964 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms. 17-03-18 03:47:54.964 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start. 17-03-18 03:47:54.974 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 14 ms. 17-03-18 03:47:54.974 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 19 ms. 17-03-18 03:47:54.974 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms. 17-03-18 03:47:54.974 -07 000000461 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 19 ms. 17-03-18 03:47:54.974 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 411 411 198 198 37590 150\n [Camera] 17-03-18 03:47:55.174 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP turning red on 192 17-03-18 03:47:55.584 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 603 17-03-18 03:47:55.584 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 603 17-03-18 03:47:55.594 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-18 03:47:55.594 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 603 17-03-18 03:47:55.594 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 603 17-03-18 03:47:55.594 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-18 03:47:55.594 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-18 03:47:55.594 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 2166103952, 0x0, 391868352) start. 17-03-18 03:47:55.594 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-18 03:47:55.594 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 2201526216, 0x0, 418435064) start. 17-03-18 03:47:55.604 -07 000000474 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 117, FrontChillerTemperature: 4.003063, 17-03-18 03:47:55.784 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37590 796 17-03-18 03:47:55.934 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning grn on 946 17-03-18 03:47:55.984 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 2201526216, 0x0, 418435064) end. Duration was 381 ms. 17-03-18 03:47:55.984 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms. 17-03-18 03:47:55.984 -07 000000606 INF: Camera: CopyActivePixFullImage start. 17-03-18 03:47:55.984 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-18 03:47:55.984 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 2166103952, 0x0, 391868352) end. Duration was 389 ms. 17-03-18 03:47:55.984 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 390 ms. 17-03-18 03:47:55.984 -07 000000590 INF: Camera: CopyActivePixFullImage start. 17-03-18 03:47:55.984 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-18 03:47:55.984 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 398 ms. 17-03-18 03:47:55.994 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 397 ms. 17-03-18 03:47:56.124 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1144 17-03-18 03:47:56.134 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1144 17-03-18 03:47:56.134 -07 000000581 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-18 03:47:56.134 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1144 17-03-18 03:47:56.134 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1144 17-03-18 03:47:56.134 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-18 03:47:56.244 -07 000000581 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-18 03:47:56.244 -07 000000581 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start. 17-03-18 03:47:56.254 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-18 03:47:56.254 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) start. 17-03-18 03:47:56.324 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP 1336 17-03-18 03:47:56.324 -07 000000590 INF: FPGA: Recv CAMDBLSNAP 17-03-18 03:47:56.324 -07 000000610 INF: FPGA: 'CAMDBLSNAP 411 411 198 198 37590 150' command took 2 ms to send, 1331 ms to get response, and 1344 ms overall 17-03-18 03:47:56.324 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880 17-03-18 03:47:56.324 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 3 at Y-position 60.732421875, Z-Position -0.171286626931725. ------ 17-03-18 03:47:56.324 -07 000000474 INF: Y Motor: MoveYZ optimized starting. Moving Y to 61.5726 mm, moving Z to -0.17793 mm 17-03-18 03:47:56.324 -07 000000474 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move 17-03-18 03:47:56.324 -07 000000438 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-18 03:47:56.334 -07 000000569 INF: FPGA: Recv FOCMRRCUR 17-03-18 03:47:56.334 -07 000000438 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall 17-03-18 03:47:56.334 -07 000000590 INF: Z Motor: Entering MoveAbsStepped (DAC = 38869, sync = True, waitForSettling = False) 17-03-18 03:47:56.334 -07 000000590 INF: Z Motor: Moving to -0.177931 mm, started at -0.171287 mm, distance = -6.64 um 17-03-18 03:47:56.334 -07 000000590 INF: FPGA: Xmit ZDACW 38869\n [Z Motor] 17-03-18 03:47:56.334 -07 000000606 INF: Y Motor: Entering MoveAbsStepped (target = 98516 steps, sync = True, waitForSettling = True) 17-03-18 03:47:56.334 -07 000000606 INF: Y Motor: Moving to 61.5726 mm, started at 60.7324 mm, delta = 0.8402 mm 17-03-18 03:47:56.334 -07 000000424 INF: FPGA: Recv ZDACW 17-03-18 03:47:56.344 -07 000000590 INF: FPGA: 'ZDACW 38869' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:47:56.344 -07 000000438 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror] 17-03-18 03:47:56.354 -07 000000606 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 03:47:56.354 -07 000000461 INF: FPGA: Recv YRDPOS 124380 17-03-18 03:47:56.364 -07 000000590 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-18 03:47:56.364 -07 000000606 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 28 ms overall 17-03-18 03:47:56.364 -07 000000606 INF: Y Motor: Encoder = 124380 = motor step 97171.9 = 60.7324 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 03:47:56.364 -07 000000606 INF: Y Motor: Last commanded position = 60.7426 mm (97188.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True 17-03-18 03:47:56.364 -07 000000606 INF: Y Motor: Moving 1344 steps-21 17-03-18 03:47:56.364 -07 000000501 INF: FPGA: Recv ZDACR 38869 17-03-18 03:47:56.374 -07 000000590 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall 17-03-18 03:47:56.374 -07 000000590 INF: Z Motor: MoveAbsStepped took 39 ms (did NOT wait for settling yet)) 17-03-18 03:47:56.374 -07 000000606 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor] 17-03-18 03:47:56.544 -07 000000569 INF: FPGA: Recv FOCMRRFOC 17-03-18 03:47:56.544 -07 000000438 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 212 ms overall 17-03-18 03:47:56.604 -07 000000424 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-18 03:47:56.604 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 116. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1683, R2=1752, Total=3435. Warn if over 250 bubbles per interval. 17-03-18 03:47:56.644 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) end. Duration was 396 ms. 17-03-18 03:47:56.644 -07 000000581 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 399 ms. 17-03-18 03:47:56.644 -07 000000581 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms. 17-03-18 03:47:56.644 -07 000000581 INF: Camera: CopyActivePixFullImage start. 17-03-18 03:47:56.644 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms. 17-03-18 03:47:56.644 -07 000000382 INF: Camera: CopyActivePixFullImage start. 17-03-18 03:47:56.654 -07 000000581 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-18 03:47:56.654 -07 000000581 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 522 ms. 17-03-18 03:47:56.654 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-18 03:47:56.664 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 526 ms. 17-03-18 03:47:56.754 -07 000000501 INF: FPGA: Recv YMVTILE 17-03-18 03:47:56.754 -07 000000606 INF: FPGA: 'YMVTILE 1327' command took 2 ms to send, 370 ms to get response, and 389 ms overall 17-03-18 03:47:56.794 -07 000000606 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 03:47:56.804 -07 000000438 INF: FPGA: Recv YRDPOS 126081 17-03-18 03:47:56.804 -07 000000606 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall 17-03-18 03:47:56.804 -07 000000606 INF: Y Motor: Encoder = 126081 = motor step 98500.8 = 61.5630 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 03:47:56.804 -07 000000606 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm) 17-03-18 03:47:56.804 -07 000000606 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 389 ms, distance = 0.840 mm, average velocity = 2.160 mm/sec 17-03-18 03:47:57.754 -07 000000606 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 03:47:58.324 -07 000000382 INF: FPGA: Recv YRDPOS 126081 17-03-18 03:47:58.334 -07 000000606 INF: FPGA: 'YRDPOS' command took 0 ms to send, 570 ms to get response, and 580 ms overall 17-03-18 03:47:58.334 -07 000000606 INF: Y Motor: Encoder = 126081 = motor step 98500.8 = 61.5630 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 03:47:58.364 -07 000000606 INF: Y Motor: After move to 61.572609, error = -0.009621, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm 17-03-18 03:47:58.364 -07 000000606 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm) 17-03-18 03:47:58.364 -07 000000606 INF: Y Motor: Moved to 61.5630 after 2034 ms (table move) 17-03-18 03:47:58.364 -07 000000474 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177931 mm (DAC = 38869) 17-03-18 03:47:58.374 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:47:58.374 -07 000000382 INF: FPGA: Recv ZSGSRD 36988 17-03-18 03:47:58.384 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-18 03:47:58.384 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:47:58.384 -07 000000382 INF: FPGA: Recv ZSGSRD 36989 17-03-18 03:47:58.394 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:47:58.394 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:47:58.394 -07 000000424 INF: FPGA: Recv ZSGSRD 36986 17-03-18 03:47:58.404 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:47:58.404 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:47:58.404 -07 000000382 INF: FPGA: Recv ZSGSRD 36982 17-03-18 03:47:58.414 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:47:58.414 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:47:58.414 -07 000000626 INF: FPGA: Recv ZSGSRD 36991 17-03-18 03:47:58.424 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:47:58.424 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:47:58.424 -07 000000590 INF: FPGA: Recv ZSGSRD 36984 17-03-18 03:47:58.434 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:47:58.434 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:47:58.434 -07 000000444 INF: FPGA: Recv ZSGSRD 36986 17-03-18 03:47:58.444 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:47:58.444 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:47:58.444 -07 000000606 INF: FPGA: Recv ZSGSRD 36991 17-03-18 03:47:58.454 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:47:58.454 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:47:58.454 -07 000000590 INF: FPGA: Recv ZSGSRD 36989 17-03-18 03:47:58.464 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall 17-03-18 03:47:58.464 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:47:58.464 -07 000000444 INF: FPGA: Recv ZSGSRD 36990 17-03-18 03:47:58.474 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:47:58.474 -07 000000474 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-18 03:47:58.474 -07 000000626 INF: FPGA: Recv ZPIEZORD 33179 17-03-18 03:47:58.484 -07 000000474 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:47:58.484 -07 000000474 INF: Z Motor: Piezo is near 50.9 V (nominally 0 to 100 V), expect near 59.3 V, since DAC is at 5.931 V. Piezo Error = -8.4 V. 17-03-18 03:47:58.484 -07 000000474 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.9 um, Read 10 ADC samples: Avg = 36988 (-177.0 uncal um), Error = 0.9 uncal um, Median = 36988 (-177.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 36982 (-177.0 uncal um), Max = 36991 (-177.1 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um) 17-03-18 03:47:58.484 -07 000000474 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36988, posNoise = 3, negNoise = 6 17-03-18 03:47:58.484 -07 000000474 INF: Z Motor: After move to -0.177931, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-18 03:47:58.484 -07 000000474 INF: Z Motor: Settle wait time = 2038 ms, measure time = 111 ms (allowed 150 ms), total time = 2149 ms 17-03-18 03:47:58.484 -07 000000474 INF: Z Motor: Waiting extra 39 ms after reading position to reach expected total of 150 ms 17-03-18 03:47:58.524 -07 000000474 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2193 ms 17-03-18 03:47:58.524 -07 000000474 INF: Y Motor: Restored settling times back to 3000 or 1100 ms 17-03-18 03:47:58.524 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-18 03:47:58.524 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-18 03:47:58.524 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-18 03:47:58.524 -07 000000438 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-18 03:47:58.524 -07 000000461 INF: Disarm and arm camera sensor 0: ROITrigger start. 17-03-18 03:47:58.524 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-18 03:47:58.524 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms. 17-03-18 03:47:58.524 -07 000000461 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start. 17-03-18 03:47:58.524 -07 000000461 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms. 17-03-18 03:47:58.534 -07 000000461 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start. 17-03-18 03:47:58.534 -07 000000461 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 8 ms. 17-03-18 03:47:58.534 -07 000000461 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms. 17-03-18 03:47:58.544 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera] 17-03-18 03:47:58.584 -07 000000626 INF: FPGA: Recv @CAMSNAP turning led on 40 17-03-18 03:47:58.884 -07 000000474 INF: FPGA: Recv @CAMSNAP img rdy 340 17-03-18 03:47:58.884 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340 17-03-18 03:47:58.884 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start. 17-03-18 03:47:58.884 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 639799168, 0x0, 559484976) start. 17-03-18 03:47:58.924 -07 000000606 INF: FPGA: Recv @CAMSNAP 380 17-03-18 03:47:58.924 -07 000000501 INF: FPGA: Recv CAMSNAP 17-03-18 03:47:58.924 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 384 ms overall 17-03-18 03:47:59.004 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 639799168, 0x0, 559484976) end. Duration was 114 ms. 17-03-18 03:47:59.004 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-18 03:47:59.004 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms. 17-03-18 03:47:59.004 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms. 17-03-18 03:47:59.024 -07 000000590 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-18 03:47:59.024 -07 000000626 INF: Autofocus start 17-03-18 03:47:59.024 -07 000000626 INF: MeasureProfile start 17-03-18 03:47:59.024 -07 000000444 INF: FPGA: Recv FOCMRRCUR 17-03-18 03:47:59.034 -07 000000590 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall 17-03-18 03:47:59.034 -07 000000590 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror] 17-03-18 03:47:59.034 -07 000000626 INF: MeasureProfile done 17-03-18 03:47:59.034 -07 000000626 INF: X=32 Z correction [um]=0.09220707 17-03-18 03:47:59.034 -07 000000626 INF: Autofocus finished 17-03-18 03:47:59.234 -07 000000444 INF: FPGA: Recv FOCMRRIMG 17-03-18 03:47:59.234 -07 000000590 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall 17-03-18 03:47:59.234 -07 000000610 INF: ------------ Scan Snapping tile 3 at Y-position 61.56298828125, Z-position -0.177942110710589. ---------- 17-03-18 03:47:59.234 -07 000000610 INF: Cycle 117 Tile 3 Exposure Settings A 411 G 198 T 198 C 411 17-03-18 03:47:59.244 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37401, sync = True, waitForSettling = True) 17-03-18 03:47:59.244 -07 000000610 INF: Z Motor: Moving to -0.171211 mm, started at -0.177942 mm, distance = 6.73 um 17-03-18 03:47:59.244 -07 000000610 INF: FPGA: Xmit ZDACW 37401\n [Z Motor] 17-03-18 03:47:59.244 -07 000000474 INF: FPGA: Recv ZDACW 17-03-18 03:47:59.254 -07 000000610 INF: FPGA: 'ZDACW 37401' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:47:59.254 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-18 03:47:59.254 -07 000000474 INF: FPGA: Recv ZDACR 37401 17-03-18 03:47:59.264 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:47:59.264 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-18 03:47:59.414 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:47:59.414 -07 000000382 INF: FPGA: Recv ZSGSRD 35943 17-03-18 03:47:59.424 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-18 03:47:59.424 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:47:59.424 -07 000000382 INF: FPGA: Recv ZSGSRD 35949 17-03-18 03:47:59.434 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:47:59.434 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:47:59.434 -07 000000461 INF: FPGA: Recv ZSGSRD 35936 17-03-18 03:47:59.444 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:47:59.444 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:47:59.444 -07 000000382 INF: FPGA: Recv ZSGSRD 35934 17-03-18 03:47:59.454 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:47:59.454 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:47:59.454 -07 000000461 INF: FPGA: Recv ZSGSRD 35949 17-03-18 03:47:59.464 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:47:59.464 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:47:59.464 -07 000000501 INF: FPGA: Recv ZSGSRD 35936 17-03-18 03:47:59.474 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:47:59.474 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:47:59.474 -07 000000501 INF: FPGA: Recv ZSGSRD 35941 17-03-18 03:47:59.484 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:47:59.484 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:47:59.484 -07 000000501 INF: FPGA: Recv ZSGSRD 35939 17-03-18 03:47:59.494 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:47:59.494 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:47:59.494 -07 000000424 INF: FPGA: Recv ZSGSRD 35940 17-03-18 03:47:59.504 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:47:59.504 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:47:59.504 -07 000000626 INF: FPGA: Recv ZSGSRD 35942 17-03-18 03:47:59.514 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:47:59.514 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-18 03:47:59.514 -07 000000626 INF: FPGA: Recv ZPIEZORD 31777 17-03-18 03:47:59.524 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:47:59.524 -07 000000610 INF: Z Motor: Piezo is near 47.9 V (nominally 0 to 100 V), expect near 57.1 V, since DAC is at 5.707 V. Piezo Error = -9.2 V. 17-03-18 03:47:59.524 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.2 um, Read 10 ADC samples: Avg = 35941 (-170.3 uncal um), Error = 0.9 uncal um, Median = 35940 (-170.3 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 35934 (-170.3 uncal um), Max = 35949 (-170.4 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um) 17-03-18 03:47:59.524 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35941, posNoise = 8, negNoise = 7 17-03-18 03:47:59.524 -07 000000610 INF: Z Motor: After move to -0.171211, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-18 03:47:59.524 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms) 17-03-18 03:47:59.524 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-18 03:47:59.524 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-18 03:47:59.524 -07 000000474 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-18 03:47:59.524 -07 000000438 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-18 03:47:59.524 -07 000000606 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start. 17-03-18 03:47:59.524 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-18 03:47:59.524 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start. 17-03-18 03:47:59.524 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) start. 17-03-18 03:47:59.524 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-18 03:47:59.524 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start. 17-03-18 03:47:59.524 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms. 17-03-18 03:47:59.524 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start. 17-03-18 03:47:59.534 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms. 17-03-18 03:47:59.534 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start. 17-03-18 03:47:59.534 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms. 17-03-18 03:47:59.534 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start. 17-03-18 03:47:59.544 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms. 17-03-18 03:47:59.544 -07 000000606 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms. 17-03-18 03:47:59.544 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms. 17-03-18 03:47:59.544 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms. 17-03-18 03:47:59.544 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 411 411 198 198 37578 150\n [Camera] 17-03-18 03:47:59.744 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP turning red on 192 17-03-18 03:48:00.164 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 605 17-03-18 03:48:00.164 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 605 17-03-18 03:48:00.164 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-18 03:48:00.164 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 605 17-03-18 03:48:00.164 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 605 17-03-18 03:48:00.164 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-18 03:48:00.174 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-18 03:48:00.174 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 2169959960, 0x0, 391868352) start. 17-03-18 03:48:00.174 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-18 03:48:00.174 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2205382224, 0x0, 418435064) start. 17-03-18 03:48:00.354 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37578 796 17-03-18 03:48:00.504 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning grn on 946 17-03-18 03:48:00.554 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 2169959960, 0x0, 391868352) end. Duration was 381 ms. 17-03-18 03:48:00.554 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms. 17-03-18 03:48:00.554 -07 000000474 INF: Camera: CopyActivePixFullImage start. 17-03-18 03:48:00.554 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2205382224, 0x0, 418435064) end. Duration was 381 ms. 17-03-18 03:48:00.554 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms. 17-03-18 03:48:00.554 -07 000000626 INF: Camera: CopyActivePixFullImage start. 17-03-18 03:48:00.554 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-18 03:48:00.554 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 393 ms. 17-03-18 03:48:00.554 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-18 03:48:00.564 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 400 ms. 17-03-18 03:48:00.704 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1146 17-03-18 03:48:00.704 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1146 17-03-18 03:48:00.704 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-18 03:48:00.704 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-18 03:48:00.704 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) start. 17-03-18 03:48:00.704 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1146 17-03-18 03:48:00.704 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1146 17-03-18 03:48:00.704 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-18 03:48:00.704 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-18 03:48:00.704 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2369425112, 0x0, 418435064) start. 17-03-18 03:48:00.894 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP 1336 17-03-18 03:48:00.894 -07 000000444 INF: FPGA: Recv CAMDBLSNAP 17-03-18 03:48:00.894 -07 000000610 INF: FPGA: 'CAMDBLSNAP 411 411 198 198 37578 150' command took 2 ms to send, 1332 ms to get response, and 1344 ms overall 17-03-18 03:48:00.894 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880 17-03-18 03:48:00.894 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 4 at Y-position 61.56298828125, Z-Position -0.171215960598165. ------ 17-03-18 03:48:00.894 -07 000000590 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-18 03:48:00.894 -07 000000474 INF: Y Motor: MoveYZ optimized starting. Moving Y to 62.4026 mm, moving Z to -0.17754 mm 17-03-18 03:48:00.894 -07 000000474 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move 17-03-18 03:48:00.904 -07 000000461 INF: Y Motor: Entering MoveAbsStepped (target = 99844 steps, sync = True, waitForSettling = True) 17-03-18 03:48:00.904 -07 000000461 INF: Y Motor: Moving to 62.4026 mm, started at 61.5630 mm, delta = 0.8396 mm 17-03-18 03:48:00.904 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 03:48:00.904 -07 000000444 INF: Z Motor: Entering MoveAbsStepped (DAC = 38783, sync = True, waitForSettling = False) 17-03-18 03:48:00.904 -07 000000444 INF: Z Motor: Moving to -0.177537 mm, started at -0.171216 mm, distance = -6.32 um 17-03-18 03:48:00.904 -07 000000626 INF: FPGA: Recv FOCMRRCUR 17-03-18 03:48:00.904 -07 000000590 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall 17-03-18 03:48:00.904 -07 000000626 INF: FPGA: Recv YRDPOS 126082 17-03-18 03:48:00.914 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:48:00.914 -07 000000461 INF: Y Motor: Encoder = 126082 = motor step 98501.6 = 61.5635 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 03:48:00.914 -07 000000590 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror] 17-03-18 03:48:00.914 -07 000000461 INF: Y Motor: Last commanded position = 61.5726 mm (98516.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True 17-03-18 03:48:00.914 -07 000000461 INF: Y Motor: Moving 1343 steps-20 17-03-18 03:48:00.924 -07 000000444 INF: FPGA: Xmit ZDACW 38783\n [Z Motor] 17-03-18 03:48:00.924 -07 000000606 INF: FPGA: Recv ZDACW 17-03-18 03:48:00.934 -07 000000461 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor] 17-03-18 03:48:00.934 -07 000000444 INF: FPGA: 'ZDACW 38783' command took 0 ms to send, 0 ms to get response, and 29 ms overall 17-03-18 03:48:00.944 -07 000000444 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-18 03:48:00.944 -07 000000424 INF: FPGA: Recv ZDACR 38783 17-03-18 03:48:00.954 -07 000000444 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall 17-03-18 03:48:00.954 -07 000000444 INF: Z Motor: MoveAbsStepped took 49 ms (did NOT wait for settling yet)) 17-03-18 03:48:00.964 -07 000000569 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 117, FrontChillerTemperature: 4.014009, 17-03-18 03:48:01.104 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) end. Duration was 401 ms. 17-03-18 03:48:01.104 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms. 17-03-18 03:48:01.104 -07 000000382 INF: Camera: CopyActivePixFullImage start. 17-03-18 03:48:01.104 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2369425112, 0x0, 418435064) end. Duration was 400 ms. 17-03-18 03:48:01.104 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms. 17-03-18 03:48:01.104 -07 000000501 INF: Camera: CopyActivePixFullImage start. 17-03-18 03:48:01.114 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-18 03:48:01.114 -07 000000438 INF: FPGA: Recv FOCMRRFOC 17-03-18 03:48:01.114 -07 000000590 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 193 ms to get response, and 212 ms overall 17-03-18 03:48:01.114 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms. 17-03-18 03:48:01.114 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 410 ms. 17-03-18 03:48:01.124 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms. 17-03-18 03:48:01.304 -07 000000424 INF: FPGA: Recv YMVTILE 17-03-18 03:48:01.304 -07 000000461 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 394 ms overall 17-03-18 03:48:01.354 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 03:48:01.364 -07 000000590 INF: FPGA: Recv YRDPOS 127785 17-03-18 03:48:01.364 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall 17-03-18 03:48:01.364 -07 000000461 INF: Y Motor: Encoder = 127785 = motor step 99832.0 = 62.3950 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 03:48:01.364 -07 000000461 INF: Y Motor: Position error before settling (table move) = -16 encoder counts (-0.008 mm) 17-03-18 03:48:01.364 -07 000000461 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.840 mm, average velocity = 2.131 mm/sec 17-03-18 03:48:01.604 -07 000000569 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-18 03:48:01.604 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 116. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1683, R2=1752, Total=3435. Warn if over 250 bubbles per interval. 17-03-18 03:48:02.314 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 03:48:02.314 -07 000000382 INF: FPGA: Recv YRDPOS 127785 17-03-18 03:48:02.324 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-18 03:48:02.324 -07 000000461 INF: Y Motor: Encoder = 127785 = motor step 99832.0 = 62.3950 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 03:48:02.354 -07 000000461 INF: Y Motor: After move to 62.402607, error = -0.007587, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm 17-03-18 03:48:02.354 -07 000000461 INF: Y Motor: Position error after settling (table move) = -16 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm) 17-03-18 03:48:02.354 -07 000000461 INF: Y Motor: Moved to 62.3950 after 1451 ms (table move) 17-03-18 03:48:02.354 -07 000000474 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177537 mm (DAC = 38783) 17-03-18 03:48:02.354 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:48:02.364 -07 000000581 INF: FPGA: Recv ZSGSRD 36923 17-03-18 03:48:02.364 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall 17-03-18 03:48:02.364 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:48:02.364 -07 000000444 INF: FPGA: Recv ZSGSRD 36927 17-03-18 03:48:02.374 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:48:02.374 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:48:02.374 -07 000000444 INF: FPGA: Recv ZSGSRD 36927 17-03-18 03:48:02.384 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:48:02.384 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:48:02.384 -07 000000444 INF: FPGA: Recv ZSGSRD 36926 17-03-18 03:48:02.394 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:48:02.394 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:48:02.394 -07 000000444 INF: FPGA: Recv ZSGSRD 36925 17-03-18 03:48:02.404 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:48:02.404 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:48:02.404 -07 000000438 INF: FPGA: Recv ZSGSRD 36927 17-03-18 03:48:02.414 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:48:02.414 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:48:02.414 -07 000000438 INF: FPGA: Recv ZSGSRD 36923 17-03-18 03:48:02.424 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:48:02.424 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:48:02.424 -07 000000438 INF: FPGA: Recv ZSGSRD 36923 17-03-18 03:48:02.434 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:48:02.434 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:48:02.434 -07 000000438 INF: FPGA: Recv ZSGSRD 36928 17-03-18 03:48:02.444 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:48:02.444 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:48:02.444 -07 000000438 INF: FPGA: Recv ZSGSRD 36925 17-03-18 03:48:02.454 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:48:02.454 -07 000000474 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-18 03:48:02.454 -07 000000438 INF: FPGA: Recv ZPIEZORD 33083 17-03-18 03:48:02.464 -07 000000474 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:48:02.464 -07 000000474 INF: Z Motor: Piezo is near 50.7 V (nominally 0 to 100 V), expect near 59.2 V, since DAC is at 5.918 V. Piezo Error = -8.5 V. 17-03-18 03:48:02.464 -07 000000474 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.5 um, Read 10 ADC samples: Avg = 36925 (-176.6 uncal um), Error = 0.9 uncal um, Median = 36926 (-176.7 uncal um), StdDev = 2 (0.0 uncal um), Range = 5 (0.0 uncal um), Min = 36923 (-176.6 uncal um), Max = 36928 (-176.7 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 2 (0.0 uncal um) 17-03-18 03:48:02.464 -07 000000474 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36925, posNoise = 3, negNoise = 2 17-03-18 03:48:02.464 -07 000000474 INF: Z Motor: After move to -0.177537, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-18 03:48:02.464 -07 000000474 INF: Z Motor: Settle wait time = 1454 ms, measure time = 107 ms (allowed 150 ms), total time = 1561 ms 17-03-18 03:48:02.464 -07 000000474 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms 17-03-18 03:48:02.514 -07 000000474 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1612 ms 17-03-18 03:48:02.514 -07 000000474 INF: Y Motor: Restored settling times back to 3000 or 1100 ms 17-03-18 03:48:02.514 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-18 03:48:02.514 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-18 03:48:02.514 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-18 03:48:02.514 -07 000000438 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-18 03:48:02.514 -07 000000461 INF: Disarm and arm camera sensor 0: ROITrigger start. 17-03-18 03:48:02.514 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-18 03:48:02.514 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms. 17-03-18 03:48:02.514 -07 000000461 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start. 17-03-18 03:48:02.514 -07 000000461 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms. 17-03-18 03:48:02.514 -07 000000461 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start. 17-03-18 03:48:02.524 -07 000000461 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms. 17-03-18 03:48:02.524 -07 000000461 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms. 17-03-18 03:48:02.534 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera] 17-03-18 03:48:02.574 -07 000000444 INF: FPGA: Recv @CAMSNAP turning led on 40 17-03-18 03:48:02.874 -07 000000606 INF: FPGA: Recv @CAMSNAP img rdy 340 17-03-18 03:48:02.874 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340 17-03-18 03:48:02.874 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start. 17-03-18 03:48:02.984 -07 000000501 INF: FPGA: Recv @CAMSNAP 380 17-03-18 03:48:02.984 -07 000000501 INF: FPGA: Recv CAMSNAP 17-03-18 03:48:02.984 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 449 ms to get response, and 457 ms overall 17-03-18 03:48:02.984 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2240804488, 0x0, 559484976) start. 17-03-18 03:48:03.104 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2240804488, 0x0, 559484976) end. Duration was 114 ms. 17-03-18 03:48:03.104 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-18 03:48:03.104 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms. 17-03-18 03:48:03.104 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 227 ms. 17-03-18 03:48:03.184 -07 000000424 INF: Autofocus start 17-03-18 03:48:03.184 -07 000000424 INF: MeasureProfile start 17-03-18 03:48:03.184 -07 000000606 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-18 03:48:03.184 -07 000000501 INF: FPGA: Recv FOCMRRCUR 17-03-18 03:48:03.194 -07 000000606 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall 17-03-18 03:48:03.194 -07 000000606 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror] 17-03-18 03:48:03.194 -07 000000424 INF: MeasureProfile done 17-03-18 03:48:03.194 -07 000000424 INF: X=-32 Z correction [um]=-0.2344 17-03-18 03:48:03.194 -07 000000424 INF: Autofocus finished 17-03-18 03:48:03.394 -07 000000382 INF: FPGA: Recv FOCMRRIMG 17-03-18 03:48:03.394 -07 000000606 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall 17-03-18 03:48:03.394 -07 000000610 INF: ------------ Scan Snapping tile 4 at Y-position 62.39501953125, Z-position -0.177537385345658. ---------- 17-03-18 03:48:03.394 -07 000000610 INF: Cycle 117 Tile 4 Exposure Settings A 411 G 198 T 198 C 411 17-03-18 03:48:03.404 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37245, sync = True, waitForSettling = True) 17-03-18 03:48:03.404 -07 000000610 INF: Z Motor: Moving to -0.170497 mm, started at -0.177537 mm, distance = 7.04 um 17-03-18 03:48:03.404 -07 000000610 INF: FPGA: Xmit ZDACW 37245\n [Z Motor] 17-03-18 03:48:03.404 -07 000000438 INF: FPGA: Recv ZDACW 17-03-18 03:48:03.414 -07 000000610 INF: FPGA: 'ZDACW 37245' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:48:03.414 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-18 03:48:03.414 -07 000000501 INF: FPGA: Recv ZDACR 37245 17-03-18 03:48:03.424 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:48:03.424 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-18 03:48:03.574 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:48:03.574 -07 000000438 INF: FPGA: Recv ZSGSRD 35830 17-03-18 03:48:03.584 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-18 03:48:03.584 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:48:03.584 -07 000000626 INF: FPGA: Recv ZSGSRD 35835 17-03-18 03:48:03.594 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:48:03.594 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:48:03.594 -07 000000438 INF: FPGA: Recv ZSGSRD 35829 17-03-18 03:48:03.604 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:48:03.604 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:48:03.604 -07 000000581 INF: FPGA: Recv ZSGSRD 35828 17-03-18 03:48:03.614 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:48:03.614 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:48:03.614 -07 000000501 INF: FPGA: Recv ZSGSRD 35834 17-03-18 03:48:03.624 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:48:03.624 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:48:03.624 -07 000000444 INF: FPGA: Recv ZSGSRD 35836 17-03-18 03:48:03.634 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:48:03.634 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:48:03.634 -07 000000438 INF: FPGA: Recv ZSGSRD 35824 17-03-18 03:48:03.644 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:48:03.644 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:48:03.644 -07 000000590 INF: FPGA: Recv ZSGSRD 35834 17-03-18 03:48:03.654 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:48:03.654 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:48:03.654 -07 000000581 INF: FPGA: Recv ZSGSRD 35839 17-03-18 03:48:03.664 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:48:03.664 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:48:03.664 -07 000000424 INF: FPGA: Recv ZSGSRD 35831 17-03-18 03:48:03.674 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:48:03.674 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-18 03:48:03.674 -07 000000581 INF: FPGA: Recv ZPIEZORD 31587 17-03-18 03:48:03.684 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:48:03.684 -07 000000610 INF: Z Motor: Piezo is near 47.5 V (nominally 0 to 100 V), expect near 56.8 V, since DAC is at 5.683 V. Piezo Error = -9.4 V. 17-03-18 03:48:03.684 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.5 um, Read 10 ADC samples: Avg = 35832 (-169.6 uncal um), Error = 0.9 uncal um, Median = 35832 (-169.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 35824 (-169.6 uncal um), Max = 35839 (-169.7 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um) 17-03-18 03:48:03.684 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35832, posNoise = 7, negNoise = 8 17-03-18 03:48:03.684 -07 000000610 INF: Z Motor: After move to -0.170497, error = -0.000019, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-18 03:48:03.684 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms) 17-03-18 03:48:03.684 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-18 03:48:03.684 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-18 03:48:03.684 -07 000000581 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-18 03:48:03.684 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-18 03:48:03.684 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start. 17-03-18 03:48:03.684 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-18 03:48:03.684 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start. 17-03-18 03:48:03.684 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) start. 17-03-18 03:48:03.684 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms. 17-03-18 03:48:03.684 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start. 17-03-18 03:48:03.684 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms. 17-03-18 03:48:03.684 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start. 17-03-18 03:48:03.694 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms. 17-03-18 03:48:03.694 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms. 17-03-18 03:48:03.694 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start. 17-03-18 03:48:03.694 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start. 17-03-18 03:48:03.694 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms. 17-03-18 03:48:03.694 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms. 17-03-18 03:48:03.704 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms. 17-03-18 03:48:03.704 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms. 17-03-18 03:48:03.724 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 411 411 198 198 37421 150\n [Camera] 17-03-18 03:48:03.914 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning red on 192 17-03-18 03:48:04.334 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 603 17-03-18 03:48:04.334 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 603 17-03-18 03:48:04.334 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-18 03:48:04.334 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 603 17-03-18 03:48:04.334 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 603 17-03-18 03:48:04.334 -07 000000444 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-18 03:48:04.334 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-18 03:48:04.334 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2165554656, 0x0, 391868352) start. 17-03-18 03:48:04.344 -07 000000444 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-18 03:48:04.344 -07 000000444 INF: Camera: sBCa_ReadImage(785074704, 2200976920, 0x0, 418435064) start. 17-03-18 03:48:04.524 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37421 796 17-03-18 03:48:04.674 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP turning grn on 946 17-03-18 03:48:04.734 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2165554656, 0x0, 391868352) end. Duration was 393 ms. 17-03-18 03:48:04.734 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms. 17-03-18 03:48:04.734 -07 000000501 INF: Camera: CopyActivePixFullImage start. 17-03-18 03:48:04.734 -07 000000444 INF: Camera: sBCa_ReadImage(785074704, 2200976920, 0x0, 418435064) end. Duration was 393 ms. 17-03-18 03:48:04.734 -07 000000444 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 393 ms. 17-03-18 03:48:04.734 -07 000000444 INF: Camera: CopyActivePixFullImage start. 17-03-18 03:48:04.734 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-18 03:48:04.734 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms. 17-03-18 03:48:04.734 -07 000000444 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-18 03:48:04.744 -07 000000444 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms. 17-03-18 03:48:04.874 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1144 17-03-18 03:48:04.874 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1144 17-03-18 03:48:04.874 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-18 03:48:04.874 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1144 17-03-18 03:48:04.874 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1144 17-03-18 03:48:04.874 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-18 03:48:04.994 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-18 03:48:04.994 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) start. 17-03-18 03:48:04.994 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-18 03:48:04.994 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start. 17-03-18 03:48:05.064 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP 1337 17-03-18 03:48:05.064 -07 000000444 INF: FPGA: Recv CAMDBLSNAP 17-03-18 03:48:05.064 -07 000000610 INF: FPGA: 'CAMDBLSNAP 411 411 198 198 37421 150' command took 2 ms to send, 1334 ms to get response, and 1361 ms overall 17-03-18 03:48:05.064 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880 17-03-18 03:48:05.064 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 5 at Y-position 62.39501953125, Z-Position -0.170515721474714. ------ 17-03-18 03:48:05.064 -07 000000438 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-18 03:48:05.064 -07 000000626 INF: Y Motor: MoveYZ optimized starting. Moving Y to 63.2326 mm, moving Z to -0.17698 mm 17-03-18 03:48:05.064 -07 000000626 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move 17-03-18 03:48:05.074 -07 000000501 INF: FPGA: Recv FOCMRRCUR 17-03-18 03:48:05.074 -07 000000438 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 3 ms overall 17-03-18 03:48:05.074 -07 000000424 INF: Z Motor: Entering MoveAbsStepped (DAC = 38662, sync = True, waitForSettling = False) 17-03-18 03:48:05.074 -07 000000424 INF: Z Motor: Moving to -0.176983 mm, started at -0.170516 mm, distance = -6.47 um 17-03-18 03:48:05.074 -07 000000438 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror] 17-03-18 03:48:05.074 -07 000000444 INF: Y Motor: Entering MoveAbsStepped (target = 101172 steps, sync = True, waitForSettling = True) 17-03-18 03:48:05.074 -07 000000444 INF: Y Motor: Moving to 63.2326 mm, started at 62.3950 mm, delta = 0.8376 mm 17-03-18 03:48:05.084 -07 000000424 INF: FPGA: Xmit ZDACW 38662\n [Z Motor] 17-03-18 03:48:05.084 -07 000000581 INF: FPGA: Recv ZDACW 17-03-18 03:48:05.094 -07 000000444 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 03:48:05.094 -07 000000424 INF: FPGA: 'ZDACW 38662' command took 0 ms to send, 0 ms to get response, and 17 ms overall 17-03-18 03:48:05.094 -07 000000581 INF: FPGA: Recv YRDPOS 127785 17-03-18 03:48:05.104 -07 000000444 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 26 ms overall 17-03-18 03:48:05.104 -07 000000444 INF: Y Motor: Encoder = 127785 = motor step 99832.0 = 62.3950 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 03:48:05.104 -07 000000444 INF: Y Motor: Last commanded position = 62.4026 mm (99844.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True 17-03-18 03:48:05.104 -07 000000444 INF: Y Motor: Moving 1340 steps-16 17-03-18 03:48:05.104 -07 000000424 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-18 03:48:05.104 -07 000000501 INF: FPGA: Recv ZDACR 38662 17-03-18 03:48:05.114 -07 000000424 INF: FPGA: 'ZDACR' command took 1 ms to send, 0 ms to get response, and 19 ms overall 17-03-18 03:48:05.114 -07 000000424 INF: Z Motor: MoveAbsStepped took 37 ms (did NOT wait for settling yet)) 17-03-18 03:48:05.114 -07 000000444 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor] 17-03-18 03:48:05.274 -07 000000581 INF: FPGA: Recv FOCMRRFOC 17-03-18 03:48:05.274 -07 000000438 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 195 ms to get response, and 202 ms overall 17-03-18 03:48:05.374 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) end. Duration was 387 ms. 17-03-18 03:48:05.374 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 387 ms. 17-03-18 03:48:05.374 -07 000000590 INF: Camera: CopyActivePixFullImage start. 17-03-18 03:48:05.384 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-18 03:48:05.384 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 389 ms. 17-03-18 03:48:05.384 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 389 ms. 17-03-18 03:48:05.384 -07 000000382 INF: Camera: CopyActivePixFullImage start. 17-03-18 03:48:05.384 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-18 03:48:05.384 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 512 ms. 17-03-18 03:48:05.384 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 512 ms. 17-03-18 03:48:05.484 -07 000000590 INF: FPGA: Recv YMVTILE 17-03-18 03:48:05.484 -07 000000444 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall 17-03-18 03:48:05.534 -07 000000444 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 03:48:05.534 -07 000000424 INF: FPGA: Recv YRDPOS 129481 17-03-18 03:48:05.544 -07 000000444 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall 17-03-18 03:48:05.544 -07 000000444 INF: Y Motor: Encoder = 129481 = motor step 101157.0 = 63.2231 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 03:48:05.544 -07 000000444 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm) 17-03-18 03:48:05.544 -07 000000444 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.838 mm, average velocity = 2.159 mm/sec 17-03-18 03:48:06.324 -07 000000590 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 117, FrontChillerTemperature: 4.011254, 17-03-18 03:48:06.494 -07 000000444 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 03:48:06.494 -07 000000606 INF: FPGA: Recv YRDPOS 129482 17-03-18 03:48:06.504 -07 000000444 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-18 03:48:06.504 -07 000000444 INF: Y Motor: Encoder = 129482 = motor step 101157.8 = 63.2236 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 03:48:06.524 -07 000000444 INF: Y Motor: After move to 63.232609, error = -0.008976, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm 17-03-18 03:48:06.524 -07 000000444 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 1 counts (0.000 mm) 17-03-18 03:48:06.524 -07 000000444 INF: Y Motor: Moved to 63.2236 after 1456 ms (table move) 17-03-18 03:48:06.534 -07 000000626 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176983 mm (DAC = 38662) 17-03-18 03:48:06.534 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:48:06.534 -07 000000438 INF: FPGA: Recv ZSGSRD 36849 17-03-18 03:48:06.544 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall 17-03-18 03:48:06.544 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:48:06.544 -07 000000382 INF: FPGA: Recv ZSGSRD 36831 17-03-18 03:48:06.554 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:48:06.554 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:48:06.554 -07 000000438 INF: FPGA: Recv ZSGSRD 36839 17-03-18 03:48:06.564 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:48:06.564 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:48:06.564 -07 000000444 INF: FPGA: Recv ZSGSRD 36846 17-03-18 03:48:06.574 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:48:06.574 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:48:06.574 -07 000000581 INF: FPGA: Recv ZSGSRD 36841 17-03-18 03:48:06.584 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:48:06.584 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:48:06.584 -07 000000382 INF: FPGA: Recv ZSGSRD 36842 17-03-18 03:48:06.594 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:48:06.594 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:48:06.594 -07 000000590 INF: FPGA: Recv ZSGSRD 36835 17-03-18 03:48:06.604 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:48:06.604 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:48:06.604 -07 000000501 INF: FPGA: Recv ZSGSRD 36842 17-03-18 03:48:06.604 -07 000000444 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-18 03:48:06.604 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 116. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1683, R2=1752, Total=3435. Warn if over 250 bubbles per interval. 17-03-18 03:48:06.614 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:48:06.614 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:48:06.614 -07 000000581 INF: FPGA: Recv ZSGSRD 36835 17-03-18 03:48:06.624 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:48:06.624 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:48:06.624 -07 000000382 INF: FPGA: Recv ZSGSRD 36839 17-03-18 03:48:06.634 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:48:06.634 -07 000000626 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-18 03:48:06.634 -07 000000606 INF: FPGA: Recv ZPIEZORD 32997 17-03-18 03:48:06.644 -07 000000626 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:48:06.644 -07 000000626 INF: Z Motor: Piezo is near 50.5 V (nominally 0 to 100 V), expect near 59.0 V, since DAC is at 5.899 V. Piezo Error = -8.5 V. 17-03-18 03:48:06.644 -07 000000626 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.0 um, Read 10 ADC samples: Avg = 36840 (-176.1 uncal um), Error = 0.9 uncal um, Median = 36840 (-176.1 uncal um), StdDev = 5 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 36831 (-176.0 uncal um), Max = 36849 (-176.2 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 9 (0.1 uncal um) 17-03-18 03:48:06.644 -07 000000626 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36840, posNoise = 9, negNoise = 9 17-03-18 03:48:06.644 -07 000000626 INF: Z Motor: After move to -0.176983, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-18 03:48:06.644 -07 000000626 INF: Z Motor: Settle wait time = 1460 ms, measure time = 109 ms (allowed 150 ms), total time = 1569 ms 17-03-18 03:48:06.644 -07 000000626 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms 17-03-18 03:48:06.694 -07 000000626 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1620 ms 17-03-18 03:48:06.694 -07 000000626 INF: Y Motor: Restored settling times back to 3000 or 1100 ms 17-03-18 03:48:06.694 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-18 03:48:06.694 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-18 03:48:06.694 -07 000000444 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-18 03:48:06.694 -07 000000590 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-18 03:48:06.694 -07 000000581 INF: Disarm and arm camera sensor 0: ROITrigger start. 17-03-18 03:48:06.694 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-18 03:48:06.694 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms. 17-03-18 03:48:06.694 -07 000000581 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start. 17-03-18 03:48:06.704 -07 000000581 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms. 17-03-18 03:48:06.704 -07 000000581 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start. 17-03-18 03:48:06.704 -07 000000581 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms. 17-03-18 03:48:06.704 -07 000000581 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms. 17-03-18 03:48:06.714 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera] 17-03-18 03:48:06.754 -07 000000626 INF: FPGA: Recv @CAMSNAP turning led on 40 17-03-18 03:48:07.054 -07 000000438 INF: FPGA: Recv @CAMSNAP img rdy 340 17-03-18 03:48:07.054 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340 17-03-18 03:48:07.054 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start. 17-03-18 03:48:07.054 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 596199184, 0x0, 559484976) start. 17-03-18 03:48:07.094 -07 000000382 INF: FPGA: Recv @CAMSNAP 380 17-03-18 03:48:07.094 -07 000000626 INF: FPGA: Recv CAMSNAP 17-03-18 03:48:07.094 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 384 ms overall 17-03-18 03:48:07.174 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 596199184, 0x0, 559484976) end. Duration was 114 ms. 17-03-18 03:48:07.174 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-18 03:48:07.174 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms. 17-03-18 03:48:07.174 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms. 17-03-18 03:48:07.194 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-18 03:48:07.194 -07 000000438 INF: Autofocus start 17-03-18 03:48:07.194 -07 000000438 INF: MeasureProfile start 17-03-18 03:48:07.204 -07 000000581 INF: FPGA: Recv FOCMRRCUR 17-03-18 03:48:07.204 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 6 ms overall 17-03-18 03:48:07.204 -07 000000424 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror] 17-03-18 03:48:07.214 -07 000000438 INF: MeasureProfile done 17-03-18 03:48:07.214 -07 000000438 INF: X=64 Z correction [um]=0.2557664 17-03-18 03:48:07.214 -07 000000438 INF: Autofocus finished 17-03-18 03:48:07.404 -07 000000382 INF: FPGA: Recv FOCMRRIMG 17-03-18 03:48:07.404 -07 000000424 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 197 ms to get response, and 202 ms overall 17-03-18 03:48:07.414 -07 000000610 INF: ------------ Scan Snapping tile 5 at Y-position 63.2236328125, Z-position -0.176991327313609. ---------- 17-03-18 03:48:07.414 -07 000000610 INF: Cycle 117 Tile 5 Exposure Settings A 411 G 198 T 198 C 411 17-03-18 03:48:07.414 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37230, sync = True, waitForSettling = True) 17-03-18 03:48:07.414 -07 000000610 INF: Z Motor: Moving to -0.170428 mm, started at -0.176991 mm, distance = 6.56 um 17-03-18 03:48:07.414 -07 000000610 INF: FPGA: Xmit ZDACW 37230\n [Z Motor] 17-03-18 03:48:07.414 -07 000000438 INF: FPGA: Recv ZDACW 17-03-18 03:48:07.424 -07 000000610 INF: FPGA: 'ZDACW 37230' command took 0 ms to send, 0 ms to get response, and 6 ms overall 17-03-18 03:48:07.424 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-18 03:48:07.424 -07 000000382 INF: FPGA: Recv ZDACR 37230 17-03-18 03:48:07.434 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:48:07.434 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-18 03:48:07.584 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:48:07.584 -07 000000501 INF: FPGA: Recv ZSGSRD 35825 17-03-18 03:48:07.594 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:48:07.594 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:48:07.594 -07 000000501 INF: FPGA: Recv ZSGSRD 35820 17-03-18 03:48:07.604 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:48:07.604 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:48:07.604 -07 000000444 INF: FPGA: Recv ZSGSRD 35819 17-03-18 03:48:07.614 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:48:07.614 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:48:07.614 -07 000000626 INF: FPGA: Recv ZSGSRD 35819 17-03-18 03:48:07.624 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:48:07.624 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:48:07.624 -07 000000382 INF: FPGA: Recv ZSGSRD 35821 17-03-18 03:48:07.634 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:48:07.634 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:48:07.634 -07 000000626 INF: FPGA: Recv ZSGSRD 35823 17-03-18 03:48:07.644 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:48:07.644 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:48:07.644 -07 000000382 INF: FPGA: Recv ZSGSRD 35815 17-03-18 03:48:07.654 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:48:07.654 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:48:07.654 -07 000000626 INF: FPGA: Recv ZSGSRD 35819 17-03-18 03:48:07.664 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:48:07.664 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:48:07.664 -07 000000501 INF: FPGA: Recv ZSGSRD 35822 17-03-18 03:48:07.674 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:48:07.674 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:48:07.674 -07 000000626 INF: FPGA: Recv ZSGSRD 35820 17-03-18 03:48:07.684 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:48:07.684 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-18 03:48:07.684 -07 000000424 INF: FPGA: Recv ZPIEZORD 31610 17-03-18 03:48:07.694 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:48:07.694 -07 000000610 INF: Z Motor: Piezo is near 47.5 V (nominally 0 to 100 V), expect near 56.8 V, since DAC is at 5.681 V. Piezo Error = -9.3 V. 17-03-18 03:48:07.694 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.4 um, Read 10 ADC samples: Avg = 35820 (-169.6 uncal um), Error = 0.9 uncal um, Median = 35820 (-169.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35815 (-169.5 uncal um), Max = 35825 (-169.6 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um) 17-03-18 03:48:07.694 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35820, posNoise = 5, negNoise = 5 17-03-18 03:48:07.694 -07 000000610 INF: Z Motor: After move to -0.170428, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-18 03:48:07.694 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms) 17-03-18 03:48:07.694 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-18 03:48:07.694 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-18 03:48:07.694 -07 000000438 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-18 03:48:07.694 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-18 03:48:07.694 -07 000000590 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start. 17-03-18 03:48:07.694 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-18 03:48:07.694 -07 000000581 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start. 17-03-18 03:48:07.694 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074704) start. 17-03-18 03:48:07.694 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms. 17-03-18 03:48:07.694 -07 000000590 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start. 17-03-18 03:48:07.694 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms. 17-03-18 03:48:07.694 -07 000000581 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start. 17-03-18 03:48:07.694 -07 000000581 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms. 17-03-18 03:48:07.694 -07 000000581 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start. 17-03-18 03:48:07.694 -07 000000590 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms. 17-03-18 03:48:07.694 -07 000000590 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start. 17-03-18 03:48:07.714 -07 000000581 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms. 17-03-18 03:48:07.714 -07 000000581 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms. 17-03-18 03:48:07.714 -07 000000590 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms. 17-03-18 03:48:07.714 -07 000000590 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms. 17-03-18 03:48:07.714 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 411 411 198 198 37407 150\n [Camera] 17-03-18 03:48:07.914 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP turning red on 192 17-03-18 03:48:08.324 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 603 17-03-18 03:48:08.324 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 603 17-03-18 03:48:08.334 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-18 03:48:08.334 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 603 17-03-18 03:48:08.334 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 603 17-03-18 03:48:08.334 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-18 03:48:08.334 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-18 03:48:08.334 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2165554656, 0x0, 391868352) start. 17-03-18 03:48:08.334 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-18 03:48:08.334 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2200976920, 0x0, 418435064) start. 17-03-18 03:48:08.524 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37407 796 17-03-18 03:48:08.674 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP turning grn on 946 17-03-18 03:48:08.714 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2200976920, 0x0, 418435064) end. Duration was 374 ms. 17-03-18 03:48:08.714 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms. 17-03-18 03:48:08.714 -07 000000424 INF: Camera: CopyActivePixFullImage start. 17-03-18 03:48:08.714 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-18 03:48:08.714 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2165554656, 0x0, 391868352) end. Duration was 381 ms. 17-03-18 03:48:08.714 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms. 17-03-18 03:48:08.714 -07 000000501 INF: Camera: CopyActivePixFullImage start. 17-03-18 03:48:08.724 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-18 03:48:08.724 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 391 ms. 17-03-18 03:48:08.724 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms. 17-03-18 03:48:08.874 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1144 17-03-18 03:48:08.874 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1144 17-03-18 03:48:08.874 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-18 03:48:08.874 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1144 17-03-18 03:48:08.874 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-18 03:48:08.874 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1144 17-03-18 03:48:08.874 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) start. 17-03-18 03:48:08.874 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-18 03:48:08.874 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-18 03:48:08.874 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start. 17-03-18 03:48:09.064 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP 1338 17-03-18 03:48:09.064 -07 000000501 INF: FPGA: Recv CAMDBLSNAP 17-03-18 03:48:09.064 -07 000000610 INF: FPGA: 'CAMDBLSNAP 411 411 198 198 37407 150' command took 2 ms to send, 1333 ms to get response, and 1345 ms overall 17-03-18 03:48:09.064 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880 17-03-18 03:48:09.064 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 6 at Y-position 63.2236328125, Z-Position -0.170438630929012. ------ 17-03-18 03:48:09.064 -07 000000424 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.0626 mm, moving Z to -0.17690 mm 17-03-18 03:48:09.064 -07 000000424 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move 17-03-18 03:48:09.074 -07 000000606 INF: Y Motor: Entering MoveAbsStepped (target = 102500 steps, sync = True, waitForSettling = True) 17-03-18 03:48:09.074 -07 000000606 INF: Y Motor: Moving to 64.0626 mm, started at 63.2236 mm, delta = 0.8390 mm 17-03-18 03:48:09.074 -07 000000590 INF: Z Motor: Entering MoveAbsStepped (DAC = 38645, sync = True, waitForSettling = False) 17-03-18 03:48:09.074 -07 000000590 INF: Z Motor: Moving to -0.176905 mm, started at -0.170439 mm, distance = -6.47 um 17-03-18 03:48:09.084 -07 000000606 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 03:48:09.094 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-18 03:48:09.104 -07 000000590 INF: FPGA: Xmit ZDACW 38645\n [Z Motor] 17-03-18 03:48:09.274 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 404 ms. 17-03-18 03:48:09.274 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 404 ms. 17-03-18 03:48:09.274 -07 000000626 INF: Camera: CopyActivePixFullImage start. 17-03-18 03:48:09.274 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) end. Duration was 405 ms. 17-03-18 03:48:09.274 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 406 ms. 17-03-18 03:48:09.274 -07 000000444 INF: Camera: CopyActivePixFullImage start. 17-03-18 03:48:09.284 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-18 03:48:09.284 -07 000000444 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-18 03:48:09.284 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 413 ms. 17-03-18 03:48:09.294 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 416 ms. 17-03-18 03:48:09.304 -07 000000626 INF: FPGA: Recv YRDPOS 129482 17-03-18 03:48:09.304 -07 000000626 INF: FPGA: Recv FOCMRRCUR 17-03-18 03:48:09.304 -07 000000626 INF: FPGA: Recv ZDACW 17-03-18 03:48:09.304 -07 000000590 INF: FPGA: 'ZDACW 38645' command took 0 ms to send, 190 ms to get response, and 227 ms overall 17-03-18 03:48:09.304 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 200 ms to get response, and 230 ms overall 17-03-18 03:48:09.304 -07 000000606 INF: FPGA: 'YRDPOS' command took 0 ms to send, 210 ms to get response, and 227 ms overall 17-03-18 03:48:09.304 -07 000000606 INF: Y Motor: Encoder = 129482 = motor step 101157.8 = 63.2236 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 03:48:09.304 -07 000000606 INF: Y Motor: Last commanded position = 63.2326 mm (101172.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True 17-03-18 03:48:09.304 -07 000000606 INF: Y Motor: Moving 1342 steps-19 17-03-18 03:48:09.324 -07 000000590 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-18 03:48:09.324 -07 000000444 INF: FPGA: Recv ZDACR 38645 17-03-18 03:48:09.334 -07 000000501 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror] 17-03-18 03:48:09.334 -07 000000590 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall 17-03-18 03:48:09.334 -07 000000590 INF: Z Motor: MoveAbsStepped took 257 ms (did NOT wait for settling yet)) 17-03-18 03:48:09.344 -07 000000606 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor] 17-03-18 03:48:09.534 -07 000000444 INF: FPGA: Recv FOCMRRFOC 17-03-18 03:48:09.534 -07 000000501 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 231 ms overall 17-03-18 03:48:09.714 -07 000000444 INF: FPGA: Recv YMVTILE 17-03-18 03:48:09.714 -07 000000606 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 416 ms overall 17-03-18 03:48:09.764 -07 000000606 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 03:48:09.764 -07 000000626 INF: FPGA: Recv YRDPOS 131187 17-03-18 03:48:09.774 -07 000000606 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall 17-03-18 03:48:09.774 -07 000000606 INF: Y Motor: Encoder = 131187 = motor step 102489.8 = 64.0562 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 03:48:09.774 -07 000000606 INF: Y Motor: Position error before settling (table move) = -13 encoder counts (-0.006 mm) 17-03-18 03:48:09.774 -07 000000606 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 416 ms, distance = 0.839 mm, average velocity = 2.017 mm/sec 17-03-18 03:48:10.724 -07 000000606 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 03:48:10.724 -07 000000626 INF: FPGA: Recv YRDPOS 131188 17-03-18 03:48:10.734 -07 000000606 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-18 03:48:10.734 -07 000000606 INF: Y Motor: Encoder = 131188 = motor step 102490.6 = 64.0566 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 03:48:10.754 -07 000000606 INF: Y Motor: After move to 64.062607, error = -0.005966, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm 17-03-18 03:48:10.754 -07 000000606 INF: Y Motor: Position error after settling (table move) = -12 encoder counts (-0.006 mm), Delta during settling = 1 counts (0.000 mm) 17-03-18 03:48:10.754 -07 000000606 INF: Y Motor: Moved to 64.0566 after 1684 ms (table move) 17-03-18 03:48:10.764 -07 000000424 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176905 mm (DAC = 38645) 17-03-18 03:48:10.764 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:48:10.764 -07 000000501 INF: FPGA: Recv ZSGSRD 36833 17-03-18 03:48:10.774 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:48:10.774 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:48:10.774 -07 000000444 INF: FPGA: Recv ZSGSRD 36833 17-03-18 03:48:10.784 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:48:10.784 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:48:10.784 -07 000000444 INF: FPGA: Recv ZSGSRD 36828 17-03-18 03:48:10.794 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:48:10.794 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:48:10.794 -07 000000590 INF: FPGA: Recv ZSGSRD 36830 17-03-18 03:48:10.804 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:48:10.804 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:48:10.804 -07 000000606 INF: FPGA: Recv ZSGSRD 36834 17-03-18 03:48:10.814 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:48:10.814 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:48:10.814 -07 000000626 INF: FPGA: Recv ZSGSRD 36830 17-03-18 03:48:10.824 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:48:10.824 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:48:10.824 -07 000000501 INF: FPGA: Recv ZSGSRD 36825 17-03-18 03:48:10.834 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:48:10.834 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:48:10.834 -07 000000501 INF: FPGA: Recv ZSGSRD 36824 17-03-18 03:48:10.844 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:48:10.844 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:48:10.844 -07 000000626 INF: FPGA: Recv ZSGSRD 36831 17-03-18 03:48:10.854 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:48:10.854 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:48:10.854 -07 000000444 INF: FPGA: Recv ZSGSRD 36832 17-03-18 03:48:10.864 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:48:10.864 -07 000000424 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-18 03:48:10.864 -07 000000501 INF: FPGA: Recv ZPIEZORD 33002 17-03-18 03:48:10.874 -07 000000424 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:48:10.874 -07 000000424 INF: Z Motor: Piezo is near 50.5 V (nominally 0 to 100 V), expect near 59.0 V, since DAC is at 5.897 V. Piezo Error = -8.5 V. 17-03-18 03:48:10.874 -07 000000424 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.9 um, Read 10 ADC samples: Avg = 36830 (-176.0 uncal um), Error = 0.9 uncal um, Median = 36830 (-176.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 36824 (-176.0 uncal um), Max = 36834 (-176.1 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um) 17-03-18 03:48:10.874 -07 000000424 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36830, posNoise = 4, negNoise = 6 17-03-18 03:48:10.874 -07 000000424 INF: Z Motor: After move to -0.176905, error = -0.000022, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-18 03:48:10.874 -07 000000424 INF: Z Motor: Settle wait time = 1686 ms, measure time = 111 ms (allowed 150 ms), total time = 1797 ms 17-03-18 03:48:10.874 -07 000000424 INF: Z Motor: Waiting extra 39 ms after reading position to reach expected total of 150 ms 17-03-18 03:48:10.914 -07 000000424 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1840 ms 17-03-18 03:48:10.914 -07 000000424 INF: Y Motor: Restored settling times back to 3000 or 1100 ms 17-03-18 03:48:10.914 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-18 03:48:10.914 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-18 03:48:10.914 -07 000000444 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-18 03:48:10.914 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-18 03:48:10.914 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger start. 17-03-18 03:48:10.914 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-18 03:48:10.914 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms. 17-03-18 03:48:10.914 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start. 17-03-18 03:48:10.924 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms. 17-03-18 03:48:10.924 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start. 17-03-18 03:48:10.924 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms. 17-03-18 03:48:10.924 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms. 17-03-18 03:48:10.934 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera] 17-03-18 03:48:10.974 -07 000000606 INF: FPGA: Recv @CAMSNAP turning led on 40 17-03-18 03:48:11.274 -07 000000501 INF: FPGA: Recv @CAMSNAP img rdy 340 17-03-18 03:48:11.274 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340 17-03-18 03:48:11.274 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start. 17-03-18 03:48:11.274 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 648609776, 0x0, 559484976) start. 17-03-18 03:48:11.314 -07 000000424 INF: FPGA: Recv @CAMSNAP 380 17-03-18 03:48:11.314 -07 000000444 INF: FPGA: Recv CAMSNAP 17-03-18 03:48:11.314 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall 17-03-18 03:48:11.394 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 648609776, 0x0, 559484976) end. Duration was 117 ms. 17-03-18 03:48:11.394 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-18 03:48:11.394 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms. 17-03-18 03:48:11.394 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms. 17-03-18 03:48:11.414 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-18 03:48:11.414 -07 000000424 INF: Autofocus start 17-03-18 03:48:11.414 -07 000000424 INF: MeasureProfile start 17-03-18 03:48:11.414 -07 000000626 INF: FPGA: Recv FOCMRRCUR 17-03-18 03:48:11.424 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall 17-03-18 03:48:11.424 -07 000000501 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror] 17-03-18 03:48:11.424 -07 000000424 INF: MeasureProfile done 17-03-18 03:48:11.424 -07 000000424 INF: X=-80 Z correction [um]=-0.4885566 17-03-18 03:48:11.424 -07 000000424 INF: Autofocus finished 17-03-18 03:48:11.604 -07 000000444 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-18 03:48:11.604 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 116. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1683, R2=1752, Total=3435. Warn if over 250 bubbles per interval. 17-03-18 03:48:11.624 -07 000000444 INF: FPGA: Recv FOCMRRIMG 17-03-18 03:48:11.624 -07 000000501 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall 17-03-18 03:48:11.624 -07 000000610 INF: ------------ Scan Snapping tile 6 at Y-position 64.056640625, Z-position -0.176927085192191. ---------- 17-03-18 03:48:11.624 -07 000000610 INF: Cycle 117 Tile 6 Exposure Settings A 411 G 198 T 198 C 411 17-03-18 03:48:11.634 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37050, sync = True, waitForSettling = True) 17-03-18 03:48:11.634 -07 000000610 INF: Z Motor: Moving to -0.169604 mm, started at -0.176927 mm, distance = 7.32 um 17-03-18 03:48:11.634 -07 000000610 INF: FPGA: Xmit ZDACW 37050\n [Z Motor] 17-03-18 03:48:11.634 -07 000000590 INF: FPGA: Recv ZDACW 17-03-18 03:48:11.644 -07 000000610 INF: FPGA: 'ZDACW 37050' command took 0 ms to send, 0 ms to get response, and 8 ms overall 17-03-18 03:48:11.644 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-18 03:48:11.644 -07 000000626 INF: FPGA: Recv ZDACR 37050 17-03-18 03:48:11.654 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:48:11.654 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-18 03:48:11.684 -07 000000444 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 117, FrontChillerTemperature: 3.996267, 17-03-18 03:48:11.804 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:48:11.804 -07 000000501 INF: FPGA: Recv ZSGSRD 35687 17-03-18 03:48:11.814 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-18 03:48:11.814 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:48:11.814 -07 000000424 INF: FPGA: Recv ZSGSRD 35697 17-03-18 03:48:11.824 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:48:11.824 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:48:11.824 -07 000000606 INF: FPGA: Recv ZSGSRD 35689 17-03-18 03:48:11.834 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:48:11.834 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:48:11.834 -07 000000444 INF: FPGA: Recv ZSGSRD 35687 17-03-18 03:48:11.844 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:48:11.844 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:48:11.844 -07 000000474 INF: FPGA: Recv ZSGSRD 35692 17-03-18 03:48:11.854 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:48:11.854 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:48:11.854 -07 000000569 INF: FPGA: Recv ZSGSRD 35691 17-03-18 03:48:11.864 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:48:11.864 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:48:11.864 -07 000000606 INF: FPGA: Recv ZSGSRD 35698 17-03-18 03:48:11.874 -07 000000610 INF: FPGA: 'ZSGSRD' command took 2 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:48:11.874 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:48:11.874 -07 000000626 INF: FPGA: Recv ZSGSRD 35691 17-03-18 03:48:11.884 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:48:11.884 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:48:11.884 -07 000000444 INF: FPGA: Recv ZSGSRD 35690 17-03-18 03:48:11.894 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:48:11.894 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:48:11.894 -07 000000474 INF: FPGA: Recv ZSGSRD 35693 17-03-18 03:48:11.904 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:48:11.904 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-18 03:48:11.904 -07 000000606 INF: FPGA: Recv ZPIEZORD 31464 17-03-18 03:48:11.914 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:48:11.914 -07 000000610 INF: Z Motor: Piezo is near 47.2 V (nominally 0 to 100 V), expect near 56.5 V, since DAC is at 5.653 V. Piezo Error = -9.3 V. 17-03-18 03:48:11.914 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.6 um, Read 10 ADC samples: Avg = 35692 (-168.7 uncal um), Error = 0.9 uncal um, Median = 35691 (-168.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35687 (-168.7 uncal um), Max = 35698 (-168.8 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um) 17-03-18 03:48:11.914 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35692, posNoise = 6, negNoise = 5 17-03-18 03:48:11.914 -07 000000610 INF: Z Motor: After move to -0.169604, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-18 03:48:11.914 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms) 17-03-18 03:48:11.914 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-18 03:48:11.914 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-18 03:48:11.914 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-18 03:48:11.914 -07 000000474 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-18 03:48:11.914 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start. 17-03-18 03:48:11.914 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) start. 17-03-18 03:48:11.914 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start. 17-03-18 03:48:11.914 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-18 03:48:11.914 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms. 17-03-18 03:48:11.914 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start. 17-03-18 03:48:11.914 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-18 03:48:11.914 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start. 17-03-18 03:48:11.914 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms. 17-03-18 03:48:11.914 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start. 17-03-18 03:48:11.914 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms. 17-03-18 03:48:11.914 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start. 17-03-18 03:48:11.924 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms. 17-03-18 03:48:11.924 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms. 17-03-18 03:48:11.934 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms. 17-03-18 03:48:11.934 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms. 17-03-18 03:48:11.934 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 411 411 198 198 37227 150\n [Camera] 17-03-18 03:48:12.134 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning red on 192 17-03-18 03:48:12.544 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 603 17-03-18 03:48:12.544 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 603 17-03-18 03:48:12.544 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-18 03:48:12.544 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-18 03:48:12.544 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) start. 17-03-18 03:48:12.544 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 603 17-03-18 03:48:12.544 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 603 17-03-18 03:48:12.544 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-18 03:48:12.544 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-18 03:48:12.544 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) start. 17-03-18 03:48:12.734 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37227 796 17-03-18 03:48:12.884 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning grn on 946 17-03-18 03:48:12.944 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) end. Duration was 400 ms. 17-03-18 03:48:12.944 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms. 17-03-18 03:48:12.944 -07 000000501 INF: Camera: CopyActivePixFullImage start. 17-03-18 03:48:12.944 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) end. Duration was 400 ms. 17-03-18 03:48:12.944 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms. 17-03-18 03:48:12.944 -07 000000626 INF: Camera: CopyActivePixFullImage start. 17-03-18 03:48:12.954 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-18 03:48:12.954 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms. 17-03-18 03:48:12.954 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-18 03:48:12.954 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms. 17-03-18 03:48:13.084 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1144 17-03-18 03:48:13.084 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1144 17-03-18 03:48:13.084 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-18 03:48:13.084 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-18 03:48:13.084 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start. 17-03-18 03:48:13.084 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1144 17-03-18 03:48:13.084 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1144 17-03-18 03:48:13.084 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-18 03:48:13.084 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-18 03:48:13.084 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start. 17-03-18 03:48:13.274 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP 1336 17-03-18 03:48:13.274 -07 000000606 INF: FPGA: Recv CAMDBLSNAP 17-03-18 03:48:13.274 -07 000000610 INF: FPGA: 'CAMDBLSNAP 411 411 198 198 37227 150' command took 2 ms to send, 1337 ms to get response, and 1344 ms overall 17-03-18 03:48:13.274 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880 17-03-18 03:48:13.274 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 7 at Y-position 64.056640625, Z-Position -0.169616331774867. ------ 17-03-18 03:48:13.284 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-18 03:48:13.284 -07 000000501 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.8926 mm, moving Z to -0.17606 mm 17-03-18 03:48:13.284 -07 000000501 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move 17-03-18 03:48:13.284 -07 000000424 INF: Y Motor: Entering MoveAbsStepped (target = 103828 steps, sync = True, waitForSettling = True) 17-03-18 03:48:13.284 -07 000000424 INF: Y Motor: Moving to 64.8926 mm, started at 64.0566 mm, delta = 0.8360 mm 17-03-18 03:48:13.284 -07 000000606 INF: Z Motor: Entering MoveAbsStepped (DAC = 38461, sync = True, waitForSettling = False) 17-03-18 03:48:13.284 -07 000000606 INF: Z Motor: Moving to -0.176063 mm, started at -0.169616 mm, distance = -6.45 um 17-03-18 03:48:13.284 -07 000000444 INF: FPGA: Recv FOCMRRCUR 17-03-18 03:48:13.294 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall 17-03-18 03:48:13.294 -07 000000606 INF: FPGA: Xmit ZDACW 38461\n [Z Motor] 17-03-18 03:48:13.294 -07 000000444 INF: FPGA: Recv ZDACW 17-03-18 03:48:13.304 -07 000000606 INF: FPGA: 'ZDACW 38461' command took 0 ms to send, 0 ms to get response, and 11 ms overall 17-03-18 03:48:13.304 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 03:48:13.304 -07 000000444 INF: FPGA: Recv YRDPOS 131188 17-03-18 03:48:13.314 -07 000000569 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror] 17-03-18 03:48:13.314 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 21 ms overall 17-03-18 03:48:13.314 -07 000000424 INF: Y Motor: Encoder = 131188 = motor step 102490.6 = 64.0566 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 03:48:13.314 -07 000000424 INF: Y Motor: Last commanded position = 64.0626 mm (102500.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True 17-03-18 03:48:13.314 -07 000000424 INF: Y Motor: Moving 1338 steps-13 17-03-18 03:48:13.324 -07 000000606 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-18 03:48:13.324 -07 000000461 INF: FPGA: Recv ZDACR 38461 17-03-18 03:48:13.334 -07 000000424 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor] 17-03-18 03:48:13.334 -07 000000606 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall 17-03-18 03:48:13.334 -07 000000606 INF: Z Motor: MoveAbsStepped took 42 ms (did NOT wait for settling yet)) 17-03-18 03:48:13.484 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 393 ms. 17-03-18 03:48:13.484 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 393 ms. 17-03-18 03:48:13.484 -07 000000626 INF: Camera: CopyActivePixFullImage start. 17-03-18 03:48:13.484 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 399 ms. 17-03-18 03:48:13.484 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-18 03:48:13.484 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms. 17-03-18 03:48:13.484 -07 000000590 INF: Camera: CopyActivePixFullImage start. 17-03-18 03:48:13.494 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms. 17-03-18 03:48:13.494 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 406 ms. 17-03-18 03:48:13.494 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 403 ms. 17-03-18 03:48:13.514 -07 000000626 INF: FPGA: Recv FOCMRRFOC 17-03-18 03:48:13.514 -07 000000569 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall 17-03-18 03:48:13.704 -07 000000474 INF: FPGA: Recv YMVTILE 17-03-18 03:48:13.704 -07 000000424 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall 17-03-18 03:48:13.754 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 03:48:13.754 -07 000000590 INF: FPGA: Recv YRDPOS 132870 17-03-18 03:48:13.764 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall 17-03-18 03:48:13.764 -07 000000424 INF: Y Motor: Encoder = 132870 = motor step 103804.7 = 64.8779 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 03:48:13.764 -07 000000424 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm) 17-03-18 03:48:13.764 -07 000000424 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.836 mm, average velocity = 2.106 mm/sec 17-03-18 03:48:14.714 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 03:48:14.714 -07 000000569 INF: FPGA: Recv YRDPOS 132871 17-03-18 03:48:14.724 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-18 03:48:14.724 -07 000000424 INF: Y Motor: Encoder = 132871 = motor step 103805.5 = 64.8784 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 03:48:14.744 -07 000000424 INF: Y Motor: After move to 64.892609, error = -0.014191, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm 17-03-18 03:48:14.754 -07 000000424 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 1 counts (0.000 mm) 17-03-18 03:48:14.754 -07 000000424 INF: Y Motor: Moved to 64.8784 after 1462 ms (table move) 17-03-18 03:48:14.754 -07 000000501 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176063 mm (DAC = 38461) 17-03-18 03:48:14.754 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:48:14.754 -07 000000569 INF: FPGA: Recv ZSGSRD 36694 17-03-18 03:48:14.764 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall 17-03-18 03:48:14.764 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:48:14.764 -07 000000569 INF: FPGA: Recv ZSGSRD 36694 17-03-18 03:48:14.774 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:48:14.774 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:48:14.774 -07 000000569 INF: FPGA: Recv ZSGSRD 36699 17-03-18 03:48:14.784 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:48:14.784 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:48:14.784 -07 000000424 INF: FPGA: Recv ZSGSRD 36704 17-03-18 03:48:14.794 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:48:14.794 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:48:14.794 -07 000000424 INF: FPGA: Recv ZSGSRD 36697 17-03-18 03:48:14.804 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:48:14.804 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:48:14.804 -07 000000424 INF: FPGA: Recv ZSGSRD 36699 17-03-18 03:48:14.814 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:48:14.814 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:48:14.814 -07 000000590 INF: FPGA: Recv ZSGSRD 36697 17-03-18 03:48:14.824 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:48:14.824 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:48:14.824 -07 000000569 INF: FPGA: Recv ZSGSRD 36688 17-03-18 03:48:14.834 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:48:14.834 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:48:14.834 -07 000000626 INF: FPGA: Recv ZSGSRD 36695 17-03-18 03:48:14.844 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:48:14.844 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:48:14.844 -07 000000569 INF: FPGA: Recv ZSGSRD 36702 17-03-18 03:48:14.854 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:48:14.854 -07 000000501 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-18 03:48:14.854 -07 000000590 INF: FPGA: Recv ZPIEZORD 32841 17-03-18 03:48:14.864 -07 000000501 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:48:14.864 -07 000000501 INF: Z Motor: Piezo is near 50.2 V (nominally 0 to 100 V), expect near 58.7 V, since DAC is at 5.869 V. Piezo Error = -8.5 V. 17-03-18 03:48:14.864 -07 000000501 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.1 um, Read 10 ADC samples: Avg = 36697 (-175.2 uncal um), Error = 0.9 uncal um, Median = 36697 (-175.2 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 36688 (-175.1 uncal um), Max = 36704 (-175.2 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um) 17-03-18 03:48:14.864 -07 000000501 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36697, posNoise = 7, negNoise = 9 17-03-18 03:48:14.864 -07 000000501 INF: Z Motor: After move to -0.176063, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-18 03:48:14.864 -07 000000501 INF: Z Motor: Settle wait time = 1466 ms, measure time = 106 ms (allowed 150 ms), total time = 1572 ms 17-03-18 03:48:14.864 -07 000000501 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms 17-03-18 03:48:14.914 -07 000000501 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1624 ms 17-03-18 03:48:14.914 -07 000000501 INF: Y Motor: Restored settling times back to 3000 or 1100 ms 17-03-18 03:48:14.914 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-18 03:48:14.914 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-18 03:48:14.914 -07 000000590 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-18 03:48:14.914 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger start. 17-03-18 03:48:14.914 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-18 03:48:14.914 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-18 03:48:14.924 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-18 03:48:14.924 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start. 17-03-18 03:48:14.924 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms. 17-03-18 03:48:14.924 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start. 17-03-18 03:48:14.924 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms. 17-03-18 03:48:14.924 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms. 17-03-18 03:48:14.934 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera] 17-03-18 03:48:14.974 -07 000000590 INF: FPGA: Recv @CAMSNAP turning led on 40 17-03-18 03:48:15.274 -07 000000626 INF: FPGA: Recv @CAMSNAP img rdy 340 17-03-18 03:48:15.274 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340 17-03-18 03:48:15.274 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start. 17-03-18 03:48:15.274 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 677954600, 0x0, 559484976) start. 17-03-18 03:48:15.314 -07 000000424 INF: FPGA: Recv @CAMSNAP 380 17-03-18 03:48:15.314 -07 000000501 INF: FPGA: Recv CAMSNAP 17-03-18 03:48:15.314 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 384 ms overall 17-03-18 03:48:15.394 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 677954600, 0x0, 559484976) end. Duration was 116 ms. 17-03-18 03:48:15.394 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-18 03:48:15.394 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms. 17-03-18 03:48:15.394 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms. 17-03-18 03:48:15.414 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-18 03:48:15.414 -07 000000626 INF: Autofocus start 17-03-18 03:48:15.414 -07 000000626 INF: MeasureProfile start 17-03-18 03:48:15.414 -07 000000581 INF: FPGA: Recv FOCMRRCUR 17-03-18 03:48:15.424 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall 17-03-18 03:48:15.424 -07 000000501 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror] 17-03-18 03:48:15.424 -07 000000626 INF: MeasureProfile done 17-03-18 03:48:15.424 -07 000000626 INF: X=0 Z correction [um]=-0.0713522 17-03-18 03:48:15.424 -07 000000626 INF: Autofocus finished 17-03-18 03:48:15.624 -07 000000590 INF: FPGA: Recv FOCMRRIMG 17-03-18 03:48:15.624 -07 000000501 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall 17-03-18 03:48:15.624 -07 000000610 INF: ------------ Scan Snapping tile 7 at Y-position 64.87841796875, Z-position -0.176072664977337. ---------- 17-03-18 03:48:15.624 -07 000000610 INF: Cycle 117 Tile 7 Exposure Settings A 411 G 198 T 198 C 411 17-03-18 03:48:15.634 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36958, sync = True, waitForSettling = True) 17-03-18 03:48:15.634 -07 000000610 INF: Z Motor: Moving to -0.169183 mm, started at -0.176073 mm, distance = 6.89 um 17-03-18 03:48:15.634 -07 000000610 INF: FPGA: Xmit ZDACW 36958\n [Z Motor] 17-03-18 03:48:15.634 -07 000000581 INF: FPGA: Recv ZDACW 17-03-18 03:48:15.644 -07 000000610 INF: FPGA: 'ZDACW 36958' command took 0 ms to send, 0 ms to get response, and 7 ms overall 17-03-18 03:48:15.644 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-18 03:48:15.644 -07 000000569 INF: FPGA: Recv ZDACR 36958 17-03-18 03:48:15.654 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:48:15.654 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-18 03:48:15.804 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:48:15.804 -07 000000581 INF: FPGA: Recv ZSGSRD 35623 17-03-18 03:48:15.814 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-18 03:48:15.814 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:48:15.814 -07 000000424 INF: FPGA: Recv ZSGSRD 35626 17-03-18 03:48:15.824 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:48:15.824 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:48:15.824 -07 000000581 INF: FPGA: Recv ZSGSRD 35626 17-03-18 03:48:15.834 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:48:15.834 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:48:15.834 -07 000000626 INF: FPGA: Recv ZSGSRD 35626 17-03-18 03:48:15.844 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:48:15.844 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:48:15.844 -07 000000581 INF: FPGA: Recv ZSGSRD 35628 17-03-18 03:48:15.854 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:48:15.854 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:48:15.854 -07 000000626 INF: FPGA: Recv ZSGSRD 35621 17-03-18 03:48:15.864 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:48:15.864 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:48:15.864 -07 000000590 INF: FPGA: Recv ZSGSRD 35629 17-03-18 03:48:15.874 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:48:15.874 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:48:15.874 -07 000000581 INF: FPGA: Recv ZSGSRD 35626 17-03-18 03:48:15.884 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:48:15.884 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:48:15.884 -07 000000590 INF: FPGA: Recv ZSGSRD 35626 17-03-18 03:48:15.894 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:48:15.894 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:48:15.894 -07 000000581 INF: FPGA: Recv ZSGSRD 35629 17-03-18 03:48:15.904 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:48:15.904 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-18 03:48:15.904 -07 000000590 INF: FPGA: Recv ZPIEZORD 31379 17-03-18 03:48:15.914 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:48:15.914 -07 000000610 INF: Z Motor: Piezo is near 47.0 V (nominally 0 to 100 V), expect near 56.4 V, since DAC is at 5.639 V. Piezo Error = -9.4 V. 17-03-18 03:48:15.914 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.2 um, Read 10 ADC samples: Avg = 35626 (-168.3 uncal um), Error = 0.9 uncal um, Median = 35626 (-168.3 uncal um), StdDev = 2 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35621 (-168.3 uncal um), Max = 35629 (-168.3 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um) 17-03-18 03:48:15.914 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35626, posNoise = 3, negNoise = 5 17-03-18 03:48:15.914 -07 000000610 INF: Z Motor: After move to -0.169183, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-18 03:48:15.914 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms) 17-03-18 03:48:15.914 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-18 03:48:15.914 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-18 03:48:15.914 -07 000000590 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-18 03:48:15.914 -07 000000581 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-18 03:48:15.914 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start. 17-03-18 03:48:15.914 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-18 03:48:15.914 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start. 17-03-18 03:48:15.914 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) start. 17-03-18 03:48:15.914 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms. 17-03-18 03:48:15.914 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start. 17-03-18 03:48:15.924 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms. 17-03-18 03:48:15.924 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start. 17-03-18 03:48:15.924 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms. 17-03-18 03:48:15.924 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start. 17-03-18 03:48:15.924 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms. 17-03-18 03:48:15.924 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start. 17-03-18 03:48:15.934 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms. 17-03-18 03:48:15.934 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms. 17-03-18 03:48:15.934 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms. 17-03-18 03:48:15.934 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms. 17-03-18 03:48:15.934 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 411 411 198 198 37134 150\n [Camera] 17-03-18 03:48:16.134 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning red on 192 17-03-18 03:48:16.544 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 603 17-03-18 03:48:16.544 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 603 17-03-18 03:48:16.554 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-18 03:48:16.554 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-18 03:48:16.554 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start. 17-03-18 03:48:16.554 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 603 17-03-18 03:48:16.554 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 603 17-03-18 03:48:16.554 -07 000000581 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-18 03:48:16.554 -07 000000581 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-18 03:48:16.554 -07 000000581 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start. 17-03-18 03:48:16.604 -07 000000382 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-18 03:48:16.604 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 116. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1683, R2=1752, Total=3435. Warn if over 250 bubbles per interval. 17-03-18 03:48:16.744 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37134 796 17-03-18 03:48:16.894 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP turning grn on 946 17-03-18 03:48:16.944 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 398 ms. 17-03-18 03:48:16.944 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms. 17-03-18 03:48:16.944 -07 000000590 INF: Camera: CopyActivePixFullImage start. 17-03-18 03:48:16.954 -07 000000581 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 394 ms. 17-03-18 03:48:16.954 -07 000000581 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms. 17-03-18 03:48:16.954 -07 000000581 INF: Camera: CopyActivePixFullImage start. 17-03-18 03:48:16.954 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-18 03:48:16.954 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms. 17-03-18 03:48:16.954 -07 000000581 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-18 03:48:16.964 -07 000000581 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 406 ms. 17-03-18 03:48:17.044 -07 000000569 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 117, FrontChillerTemperature: 4.031682, 17-03-18 03:48:17.094 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1144 17-03-18 03:48:17.094 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1144 17-03-18 03:48:17.094 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-18 03:48:17.094 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-18 03:48:17.094 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) start. 17-03-18 03:48:17.094 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1144 17-03-18 03:48:17.094 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1144 17-03-18 03:48:17.094 -07 000000444 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-18 03:48:17.094 -07 000000444 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-18 03:48:17.094 -07 000000444 INF: Camera: sBCa_ReadImage(785074704, 2486767776, 0x0, 418435064) start. 17-03-18 03:48:17.284 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP 1336 17-03-18 03:48:17.284 -07 000000474 INF: FPGA: Recv CAMDBLSNAP 17-03-18 03:48:17.284 -07 000000610 INF: FPGA: 'CAMDBLSNAP 411 411 198 198 37134 150' command took 2 ms to send, 1332 ms to get response, and 1344 ms overall 17-03-18 03:48:17.284 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880 17-03-18 03:48:17.284 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 8 at Y-position 64.87841796875, Z-Position -0.169192333773511. ------ 17-03-18 03:48:17.284 -07 000000581 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-18 03:48:17.284 -07 000000569 INF: Y Motor: MoveYZ optimized starting. Moving Y to 65.7226 mm, moving Z to -0.17562 mm 17-03-18 03:48:17.284 -07 000000569 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move 17-03-18 03:48:17.294 -07 000000590 INF: FPGA: Recv FOCMRRCUR 17-03-18 03:48:17.294 -07 000000581 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall 17-03-18 03:48:17.294 -07 000000626 INF: Y Motor: Entering MoveAbsStepped (target = 105156 steps, sync = True, waitForSettling = True) 17-03-18 03:48:17.294 -07 000000626 INF: Y Motor: Moving to 65.7226 mm, started at 64.8784 mm, delta = 0.8442 mm 17-03-18 03:48:17.294 -07 000000581 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror] 17-03-18 03:48:17.294 -07 000000424 INF: Z Motor: Entering MoveAbsStepped (DAC = 38365, sync = True, waitForSettling = False) 17-03-18 03:48:17.294 -07 000000424 INF: Z Motor: Moving to -0.175624 mm, started at -0.169192 mm, distance = -6.43 um 17-03-18 03:48:17.304 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 03:48:17.304 -07 000000438 INF: FPGA: Recv YRDPOS 132871 17-03-18 03:48:17.314 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 17 ms overall 17-03-18 03:48:17.314 -07 000000626 INF: Y Motor: Encoder = 132871 = motor step 103805.5 = 64.8784 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 03:48:17.314 -07 000000626 INF: Y Motor: Last commanded position = 64.8926 mm (103828.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True 17-03-18 03:48:17.314 -07 000000626 INF: Y Motor: Moving 1351 steps-30 17-03-18 03:48:17.314 -07 000000424 INF: FPGA: Xmit ZDACW 38365\n [Z Motor] 17-03-18 03:48:17.314 -07 000000590 INF: FPGA: Recv ZDACW 17-03-18 03:48:17.324 -07 000000424 INF: FPGA: 'ZDACW 38365' command took 1 ms to send, 0 ms to get response, and 27 ms overall 17-03-18 03:48:17.324 -07 000000424 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-18 03:48:17.324 -07 000000438 INF: FPGA: Recv ZDACR 38365 17-03-18 03:48:17.334 -07 000000424 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:48:17.334 -07 000000424 INF: Z Motor: MoveAbsStepped took 37 ms (did NOT wait for settling yet)) 17-03-18 03:48:17.334 -07 000000626 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor] 17-03-18 03:48:17.494 -07 000000438 INF: FPGA: Recv FOCMRRFOC 17-03-18 03:48:17.494 -07 000000581 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 195 ms to get response, and 202 ms overall 17-03-18 03:48:17.494 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) end. Duration was 406 ms. 17-03-18 03:48:17.494 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 406 ms. 17-03-18 03:48:17.494 -07 000000382 INF: Camera: CopyActivePixFullImage start. 17-03-18 03:48:17.494 -07 000000444 INF: Camera: sBCa_ReadImage(785074704, 2486767776, 0x0, 418435064) end. Duration was 404 ms. 17-03-18 03:48:17.494 -07 000000444 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 405 ms. 17-03-18 03:48:17.494 -07 000000444 INF: Camera: CopyActivePixFullImage start. 17-03-18 03:48:17.504 -07 000000444 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-18 03:48:17.504 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms. 17-03-18 03:48:17.504 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 414 ms. 17-03-18 03:48:17.514 -07 000000444 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 417 ms. 17-03-18 03:48:17.704 -07 000000438 INF: FPGA: Recv YMVTILE 17-03-18 03:48:17.704 -07 000000626 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall 17-03-18 03:48:17.754 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 03:48:17.754 -07 000000461 INF: FPGA: Recv YRDPOS 134581 17-03-18 03:48:17.764 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall 17-03-18 03:48:17.764 -07 000000626 INF: Y Motor: Encoder = 134581 = motor step 105141.4 = 65.7134 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 03:48:17.764 -07 000000626 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm) 17-03-18 03:48:17.764 -07 000000626 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.844 mm, average velocity = 2.121 mm/sec 17-03-18 03:48:18.714 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 03:48:18.714 -07 000000461 INF: FPGA: Recv YRDPOS 134581 17-03-18 03:48:18.724 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-18 03:48:18.724 -07 000000626 INF: Y Motor: Encoder = 134581 = motor step 105141.4 = 65.7134 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 03:48:18.754 -07 000000626 INF: Y Motor: After move to 65.722610, error = -0.009232, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm 17-03-18 03:48:18.754 -07 000000626 INF: Y Motor: Position error after settling (table move) = -19 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm) 17-03-18 03:48:18.754 -07 000000626 INF: Y Motor: Moved to 65.7134 after 1464 ms (table move) 17-03-18 03:48:18.764 -07 000000569 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175624 mm (DAC = 38365) 17-03-18 03:48:18.764 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:48:18.764 -07 000000461 INF: FPGA: Recv ZSGSRD 36621 17-03-18 03:48:18.774 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:48:18.774 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:48:18.774 -07 000000424 INF: FPGA: Recv ZSGSRD 36629 17-03-18 03:48:18.784 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:48:18.784 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:48:18.784 -07 000000461 INF: FPGA: Recv ZSGSRD 36628 17-03-18 03:48:18.794 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:48:18.794 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:48:18.794 -07 000000626 INF: FPGA: Recv ZSGSRD 36624 17-03-18 03:48:18.804 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:48:18.804 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:48:18.804 -07 000000590 INF: FPGA: Recv ZSGSRD 36632 17-03-18 03:48:18.814 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:48:18.814 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:48:18.814 -07 000000461 INF: FPGA: Recv ZSGSRD 36631 17-03-18 03:48:18.824 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:48:18.824 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:48:18.824 -07 000000626 INF: FPGA: Recv ZSGSRD 36622 17-03-18 03:48:18.834 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:48:18.834 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:48:18.834 -07 000000461 INF: FPGA: Recv ZSGSRD 36631 17-03-18 03:48:18.844 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:48:18.844 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:48:18.844 -07 000000424 INF: FPGA: Recv ZSGSRD 36633 17-03-18 03:48:18.854 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:48:18.854 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:48:18.854 -07 000000461 INF: FPGA: Recv ZSGSRD 36635 17-03-18 03:48:18.864 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:48:18.864 -07 000000569 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-18 03:48:18.864 -07 000000424 INF: FPGA: Recv ZPIEZORD 32706 17-03-18 03:48:18.874 -07 000000569 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:48:18.874 -07 000000569 INF: Z Motor: Piezo is near 49.9 V (nominally 0 to 100 V), expect near 58.5 V, since DAC is at 5.854 V. Piezo Error = -8.7 V. 17-03-18 03:48:18.874 -07 000000569 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.6 um, Read 10 ADC samples: Avg = 36629 (-174.7 uncal um), Error = 0.9 uncal um, Median = 36630 (-174.8 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 36621 (-174.7 uncal um), Max = 36635 (-174.8 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um) 17-03-18 03:48:18.874 -07 000000569 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36629, posNoise = 6, negNoise = 8 17-03-18 03:48:18.874 -07 000000569 INF: Z Motor: After move to -0.175624, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-18 03:48:18.874 -07 000000569 INF: Z Motor: Settle wait time = 1467 ms, measure time = 111 ms (allowed 150 ms), total time = 1578 ms 17-03-18 03:48:18.874 -07 000000569 INF: Z Motor: Waiting extra 39 ms after reading position to reach expected total of 150 ms 17-03-18 03:48:18.914 -07 000000569 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1621 ms 17-03-18 03:48:18.914 -07 000000569 INF: Y Motor: Restored settling times back to 3000 or 1100 ms 17-03-18 03:48:18.914 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-18 03:48:18.914 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-18 03:48:18.924 -07 000000590 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-18 03:48:18.924 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-18 03:48:18.924 -07 000000461 INF: Disarm and arm camera sensor 0: ROITrigger start. 17-03-18 03:48:18.924 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-18 03:48:18.924 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms. 17-03-18 03:48:18.924 -07 000000461 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start. 17-03-18 03:48:18.924 -07 000000461 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms. 17-03-18 03:48:18.924 -07 000000461 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start. 17-03-18 03:48:18.934 -07 000000461 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms. 17-03-18 03:48:18.934 -07 000000461 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms. 17-03-18 03:48:18.934 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera] 17-03-18 03:48:18.984 -07 000000424 INF: FPGA: Recv @CAMSNAP turning led on 40 17-03-18 03:48:19.284 -07 000000626 INF: FPGA: Recv @CAMSNAP img rdy 340 17-03-18 03:48:19.284 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340 17-03-18 03:48:19.284 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start. 17-03-18 03:48:19.284 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2404847376, 0x0, 559484976) start. 17-03-18 03:48:19.324 -07 000000569 INF: FPGA: Recv @CAMSNAP 380 17-03-18 03:48:19.324 -07 000000424 INF: FPGA: Recv CAMSNAP 17-03-18 03:48:19.324 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 381 ms to get response, and 384 ms overall 17-03-18 03:48:19.394 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2404847376, 0x0, 559484976) end. Duration was 115 ms. 17-03-18 03:48:19.394 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-18 03:48:19.404 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms. 17-03-18 03:48:19.404 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms. 17-03-18 03:48:19.424 -07 000000461 INF: Autofocus start 17-03-18 03:48:19.424 -07 000000461 INF: MeasureProfile start 17-03-18 03:48:19.424 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-18 03:48:19.424 -07 000000590 INF: FPGA: Recv FOCMRRCUR 17-03-18 03:48:19.434 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall 17-03-18 03:48:19.434 -07 000000626 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror] 17-03-18 03:48:19.434 -07 000000461 INF: MeasureProfile done 17-03-18 03:48:19.434 -07 000000461 INF: X=64 Z correction [um]=0.2557664 17-03-18 03:48:19.434 -07 000000461 INF: Autofocus finished 17-03-18 03:48:19.634 -07 000000424 INF: FPGA: Recv FOCMRRIMG 17-03-18 03:48:19.634 -07 000000626 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall 17-03-18 03:48:19.634 -07 000000610 INF: ------------ Scan Snapping tile 8 at Y-position 65.71337890625, Z-position -0.175635818551697. ---------- 17-03-18 03:48:19.634 -07 000000610 INF: Cycle 117 Tile 8 Exposure Settings A 411 G 198 T 198 C 411 17-03-18 03:48:19.644 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36933, sync = True, waitForSettling = True) 17-03-18 03:48:19.644 -07 000000610 INF: Z Motor: Moving to -0.169068 mm, started at -0.175636 mm, distance = 6.57 um 17-03-18 03:48:19.644 -07 000000610 INF: FPGA: Xmit ZDACW 36933\n [Z Motor] 17-03-18 03:48:19.644 -07 000000590 INF: FPGA: Recv ZDACW 17-03-18 03:48:19.654 -07 000000610 INF: FPGA: 'ZDACW 36933' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:48:19.654 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-18 03:48:19.654 -07 000000424 INF: FPGA: Recv ZDACR 36933 17-03-18 03:48:19.664 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:48:19.664 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-18 03:48:19.814 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:48:19.814 -07 000000626 INF: FPGA: Recv ZSGSRD 35614 17-03-18 03:48:19.824 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:48:19.824 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:48:19.824 -07 000000424 INF: FPGA: Recv ZSGSRD 35614 17-03-18 03:48:19.834 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:48:19.834 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:48:19.834 -07 000000626 INF: FPGA: Recv ZSGSRD 35605 17-03-18 03:48:19.844 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:48:19.844 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:48:19.844 -07 000000590 INF: FPGA: Recv ZSGSRD 35605 17-03-18 03:48:19.854 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:48:19.854 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:48:19.854 -07 000000590 INF: FPGA: Recv ZSGSRD 35611 17-03-18 03:48:19.864 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:48:19.864 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:48:19.864 -07 000000590 INF: FPGA: Recv ZSGSRD 35603 17-03-18 03:48:19.874 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:48:19.874 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:48:19.874 -07 000000626 INF: FPGA: Recv ZSGSRD 35604 17-03-18 03:48:19.884 -07 000000610 INF: FPGA: 'ZSGSRD' command took 2 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:48:19.884 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:48:19.884 -07 000000569 INF: FPGA: Recv ZSGSRD 35606 17-03-18 03:48:19.894 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:48:19.894 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:48:19.894 -07 000000590 INF: FPGA: Recv ZSGSRD 35609 17-03-18 03:48:19.904 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:48:19.904 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:48:19.904 -07 000000424 INF: FPGA: Recv ZSGSRD 35606 17-03-18 03:48:19.914 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:48:19.914 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-18 03:48:19.914 -07 000000579 INF: FPGA: Recv ZPIEZORD 31337 17-03-18 03:48:19.924 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:48:19.924 -07 000000610 INF: Z Motor: Piezo is near 46.9 V (nominally 0 to 100 V), expect near 56.4 V, since DAC is at 5.636 V. Piezo Error = -9.4 V. 17-03-18 03:48:19.924 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.1 um, Read 10 ADC samples: Avg = 35608 (-168.2 uncal um), Error = 0.9 uncal um, Median = 35606 (-168.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35603 (-168.2 uncal um), Max = 35614 (-168.2 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um) 17-03-18 03:48:19.924 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35608, posNoise = 6, negNoise = 5 17-03-18 03:48:19.924 -07 000000610 INF: Z Motor: After move to -0.169068, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-18 03:48:19.924 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms) 17-03-18 03:48:19.924 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-18 03:48:19.924 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-18 03:48:19.924 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-18 03:48:19.924 -07 000000461 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-18 03:48:19.924 -07 000000579 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start. 17-03-18 03:48:19.924 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-18 03:48:19.924 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start. 17-03-18 03:48:19.924 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) start. 17-03-18 03:48:19.924 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms. 17-03-18 03:48:19.924 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start. 17-03-18 03:48:19.924 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms. 17-03-18 03:48:19.924 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start. 17-03-18 03:48:19.934 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms. 17-03-18 03:48:19.934 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start. 17-03-18 03:48:19.934 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms. 17-03-18 03:48:19.934 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start. 17-03-18 03:48:19.944 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms. 17-03-18 03:48:19.944 -07 000000579 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms. 17-03-18 03:48:19.944 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms. 17-03-18 03:48:19.944 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms. 17-03-18 03:48:19.944 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 411 411 198 198 37110 150\n [Camera] 17-03-18 03:48:20.144 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP turning red on 192 17-03-18 03:48:20.554 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 603 17-03-18 03:48:20.554 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 603 17-03-18 03:48:20.554 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-18 03:48:20.554 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-18 03:48:20.554 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) start. 17-03-18 03:48:20.554 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 603 17-03-18 03:48:20.554 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 603 17-03-18 03:48:20.564 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-18 03:48:20.564 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-18 03:48:20.564 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) start. 17-03-18 03:48:20.744 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37110 796 17-03-18 03:48:20.894 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP turning grn on 946 17-03-18 03:48:20.954 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) end. Duration was 392 ms. 17-03-18 03:48:20.954 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 392 ms. 17-03-18 03:48:20.954 -07 000000626 INF: Camera: CopyActivePixFullImage start. 17-03-18 03:48:20.954 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) end. Duration was 391 ms. 17-03-18 03:48:20.954 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 391 ms. 17-03-18 03:48:20.954 -07 000000579 INF: Camera: CopyActivePixFullImage start. 17-03-18 03:48:20.954 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-18 03:48:20.954 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 396 ms. 17-03-18 03:48:20.954 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-18 03:48:20.964 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 402 ms. 17-03-18 03:48:21.094 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1144 17-03-18 03:48:21.094 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1144 17-03-18 03:48:21.094 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-18 03:48:21.094 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-18 03:48:21.094 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 2620985504, 0x0, 391868352) start. 17-03-18 03:48:21.104 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1144 17-03-18 03:48:21.104 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1144 17-03-18 03:48:21.104 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-18 03:48:21.104 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-18 03:48:21.104 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2684358704, 0x0, 418435064) start. 17-03-18 03:48:21.284 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP 1337 17-03-18 03:48:21.284 -07 000000501 INF: FPGA: Recv CAMDBLSNAP 17-03-18 03:48:21.284 -07 000000610 INF: FPGA: 'CAMDBLSNAP 411 411 198 198 37110 150' command took 2 ms to send, 1339 ms to get response, and 1344 ms overall 17-03-18 03:48:21.294 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880 17-03-18 03:48:21.294 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 9 at Y-position 65.71337890625, Z-Position -0.169076697954959. ------ 17-03-18 03:48:21.294 -07 000000590 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-18 03:48:21.294 -07 000000424 INF: Y Motor: MoveYZ optimized starting. Moving Y to 66.5526 mm, moving Z to -0.17555 mm 17-03-18 03:48:21.294 -07 000000424 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move 17-03-18 03:48:21.294 -07 000000474 INF: Y Motor: Entering MoveAbsStepped (target = 106484 steps, sync = True, waitForSettling = True) 17-03-18 03:48:21.294 -07 000000474 INF: Y Motor: Moving to 66.5526 mm, started at 65.7134 mm, delta = 0.8392 mm 17-03-18 03:48:21.294 -07 000000569 INF: Z Motor: Entering MoveAbsStepped (DAC = 38350, sync = True, waitForSettling = False) 17-03-18 03:48:21.294 -07 000000569 INF: Z Motor: Moving to -0.175555 mm, started at -0.169077 mm, distance = -6.48 um 17-03-18 03:48:21.294 -07 000000382 INF: FPGA: Recv FOCMRRCUR 17-03-18 03:48:21.304 -07 000000590 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall 17-03-18 03:48:21.304 -07 000000474 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 03:48:21.304 -07 000000382 INF: FPGA: Recv YRDPOS 134581 17-03-18 03:48:21.314 -07 000000474 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 11 ms overall 17-03-18 03:48:21.314 -07 000000474 INF: Y Motor: Encoder = 134581 = motor step 105141.4 = 65.7134 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 03:48:21.314 -07 000000474 INF: Y Motor: Last commanded position = 65.7226 mm (105156.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True 17-03-18 03:48:21.314 -07 000000474 INF: Y Motor: Moving 1343 steps-19 17-03-18 03:48:21.314 -07 000000590 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror] 17-03-18 03:48:21.324 -07 000000569 INF: FPGA: Xmit ZDACW 38350\n [Z Motor] 17-03-18 03:48:21.324 -07 000000461 INF: FPGA: Recv ZDACW 17-03-18 03:48:21.334 -07 000000474 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor] 17-03-18 03:48:21.334 -07 000000569 INF: FPGA: 'ZDACW 38350' command took 0 ms to send, 0 ms to get response, and 30 ms overall 17-03-18 03:48:21.344 -07 000000569 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-18 03:48:21.344 -07 000000501 INF: FPGA: Recv ZDACR 38350 17-03-18 03:48:21.354 -07 000000569 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall 17-03-18 03:48:21.354 -07 000000569 INF: Z Motor: MoveAbsStepped took 51 ms (did NOT wait for settling yet)) 17-03-18 03:48:21.504 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 2620985504, 0x0, 391868352) end. Duration was 401 ms. 17-03-18 03:48:21.504 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms. 17-03-18 03:48:21.504 -07 000000579 INF: Camera: CopyActivePixFullImage start. 17-03-18 03:48:21.504 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2684358704, 0x0, 418435064) end. Duration was 401 ms. 17-03-18 03:48:21.504 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms. 17-03-18 03:48:21.504 -07 000000626 INF: Camera: CopyActivePixFullImage start. 17-03-18 03:48:21.504 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-18 03:48:21.514 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 9 ms. 17-03-18 03:48:21.514 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 412 ms. 17-03-18 03:48:21.514 -07 000000569 INF: FPGA: Recv FOCMRRFOC 17-03-18 03:48:21.514 -07 000000590 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 193 ms to get response, and 213 ms overall 17-03-18 03:48:21.514 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 415 ms. 17-03-18 03:48:21.604 -07 000000444 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-18 03:48:21.604 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 116. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1683, R2=1752, Total=3435. Warn if over 250 bubbles per interval. 17-03-18 03:48:21.704 -07 000000581 INF: FPGA: Recv YMVTILE 17-03-18 03:48:21.704 -07 000000474 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall 17-03-18 03:48:21.754 -07 000000474 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 03:48:21.754 -07 000000461 INF: FPGA: Recv YRDPOS 136271 17-03-18 03:48:21.764 -07 000000474 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall 17-03-18 03:48:21.764 -07 000000474 INF: Y Motor: Encoder = 136271 = motor step 106461.7 = 66.5386 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 03:48:21.764 -07 000000474 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm) 17-03-18 03:48:21.764 -07 000000474 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.839 mm, average velocity = 2.114 mm/sec 17-03-18 03:48:22.404 -07 000000461 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 117, FrontChillerTemperature: 3.996267, 17-03-18 03:48:22.714 -07 000000474 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 03:48:22.714 -07 000000461 INF: FPGA: Recv YRDPOS 136271 17-03-18 03:48:22.724 -07 000000474 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-18 03:48:22.724 -07 000000474 INF: Y Motor: Encoder = 136271 = motor step 106461.7 = 66.5386 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 03:48:22.754 -07 000000474 INF: Y Motor: After move to 66.552605, error = -0.014030, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm 17-03-18 03:48:22.754 -07 000000474 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm) 17-03-18 03:48:22.754 -07 000000474 INF: Y Motor: Moved to 66.5386 after 1452 ms (table move) 17-03-18 03:48:22.754 -07 000000424 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175555 mm (DAC = 38350) 17-03-18 03:48:22.754 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:48:22.754 -07 000000569 INF: FPGA: Recv ZSGSRD 36624 17-03-18 03:48:22.764 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall 17-03-18 03:48:22.764 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:48:22.764 -07 000000461 INF: FPGA: Recv ZSGSRD 36613 17-03-18 03:48:22.774 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:48:22.774 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:48:22.774 -07 000000474 INF: FPGA: Recv ZSGSRD 36619 17-03-18 03:48:22.784 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:48:22.784 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:48:22.784 -07 000000461 INF: FPGA: Recv ZSGSRD 36623 17-03-18 03:48:22.794 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:48:22.794 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:48:22.794 -07 000000461 INF: FPGA: Recv ZSGSRD 36619 17-03-18 03:48:22.804 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:48:22.804 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:48:22.804 -07 000000474 INF: FPGA: Recv ZSGSRD 36612 17-03-18 03:48:22.814 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:48:22.814 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:48:22.814 -07 000000461 INF: FPGA: Recv ZSGSRD 36614 17-03-18 03:48:22.824 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:48:22.824 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:48:22.824 -07 000000569 INF: FPGA: Recv ZSGSRD 36609 17-03-18 03:48:22.834 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:48:22.834 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:48:22.834 -07 000000569 INF: FPGA: Recv ZSGSRD 36612 17-03-18 03:48:22.844 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:48:22.844 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:48:22.844 -07 000000474 INF: FPGA: Recv ZSGSRD 36629 17-03-18 03:48:22.854 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:48:22.854 -07 000000424 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-18 03:48:22.854 -07 000000569 INF: FPGA: Recv ZPIEZORD 32723 17-03-18 03:48:22.864 -07 000000424 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:48:22.864 -07 000000424 INF: Z Motor: Piezo is near 49.9 V (nominally 0 to 100 V), expect near 58.5 V, since DAC is at 5.852 V. Piezo Error = -8.6 V. 17-03-18 03:48:22.864 -07 000000424 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.6 um, Read 10 ADC samples: Avg = 36617 (-174.7 uncal um), Error = 0.9 uncal um, Median = 36616 (-174.7 uncal um), StdDev = 6 (0.0 uncal um), Range = 20 (0.1 uncal um), Min = 36609 (-174.6 uncal um), Max = 36629 (-174.7 uncal um), Pos Noise = 12 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um) 17-03-18 03:48:22.864 -07 000000424 INF: Z Motor: ADC noise = 12, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36617, posNoise = 12, negNoise = 8 17-03-18 03:48:22.864 -07 000000424 INF: Z Motor: After move to -0.175555, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-18 03:48:22.864 -07 000000424 INF: Z Motor: Settle wait time = 1455 ms, measure time = 108 ms (allowed 150 ms), total time = 1563 ms 17-03-18 03:48:22.864 -07 000000424 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms 17-03-18 03:48:22.914 -07 000000424 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1613 ms 17-03-18 03:48:22.914 -07 000000424 INF: Y Motor: Restored settling times back to 3000 or 1100 ms 17-03-18 03:48:22.914 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-18 03:48:22.914 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-18 03:48:22.914 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-18 03:48:22.914 -07 000000461 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-18 03:48:22.914 -07 000000474 INF: Disarm and arm camera sensor 0: ROITrigger start. 17-03-18 03:48:22.914 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-18 03:48:22.914 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-18 03:48:22.914 -07 000000474 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start. 17-03-18 03:48:22.924 -07 000000474 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms. 17-03-18 03:48:22.924 -07 000000474 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start. 17-03-18 03:48:22.934 -07 000000474 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 8 ms. 17-03-18 03:48:22.934 -07 000000474 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 13 ms. 17-03-18 03:48:22.934 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera] 17-03-18 03:48:22.974 -07 000000474 INF: FPGA: Recv @CAMSNAP turning led on 40 17-03-18 03:48:23.274 -07 000000424 INF: FPGA: Recv @CAMSNAP img rdy 340 17-03-18 03:48:23.274 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340 17-03-18 03:48:23.274 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start. 17-03-18 03:48:23.274 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1201016592, 0x0, 559484976) start. 17-03-18 03:48:23.314 -07 000000461 INF: FPGA: Recv @CAMSNAP 380 17-03-18 03:48:23.314 -07 000000569 INF: FPGA: Recv CAMSNAP 17-03-18 03:48:23.314 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 379 ms to get response, and 384 ms overall 17-03-18 03:48:23.394 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1201016592, 0x0, 559484976) end. Duration was 116 ms. 17-03-18 03:48:23.394 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-18 03:48:23.394 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms. 17-03-18 03:48:23.394 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms. 17-03-18 03:48:23.414 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-18 03:48:23.414 -07 000000569 INF: Autofocus start 17-03-18 03:48:23.414 -07 000000569 INF: MeasureProfile start 17-03-18 03:48:23.414 -07 000000474 INF: FPGA: Recv FOCMRRCUR 17-03-18 03:48:23.424 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall 17-03-18 03:48:23.424 -07 000000424 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror] 17-03-18 03:48:23.424 -07 000000569 INF: MeasureProfile done 17-03-18 03:48:23.424 -07 000000569 INF: X=0 Z correction [um]=-0.0713522 17-03-18 03:48:23.424 -07 000000569 INF: Autofocus finished 17-03-18 03:48:23.624 -07 000000461 INF: FPGA: Recv FOCMRRIMG 17-03-18 03:48:23.624 -07 000000424 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall 17-03-18 03:48:23.624 -07 000000610 INF: ------------ Scan Snapping tile 9 at Y-position 66.53857421875, Z-position -0.175558728005996. ---------- 17-03-18 03:48:23.624 -07 000000610 INF: Cycle 117 Tile 9 Exposure Settings A 411 G 198 T 198 C 411 17-03-18 03:48:23.634 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36847, sync = True, waitForSettling = True) 17-03-18 03:48:23.634 -07 000000610 INF: Z Motor: Moving to -0.168675 mm, started at -0.175559 mm, distance = 6.88 um 17-03-18 03:48:23.634 -07 000000610 INF: FPGA: Xmit ZDACW 36847\n [Z Motor] 17-03-18 03:48:23.634 -07 000000424 INF: FPGA: Recv ZDACW 17-03-18 03:48:23.644 -07 000000610 INF: FPGA: 'ZDACW 36847' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:48:23.644 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-18 03:48:23.644 -07 000000474 INF: FPGA: Recv ZDACR 36847 17-03-18 03:48:23.654 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:48:23.654 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-18 03:48:23.804 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:48:23.804 -07 000000474 INF: FPGA: Recv ZSGSRD 35550 17-03-18 03:48:23.814 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-18 03:48:23.814 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:48:23.814 -07 000000569 INF: FPGA: Recv ZSGSRD 35548 17-03-18 03:48:23.824 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:48:23.824 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:48:23.824 -07 000000461 INF: FPGA: Recv ZSGSRD 35548 17-03-18 03:48:23.834 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:48:23.834 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:48:23.834 -07 000000569 INF: FPGA: Recv ZSGSRD 35544 17-03-18 03:48:23.844 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:48:23.844 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:48:23.844 -07 000000461 INF: FPGA: Recv ZSGSRD 35543 17-03-18 03:48:23.854 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:48:23.854 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:48:23.854 -07 000000424 INF: FPGA: Recv ZSGSRD 35552 17-03-18 03:48:23.864 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:48:23.864 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:48:23.864 -07 000000569 INF: FPGA: Recv ZSGSRD 35545 17-03-18 03:48:23.874 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:48:23.874 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:48:23.874 -07 000000606 INF: FPGA: Recv ZSGSRD 35541 17-03-18 03:48:23.884 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall 17-03-18 03:48:23.884 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:48:23.884 -07 000000438 INF: FPGA: Recv ZSGSRD 35542 17-03-18 03:48:23.894 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:48:23.894 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:48:23.894 -07 000000569 INF: FPGA: Recv ZSGSRD 35548 17-03-18 03:48:23.904 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:48:23.904 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-18 03:48:23.904 -07 000000569 INF: FPGA: Recv ZPIEZORD 31289 17-03-18 03:48:23.914 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:48:23.914 -07 000000610 INF: Z Motor: Piezo is near 46.8 V (nominally 0 to 100 V), expect near 56.2 V, since DAC is at 5.622 V. Piezo Error = -9.4 V. 17-03-18 03:48:23.914 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.7 um, Read 10 ADC samples: Avg = 35546 (-167.8 uncal um), Error = 0.9 uncal um, Median = 35546 (-167.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35541 (-167.8 uncal um), Max = 35552 (-167.8 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um) 17-03-18 03:48:23.914 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35546, posNoise = 6, negNoise = 5 17-03-18 03:48:23.914 -07 000000610 INF: Z Motor: After move to -0.168675, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-18 03:48:23.914 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms) 17-03-18 03:48:23.914 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-18 03:48:23.914 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-18 03:48:23.914 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-18 03:48:23.914 -07 000000606 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-18 03:48:23.914 -07 000000461 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start. 17-03-18 03:48:23.914 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074704) start. 17-03-18 03:48:23.914 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start. 17-03-18 03:48:23.914 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-18 03:48:23.914 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms. 17-03-18 03:48:23.914 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start. 17-03-18 03:48:23.914 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-18 03:48:23.914 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start. 17-03-18 03:48:23.924 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms. 17-03-18 03:48:23.924 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start. 17-03-18 03:48:23.924 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms. 17-03-18 03:48:23.924 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start. 17-03-18 03:48:23.924 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms. 17-03-18 03:48:23.924 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms. 17-03-18 03:48:23.924 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms. 17-03-18 03:48:23.924 -07 000000461 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms. 17-03-18 03:48:23.934 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 411 411 198 198 37024 150\n [Camera] 17-03-18 03:48:24.134 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning red on 192 17-03-18 03:48:24.544 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 603 17-03-18 03:48:24.544 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 603 17-03-18 03:48:24.544 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-18 03:48:24.544 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-18 03:48:24.544 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 2719780968, 0x0, 391868352) start. 17-03-18 03:48:24.544 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 603 17-03-18 03:48:24.544 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 603 17-03-18 03:48:24.544 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-18 03:48:24.544 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-18 03:48:24.544 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2755203232, 0x0, 418435064) start. 17-03-18 03:48:24.734 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37024 796 17-03-18 03:48:24.884 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP turning grn on 946 17-03-18 03:48:24.924 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2755203232, 0x0, 418435064) end. Duration was 378 ms. 17-03-18 03:48:24.924 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms. 17-03-18 03:48:24.924 -07 000000569 INF: Camera: CopyActivePixFullImage start. 17-03-18 03:48:24.934 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-18 03:48:24.934 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 2719780968, 0x0, 391868352) end. Duration was 385 ms. 17-03-18 03:48:24.934 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 385 ms. 17-03-18 03:48:24.934 -07 000000424 INF: Camera: CopyActivePixFullImage start. 17-03-18 03:48:24.934 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-18 03:48:24.934 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 389 ms. 17-03-18 03:48:24.934 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms. 17-03-18 03:48:25.084 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1144 17-03-18 03:48:25.084 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1144 17-03-18 03:48:25.084 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-18 03:48:25.224 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1144 17-03-18 03:48:25.224 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1144 17-03-18 03:48:25.224 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-18 03:48:25.224 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-18 03:48:25.224 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 2818576432, 0x0, 391868352) start. 17-03-18 03:48:25.234 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-18 03:48:25.234 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2165554656, 0x0, 418435064) start. 17-03-18 03:48:25.274 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP 1337 17-03-18 03:48:25.274 -07 000000461 INF: FPGA: Recv CAMDBLSNAP 17-03-18 03:48:25.274 -07 000000610 INF: FPGA: 'CAMDBLSNAP 411 411 198 198 37024 150' command took 2 ms to send, 1337 ms to get response, and 1344 ms overall 17-03-18 03:48:25.274 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880 17-03-18 03:48:25.284 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 10 at Y-position 66.53857421875, Z-Position -0.16867839680217. ------ 17-03-18 03:48:25.284 -07 000000579 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-18 03:48:25.284 -07 000000581 INF: Y Motor: MoveYZ optimized starting. Moving Y to 67.3826 mm, moving Z to -0.17552 mm 17-03-18 03:48:25.284 -07 000000581 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move 17-03-18 03:48:25.284 -07 000000606 INF: Y Motor: Entering MoveAbsStepped (target = 107812 steps, sync = True, waitForSettling = True) 17-03-18 03:48:25.284 -07 000000606 INF: Y Motor: Moving to 67.3826 mm, started at 66.5386 mm, delta = 0.8440 mm 17-03-18 03:48:25.284 -07 000000569 INF: Z Motor: Entering MoveAbsStepped (DAC = 38341, sync = True, waitForSettling = False) 17-03-18 03:48:25.284 -07 000000569 INF: Z Motor: Moving to -0.175514 mm, started at -0.168678 mm, distance = -6.84 um 17-03-18 03:48:25.284 -07 000000444 INF: FPGA: Recv FOCMRRCUR 17-03-18 03:48:25.294 -07 000000579 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall 17-03-18 03:48:25.294 -07 000000606 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 03:48:25.294 -07 000000461 INF: FPGA: Recv YRDPOS 136271 17-03-18 03:48:25.304 -07 000000606 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 13 ms overall 17-03-18 03:48:25.304 -07 000000569 INF: FPGA: Xmit ZDACW 38341\n [Z Motor] 17-03-18 03:48:25.304 -07 000000606 INF: Y Motor: Encoder = 136271 = motor step 106461.7 = 66.5386 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 03:48:25.304 -07 000000606 INF: Y Motor: Last commanded position = 66.5526 mm (106484.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True 17-03-18 03:48:25.304 -07 000000606 INF: Y Motor: Moving 1350 steps-29 17-03-18 03:48:25.304 -07 000000626 INF: FPGA: Recv ZDACW 17-03-18 03:48:25.314 -07 000000579 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror] 17-03-18 03:48:25.314 -07 000000569 INF: FPGA: 'ZDACW 38341' command took 0 ms to send, 0 ms to get response, and 23 ms overall 17-03-18 03:48:25.324 -07 000000606 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor] 17-03-18 03:48:25.334 -07 000000569 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-18 03:48:25.334 -07 000000382 INF: FPGA: Recv ZDACR 38341 17-03-18 03:48:25.344 -07 000000569 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall 17-03-18 03:48:25.344 -07 000000569 INF: Z Motor: MoveAbsStepped took 53 ms (did NOT wait for settling yet)) 17-03-18 03:48:25.514 -07 000000461 INF: FPGA: Recv FOCMRRFOC 17-03-18 03:48:25.514 -07 000000579 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall 17-03-18 03:48:25.624 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2165554656, 0x0, 418435064) end. Duration was 393 ms. 17-03-18 03:48:25.624 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 393 ms. 17-03-18 03:48:25.624 -07 000000424 INF: Camera: CopyActivePixFullImage start. 17-03-18 03:48:25.624 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 2818576432, 0x0, 391868352) end. Duration was 400 ms. 17-03-18 03:48:25.624 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms. 17-03-18 03:48:25.624 -07 000000474 INF: Camera: CopyActivePixFullImage start. 17-03-18 03:48:25.634 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-18 03:48:25.634 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-18 03:48:25.634 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 546 ms. 17-03-18 03:48:25.634 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms. 17-03-18 03:48:25.694 -07 000000569 INF: FPGA: Recv YMVTILE 17-03-18 03:48:25.694 -07 000000606 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 395 ms overall 17-03-18 03:48:25.744 -07 000000606 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 03:48:25.744 -07 000000569 INF: FPGA: Recv YRDPOS 137977 17-03-18 03:48:25.754 -07 000000606 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall 17-03-18 03:48:25.754 -07 000000606 INF: Y Motor: Encoder = 137977 = motor step 107794.5 = 67.3716 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 03:48:25.754 -07 000000606 INF: Y Motor: Position error before settling (table move) = -23 encoder counts (-0.011 mm) 17-03-18 03:48:25.754 -07 000000606 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.844 mm, average velocity = 2.126 mm/sec 17-03-18 03:48:26.604 -07 000000501 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-18 03:48:26.604 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 116. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1683, R2=1752, Total=3435. Warn if over 250 bubbles per interval. 17-03-18 03:48:26.704 -07 000000606 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 03:48:26.704 -07 000000501 INF: FPGA: Recv YRDPOS 137977 17-03-18 03:48:26.714 -07 000000606 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-18 03:48:26.714 -07 000000606 INF: Y Motor: Encoder = 137977 = motor step 107794.5 = 67.3716 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 03:48:26.734 -07 000000606 INF: Y Motor: After move to 67.382607, error = -0.011024, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm 17-03-18 03:48:26.734 -07 000000606 INF: Y Motor: Position error after settling (table move) = -23 encoder counts (-0.011 mm), Delta during settling = 0 counts (0.000 mm) 17-03-18 03:48:26.734 -07 000000606 INF: Y Motor: Moved to 67.3716 after 1453 ms (table move) 17-03-18 03:48:26.744 -07 000000581 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175514 mm (DAC = 38341) 17-03-18 03:48:26.744 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:48:26.744 -07 000000424 INF: FPGA: Recv ZSGSRD 36619 17-03-18 03:48:26.754 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall 17-03-18 03:48:26.754 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:48:26.754 -07 000000569 INF: FPGA: Recv ZSGSRD 36612 17-03-18 03:48:26.764 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:48:26.764 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:48:26.764 -07 000000474 INF: FPGA: Recv ZSGSRD 36614 17-03-18 03:48:26.774 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:48:26.774 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:48:26.774 -07 000000569 INF: FPGA: Recv ZSGSRD 36611 17-03-18 03:48:26.784 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:48:26.784 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:48:26.784 -07 000000569 INF: FPGA: Recv ZSGSRD 36614 17-03-18 03:48:26.794 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:48:26.794 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:48:26.794 -07 000000569 INF: FPGA: Recv ZSGSRD 36606 17-03-18 03:48:26.804 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:48:26.804 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:48:26.804 -07 000000569 INF: FPGA: Recv ZSGSRD 36615 17-03-18 03:48:26.814 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:48:26.814 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:48:26.814 -07 000000474 INF: FPGA: Recv ZSGSRD 36611 17-03-18 03:48:26.824 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:48:26.824 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:48:26.824 -07 000000474 INF: FPGA: Recv ZSGSRD 36612 17-03-18 03:48:26.834 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:48:26.834 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:48:26.834 -07 000000569 INF: FPGA: Recv ZSGSRD 36614 17-03-18 03:48:26.844 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:48:26.844 -07 000000581 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-18 03:48:26.844 -07 000000569 INF: FPGA: Recv ZPIEZORD 32763 17-03-18 03:48:26.854 -07 000000581 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:48:26.854 -07 000000581 INF: Z Motor: Piezo is near 50.0 V (nominally 0 to 100 V), expect near 58.5 V, since DAC is at 5.850 V. Piezo Error = -8.5 V. 17-03-18 03:48:26.854 -07 000000581 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.5 um, Read 10 ADC samples: Avg = 36613 (-174.6 uncal um), Error = 0.9 uncal um, Median = 36613 (-174.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 36606 (-174.6 uncal um), Max = 36619 (-174.7 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um) 17-03-18 03:48:26.854 -07 000000581 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36613, posNoise = 6, negNoise = 7 17-03-18 03:48:26.854 -07 000000581 INF: Z Motor: After move to -0.175514, error = -0.000019, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-18 03:48:26.854 -07 000000581 INF: Z Motor: Settle wait time = 1456 ms, measure time = 107 ms (allowed 150 ms), total time = 1563 ms 17-03-18 03:48:26.854 -07 000000581 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms 17-03-18 03:48:26.904 -07 000000581 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1616 ms 17-03-18 03:48:26.904 -07 000000581 INF: Y Motor: Restored settling times back to 3000 or 1100 ms 17-03-18 03:48:26.904 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-18 03:48:26.904 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-18 03:48:26.904 -07 000000474 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-18 03:48:26.904 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-18 03:48:26.904 -07 000000581 INF: Disarm and arm camera sensor 0: ROITrigger start. 17-03-18 03:48:26.904 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-18 03:48:26.904 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-18 03:48:26.904 -07 000000581 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start. 17-03-18 03:48:26.904 -07 000000581 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms. 17-03-18 03:48:26.914 -07 000000581 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start. 17-03-18 03:48:26.914 -07 000000581 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms. 17-03-18 03:48:26.914 -07 000000581 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms. 17-03-18 03:48:26.914 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera] 17-03-18 03:48:26.964 -07 000000474 INF: FPGA: Recv @CAMSNAP turning led on 43 17-03-18 03:48:27.264 -07 000000569 INF: FPGA: Recv @CAMSNAP img rdy 343 17-03-18 03:48:27.264 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 343 17-03-18 03:48:27.264 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start. 17-03-18 03:48:27.274 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2200976920, 0x0, 559484976) start. 17-03-18 03:48:27.304 -07 000000474 INF: FPGA: Recv @CAMSNAP 380 17-03-18 03:48:27.304 -07 000000569 INF: FPGA: Recv CAMSNAP 17-03-18 03:48:27.304 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 387 ms overall 17-03-18 03:48:27.384 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2200976920, 0x0, 559484976) end. Duration was 114 ms. 17-03-18 03:48:27.384 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-18 03:48:27.384 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms. 17-03-18 03:48:27.384 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms. 17-03-18 03:48:27.404 -07 000000581 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-18 03:48:27.404 -07 000000569 INF: Autofocus start 17-03-18 03:48:27.404 -07 000000569 INF: MeasureProfile start 17-03-18 03:48:27.404 -07 000000474 INF: FPGA: Recv FOCMRRCUR 17-03-18 03:48:27.414 -07 000000581 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall 17-03-18 03:48:27.414 -07 000000581 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror] 17-03-18 03:48:27.424 -07 000000569 INF: MeasureProfile done 17-03-18 03:48:27.424 -07 000000569 INF: X=0 Z correction [um]=-0.0713522 17-03-18 03:48:27.424 -07 000000569 INF: Autofocus finished 17-03-18 03:48:27.614 -07 000000569 INF: FPGA: Recv FOCMRRIMG 17-03-18 03:48:27.614 -07 000000581 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall 17-03-18 03:48:27.614 -07 000000610 INF: ------------ Scan Snapping tile 10 at Y-position 67.37158203125, Z-position -0.175533031157429. ---------- 17-03-18 03:48:27.614 -07 000000610 INF: Cycle 117 Tile 10 Exposure Settings A 411 G 198 T 198 C 411 17-03-18 03:48:27.624 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36838, sync = True, waitForSettling = True) 17-03-18 03:48:27.624 -07 000000610 INF: Z Motor: Moving to -0.168634 mm, started at -0.175533 mm, distance = 6.90 um 17-03-18 03:48:27.624 -07 000000610 INF: FPGA: Xmit ZDACW 36838\n [Z Motor] 17-03-18 03:48:27.624 -07 000000569 INF: FPGA: Recv ZDACW 17-03-18 03:48:27.634 -07 000000610 INF: FPGA: 'ZDACW 36838' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:48:27.634 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-18 03:48:27.634 -07 000000569 INF: FPGA: Recv ZDACR 36838 17-03-18 03:48:27.644 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:48:27.644 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-18 03:48:27.764 -07 000000581 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 117, FrontChillerTemperature: 3.986717, 17-03-18 03:48:27.794 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:48:27.794 -07 000000581 INF: FPGA: Recv ZSGSRD 35539 17-03-18 03:48:27.804 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:48:27.804 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:48:27.804 -07 000000581 INF: FPGA: Recv ZSGSRD 35546 17-03-18 03:48:27.814 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:48:27.824 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:48:27.824 -07 000000581 INF: FPGA: Recv ZSGSRD 35540 17-03-18 03:48:27.834 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall 17-03-18 03:48:27.834 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:48:27.834 -07 000000581 INF: FPGA: Recv ZSGSRD 35539 17-03-18 03:48:27.844 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:48:27.844 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:48:27.844 -07 000000590 INF: FPGA: Recv ZSGSRD 35539 17-03-18 03:48:27.854 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:48:27.854 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:48:27.854 -07 000000474 INF: FPGA: Recv ZSGSRD 35543 17-03-18 03:48:27.864 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:48:27.864 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:48:27.864 -07 000000569 INF: FPGA: Recv ZSGSRD 35541 17-03-18 03:48:27.874 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:48:27.874 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:48:27.874 -07 000000569 INF: FPGA: Recv ZSGSRD 35542 17-03-18 03:48:27.884 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:48:27.884 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:48:27.884 -07 000000474 INF: FPGA: Recv ZSGSRD 35543 17-03-18 03:48:27.894 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:48:27.894 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:48:27.894 -07 000000590 INF: FPGA: Recv ZSGSRD 35539 17-03-18 03:48:27.904 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-18 03:48:27.904 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-18 03:48:27.904 -07 000000581 INF: FPGA: Recv ZPIEZORD 31290 17-03-18 03:48:27.914 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:48:27.914 -07 000000610 INF: Z Motor: Piezo is near 46.8 V (nominally 0 to 100 V), expect near 56.2 V, since DAC is at 5.621 V. Piezo Error = -9.4 V. 17-03-18 03:48:27.914 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.6 um, Read 10 ADC samples: Avg = 35541 (-167.8 uncal um), Error = 0.9 uncal um, Median = 35540 (-167.8 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 35539 (-167.8 uncal um), Max = 35546 (-167.8 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 2 (0.0 uncal um) 17-03-18 03:48:27.914 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35541, posNoise = 5, negNoise = 2 17-03-18 03:48:27.914 -07 000000610 INF: Z Motor: After move to -0.168634, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-18 03:48:27.914 -07 000000610 INF: Z Motor: MoveAbsStepped took 291 ms) 17-03-18 03:48:27.914 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-18 03:48:27.914 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-18 03:48:27.914 -07 000000590 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-18 03:48:27.914 -07 000000581 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-18 03:48:27.914 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start. 17-03-18 03:48:27.914 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-18 03:48:27.914 -07 000000474 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start. 17-03-18 03:48:27.914 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074704) start. 17-03-18 03:48:27.914 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms. 17-03-18 03:48:27.914 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start. 17-03-18 03:48:27.914 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms. 17-03-18 03:48:27.914 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start. 17-03-18 03:48:27.924 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms. 17-03-18 03:48:27.924 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start. 17-03-18 03:48:27.924 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms. 17-03-18 03:48:27.924 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start. 17-03-18 03:48:27.934 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms. 17-03-18 03:48:27.934 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms. 17-03-18 03:48:27.934 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms. 17-03-18 03:48:27.934 -07 000000474 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms. 17-03-18 03:48:27.944 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 411 411 198 198 37015 150\n [Camera] 17-03-18 03:48:28.134 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP turning red on 192 17-03-18 03:48:28.554 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 603 17-03-18 03:48:28.554 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 603 17-03-18 03:48:28.554 -07 000000581 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-18 03:48:28.554 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 603 17-03-18 03:48:28.554 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 603 17-03-18 03:48:28.554 -07 000000444 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-18 03:48:28.554 -07 000000581 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-18 03:48:28.554 -07 000000581 INF: Camera: sBCa_ReadImage(785074288, 2220058304, 0x0, 391868352) start. 17-03-18 03:48:28.564 -07 000000444 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-18 03:48:28.564 -07 000000444 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start. 17-03-18 03:48:28.744 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37015 796 17-03-18 03:48:28.894 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP turning grn on 946 17-03-18 03:48:28.944 -07 000000581 INF: Camera: sBCa_ReadImage(785074288, 2220058304, 0x0, 391868352) end. Duration was 383 ms. 17-03-18 03:48:28.944 -07 000000581 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 383 ms. 17-03-18 03:48:28.944 -07 000000581 INF: Camera: CopyActivePixFullImage start. 17-03-18 03:48:28.944 -07 000000581 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-18 03:48:28.944 -07 000000581 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 392 ms. 17-03-18 03:48:28.944 -07 000000444 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 381 ms. 17-03-18 03:48:28.944 -07 000000444 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms. 17-03-18 03:48:28.944 -07 000000444 INF: Camera: CopyActivePixFullImage start. 17-03-18 03:48:28.944 -07 000000444 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-18 03:48:28.954 -07 000000444 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 400 ms. 17-03-18 03:48:29.104 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1144 17-03-18 03:48:29.104 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1144 17-03-18 03:48:29.104 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1144 17-03-18 03:48:29.104 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1144 17-03-18 03:48:29.104 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-18 03:48:29.104 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-18 03:48:29.114 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-18 03:48:29.114 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 2165554656, 0x0, 418435064) start. 17-03-18 03:48:29.114 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-18 03:48:29.114 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start. 17-03-18 03:48:29.284 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP 1336 17-03-18 03:48:29.284 -07 000000581 INF: FPGA: Recv CAMDBLSNAP 17-03-18 03:48:29.284 -07 000000610 INF: FPGA: 'CAMDBLSNAP 411 411 198 198 37015 150' command took 2 ms to send, 1334 ms to get response, and 1344 ms overall 17-03-18 03:48:29.284 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880 17-03-18 03:48:29.284 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 11 at Y-position 67.37158203125, Z-Position -0.168646275741461. ------ 17-03-18 03:48:29.294 -07 000000569 INF: Y Motor: MoveYZ optimized starting. Moving Y to 68.2126 mm, moving Z to -0.17494 mm 17-03-18 03:48:29.294 -07 000000569 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move 17-03-18 03:48:29.294 -07 000000382 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-18 03:48:29.294 -07 000000626 INF: Y Motor: Entering MoveAbsStepped (target = 109140 steps, sync = True, waitForSettling = True) 17-03-18 03:48:29.294 -07 000000626 INF: Y Motor: Moving to 68.2126 mm, started at 67.3716 mm, delta = 0.8410 mm 17-03-18 03:48:29.294 -07 000000444 INF: FPGA: Recv FOCMRRCUR 17-03-18 03:48:29.294 -07 000000581 INF: Z Motor: Entering MoveAbsStepped (DAC = 38215, sync = True, waitForSettling = False) 17-03-18 03:48:29.294 -07 000000581 INF: Z Motor: Moving to -0.174937 mm, started at -0.168646 mm, distance = -6.29 um 17-03-18 03:48:29.304 -07 000000382 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:48:29.304 -07 000000581 INF: FPGA: Xmit ZDACW 38215\n [Z Motor] 17-03-18 03:48:29.304 -07 000000590 INF: FPGA: Recv ZDACW 17-03-18 03:48:29.314 -07 000000581 INF: FPGA: 'ZDACW 38215' command took 0 ms to send, 0 ms to get response, and 15 ms overall 17-03-18 03:48:29.314 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 03:48:29.314 -07 000000606 INF: FPGA: Recv YRDPOS 137977 17-03-18 03:48:29.324 -07 000000382 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror] 17-03-18 03:48:29.324 -07 000000626 INF: FPGA: 'YRDPOS' command took 3 ms to send, 0 ms to get response, and 26 ms overall 17-03-18 03:48:29.324 -07 000000626 INF: Y Motor: Encoder = 137977 = motor step 107794.5 = 67.3716 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 03:48:29.324 -07 000000626 INF: Y Motor: Last commanded position = 67.3826 mm (107812.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True 17-03-18 03:48:29.324 -07 000000626 INF: Y Motor: Moving 1346 steps-23 17-03-18 03:48:29.334 -07 000000581 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-18 03:48:29.334 -07 000000461 INF: FPGA: Recv ZDACR 38215 17-03-18 03:48:29.344 -07 000000581 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall 17-03-18 03:48:29.344 -07 000000581 INF: Z Motor: MoveAbsStepped took 45 ms (did NOT wait for settling yet)) 17-03-18 03:48:29.344 -07 000000626 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor] 17-03-18 03:48:29.514 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 2165554656, 0x0, 418435064) end. Duration was 398 ms. 17-03-18 03:48:29.514 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms. 17-03-18 03:48:29.514 -07 000000579 INF: Camera: CopyActivePixFullImage start. 17-03-18 03:48:29.514 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 398 ms. 17-03-18 03:48:29.514 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms. 17-03-18 03:48:29.514 -07 000000474 INF: Camera: CopyActivePixFullImage start. 17-03-18 03:48:29.514 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-18 03:48:29.514 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-18 03:48:29.524 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms. 17-03-18 03:48:29.524 -07 000000461 INF: FPGA: Recv FOCMRRFOC 17-03-18 03:48:29.524 -07 000000382 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall 17-03-18 03:48:29.524 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 417 ms. 17-03-18 03:48:29.714 -07 000000438 INF: FPGA: Recv YMVTILE 17-03-18 03:48:29.714 -07 000000626 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 398 ms overall 17-03-18 03:48:29.764 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 03:48:29.764 -07 000000474 INF: FPGA: Recv YRDPOS 139683 17-03-18 03:48:29.774 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall 17-03-18 03:48:29.774 -07 000000626 INF: Y Motor: Encoder = 139683 = motor step 109127.3 = 68.2046 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 03:48:29.774 -07 000000626 INF: Y Motor: Position error before settling (table move) = -16 encoder counts (-0.008 mm) 17-03-18 03:48:29.774 -07 000000626 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.841 mm, average velocity = 2.113 mm/sec 17-03-18 03:48:30.724 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 03:48:30.724 -07 000000579 INF: FPGA: Recv YRDPOS 139683 17-03-18 03:48:30.734 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:48:30.734 -07 000000626 INF: Y Motor: Encoder = 139683 = motor step 109127.3 = 68.2046 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 03:48:30.754 -07 000000626 INF: Y Motor: After move to 68.212608, error = -0.008018, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm 17-03-18 03:48:30.764 -07 000000626 INF: Y Motor: Position error after settling (table move) = -16 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm) 17-03-18 03:48:30.764 -07 000000626 INF: Y Motor: Moved to 68.2046 after 1466 ms (table move) 17-03-18 03:48:30.764 -07 000000569 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174937 mm (DAC = 38215) 17-03-18 03:48:30.774 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:48:30.774 -07 000000606 INF: FPGA: Recv ZSGSRD 36525 17-03-18 03:48:30.784 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 16 ms overall 17-03-18 03:48:30.784 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:48:30.784 -07 000000606 INF: FPGA: Recv ZSGSRD 36522 17-03-18 03:48:30.794 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-18 03:48:30.804 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:48:30.804 -07 000000606 INF: FPGA: Recv ZSGSRD 36518 17-03-18 03:48:30.814 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall 17-03-18 03:48:30.814 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:48:30.814 -07 000000606 INF: FPGA: Recv ZSGSRD 36517 17-03-18 03:48:30.824 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:48:30.824 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:48:30.824 -07 000000606 INF: FPGA: Recv ZSGSRD 36518 17-03-18 03:48:30.834 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:48:30.834 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:48:30.834 -07 000000606 INF: FPGA: Recv ZSGSRD 36524 17-03-18 03:48:30.844 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:48:30.844 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:48:30.844 -07 000000606 INF: FPGA: Recv ZSGSRD 36525 17-03-18 03:48:30.854 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:48:30.854 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:48:30.854 -07 000000606 INF: FPGA: Recv ZSGSRD 36530 17-03-18 03:48:30.864 -07 000000569 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:48:30.864 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:48:30.864 -07 000000606 INF: FPGA: Recv ZSGSRD 36522 17-03-18 03:48:30.874 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:48:30.874 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:48:30.874 -07 000000606 INF: FPGA: Recv ZSGSRD 36520 17-03-18 03:48:30.884 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:48:30.884 -07 000000569 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-18 03:48:30.884 -07 000000606 INF: FPGA: Recv ZPIEZORD 32619 17-03-18 03:48:30.894 -07 000000569 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:48:30.894 -07 000000569 INF: Z Motor: Piezo is near 49.7 V (nominally 0 to 100 V), expect near 58.3 V, since DAC is at 5.831 V. Piezo Error = -8.6 V. 17-03-18 03:48:30.894 -07 000000569 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.9 um, Read 10 ADC samples: Avg = 36522 (-174.1 uncal um), Error = 0.9 uncal um, Median = 36522 (-174.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 36517 (-174.0 uncal um), Max = 36530 (-174.1 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um) 17-03-18 03:48:30.894 -07 000000569 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36522, posNoise = 8, negNoise = 5 17-03-18 03:48:30.894 -07 000000569 INF: Z Motor: After move to -0.174937, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-18 03:48:30.894 -07 000000569 INF: Z Motor: Settle wait time = 1468 ms, measure time = 128 ms (allowed 150 ms), total time = 1596 ms 17-03-18 03:48:30.894 -07 000000569 INF: Z Motor: Waiting extra 22 ms after reading position to reach expected total of 150 ms 17-03-18 03:48:30.924 -07 000000569 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1629 ms 17-03-18 03:48:30.924 -07 000000569 INF: Y Motor: Restored settling times back to 3000 or 1100 ms 17-03-18 03:48:30.924 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-18 03:48:30.924 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-18 03:48:30.924 -07 000000606 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-18 03:48:30.924 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-18 03:48:30.924 -07 000000606 INF: Disarm and arm camera sensor 0: ROITrigger start. 17-03-18 03:48:30.924 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-18 03:48:30.934 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-18 03:48:30.934 -07 000000606 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start. 17-03-18 03:48:30.934 -07 000000606 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms. 17-03-18 03:48:30.934 -07 000000606 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start. 17-03-18 03:48:30.934 -07 000000606 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms. 17-03-18 03:48:30.944 -07 000000606 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms. 17-03-18 03:48:30.944 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera] 17-03-18 03:48:30.984 -07 000000569 INF: FPGA: Recv @CAMSNAP turning led on 40 17-03-18 03:48:31.284 -07 000000606 INF: FPGA: Recv @CAMSNAP img rdy 340 17-03-18 03:48:31.284 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340 17-03-18 03:48:31.284 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start. 17-03-18 03:48:31.294 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2200976920, 0x0, 559484976) start. 17-03-18 03:48:31.324 -07 000000424 INF: FPGA: Recv @CAMSNAP 380 17-03-18 03:48:31.324 -07 000000569 INF: FPGA: Recv CAMSNAP 17-03-18 03:48:31.324 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 378 ms to get response, and 384 ms overall 17-03-18 03:48:31.404 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2200976920, 0x0, 559484976) end. Duration was 115 ms. 17-03-18 03:48:31.404 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-18 03:48:31.404 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms. 17-03-18 03:48:31.404 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms. 17-03-18 03:48:31.424 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-18 03:48:31.424 -07 000000569 INF: Autofocus start 17-03-18 03:48:31.424 -07 000000569 INF: MeasureProfile start 17-03-18 03:48:31.424 -07 000000606 INF: FPGA: Recv FOCMRRCUR 17-03-18 03:48:31.434 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall 17-03-18 03:48:31.434 -07 000000424 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror] 17-03-18 03:48:31.434 -07 000000569 INF: MeasureProfile done 17-03-18 03:48:31.434 -07 000000569 INF: X=0 Z correction [um]=-0.0713522 17-03-18 03:48:31.434 -07 000000569 INF: Autofocus finished 17-03-18 03:48:31.614 -07 000000579 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-18 03:48:31.614 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 116. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1683, R2=1752, Total=3435. Warn if over 250 bubbles per interval. 17-03-18 03:48:31.634 -07 000000579 INF: FPGA: Recv FOCMRRIMG 17-03-18 03:48:31.634 -07 000000424 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 202 ms overall 17-03-18 03:48:31.634 -07 000000610 INF: ------------ Scan Snapping tile 11 at Y-position 68.20458984375, Z-position -0.174948427852529. ---------- 17-03-18 03:48:31.634 -07 000000610 INF: Cycle 117 Tile 11 Exposure Settings A 411 G 198 T 198 C 411 17-03-18 03:48:31.644 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36712, sync = True, waitForSettling = True) 17-03-18 03:48:31.644 -07 000000610 INF: Z Motor: Moving to -0.168057 mm, started at -0.174948 mm, distance = 6.89 um 17-03-18 03:48:31.644 -07 000000610 INF: FPGA: Xmit ZDACW 36712\n [Z Motor] 17-03-18 03:48:31.644 -07 000000579 INF: FPGA: Recv ZDACW 17-03-18 03:48:31.654 -07 000000610 INF: FPGA: 'ZDACW 36712' command took 0 ms to send, 0 ms to get response, and 8 ms overall 17-03-18 03:48:31.654 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-18 03:48:31.654 -07 000000590 INF: FPGA: Recv ZDACR 36712 17-03-18 03:48:31.664 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:48:31.664 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-18 03:48:31.814 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:48:31.814 -07 000000579 INF: FPGA: Recv ZSGSRD 35455 17-03-18 03:48:31.824 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-18 03:48:31.824 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:48:31.824 -07 000000606 INF: FPGA: Recv ZSGSRD 35450 17-03-18 03:48:31.834 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:48:31.834 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:48:31.834 -07 000000501 INF: FPGA: Recv ZSGSRD 35452 17-03-18 03:48:31.844 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:48:31.844 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:48:31.844 -07 000000382 INF: FPGA: Recv ZSGSRD 35448 17-03-18 03:48:31.854 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:48:31.854 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:48:31.854 -07 000000590 INF: FPGA: Recv ZSGSRD 35456 17-03-18 03:48:31.864 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:48:31.864 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:48:31.864 -07 000000382 INF: FPGA: Recv ZSGSRD 35452 17-03-18 03:48:31.874 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:48:31.874 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:48:31.874 -07 000000579 INF: FPGA: Recv ZSGSRD 35446 17-03-18 03:48:31.884 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:48:31.884 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:48:31.884 -07 000000569 INF: FPGA: Recv ZSGSRD 35451 17-03-18 03:48:31.894 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:48:31.894 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:48:31.894 -07 000000590 INF: FPGA: Recv ZSGSRD 35453 17-03-18 03:48:31.904 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:48:31.904 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:48:31.904 -07 000000606 INF: FPGA: Recv ZSGSRD 35450 17-03-18 03:48:31.914 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:48:31.914 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-18 03:48:31.914 -07 000000590 INF: FPGA: Recv ZPIEZORD 31200 17-03-18 03:48:31.924 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:48:31.924 -07 000000610 INF: Z Motor: Piezo is near 46.7 V (nominally 0 to 100 V), expect near 56.0 V, since DAC is at 5.602 V. Piezo Error = -9.4 V. 17-03-18 03:48:31.924 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.1 um, Read 10 ADC samples: Avg = 35451 (-167.2 uncal um), Error = 0.9 uncal um, Median = 35452 (-167.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35446 (-167.2 uncal um), Max = 35456 (-167.2 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um) 17-03-18 03:48:31.924 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35451, posNoise = 5, negNoise = 5 17-03-18 03:48:31.924 -07 000000610 INF: Z Motor: After move to -0.168057, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-18 03:48:31.924 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms) 17-03-18 03:48:31.924 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-18 03:48:31.924 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-18 03:48:31.924 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-18 03:48:31.924 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-18 03:48:31.924 -07 000000579 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start. 17-03-18 03:48:31.924 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-18 03:48:31.924 -07 000000590 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start. 17-03-18 03:48:31.924 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074704) start. 17-03-18 03:48:31.924 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms. 17-03-18 03:48:31.924 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start. 17-03-18 03:48:31.924 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms. 17-03-18 03:48:31.924 -07 000000590 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start. 17-03-18 03:48:31.934 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms. 17-03-18 03:48:31.934 -07 000000590 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms. 17-03-18 03:48:31.934 -07 000000590 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start. 17-03-18 03:48:31.934 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start. 17-03-18 03:48:31.944 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 12 ms. 17-03-18 03:48:31.944 -07 000000579 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 19 ms. 17-03-18 03:48:31.944 -07 000000590 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 12 ms. 17-03-18 03:48:31.944 -07 000000590 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 19 ms. 17-03-18 03:48:31.944 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 411 411 198 198 36889 150\n [Camera] 17-03-18 03:48:32.144 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP turning red on 192 17-03-18 03:48:32.554 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 603 17-03-18 03:48:32.554 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 603 17-03-18 03:48:32.554 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-18 03:48:32.564 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 603 17-03-18 03:48:32.564 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 603 17-03-18 03:48:32.564 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-18 03:48:32.564 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-18 03:48:32.564 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start. 17-03-18 03:48:32.564 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-18 03:48:32.564 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 2215653000, 0x0, 391868352) start. 17-03-18 03:48:32.754 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36889 796 17-03-18 03:48:32.904 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning grn on 946 17-03-18 03:48:32.944 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 2215653000, 0x0, 391868352) end. Duration was 380 ms. 17-03-18 03:48:32.944 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms. 17-03-18 03:48:32.944 -07 000000424 INF: Camera: CopyActivePixFullImage start. 17-03-18 03:48:32.944 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 384 ms. 17-03-18 03:48:32.944 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 384 ms. 17-03-18 03:48:32.944 -07 000000606 INF: Camera: CopyActivePixFullImage start. 17-03-18 03:48:32.944 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-18 03:48:32.944 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 389 ms. 17-03-18 03:48:32.954 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-18 03:48:32.954 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 395 ms. 17-03-18 03:48:33.094 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1144 17-03-18 03:48:33.094 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1144 17-03-18 03:48:33.094 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-18 03:48:33.204 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1144 17-03-18 03:48:33.204 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1144 17-03-18 03:48:33.204 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-18 03:48:33.214 -07 000000474 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 117, FrontChillerTemperature: 4.000345, 17-03-18 03:48:33.214 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-18 03:48:33.214 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start. 17-03-18 03:48:33.214 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-18 03:48:33.214 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 2165554656, 0x0, 418435064) start. 17-03-18 03:48:33.614 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 400 ms. 17-03-18 03:48:33.614 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms. 17-03-18 03:48:33.614 -07 000000424 INF: Camera: CopyActivePixFullImage start. 17-03-18 03:48:33.614 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 2165554656, 0x0, 418435064) end. Duration was 401 ms. 17-03-18 03:48:33.614 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms. 17-03-18 03:48:33.614 -07 000000579 INF: Camera: CopyActivePixFullImage start. 17-03-18 03:48:33.624 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-18 03:48:33.624 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 522 ms. 17-03-18 03:48:33.624 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-18 03:48:33.624 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 419 ms. 17-03-18 03:48:33.634 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP 1337 17-03-18 03:48:33.634 -07 000000569 INF: FPGA: Recv CAMDBLSNAP 17-03-18 03:48:33.644 -07 000000610 INF: FPGA: 'CAMDBLSNAP 411 411 198 198 36889 150' command took 2 ms to send, 1689 ms to get response, and 1693 ms overall 17-03-18 03:48:33.644 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880 17-03-18 03:48:33.644 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 12 at Y-position 68.20458984375, Z-Position -0.168068096648703. ------ 17-03-18 03:48:33.644 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-18 03:48:34.324 -07 000000626 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.0426 mm, moving Z to -0.17471 mm 17-03-18 03:48:34.324 -07 000000626 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move 17-03-18 03:48:35.324 -07 000000438 INF: FPGA: Recv FOCMRRCUR 17-03-18 03:48:35.324 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1670 ms to get response, and 1676 ms overall 17-03-18 03:48:35.324 -07 000000569 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror] 17-03-18 03:48:35.324 -07 000000438 INF: Y Motor: Entering MoveAbsStepped (target = 110468 steps, sync = True, waitForSettling = True) 17-03-18 03:48:35.324 -07 000000438 INF: Y Motor: Moving to 69.0426 mm, started at 68.2046 mm, delta = 0.8380 mm 17-03-18 03:48:35.334 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 03:48:36.324 -07 000000461 INF: Z Motor: Entering MoveAbsStepped (DAC = 38166, sync = True, waitForSettling = False) 17-03-18 03:48:36.324 -07 000000461 INF: Z Motor: Moving to -0.174713 mm, started at -0.168068 mm, distance = -6.64 um 17-03-18 03:48:36.324 -07 000000461 INF: FPGA: Xmit ZDACW 38166\n [Z Motor] 17-03-18 03:48:37.324 -07 000000581 INF: FPGA: Recv YRDPOS 139684 17-03-18 03:48:37.324 -07 000000581 INF: FPGA: Recv FOCMRRFOC 17-03-18 03:48:37.324 -07 000000581 INF: FPGA: Recv ZDACW 17-03-18 03:48:37.324 -07 000000581 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-18 03:48:37.324 -07 000000569 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 1990 ms to get response, and 1999 ms overall 17-03-18 03:48:37.324 -07 000000461 INF: FPGA: 'ZDACW 38166' command took 0 ms to send, 990 ms to get response, and 995 ms overall 17-03-18 03:48:37.324 -07 000000461 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-18 03:48:37.324 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 116. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1683, R2=1752, Total=3435. Warn if over 250 bubbles per interval. 17-03-18 03:48:37.324 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1980 ms to get response, and 1998 ms overall 17-03-18 03:48:37.324 -07 000000438 INF: Y Motor: Encoder = 139684 = motor step 109128.1 = 68.2051 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 03:48:37.324 -07 000000569 INF: FPGA: Recv ZDACR 38166 17-03-18 03:48:37.324 -07 000000438 INF: Y Motor: Last commanded position = 68.2126 mm (109140.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True 17-03-18 03:48:37.324 -07 000000438 INF: Y Motor: Moving 1340 steps-16 17-03-18 03:48:37.334 -07 000000461 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 8 ms overall 17-03-18 03:48:37.334 -07 000000461 INF: Z Motor: MoveAbsStepped took 1005 ms (did NOT wait for settling yet)) 17-03-18 03:48:37.334 -07 000000438 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor] 17-03-18 03:48:37.714 -07 000000581 INF: FPGA: Recv YMVTILE 17-03-18 03:48:37.714 -07 000000438 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 370 ms to get response, and 384 ms overall 17-03-18 03:48:37.754 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 03:48:37.754 -07 000000581 INF: FPGA: Recv YRDPOS 141366 17-03-18 03:48:37.764 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall 17-03-18 03:48:37.764 -07 000000438 INF: Y Motor: Encoder = 141366 = motor step 110442.2 = 69.0264 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 03:48:37.764 -07 000000438 INF: Y Motor: Position error before settling (table move) = -33 encoder counts (-0.016 mm) 17-03-18 03:48:37.764 -07 000000438 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 384 ms, distance = 0.838 mm, average velocity = 2.182 mm/sec 17-03-18 03:48:38.574 -07 000000581 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 117, FrontChillerTemperature: 3.997626, 17-03-18 03:48:38.714 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 03:48:38.714 -07 000000581 INF: FPGA: Recv YRDPOS 141366 17-03-18 03:48:38.724 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-18 03:48:38.724 -07 000000438 INF: Y Motor: Encoder = 141366 = motor step 110442.2 = 69.0264 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 03:48:38.744 -07 000000438 INF: Y Motor: After move to 69.042610, error = -0.016243, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm 17-03-18 03:48:38.744 -07 000000438 INF: Y Motor: Position error after settling (table move) = -33 encoder counts (-0.016 mm), Delta during settling = 0 counts (0.000 mm) 17-03-18 03:48:38.744 -07 000000438 INF: Y Motor: Moved to 69.0264 after 3427 ms (table move) 17-03-18 03:48:38.754 -07 000000626 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174713 mm (DAC = 38166) 17-03-18 03:48:38.754 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:48:38.754 -07 000000579 INF: FPGA: Recv ZSGSRD 36496 17-03-18 03:48:38.764 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall 17-03-18 03:48:38.764 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:48:38.764 -07 000000438 INF: FPGA: Recv ZSGSRD 36495 17-03-18 03:48:38.774 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:48:38.774 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:48:38.774 -07 000000444 INF: FPGA: Recv ZSGSRD 36487 17-03-18 03:48:38.784 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:48:38.784 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:48:38.784 -07 000000581 INF: FPGA: Recv ZSGSRD 36487 17-03-18 03:48:38.794 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:48:38.794 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:48:38.794 -07 000000438 INF: FPGA: Recv ZSGSRD 36484 17-03-18 03:48:38.804 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:48:38.804 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:48:38.804 -07 000000444 INF: FPGA: Recv ZSGSRD 36483 17-03-18 03:48:38.814 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:48:38.814 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:48:38.814 -07 000000501 INF: FPGA: Recv ZSGSRD 36488 17-03-18 03:48:38.824 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:48:38.824 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:48:38.824 -07 000000444 INF: FPGA: Recv ZSGSRD 36480 17-03-18 03:48:38.834 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:48:38.834 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:48:38.834 -07 000000438 INF: FPGA: Recv ZSGSRD 36489 17-03-18 03:48:38.844 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:48:38.844 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:48:38.844 -07 000000444 INF: FPGA: Recv ZSGSRD 36491 17-03-18 03:48:38.854 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:48:38.854 -07 000000626 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-18 03:48:38.854 -07 000000579 INF: FPGA: Recv ZPIEZORD 32583 17-03-18 03:48:38.864 -07 000000626 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:48:38.864 -07 000000626 INF: Z Motor: Piezo is near 49.6 V (nominally 0 to 100 V), expect near 58.2 V, since DAC is at 5.824 V. Piezo Error = -8.6 V. 17-03-18 03:48:38.864 -07 000000626 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.7 um, Read 10 ADC samples: Avg = 36488 (-173.8 uncal um), Error = 0.9 uncal um, Median = 36488 (-173.8 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 36480 (-173.8 uncal um), Max = 36496 (-173.9 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um) 17-03-18 03:48:38.864 -07 000000626 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36488, posNoise = 8, negNoise = 8 17-03-18 03:48:38.864 -07 000000626 INF: Z Motor: After move to -0.174713, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-18 03:48:38.864 -07 000000626 INF: Z Motor: Settle wait time = 2429 ms, measure time = 106 ms (allowed 150 ms), total time = 2535 ms 17-03-18 03:48:38.864 -07 000000626 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms 17-03-18 03:48:38.914 -07 000000626 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 4588 ms 17-03-18 03:48:38.914 -07 000000626 INF: Y Motor: Restored settling times back to 3000 or 1100 ms 17-03-18 03:48:38.914 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-18 03:48:38.914 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-18 03:48:38.914 -07 000000438 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-18 03:48:38.914 -07 000000444 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-18 03:48:38.914 -07 000000579 INF: Disarm and arm camera sensor 0: ROITrigger start. 17-03-18 03:48:38.914 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-18 03:48:38.914 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-18 03:48:38.914 -07 000000579 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start. 17-03-18 03:48:38.924 -07 000000579 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms. 17-03-18 03:48:38.924 -07 000000579 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start. 17-03-18 03:48:38.934 -07 000000579 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms. 17-03-18 03:48:38.934 -07 000000579 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms. 17-03-18 03:48:38.934 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera] 17-03-18 03:48:38.984 -07 000000474 INF: FPGA: Recv @CAMSNAP turning led on 40 17-03-18 03:48:39.284 -07 000000626 INF: FPGA: Recv @CAMSNAP img rdy 340 17-03-18 03:48:39.284 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340 17-03-18 03:48:39.284 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start. 17-03-18 03:48:39.284 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2217851984, 0x0, 559484976) start. 17-03-18 03:48:39.324 -07 000000579 INF: FPGA: Recv @CAMSNAP 380 17-03-18 03:48:39.324 -07 000000606 INF: FPGA: Recv CAMSNAP 17-03-18 03:48:39.324 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 382 ms to get response, and 385 ms overall 17-03-18 03:48:39.404 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2217851984, 0x0, 559484976) end. Duration was 118 ms. 17-03-18 03:48:39.404 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-18 03:48:39.404 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms. 17-03-18 03:48:39.404 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 124 ms. 17-03-18 03:48:39.424 -07 000000581 INF: Autofocus start 17-03-18 03:48:39.424 -07 000000581 INF: MeasureProfile start 17-03-18 03:48:39.424 -07 000000606 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-18 03:48:39.424 -07 000000501 INF: FPGA: Recv FOCMRRCUR 17-03-18 03:48:39.434 -07 000000606 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall 17-03-18 03:48:39.434 -07 000000606 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror] 17-03-18 03:48:39.434 -07 000000581 INF: MeasureProfile done 17-03-18 03:48:39.434 -07 000000581 INF: X=16 Z correction [um]=0.01042744 17-03-18 03:48:39.434 -07 000000581 INF: Autofocus finished 17-03-18 03:48:39.634 -07 000000424 INF: FPGA: Recv FOCMRRIMG 17-03-18 03:48:39.634 -07 000000606 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall 17-03-18 03:48:39.634 -07 000000610 INF: ------------ Scan Snapping tile 12 at Y-position 69.0263671875, Z-position -0.174730004639709. ---------- 17-03-18 03:48:39.644 -07 000000610 INF: Cycle 117 Tile 12 Exposure Settings A 411 G 198 T 198 C 411 17-03-18 03:48:39.644 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36681, sync = True, waitForSettling = True) 17-03-18 03:48:39.644 -07 000000610 INF: Z Motor: Moving to -0.167915 mm, started at -0.174730 mm, distance = 6.82 um 17-03-18 03:48:39.644 -07 000000610 INF: FPGA: Xmit ZDACW 36681\n [Z Motor] 17-03-18 03:48:39.644 -07 000000501 INF: FPGA: Recv ZDACW 17-03-18 03:48:39.654 -07 000000610 INF: FPGA: 'ZDACW 36681' command took 0 ms to send, 0 ms to get response, and 7 ms overall 17-03-18 03:48:39.654 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-18 03:48:39.654 -07 000000579 INF: FPGA: Recv ZDACR 36681 17-03-18 03:48:39.664 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:48:39.664 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-18 03:48:39.814 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:48:39.814 -07 000000474 INF: FPGA: Recv ZSGSRD 35427 17-03-18 03:48:39.824 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-18 03:48:39.824 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:48:39.824 -07 000000501 INF: FPGA: Recv ZSGSRD 35431 17-03-18 03:48:39.834 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:48:39.834 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:48:39.834 -07 000000474 INF: FPGA: Recv ZSGSRD 35430 17-03-18 03:48:39.844 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:48:39.844 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:48:39.844 -07 000000579 INF: FPGA: Recv ZSGSRD 35424 17-03-18 03:48:39.854 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:48:39.854 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:48:39.854 -07 000000581 INF: FPGA: Recv ZSGSRD 35430 17-03-18 03:48:39.864 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:48:39.864 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:48:39.864 -07 000000579 INF: FPGA: Recv ZSGSRD 35432 17-03-18 03:48:39.874 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:48:39.874 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:48:39.874 -07 000000474 INF: FPGA: Recv ZSGSRD 35428 17-03-18 03:48:39.884 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:48:39.884 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:48:39.884 -07 000000579 INF: FPGA: Recv ZSGSRD 35433 17-03-18 03:48:39.894 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:48:39.894 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:48:39.894 -07 000000606 INF: FPGA: Recv ZSGSRD 35426 17-03-18 03:48:39.904 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:48:39.904 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:48:39.904 -07 000000474 INF: FPGA: Recv ZSGSRD 35428 17-03-18 03:48:39.914 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:48:39.914 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-18 03:48:39.914 -07 000000579 INF: FPGA: Recv ZPIEZORD 31168 17-03-18 03:48:39.924 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:48:39.924 -07 000000610 INF: Z Motor: Piezo is near 46.6 V (nominally 0 to 100 V), expect near 56.0 V, since DAC is at 5.597 V. Piezo Error = -9.4 V. 17-03-18 03:48:39.924 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.9 um, Read 10 ADC samples: Avg = 35429 (-167.1 uncal um), Error = 0.9 uncal um, Median = 35429 (-167.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35424 (-167.0 uncal um), Max = 35433 (-167.1 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um) 17-03-18 03:48:39.924 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35429, posNoise = 4, negNoise = 5 17-03-18 03:48:39.924 -07 000000610 INF: Z Motor: After move to -0.167915, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-18 03:48:39.924 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms) 17-03-18 03:48:39.924 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-18 03:48:39.924 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-18 03:48:39.924 -07 000000444 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-18 03:48:39.924 -07 000000606 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-18 03:48:39.924 -07 000000438 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start. 17-03-18 03:48:39.924 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-18 03:48:39.924 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start. 17-03-18 03:48:39.924 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) start. 17-03-18 03:48:39.924 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms. 17-03-18 03:48:39.924 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start. 17-03-18 03:48:39.924 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms. 17-03-18 03:48:39.924 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start. 17-03-18 03:48:39.934 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms. 17-03-18 03:48:39.934 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start. 17-03-18 03:48:39.934 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms. 17-03-18 03:48:39.934 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start. 17-03-18 03:48:39.944 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms. 17-03-18 03:48:39.944 -07 000000438 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms. 17-03-18 03:48:39.944 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms. 17-03-18 03:48:39.944 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms. 17-03-18 03:48:39.944 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 411 411 198 198 36858 150\n [Camera] 17-03-18 03:48:40.144 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP turning red on 192 17-03-18 03:48:40.554 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 603 17-03-18 03:48:40.554 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 603 17-03-18 03:48:40.554 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 603 17-03-18 03:48:40.554 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 603 17-03-18 03:48:40.554 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-18 03:48:40.554 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-18 03:48:40.554 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start. 17-03-18 03:48:40.554 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-18 03:48:40.554 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-18 03:48:40.554 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start. 17-03-18 03:48:40.934 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 376 ms. 17-03-18 03:48:40.934 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms. 17-03-18 03:48:40.934 -07 000000626 INF: Camera: CopyActivePixFullImage start. 17-03-18 03:48:40.934 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-18 03:48:40.944 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 383 ms. 17-03-18 03:48:40.944 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 383 ms. 17-03-18 03:48:40.944 -07 000000579 INF: Camera: CopyActivePixFullImage start. 17-03-18 03:48:40.944 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-18 03:48:40.944 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms. 17-03-18 03:48:40.944 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms. 17-03-18 03:48:40.954 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36858 796 17-03-18 03:48:40.954 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP turning grn on 946 17-03-18 03:48:41.094 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1144 17-03-18 03:48:41.094 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1144 17-03-18 03:48:41.094 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-18 03:48:41.204 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1144 17-03-18 03:48:41.204 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1144 17-03-18 03:48:41.204 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-18 03:48:41.214 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-18 03:48:41.214 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-18 03:48:41.214 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2165554656, 0x0, 418435064) start. 17-03-18 03:48:41.214 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start. 17-03-18 03:48:41.614 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2165554656, 0x0, 418435064) end. Duration was 403 ms. 17-03-18 03:48:41.614 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 404 ms. 17-03-18 03:48:41.614 -07 000000626 INF: Camera: CopyActivePixFullImage start. 17-03-18 03:48:41.614 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 404 ms. 17-03-18 03:48:41.614 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 405 ms. 17-03-18 03:48:41.614 -07 000000579 INF: Camera: CopyActivePixFullImage start. 17-03-18 03:48:41.624 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-18 03:48:41.624 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-18 03:48:41.624 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 528 ms. 17-03-18 03:48:41.634 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 422 ms. 17-03-18 03:48:41.634 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP 1336 17-03-18 03:48:41.634 -07 000000579 INF: FPGA: Recv CAMDBLSNAP 17-03-18 03:48:41.634 -07 000000579 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-18 03:48:41.634 -07 000000610 INF: FPGA: 'CAMDBLSNAP 411 411 198 198 36858 150' command took 2 ms to send, 1684 ms to get response, and 1690 ms overall 17-03-18 03:48:41.634 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 116. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1683, R2=1752, Total=3435. Warn if over 250 bubbles per interval. 17-03-18 03:48:41.634 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880 17-03-18 03:48:41.634 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 13 at Y-position 69.0263671875, Z-Position -0.167926763981584. ------ 17-03-18 03:48:41.634 -07 000000579 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-18 03:48:41.644 -07 000000626 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.8726 mm, moving Z to -0.17425 mm 17-03-18 03:48:41.644 -07 000000626 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move 17-03-18 03:48:42.324 -07 000000590 INF: FPGA: Recv FOCMRRCUR 17-03-18 03:48:42.324 -07 000000579 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 670 ms to get response, and 680 ms overall 17-03-18 03:48:42.324 -07 000000579 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror] 17-03-18 03:48:42.324 -07 000000590 INF: Y Motor: Entering MoveAbsStepped (target = 111796 steps, sync = True, waitForSettling = True) 17-03-18 03:48:42.324 -07 000000590 INF: Y Motor: Moving to 69.8726 mm, started at 69.0264 mm, delta = 0.8462 mm 17-03-18 03:48:42.334 -07 000000590 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 03:48:43.324 -07 000000382 INF: FPGA: Recv YRDPOS 141367 17-03-18 03:48:43.324 -07 000000382 INF: FPGA: Recv FOCMRRFOC 17-03-18 03:48:43.324 -07 000000590 INF: FPGA: 'YRDPOS' command took 0 ms to send, 980 ms to get response, and 996 ms overall 17-03-18 03:48:43.324 -07 000000590 INF: Y Motor: Encoder = 141367 = motor step 110443.0 = 69.0269 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 03:48:43.324 -07 000000579 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 990 ms to get response, and 998 ms overall 17-03-18 03:48:43.324 -07 000000382 INF: Z Motor: Entering MoveAbsStepped (DAC = 38066, sync = True, waitForSettling = False) 17-03-18 03:48:43.324 -07 000000382 INF: Z Motor: Moving to -0.174255 mm, started at -0.167927 mm, distance = -6.33 um 17-03-18 03:48:43.324 -07 000000382 INF: FPGA: Xmit ZDACW 38066\n [Z Motor] 17-03-18 03:48:43.324 -07 000000590 INF: Y Motor: Last commanded position = 69.0426 mm (110468.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True 17-03-18 03:48:43.324 -07 000000590 INF: Y Motor: Moving 1353 steps-33 17-03-18 03:48:43.324 -07 000000579 INF: FPGA: Recv ZDACW 17-03-18 03:48:43.334 -07 000000382 INF: FPGA: 'ZDACW 38066' command took 0 ms to send, 0 ms to get response, and 7 ms overall 17-03-18 03:48:43.334 -07 000000382 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-18 03:48:43.334 -07 000000579 INF: FPGA: Recv ZDACR 38066 17-03-18 03:48:43.344 -07 000000590 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor] 17-03-18 03:48:43.344 -07 000000382 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:48:43.344 -07 000000382 INF: Z Motor: MoveAbsStepped took 18 ms (did NOT wait for settling yet)) 17-03-18 03:48:43.714 -07 000000579 INF: FPGA: Recv YMVTILE 17-03-18 03:48:43.714 -07 000000590 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 393 ms overall 17-03-18 03:48:43.764 -07 000000590 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 03:48:43.774 -07 000000461 INF: FPGA: Recv YRDPOS 143078 17-03-18 03:48:43.774 -07 000000590 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 5 ms overall 17-03-18 03:48:43.774 -07 000000590 INF: Y Motor: Encoder = 143078 = motor step 111779.7 = 69.8623 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 03:48:43.774 -07 000000590 INF: Y Motor: Position error before settling (table move) = -21 encoder counts (-0.010 mm) 17-03-18 03:48:43.774 -07 000000590 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 393 ms, distance = 0.846 mm, average velocity = 2.153 mm/sec 17-03-18 03:48:43.944 -07 000000474 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 117, FrontChillerTemperature: 3.986717, 17-03-18 03:48:44.724 -07 000000590 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 03:48:44.724 -07 000000569 INF: FPGA: Recv YRDPOS 143079 17-03-18 03:48:44.734 -07 000000590 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-18 03:48:44.734 -07 000000590 INF: Y Motor: Encoder = 143079 = motor step 111780.5 = 69.8628 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 03:48:44.754 -07 000000590 INF: Y Motor: After move to 69.872612, error = -0.009819, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm 17-03-18 03:48:44.754 -07 000000590 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 1 counts (0.000 mm) 17-03-18 03:48:44.754 -07 000000590 INF: Y Motor: Moved to 69.8628 after 2435 ms (table move) 17-03-18 03:48:44.764 -07 000000626 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174255 mm (DAC = 38066) 17-03-18 03:48:44.764 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:48:44.764 -07 000000382 INF: FPGA: Recv ZSGSRD 36421 17-03-18 03:48:44.774 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall 17-03-18 03:48:44.774 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:48:44.774 -07 000000382 INF: FPGA: Recv ZSGSRD 36417 17-03-18 03:48:44.784 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:48:44.784 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:48:44.784 -07 000000474 INF: FPGA: Recv ZSGSRD 36416 17-03-18 03:48:44.794 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:48:44.794 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:48:44.794 -07 000000579 INF: FPGA: Recv ZSGSRD 36416 17-03-18 03:48:44.804 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:48:44.804 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:48:44.804 -07 000000438 INF: FPGA: Recv ZSGSRD 36412 17-03-18 03:48:44.814 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:48:44.814 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:48:44.814 -07 000000569 INF: FPGA: Recv ZSGSRD 36419 17-03-18 03:48:44.824 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:48:44.824 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:48:44.824 -07 000000438 INF: FPGA: Recv ZSGSRD 36414 17-03-18 03:48:44.834 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:48:44.834 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:48:44.834 -07 000000382 INF: FPGA: Recv ZSGSRD 36413 17-03-18 03:48:44.844 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:48:44.844 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:48:44.844 -07 000000438 INF: FPGA: Recv ZSGSRD 36416 17-03-18 03:48:44.854 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:48:44.854 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:48:44.854 -07 000000569 INF: FPGA: Recv ZSGSRD 36417 17-03-18 03:48:44.864 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:48:44.864 -07 000000626 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-18 03:48:44.864 -07 000000438 INF: FPGA: Recv ZPIEZORD 32486 17-03-18 03:48:44.874 -07 000000626 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:48:44.874 -07 000000626 INF: Z Motor: Piezo is near 49.4 V (nominally 0 to 100 V), expect near 58.1 V, since DAC is at 5.808 V. Piezo Error = -8.7 V. 17-03-18 03:48:44.874 -07 000000626 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.3 um, Read 10 ADC samples: Avg = 36416 (-173.4 uncal um), Error = 0.9 uncal um, Median = 36416 (-173.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 36412 (-173.4 uncal um), Max = 36421 (-173.4 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um) 17-03-18 03:48:44.874 -07 000000626 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36416, posNoise = 5, negNoise = 4 17-03-18 03:48:44.874 -07 000000626 INF: Z Motor: After move to -0.174255, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-18 03:48:44.874 -07 000000626 INF: Z Motor: Settle wait time = 1440 ms, measure time = 108 ms (allowed 150 ms), total time = 1548 ms 17-03-18 03:48:44.874 -07 000000626 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms 17-03-18 03:48:44.924 -07 000000626 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 3279 ms 17-03-18 03:48:44.924 -07 000000626 INF: Y Motor: Restored settling times back to 3000 or 1100 ms 17-03-18 03:48:44.924 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-18 03:48:44.924 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-18 03:48:44.924 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-18 03:48:44.924 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-18 03:48:44.924 -07 000000438 INF: Disarm and arm camera sensor 0: ROITrigger start. 17-03-18 03:48:44.924 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-18 03:48:44.924 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-18 03:48:44.924 -07 000000438 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start. 17-03-18 03:48:44.934 -07 000000438 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms. 17-03-18 03:48:44.934 -07 000000438 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start. 17-03-18 03:48:44.944 -07 000000438 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms. 17-03-18 03:48:44.944 -07 000000438 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms. 17-03-18 03:48:44.944 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera] 17-03-18 03:48:44.984 -07 000000461 INF: FPGA: Recv @CAMSNAP turning led on 40 17-03-18 03:48:45.284 -07 000000569 INF: FPGA: Recv @CAMSNAP img rdy 340 17-03-18 03:48:45.284 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340 17-03-18 03:48:45.284 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start. 17-03-18 03:48:45.294 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2217851984, 0x0, 559484976) start. 17-03-18 03:48:45.324 -07 000000626 INF: FPGA: Recv @CAMSNAP 380 17-03-18 03:48:45.324 -07 000000590 INF: FPGA: Recv CAMSNAP 17-03-18 03:48:45.324 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 378 ms to get response, and 384 ms overall 17-03-18 03:48:45.414 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2217851984, 0x0, 559484976) end. Duration was 127 ms. 17-03-18 03:48:45.414 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-18 03:48:45.414 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms. 17-03-18 03:48:45.414 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms. 17-03-18 03:48:45.524 -07 000000474 INF: Autofocus start 17-03-18 03:48:45.524 -07 000000474 INF: MeasureProfile start 17-03-18 03:48:45.524 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-18 03:48:45.524 -07 000000438 INF: FPGA: Recv FOCMRRCUR 17-03-18 03:48:45.534 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall 17-03-18 03:48:45.534 -07 000000569 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror] 17-03-18 03:48:45.534 -07 000000474 INF: MeasureProfile done 17-03-18 03:48:45.534 -07 000000474 INF: X=32 Z correction [um]=0.09220707 17-03-18 03:48:45.534 -07 000000474 INF: Autofocus finished 17-03-18 03:48:45.734 -07 000000626 INF: FPGA: Recv FOCMRRIMG 17-03-18 03:48:45.734 -07 000000569 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall 17-03-18 03:48:45.734 -07 000000610 INF: ------------ Scan Snapping tile 13 at Y-position 69.86279296875, Z-position -0.174267461365502. ---------- 17-03-18 03:48:45.734 -07 000000610 INF: Cycle 117 Tile 13 Exposure Settings A 411 G 198 T 198 C 411 17-03-18 03:48:45.744 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36598, sync = True, waitForSettling = True) 17-03-18 03:48:45.744 -07 000000610 INF: Z Motor: Moving to -0.167535 mm, started at -0.174267 mm, distance = 6.73 um 17-03-18 03:48:45.744 -07 000000610 INF: FPGA: Xmit ZDACW 36598\n [Z Motor] 17-03-18 03:48:45.744 -07 000000438 INF: FPGA: Recv ZDACW 17-03-18 03:48:45.754 -07 000000610 INF: FPGA: 'ZDACW 36598' command took 0 ms to send, 0 ms to get response, and 8 ms overall 17-03-18 03:48:45.754 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-18 03:48:45.754 -07 000000474 INF: FPGA: Recv ZDACR 36598 17-03-18 03:48:45.764 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:48:45.764 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-18 03:48:45.914 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:48:45.914 -07 000000438 INF: FPGA: Recv ZSGSRD 35376 17-03-18 03:48:45.924 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-18 03:48:45.924 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:48:45.924 -07 000000579 INF: FPGA: Recv ZSGSRD 35371 17-03-18 03:48:45.934 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:48:45.934 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:48:45.934 -07 000000626 INF: FPGA: Recv ZSGSRD 35367 17-03-18 03:48:45.944 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:48:45.944 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:48:45.944 -07 000000382 INF: FPGA: Recv ZSGSRD 35365 17-03-18 03:48:45.954 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:48:45.954 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:48:45.954 -07 000000438 INF: FPGA: Recv ZSGSRD 35370 17-03-18 03:48:45.964 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:48:45.964 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:48:45.964 -07 000000590 INF: FPGA: Recv ZSGSRD 35375 17-03-18 03:48:45.974 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:48:45.974 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:48:45.974 -07 000000461 INF: FPGA: Recv ZSGSRD 35370 17-03-18 03:48:45.984 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:48:45.984 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:48:45.984 -07 000000474 INF: FPGA: Recv ZSGSRD 35372 17-03-18 03:48:45.994 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:48:45.994 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:48:45.994 -07 000000626 INF: FPGA: Recv ZSGSRD 35369 17-03-18 03:48:46.004 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:48:46.004 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:48:46.004 -07 000000382 INF: FPGA: Recv ZSGSRD 35372 17-03-18 03:48:46.014 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:48:46.014 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-18 03:48:46.014 -07 000000438 INF: FPGA: Recv ZPIEZORD 31076 17-03-18 03:48:46.024 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:48:46.024 -07 000000610 INF: Z Motor: Piezo is near 46.4 V (nominally 0 to 100 V), expect near 55.8 V, since DAC is at 5.584 V. Piezo Error = -9.5 V. 17-03-18 03:48:46.024 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.5 um, Read 10 ADC samples: Avg = 35371 (-166.7 uncal um), Error = 0.8 uncal um, Median = 35370 (-166.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35365 (-166.6 uncal um), Max = 35376 (-166.7 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um) 17-03-18 03:48:46.024 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35371, posNoise = 5, negNoise = 6 17-03-18 03:48:46.024 -07 000000610 INF: Z Motor: After move to -0.167535, error = -0.000019, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-18 03:48:46.024 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms) 17-03-18 03:48:46.024 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-18 03:48:46.024 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-18 03:48:46.024 -07 000000474 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-18 03:48:46.024 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-18 03:48:46.024 -07 000000438 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start. 17-03-18 03:48:46.024 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start. 17-03-18 03:48:46.024 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074704) start. 17-03-18 03:48:46.024 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-18 03:48:46.024 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms. 17-03-18 03:48:46.024 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start. 17-03-18 03:48:46.024 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-18 03:48:46.024 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start. 17-03-18 03:48:46.034 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms. 17-03-18 03:48:46.034 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start. 17-03-18 03:48:46.034 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms. 17-03-18 03:48:46.034 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start. 17-03-18 03:48:46.044 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms. 17-03-18 03:48:46.044 -07 000000438 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 24 ms. 17-03-18 03:48:46.044 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms. 17-03-18 03:48:46.054 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 24 ms. 17-03-18 03:48:46.054 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 411 411 198 198 36775 150\n [Camera] 17-03-18 03:48:46.254 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning red on 192 17-03-18 03:48:46.604 -07 000000569 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-18 03:48:46.614 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 116. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1683, R2=1752, Total=3435. Warn if over 250 bubbles per interval. 17-03-18 03:48:46.664 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 603 17-03-18 03:48:46.664 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 603 17-03-18 03:48:46.664 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-18 03:48:46.664 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-18 03:48:46.664 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start. 17-03-18 03:48:46.664 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 603 17-03-18 03:48:46.664 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 603 17-03-18 03:48:46.664 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-18 03:48:46.664 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-18 03:48:46.664 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start. 17-03-18 03:48:46.854 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36775 796 17-03-18 03:48:47.004 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning grn on 946 17-03-18 03:48:47.054 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 391 ms. 17-03-18 03:48:47.054 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms. 17-03-18 03:48:47.054 -07 000000438 INF: Camera: CopyActivePixFullImage start. 17-03-18 03:48:47.054 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 390 ms. 17-03-18 03:48:47.054 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 391 ms. 17-03-18 03:48:47.054 -07 000000626 INF: Camera: CopyActivePixFullImage start. 17-03-18 03:48:47.054 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-18 03:48:47.054 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 395 ms. 17-03-18 03:48:47.064 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-18 03:48:47.064 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 401 ms. 17-03-18 03:48:47.204 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1144 17-03-18 03:48:47.204 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1144 17-03-18 03:48:47.204 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-18 03:48:47.204 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1144 17-03-18 03:48:47.204 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1144 17-03-18 03:48:47.204 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-18 03:48:47.214 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-18 03:48:47.214 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start. 17-03-18 03:48:47.214 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-18 03:48:47.214 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 2165554656, 0x0, 418435064) start. 17-03-18 03:48:47.394 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP 1337 17-03-18 03:48:47.394 -07 000000569 INF: FPGA: Recv CAMDBLSNAP 17-03-18 03:48:47.394 -07 000000610 INF: FPGA: 'CAMDBLSNAP 411 411 198 198 36775 150' command took 2 ms to send, 1335 ms to get response, and 1343 ms overall 17-03-18 03:48:47.394 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880 17-03-18 03:48:47.394 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 14 at Y-position 69.86279296875, Z-Position -0.167554159677362. ------ 17-03-18 03:48:47.404 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-18 03:48:47.584 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 2165554656, 0x0, 418435064) end. Duration was 370 ms. 17-03-18 03:48:47.584 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 370 ms. 17-03-18 03:48:47.584 -07 000000438 INF: Camera: CopyActivePixFullImage start. 17-03-18 03:48:47.584 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-18 03:48:47.594 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 377 ms. 17-03-18 03:48:47.594 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms. 17-03-18 03:48:47.594 -07 000000626 INF: Camera: CopyActivePixFullImage start. 17-03-18 03:48:47.594 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-18 03:48:47.594 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 390 ms. 17-03-18 03:48:47.594 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms. 17-03-18 03:48:47.604 -07 000000626 INF: Y Motor: MoveYZ optimized starting. Moving Y to 70.7026 mm, moving Z to -0.17348 mm 17-03-18 03:48:47.604 -07 000000626 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move 17-03-18 03:48:47.604 -07 000000438 INF: FPGA: Recv FOCMRRCUR 17-03-18 03:48:47.604 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 197 ms to get response, and 207 ms overall 17-03-18 03:48:47.604 -07 000000569 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror] 17-03-18 03:48:47.614 -07 000000438 INF: Y Motor: Entering MoveAbsStepped (target = 113124 steps, sync = True, waitForSettling = True) 17-03-18 03:48:47.614 -07 000000438 INF: Y Motor: Moving to 70.7026 mm, started at 69.8628 mm, delta = 0.8398 mm 17-03-18 03:48:47.624 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 03:48:48.324 -07 000000444 INF: Z Motor: Entering MoveAbsStepped (DAC = 37897, sync = True, waitForSettling = False) 17-03-18 03:48:48.324 -07 000000444 INF: Z Motor: Moving to -0.173481 mm, started at -0.167554 mm, distance = -5.93 um 17-03-18 03:48:48.324 -07 000000444 INF: FPGA: Xmit ZDACW 37897\n [Z Motor] 17-03-18 03:48:49.324 -07 000000501 INF: FPGA: Recv YRDPOS 143079 17-03-18 03:48:49.324 -07 000000501 INF: FPGA: Recv FOCMRRFOC 17-03-18 03:48:49.324 -07 000000501 INF: FPGA: Recv ZDACW 17-03-18 03:48:49.324 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1690 ms to get response, and 1709 ms overall 17-03-18 03:48:49.324 -07 000000438 INF: Y Motor: Encoder = 143079 = motor step 111780.5 = 69.8628 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 03:48:49.324 -07 000000438 INF: Y Motor: Last commanded position = 69.8726 mm (111796.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True 17-03-18 03:48:49.324 -07 000000438 INF: Y Motor: Moving 1344 steps-21 17-03-18 03:48:49.324 -07 000000438 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor] 17-03-18 03:48:49.324 -07 000000444 INF: FPGA: 'ZDACW 37897' command took 0 ms to send, 991 ms to get response, and 999 ms overall 17-03-18 03:48:49.324 -07 000000569 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 1701 ms to get response, and 1711 ms overall 17-03-18 03:48:49.334 -07 000000444 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-18 03:48:49.334 -07 000000569 INF: FPGA: Recv ZDACR 37897 17-03-18 03:48:49.344 -07 000000444 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 17 ms overall 17-03-18 03:48:49.344 -07 000000444 INF: Z Motor: MoveAbsStepped took 1018 ms (did NOT wait for settling yet)) 17-03-18 03:48:49.634 -07 000000606 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 117, FrontChillerTemperature: 4.001704, 17-03-18 03:48:49.704 -07 000000461 INF: FPGA: Recv YMVTILE 17-03-18 03:48:49.704 -07 000000438 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 370 ms to get response, and 378 ms overall 17-03-18 03:48:49.744 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 03:48:49.744 -07 000000606 INF: FPGA: Recv YRDPOS 144769 17-03-18 03:48:49.754 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall 17-03-18 03:48:49.754 -07 000000438 INF: Y Motor: Encoder = 144769 = motor step 113100.8 = 70.6880 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 03:48:49.754 -07 000000438 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm) 17-03-18 03:48:49.754 -07 000000438 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 378 ms, distance = 0.840 mm, average velocity = 2.222 mm/sec 17-03-18 03:48:50.704 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 03:48:50.704 -07 000000444 INF: FPGA: Recv YRDPOS 144769 17-03-18 03:48:50.714 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-18 03:48:50.714 -07 000000438 INF: Y Motor: Encoder = 144769 = motor step 113100.8 = 70.6880 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 03:48:50.744 -07 000000438 INF: Y Motor: After move to 70.702606, error = -0.014618, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm 17-03-18 03:48:50.744 -07 000000438 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm) 17-03-18 03:48:50.744 -07 000000438 INF: Y Motor: Moved to 70.6880 after 3129 ms (table move) 17-03-18 03:48:50.744 -07 000000626 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173481 mm (DAC = 37897) 17-03-18 03:48:50.744 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:48:50.744 -07 000000424 INF: FPGA: Recv ZSGSRD 36297 17-03-18 03:48:50.754 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall 17-03-18 03:48:50.754 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:48:50.754 -07 000000438 INF: FPGA: Recv ZSGSRD 36289 17-03-18 03:48:50.764 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:48:50.764 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:48:50.764 -07 000000382 INF: FPGA: Recv ZSGSRD 36294 17-03-18 03:48:50.774 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:48:50.774 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:48:50.774 -07 000000474 INF: FPGA: Recv ZSGSRD 36293 17-03-18 03:48:50.784 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:48:50.784 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:48:50.784 -07 000000606 INF: FPGA: Recv ZSGSRD 36287 17-03-18 03:48:50.794 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:48:50.794 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:48:50.794 -07 000000581 INF: FPGA: Recv ZSGSRD 36293 17-03-18 03:48:50.804 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-18 03:48:50.804 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:48:50.804 -07 000000474 INF: FPGA: Recv ZSGSRD 36300 17-03-18 03:48:50.814 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:48:50.814 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:48:50.814 -07 000000455 INF: FPGA: Recv ZSGSRD 36296 17-03-18 03:48:50.824 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:48:50.824 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:48:50.824 -07 000000501 INF: FPGA: Recv ZSGSRD 36294 17-03-18 03:48:50.834 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:48:50.834 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:48:50.834 -07 000000424 INF: FPGA: Recv ZSGSRD 36293 17-03-18 03:48:50.844 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:48:50.844 -07 000000626 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-18 03:48:50.844 -07 000000579 INF: FPGA: Recv ZPIEZORD 32334 17-03-18 03:48:50.854 -07 000000626 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:48:50.854 -07 000000626 INF: Z Motor: Piezo is near 49.1 V (nominally 0 to 100 V), expect near 57.8 V, since DAC is at 5.783 V. Piezo Error = -8.8 V. 17-03-18 03:48:50.854 -07 000000626 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.5 um, Read 10 ADC samples: Avg = 36294 (-172.6 uncal um), Error = 0.9 uncal um, Median = 36294 (-172.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 36287 (-172.6 uncal um), Max = 36300 (-172.6 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um) 17-03-18 03:48:50.854 -07 000000626 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36294, posNoise = 6, negNoise = 7 17-03-18 03:48:50.854 -07 000000626 INF: Z Motor: After move to -0.173481, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-18 03:48:50.854 -07 000000626 INF: Z Motor: Settle wait time = 2423 ms, measure time = 106 ms (allowed 150 ms), total time = 2529 ms 17-03-18 03:48:50.854 -07 000000626 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms 17-03-18 03:48:50.904 -07 000000626 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 3293 ms 17-03-18 03:48:50.904 -07 000000626 INF: Y Motor: Restored settling times back to 3000 or 1100 ms 17-03-18 03:48:50.904 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-18 03:48:50.904 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-18 03:48:50.904 -07 000000461 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-18 03:48:50.904 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger start. 17-03-18 03:48:50.904 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-18 03:48:50.904 -07 000000581 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-18 03:48:50.904 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-18 03:48:50.904 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start. 17-03-18 03:48:50.914 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms. 17-03-18 03:48:50.914 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start. 17-03-18 03:48:50.924 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 9 ms. 17-03-18 03:48:50.924 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 14 ms. 17-03-18 03:48:50.924 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera] 17-03-18 03:48:50.974 -07 000000382 INF: FPGA: Recv @CAMSNAP turning led on 40 17-03-18 03:48:51.264 -07 000000581 INF: FPGA: Recv @CAMSNAP img rdy 340 17-03-18 03:48:51.264 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340 17-03-18 03:48:51.264 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start. 17-03-18 03:48:51.274 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2217851984, 0x0, 559484976) start. 17-03-18 03:48:51.304 -07 000000561 INF: FPGA: Recv @CAMSNAP 380 17-03-18 03:48:51.304 -07 000000501 INF: FPGA: Recv CAMSNAP 17-03-18 03:48:51.304 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 379 ms to get response, and 384 ms overall 17-03-18 03:48:51.394 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2217851984, 0x0, 559484976) end. Duration was 127 ms. 17-03-18 03:48:51.394 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-18 03:48:51.394 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms. 17-03-18 03:48:51.394 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms. 17-03-18 03:48:51.504 -07 000000579 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-18 03:48:51.504 -07 000000455 INF: Autofocus start 17-03-18 03:48:51.504 -07 000000455 INF: MeasureProfile start 17-03-18 03:48:51.504 -07 000000382 INF: FPGA: Recv FOCMRRCUR 17-03-18 03:48:51.514 -07 000000579 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall 17-03-18 03:48:51.514 -07 000000579 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror] 17-03-18 03:48:51.514 -07 000000455 INF: MeasureProfile done 17-03-18 03:48:51.514 -07 000000455 INF: X=144 Z correction [um]=0.6646646 17-03-18 03:48:51.514 -07 000000455 INF: Autofocus finished 17-03-18 03:48:51.604 -07 000000455 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-18 03:48:51.614 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 116. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1683, R2=1752, Total=3435. Warn if over 250 bubbles per interval. 17-03-18 03:48:51.714 -07 000000424 INF: FPGA: Recv FOCMRRIMG 17-03-18 03:48:51.714 -07 000000579 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 204 ms overall 17-03-18 03:48:51.714 -07 000000610 INF: ------------ Scan Snapping tile 14 at Y-position 70.68798828125, Z-position -0.173483707484207. ---------- 17-03-18 03:48:51.724 -07 000000610 INF: Cycle 117 Tile 14 Exposure Settings A 411 G 198 T 198 C 411 17-03-18 03:48:51.724 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36554, sync = True, waitForSettling = True) 17-03-18 03:48:51.724 -07 000000610 INF: Z Motor: Moving to -0.167333 mm, started at -0.173484 mm, distance = 6.15 um 17-03-18 03:48:51.724 -07 000000610 INF: FPGA: Xmit ZDACW 36554\n [Z Motor] 17-03-18 03:48:51.724 -07 000000438 INF: FPGA: Recv ZDACW 17-03-18 03:48:51.734 -07 000000610 INF: FPGA: 'ZDACW 36554' command took 0 ms to send, 0 ms to get response, and 7 ms overall 17-03-18 03:48:51.734 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-18 03:48:51.734 -07 000000561 INF: FPGA: Recv ZDACR 36554 17-03-18 03:48:51.744 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:48:51.744 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-18 03:48:51.894 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:48:51.894 -07 000000626 INF: FPGA: Recv ZSGSRD 35334 17-03-18 03:48:51.904 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-18 03:48:51.904 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:48:51.904 -07 000000581 INF: FPGA: Recv ZSGSRD 35338 17-03-18 03:48:51.914 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:48:51.914 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:48:51.914 -07 000000579 INF: FPGA: Recv ZSGSRD 35336 17-03-18 03:48:51.924 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:48:51.924 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:48:51.924 -07 000000438 INF: FPGA: Recv ZSGSRD 35333 17-03-18 03:48:51.934 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:48:51.934 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:48:51.934 -07 000000581 INF: FPGA: Recv ZSGSRD 35341 17-03-18 03:48:51.944 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:48:51.944 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:48:51.944 -07 000000455 INF: FPGA: Recv ZSGSRD 35342 17-03-18 03:48:51.954 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:48:51.954 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:48:51.954 -07 000000561 INF: FPGA: Recv ZSGSRD 35338 17-03-18 03:48:51.964 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:48:51.964 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:48:51.964 -07 000000461 INF: FPGA: Recv ZSGSRD 35338 17-03-18 03:48:51.974 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:48:51.974 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:48:51.974 -07 000000474 INF: FPGA: Recv ZSGSRD 35335 17-03-18 03:48:51.984 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:48:51.984 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:48:51.984 -07 000000455 INF: FPGA: Recv ZSGSRD 35339 17-03-18 03:48:51.994 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:48:51.994 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-18 03:48:51.994 -07 000000569 INF: FPGA: Recv ZPIEZORD 31036 17-03-18 03:48:52.004 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:48:52.004 -07 000000610 INF: Z Motor: Piezo is near 46.3 V (nominally 0 to 100 V), expect near 55.8 V, since DAC is at 5.578 V. Piezo Error = -9.5 V. 17-03-18 03:48:52.004 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.3 um, Read 10 ADC samples: Avg = 35337 (-166.5 uncal um), Error = 0.9 uncal um, Median = 35338 (-166.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35333 (-166.4 uncal um), Max = 35342 (-166.5 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um) 17-03-18 03:48:52.004 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35337, posNoise = 5, negNoise = 4 17-03-18 03:48:52.004 -07 000000610 INF: Z Motor: After move to -0.167333, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-18 03:48:52.004 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms) 17-03-18 03:48:52.004 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-18 03:48:52.004 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-18 03:48:52.004 -07 000000444 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-18 03:48:52.004 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-18 03:48:52.004 -07 000000455 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start. 17-03-18 03:48:52.004 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-18 03:48:52.004 -07 000000606 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start. 17-03-18 03:48:52.004 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074704) start. 17-03-18 03:48:52.004 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms. 17-03-18 03:48:52.004 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start. 17-03-18 03:48:52.004 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-18 03:48:52.004 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start. 17-03-18 03:48:52.014 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms. 17-03-18 03:48:52.014 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start. 17-03-18 03:48:52.014 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms. 17-03-18 03:48:52.014 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start. 17-03-18 03:48:52.024 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms. 17-03-18 03:48:52.024 -07 000000606 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms. 17-03-18 03:48:52.024 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms. 17-03-18 03:48:52.024 -07 000000455 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms. 17-03-18 03:48:52.024 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 411 411 198 198 36731 150\n [Camera] 17-03-18 03:48:52.224 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP turning red on 192 17-03-18 03:48:52.644 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 603 17-03-18 03:48:52.644 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 603 17-03-18 03:48:52.644 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-18 03:48:52.644 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-18 03:48:52.644 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start. 17-03-18 03:48:52.644 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 603 17-03-18 03:48:52.644 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 603 17-03-18 03:48:52.644 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-18 03:48:52.644 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-18 03:48:52.644 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start. 17-03-18 03:48:52.944 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36731 796 17-03-18 03:48:52.984 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP turning grn on 946 17-03-18 03:48:53.034 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 392 ms. 17-03-18 03:48:53.034 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 392 ms. 17-03-18 03:48:53.034 -07 000000606 INF: Camera: CopyActivePixFullImage start. 17-03-18 03:48:53.034 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 392 ms. 17-03-18 03:48:53.034 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 392 ms. 17-03-18 03:48:53.034 -07 000000561 INF: Camera: CopyActivePixFullImage start. 17-03-18 03:48:53.034 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-18 03:48:53.034 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 398 ms. 17-03-18 03:48:53.044 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-18 03:48:53.044 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 405 ms. 17-03-18 03:48:53.184 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1144 17-03-18 03:48:53.184 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1144 17-03-18 03:48:53.184 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-18 03:48:53.184 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1144 17-03-18 03:48:53.184 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1144 17-03-18 03:48:53.184 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-18 03:48:53.184 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-18 03:48:53.184 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start. 17-03-18 03:48:53.194 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-18 03:48:53.194 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 2165554656, 0x0, 418435064) start. 17-03-18 03:48:53.374 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP 1339 17-03-18 03:48:53.374 -07 000000561 INF: FPGA: Recv CAMDBLSNAP 17-03-18 03:48:53.374 -07 000000610 INF: FPGA: 'CAMDBLSNAP 411 411 198 198 36731 150' command took 2 ms to send, 1335 ms to get response, and 1346 ms overall 17-03-18 03:48:53.374 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880 17-03-18 03:48:53.374 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 15 at Y-position 70.68798828125, Z-Position -0.167335736464542. ------ 17-03-18 03:48:53.384 -07 000000444 INF: Y Motor: MoveYZ optimized starting. Moving Y to 71.5326 mm, moving Z to -0.17406 mm 17-03-18 03:48:53.384 -07 000000444 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move 17-03-18 03:48:53.384 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-18 03:48:53.394 -07 000000561 INF: Y Motor: Entering MoveAbsStepped (target = 114452 steps, sync = True, waitForSettling = True) 17-03-18 03:48:53.394 -07 000000561 INF: Y Motor: Moving to 71.5326 mm, started at 70.6880 mm, delta = 0.8446 mm 17-03-18 03:48:53.394 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 03:48:53.564 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 2165554656, 0x0, 418435064) end. Duration was 375 ms. 17-03-18 03:48:53.564 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms. 17-03-18 03:48:53.564 -07 000000455 INF: Camera: CopyActivePixFullImage start. 17-03-18 03:48:53.564 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 377 ms. 17-03-18 03:48:53.564 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms. 17-03-18 03:48:53.564 -07 000000606 INF: Camera: CopyActivePixFullImage start. 17-03-18 03:48:53.574 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-18 03:48:53.574 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-18 03:48:53.574 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 390 ms. 17-03-18 03:48:53.574 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms. 17-03-18 03:48:53.584 -07 000000606 INF: Z Motor: Entering MoveAbsStepped (DAC = 38024, sync = True, waitForSettling = False) 17-03-18 03:48:53.584 -07 000000606 INF: Z Motor: Moving to -0.174063 mm, started at -0.167336 mm, distance = -6.73 um 17-03-18 03:48:53.584 -07 000000606 INF: FPGA: Xmit ZDACW 38024\n [Z Motor] 17-03-18 03:48:53.584 -07 000000455 INF: FPGA: Recv FOCMRRCUR 17-03-18 03:48:53.584 -07 000000455 INF: FPGA: Recv YRDPOS 144769 17-03-18 03:48:53.584 -07 000000455 INF: FPGA: Recv ZDACW 17-03-18 03:48:53.584 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 188 ms to get response, and 196 ms overall 17-03-18 03:48:53.584 -07 000000561 INF: Y Motor: Encoder = 144769 = motor step 113100.8 = 70.6880 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 03:48:53.584 -07 000000561 INF: Y Motor: Last commanded position = 70.7026 mm (113124.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True 17-03-18 03:48:53.584 -07 000000561 INF: Y Motor: Moving 1351 steps-30 17-03-18 03:48:53.584 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 198 ms to get response, and 203 ms overall 17-03-18 03:48:53.594 -07 000000606 INF: FPGA: 'ZDACW 38024' command took 0 ms to send, 0 ms to get response, and 6 ms overall 17-03-18 03:48:53.594 -07 000000569 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror] 17-03-18 03:48:53.604 -07 000000606 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-18 03:48:53.604 -07 000000455 INF: FPGA: Recv ZDACR 38024 17-03-18 03:48:53.614 -07 000000561 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor] 17-03-18 03:48:53.614 -07 000000606 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall 17-03-18 03:48:53.614 -07 000000606 INF: Z Motor: MoveAbsStepped took 26 ms (did NOT wait for settling yet)) 17-03-18 03:48:53.794 -07 000000606 INF: FPGA: Recv FOCMRRFOC 17-03-18 03:48:53.794 -07 000000569 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 203 ms overall 17-03-18 03:48:53.994 -07 000000606 INF: FPGA: Recv YMVTILE 17-03-18 03:48:53.994 -07 000000561 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 370 ms to get response, and 401 ms overall 17-03-18 03:48:54.034 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 03:48:54.034 -07 000000569 INF: FPGA: Recv YRDPOS 146469 17-03-18 03:48:54.044 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall 17-03-18 03:48:54.044 -07 000000561 INF: Y Motor: Encoder = 146469 = motor step 114428.9 = 71.5181 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 03:48:54.044 -07 000000561 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm) 17-03-18 03:48:54.044 -07 000000561 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 401 ms, distance = 0.845 mm, average velocity = 2.106 mm/sec 17-03-18 03:48:54.994 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 03:48:54.994 -07 000000455 INF: FPGA: Recv YRDPOS 146470 17-03-18 03:48:55.004 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-18 03:48:55.004 -07 000000561 INF: Y Motor: Encoder = 146470 = motor step 114429.7 = 71.5186 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 03:48:55.014 -07 000000606 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 117, FrontChillerTemperature: 4.015368, 17-03-18 03:48:55.034 -07 000000561 INF: Y Motor: After move to 71.532608, error = -0.014053, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm 17-03-18 03:48:55.034 -07 000000561 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 1 counts (0.000 mm) 17-03-18 03:48:55.034 -07 000000561 INF: Y Motor: Moved to 71.5186 after 1641 ms (table move) 17-03-18 03:48:55.034 -07 000000444 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174063 mm (DAC = 38024) 17-03-18 03:48:55.054 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:48:55.054 -07 000000606 INF: FPGA: Recv ZSGSRD 36384 17-03-18 03:48:55.064 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 22 ms overall 17-03-18 03:48:55.064 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:48:55.064 -07 000000424 INF: FPGA: Recv ZSGSRD 36380 17-03-18 03:48:55.074 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:48:55.074 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:48:55.074 -07 000000581 INF: FPGA: Recv ZSGSRD 36386 17-03-18 03:48:55.084 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:48:55.084 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:48:55.084 -07 000000424 INF: FPGA: Recv ZSGSRD 36385 17-03-18 03:48:55.094 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:48:55.094 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:48:55.094 -07 000000569 INF: FPGA: Recv ZSGSRD 36385 17-03-18 03:48:55.104 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:48:55.104 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:48:55.104 -07 000000501 INF: FPGA: Recv ZSGSRD 36388 17-03-18 03:48:55.114 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:48:55.114 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:48:55.114 -07 000000424 INF: FPGA: Recv ZSGSRD 36381 17-03-18 03:48:55.124 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:48:55.124 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:48:55.124 -07 000000581 INF: FPGA: Recv ZSGSRD 36388 17-03-18 03:48:55.134 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:48:55.134 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:48:55.134 -07 000000424 INF: FPGA: Recv ZSGSRD 36392 17-03-18 03:48:55.144 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:48:55.144 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:48:55.144 -07 000000455 INF: FPGA: Recv ZSGSRD 36385 17-03-18 03:48:55.154 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:48:55.154 -07 000000444 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-18 03:48:55.154 -07 000000606 INF: FPGA: Recv ZPIEZORD 32435 17-03-18 03:48:55.164 -07 000000444 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:48:55.164 -07 000000444 INF: Z Motor: Piezo is near 49.3 V (nominally 0 to 100 V), expect near 58.0 V, since DAC is at 5.802 V. Piezo Error = -8.7 V. 17-03-18 03:48:55.164 -07 000000444 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.1 um, Read 10 ADC samples: Avg = 36385 (-173.2 uncal um), Error = 0.9 uncal um, Median = 36385 (-173.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 36380 (-173.2 uncal um), Max = 36392 (-173.2 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um) 17-03-18 03:48:55.164 -07 000000444 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36385, posNoise = 7, negNoise = 5 17-03-18 03:48:55.164 -07 000000444 INF: Z Motor: After move to -0.174063, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-18 03:48:55.164 -07 000000444 INF: Z Motor: Settle wait time = 1454 ms, measure time = 123 ms (allowed 150 ms), total time = 1577 ms 17-03-18 03:48:55.164 -07 000000444 INF: Z Motor: Waiting extra 27 ms after reading position to reach expected total of 150 ms 17-03-18 03:48:55.194 -07 000000444 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1805 ms 17-03-18 03:48:55.194 -07 000000444 INF: Y Motor: Restored settling times back to 3000 or 1100 ms 17-03-18 03:48:55.194 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-18 03:48:55.194 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-18 03:48:55.194 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-18 03:48:55.194 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-18 03:48:55.194 -07 000000606 INF: Disarm and arm camera sensor 0: ROITrigger start. 17-03-18 03:48:55.194 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-18 03:48:55.204 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-18 03:48:55.204 -07 000000606 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start. 17-03-18 03:48:55.204 -07 000000606 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms. 17-03-18 03:48:55.204 -07 000000606 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start. 17-03-18 03:48:55.214 -07 000000606 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms. 17-03-18 03:48:55.214 -07 000000606 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms. 17-03-18 03:48:55.214 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera] 17-03-18 03:48:55.264 -07 000000455 INF: FPGA: Recv @CAMSNAP turning led on 40 17-03-18 03:48:55.564 -07 000000561 INF: FPGA: Recv @CAMSNAP img rdy 340 17-03-18 03:48:55.564 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340 17-03-18 03:48:55.564 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start. 17-03-18 03:48:55.564 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2217851984, 0x0, 559484976) start. 17-03-18 03:48:55.604 -07 000000444 INF: FPGA: Recv @CAMSNAP 380 17-03-18 03:48:55.604 -07 000000569 INF: FPGA: Recv CAMSNAP 17-03-18 03:48:55.604 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 382 ms to get response, and 384 ms overall 17-03-18 03:48:55.694 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2217851984, 0x0, 559484976) end. Duration was 127 ms. 17-03-18 03:48:55.694 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-18 03:48:55.694 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms. 17-03-18 03:48:55.694 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms. 17-03-18 03:48:55.704 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-18 03:48:55.704 -07 000000606 INF: Autofocus start 17-03-18 03:48:55.704 -07 000000606 INF: MeasureProfile start 17-03-18 03:48:55.704 -07 000000581 INF: FPGA: Recv FOCMRRCUR 17-03-18 03:48:55.714 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall 17-03-18 03:48:55.714 -07 000000569 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror] 17-03-18 03:48:55.714 -07 000000606 INF: MeasureProfile done 17-03-18 03:48:55.714 -07 000000606 INF: X=-16 Z correction [um]=-0.1496812 17-03-18 03:48:55.714 -07 000000606 INF: Autofocus finished 17-03-18 03:48:55.914 -07 000000455 INF: FPGA: Recv FOCMRRIMG 17-03-18 03:48:55.914 -07 000000569 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 195 ms to get response, and 205 ms overall 17-03-18 03:48:55.924 -07 000000610 INF: ------------ Scan Snapping tile 15 at Y-position 71.5185546875, Z-position -0.174068310789107. ---------- 17-03-18 03:48:55.924 -07 000000610 INF: Cycle 117 Tile 15 Exposure Settings A 411 G 198 T 198 C 411 17-03-18 03:48:55.924 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36504, sync = True, waitForSettling = True) 17-03-18 03:48:55.924 -07 000000610 INF: Z Motor: Moving to -0.167105 mm, started at -0.174068 mm, distance = 6.96 um 17-03-18 03:48:55.924 -07 000000610 INF: FPGA: Xmit ZDACW 36504\n [Z Motor] 17-03-18 03:48:55.924 -07 000000444 INF: FPGA: Recv ZDACW 17-03-18 03:48:55.934 -07 000000610 INF: FPGA: 'ZDACW 36504' command took 0 ms to send, 0 ms to get response, and 4 ms overall 17-03-18 03:48:55.934 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-18 03:48:55.934 -07 000000474 INF: FPGA: Recv ZDACR 36504 17-03-18 03:48:55.944 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:48:55.944 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-18 03:48:56.094 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:48:56.094 -07 000000444 INF: FPGA: Recv ZSGSRD 35305 17-03-18 03:48:56.104 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-18 03:48:56.104 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:48:56.104 -07 000000561 INF: FPGA: Recv ZSGSRD 35299 17-03-18 03:48:56.114 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:48:56.114 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:48:56.114 -07 000000444 INF: FPGA: Recv ZSGSRD 35302 17-03-18 03:48:56.124 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:48:56.124 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:48:56.124 -07 000000561 INF: FPGA: Recv ZSGSRD 35304 17-03-18 03:48:56.134 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:48:56.134 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:48:56.134 -07 000000444 INF: FPGA: Recv ZSGSRD 35298 17-03-18 03:48:56.144 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:48:56.144 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:48:56.144 -07 000000474 INF: FPGA: Recv ZSGSRD 35306 17-03-18 03:48:56.154 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:48:56.154 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:48:56.154 -07 000000455 INF: FPGA: Recv ZSGSRD 35299 17-03-18 03:48:56.164 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:48:56.164 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:48:56.164 -07 000000424 INF: FPGA: Recv ZSGSRD 35300 17-03-18 03:48:56.174 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:48:56.174 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:48:56.174 -07 000000561 INF: FPGA: Recv ZSGSRD 35303 17-03-18 03:48:56.184 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:48:56.184 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:48:56.184 -07 000000581 INF: FPGA: Recv ZSGSRD 35302 17-03-18 03:48:56.194 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:48:56.194 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-18 03:48:56.194 -07 000000561 INF: FPGA: Recv ZPIEZORD 30974 17-03-18 03:48:56.204 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:48:56.204 -07 000000610 INF: Z Motor: Piezo is near 46.2 V (nominally 0 to 100 V), expect near 55.7 V, since DAC is at 5.570 V. Piezo Error = -9.5 V. 17-03-18 03:48:56.204 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.1 um, Read 10 ADC samples: Avg = 35302 (-166.2 uncal um), Error = 0.9 uncal um, Median = 35302 (-166.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35298 (-166.2 uncal um), Max = 35306 (-166.3 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um) 17-03-18 03:48:56.204 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35302, posNoise = 4, negNoise = 4 17-03-18 03:48:56.204 -07 000000610 INF: Z Motor: After move to -0.167105, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-18 03:48:56.204 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms) 17-03-18 03:48:56.204 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-18 03:48:56.204 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-18 03:48:56.204 -07 000000455 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-18 03:48:56.204 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-18 03:48:56.204 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start. 17-03-18 03:48:56.204 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) start. 17-03-18 03:48:56.204 -07 000000444 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start. 17-03-18 03:48:56.204 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-18 03:48:56.204 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms. 17-03-18 03:48:56.204 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start. 17-03-18 03:48:56.204 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-18 03:48:56.204 -07 000000444 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start. 17-03-18 03:48:56.214 -07 000000444 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms. 17-03-18 03:48:56.214 -07 000000444 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start. 17-03-18 03:48:56.214 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms. 17-03-18 03:48:56.214 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start. 17-03-18 03:48:56.224 -07 000000444 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms. 17-03-18 03:48:56.224 -07 000000444 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms. 17-03-18 03:48:56.224 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms. 17-03-18 03:48:56.224 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms. 17-03-18 03:48:56.234 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 411 411 198 198 36681 150\n [Camera] 17-03-18 03:48:56.434 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP turning red on 192 17-03-18 03:48:56.614 -07 000000424 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-18 03:48:56.614 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 116. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1683, R2=1752, Total=3435. Warn if over 250 bubbles per interval. 17-03-18 03:48:56.844 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 603 17-03-18 03:48:56.844 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 603 17-03-18 03:48:56.844 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-18 03:48:56.844 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 603 17-03-18 03:48:56.844 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 603 17-03-18 03:48:56.844 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-18 03:48:56.844 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) start. 17-03-18 03:48:56.844 -07 000000474 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-18 03:48:56.844 -07 000000474 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-18 03:48:56.844 -07 000000474 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start. 17-03-18 03:48:57.034 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36681 796 17-03-18 03:48:57.184 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP turning grn on 946 17-03-18 03:48:57.244 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) end. Duration was 400 ms. 17-03-18 03:48:57.244 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms. 17-03-18 03:48:57.244 -07 000000444 INF: Camera: CopyActivePixFullImage start. 17-03-18 03:48:57.244 -07 000000474 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 400 ms. 17-03-18 03:48:57.244 -07 000000474 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms. 17-03-18 03:48:57.244 -07 000000474 INF: Camera: CopyActivePixFullImage start. 17-03-18 03:48:57.254 -07 000000444 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-18 03:48:57.254 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 406 ms. 17-03-18 03:48:57.254 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-18 03:48:57.254 -07 000000474 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms. 17-03-18 03:48:57.384 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1144 17-03-18 03:48:57.384 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1144 17-03-18 03:48:57.384 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-18 03:48:57.384 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1144 17-03-18 03:48:57.384 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1144 17-03-18 03:48:57.384 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-18 03:48:57.384 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start. 17-03-18 03:48:57.384 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-18 03:48:57.384 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-18 03:48:57.384 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start. 17-03-18 03:48:57.574 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP 1339 17-03-18 03:48:57.574 -07 000000424 INF: FPGA: Recv CAMDBLSNAP 17-03-18 03:48:57.574 -07 000000610 INF: FPGA: 'CAMDBLSNAP 411 411 198 198 36681 150' command took 2 ms to send, 1336 ms to get response, and 1346 ms overall 17-03-18 03:48:57.574 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880 17-03-18 03:48:57.574 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 16 at Y-position 71.5185546875, Z-Position -0.16711088903958. ------ 17-03-18 03:48:57.584 -07 000000474 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-18 03:48:57.584 -07 000000581 INF: Y Motor: MoveYZ optimized starting. Moving Y to 72.3626 mm, moving Z to -0.17351 mm 17-03-18 03:48:57.584 -07 000000581 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move 17-03-18 03:48:57.584 -07 000000424 INF: Y Motor: Entering MoveAbsStepped (target = 115780 steps, sync = True, waitForSettling = True) 17-03-18 03:48:57.584 -07 000000424 INF: Y Motor: Moving to 72.3626 mm, started at 71.5186 mm, delta = 0.8441 mm 17-03-18 03:48:57.594 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 03:48:57.774 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 389 ms. 17-03-18 03:48:57.774 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 389 ms. 17-03-18 03:48:57.774 -07 000000606 INF: Camera: CopyActivePixFullImage start. 17-03-18 03:48:57.774 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-18 03:48:57.784 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 395 ms. 17-03-18 03:48:57.784 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms. 17-03-18 03:48:57.784 -07 000000444 INF: Camera: CopyActivePixFullImage start. 17-03-18 03:48:57.784 -07 000000444 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-18 03:48:57.784 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 401 ms. 17-03-18 03:48:57.784 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 399 ms. 17-03-18 03:48:57.794 -07 000000444 INF: Z Motor: Entering MoveAbsStepped (DAC = 37904, sync = True, waitForSettling = False) 17-03-18 03:48:57.794 -07 000000444 INF: Z Motor: Moving to -0.173513 mm, started at -0.167111 mm, distance = -6.40 um 17-03-18 03:48:57.794 -07 000000444 INF: FPGA: Xmit ZDACW 37904\n [Z Motor] 17-03-18 03:48:57.794 -07 000000606 INF: FPGA: Recv FOCMRRCUR 17-03-18 03:48:57.794 -07 000000606 INF: FPGA: Recv YRDPOS 146470 17-03-18 03:48:57.794 -07 000000474 INF: FPGA: 'FOCMRRCUR 80' command took 1 ms to send, 206 ms to get response, and 214 ms overall 17-03-18 03:48:57.794 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 196 ms to get response, and 209 ms overall 17-03-18 03:48:57.794 -07 000000424 INF: Y Motor: Encoder = 146470 = motor step 114429.7 = 71.5186 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 03:48:57.794 -07 000000424 INF: Y Motor: Last commanded position = 71.5326 mm (114452.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True 17-03-18 03:48:57.794 -07 000000424 INF: Y Motor: Moving 1350 steps-30 17-03-18 03:48:57.794 -07 000000606 INF: FPGA: Recv ZDACW 17-03-18 03:48:57.804 -07 000000444 INF: FPGA: 'ZDACW 37904' command took 0 ms to send, 0 ms to get response, and 4 ms overall 17-03-18 03:48:57.804 -07 000000474 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror] 17-03-18 03:48:57.814 -07 000000424 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor] 17-03-18 03:48:57.824 -07 000000444 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-18 03:48:57.824 -07 000000606 INF: FPGA: Recv ZDACR 37904 17-03-18 03:48:57.834 -07 000000444 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall 17-03-18 03:48:57.834 -07 000000444 INF: Z Motor: MoveAbsStepped took 34 ms (did NOT wait for settling yet)) 17-03-18 03:48:58.004 -07 000000606 INF: FPGA: Recv FOCMRRFOC 17-03-18 03:48:58.004 -07 000000474 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 206 ms overall 17-03-18 03:48:58.194 -07 000000606 INF: FPGA: Recv YMVTILE 17-03-18 03:48:58.194 -07 000000424 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 371 ms to get response, and 394 ms overall 17-03-18 03:48:58.234 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 03:48:58.244 -07 000000606 INF: FPGA: Recv YRDPOS 148171 17-03-18 03:48:58.244 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall 17-03-18 03:48:58.244 -07 000000424 INF: Y Motor: Encoder = 148171 = motor step 115758.6 = 72.3491 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 03:48:58.244 -07 000000424 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm) 17-03-18 03:48:58.244 -07 000000424 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.844 mm, average velocity = 2.142 mm/sec 17-03-18 03:48:59.194 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 03:48:59.194 -07 000000474 INF: FPGA: Recv YRDPOS 148171 17-03-18 03:48:59.204 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:48:59.204 -07 000000424 INF: Y Motor: Encoder = 148171 = motor step 115758.6 = 72.3491 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 03:48:59.234 -07 000000424 INF: Y Motor: After move to 72.362610, error = -0.013489, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm 17-03-18 03:48:59.234 -07 000000424 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm) 17-03-18 03:48:59.234 -07 000000424 INF: Y Motor: Moved to 72.3491 after 1643 ms (table move) 17-03-18 03:48:59.234 -07 000000581 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173513 mm (DAC = 37904) 17-03-18 03:48:59.234 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:48:59.234 -07 000000444 INF: FPGA: Recv ZSGSRD 36304 17-03-18 03:48:59.244 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall 17-03-18 03:48:59.244 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:48:59.244 -07 000000444 INF: FPGA: Recv ZSGSRD 36297 17-03-18 03:48:59.254 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:48:59.254 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:48:59.254 -07 000000444 INF: FPGA: Recv ZSGSRD 36298 17-03-18 03:48:59.264 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:48:59.264 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:48:59.264 -07 000000424 INF: FPGA: Recv ZSGSRD 36297 17-03-18 03:48:59.274 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:48:59.274 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:48:59.274 -07 000000444 INF: FPGA: Recv ZSGSRD 36294 17-03-18 03:48:59.284 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:48:59.284 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:48:59.284 -07 000000424 INF: FPGA: Recv ZSGSRD 36307 17-03-18 03:48:59.294 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:48:59.294 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:48:59.294 -07 000000606 INF: FPGA: Recv ZSGSRD 36302 17-03-18 03:48:59.304 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:48:59.304 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:48:59.304 -07 000000606 INF: FPGA: Recv ZSGSRD 36303 17-03-18 03:48:59.314 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:48:59.314 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:48:59.314 -07 000000424 INF: FPGA: Recv ZSGSRD 36297 17-03-18 03:48:59.324 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:48:59.324 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:48:59.324 -07 000000474 INF: FPGA: Recv ZSGSRD 36295 17-03-18 03:48:59.334 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:48:59.334 -07 000000581 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-18 03:48:59.334 -07 000000606 INF: FPGA: Recv ZPIEZORD 32371 17-03-18 03:48:59.344 -07 000000581 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:48:59.344 -07 000000581 INF: Z Motor: Piezo is near 49.2 V (nominally 0 to 100 V), expect near 57.8 V, since DAC is at 5.784 V. Piezo Error = -8.7 V. 17-03-18 03:48:59.344 -07 000000581 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.5 um, Read 10 ADC samples: Avg = 36299 (-172.6 uncal um), Error = 0.9 uncal um, Median = 36298 (-172.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 36294 (-172.6 uncal um), Max = 36307 (-172.7 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um) 17-03-18 03:48:59.344 -07 000000581 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36299, posNoise = 8, negNoise = 5 17-03-18 03:48:59.344 -07 000000581 INF: Z Motor: After move to -0.173513, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-18 03:48:59.344 -07 000000581 INF: Z Motor: Settle wait time = 1439 ms, measure time = 105 ms (allowed 150 ms), total time = 1544 ms 17-03-18 03:48:59.344 -07 000000581 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms 17-03-18 03:48:59.394 -07 000000581 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1806 ms 17-03-18 03:48:59.394 -07 000000581 INF: Y Motor: Restored settling times back to 3000 or 1100 ms 17-03-18 03:48:59.394 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-18 03:48:59.394 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-18 03:48:59.394 -07 000000444 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-18 03:48:59.394 -07 000000581 INF: Disarm and arm camera sensor 0: ROITrigger start. 17-03-18 03:48:59.394 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-18 03:48:59.394 -07 000000474 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-18 03:48:59.404 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms. 17-03-18 03:48:59.404 -07 000000581 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start. 17-03-18 03:48:59.404 -07 000000581 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms. 17-03-18 03:48:59.404 -07 000000581 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start. 17-03-18 03:48:59.404 -07 000000581 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms. 17-03-18 03:48:59.404 -07 000000581 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms. 17-03-18 03:48:59.414 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera] 17-03-18 03:48:59.454 -07 000000590 INF: FPGA: Recv @CAMSNAP turning led on 40 17-03-18 03:48:59.754 -07 000000579 INF: FPGA: Recv @CAMSNAP img rdy 340 17-03-18 03:48:59.754 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340 17-03-18 03:48:59.754 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start. 17-03-18 03:48:59.764 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 648609776, 0x0, 559484976) start. 17-03-18 03:48:59.794 -07 000000444 INF: FPGA: Recv @CAMSNAP 380 17-03-18 03:48:59.794 -07 000000382 INF: FPGA: Recv CAMSNAP 17-03-18 03:48:59.794 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 378 ms to get response, and 385 ms overall 17-03-18 03:48:59.874 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 648609776, 0x0, 559484976) end. Duration was 113 ms. 17-03-18 03:48:59.874 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-18 03:48:59.874 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms. 17-03-18 03:48:59.874 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms. 17-03-18 03:48:59.894 -07 000000382 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-18 03:48:59.894 -07 000000424 INF: Autofocus start 17-03-18 03:48:59.894 -07 000000424 INF: MeasureProfile start 17-03-18 03:48:59.894 -07 000000474 INF: FPGA: Recv FOCMRRCUR 17-03-18 03:48:59.904 -07 000000382 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall 17-03-18 03:48:59.904 -07 000000382 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror] 17-03-18 03:48:59.914 -07 000000424 INF: MeasureProfile done 17-03-18 03:48:59.914 -07 000000424 INF: X=16 Z correction [um]=0.01042744 17-03-18 03:48:59.914 -07 000000424 INF: Autofocus finished 17-03-18 03:49:00.104 -07 000000424 INF: FPGA: Recv FOCMRRIMG 17-03-18 03:49:00.104 -07 000000382 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall 17-03-18 03:49:00.104 -07 000000610 INF: ------------ Scan Snapping tile 16 at Y-position 72.34912109375, Z-position -0.173515828544916. ---------- 17-03-18 03:49:00.104 -07 000000610 INF: Cycle 117 Tile 16 Exposure Settings A 411 G 198 T 198 C 411 17-03-18 03:49:00.114 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36419, sync = True, waitForSettling = True) 17-03-18 03:49:00.114 -07 000000610 INF: Z Motor: Moving to -0.166715 mm, started at -0.173516 mm, distance = 6.80 um 17-03-18 03:49:00.114 -07 000000610 INF: FPGA: Xmit ZDACW 36419\n [Z Motor] 17-03-18 03:49:00.114 -07 000000590 INF: FPGA: Recv ZDACW 17-03-18 03:49:00.124 -07 000000610 INF: FPGA: 'ZDACW 36419' command took 0 ms to send, 0 ms to get response, and 7 ms overall 17-03-18 03:49:00.124 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-18 03:49:00.124 -07 000000424 INF: FPGA: Recv ZDACR 36419 17-03-18 03:49:00.134 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:00.134 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-18 03:49:00.284 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:49:00.284 -07 000000579 INF: FPGA: Recv ZSGSRD 35239 17-03-18 03:49:00.294 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-18 03:49:00.294 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:49:00.294 -07 000000606 INF: FPGA: Recv ZSGSRD 35236 17-03-18 03:49:00.304 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:00.304 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:49:00.304 -07 000000382 INF: FPGA: Recv ZSGSRD 35244 17-03-18 03:49:00.314 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:00.314 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:49:00.314 -07 000000606 INF: FPGA: Recv ZSGSRD 35239 17-03-18 03:49:00.324 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:00.324 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:49:00.324 -07 000000579 INF: FPGA: Recv ZSGSRD 35249 17-03-18 03:49:00.334 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:00.334 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:49:00.334 -07 000000590 INF: FPGA: Recv ZSGSRD 35244 17-03-18 03:49:00.344 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:00.344 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:49:00.344 -07 000000579 INF: FPGA: Recv ZSGSRD 35242 17-03-18 03:49:00.354 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:00.354 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:49:00.354 -07 000000581 INF: FPGA: Recv ZSGSRD 35246 17-03-18 03:49:00.364 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:00.374 -07 000000424 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 117, FrontChillerTemperature: 4.004458, 17-03-18 03:49:00.384 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:49:00.384 -07 000000382 INF: FPGA: Recv ZSGSRD 35248 17-03-18 03:49:00.394 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall 17-03-18 03:49:00.414 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:49:00.414 -07 000000461 INF: FPGA: Recv ZSGSRD 35242 17-03-18 03:49:00.424 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall 17-03-18 03:49:00.434 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-18 03:49:00.434 -07 000000581 INF: FPGA: Recv ZPIEZORD 30967 17-03-18 03:49:00.444 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 19 ms overall 17-03-18 03:49:00.444 -07 000000610 INF: Z Motor: Piezo is near 46.2 V (nominally 0 to 100 V), expect near 55.6 V, since DAC is at 5.557 V. Piezo Error = -9.4 V. 17-03-18 03:49:00.444 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.7 um, Read 10 ADC samples: Avg = 35243 (-165.9 uncal um), Error = 0.9 uncal um, Median = 35243 (-165.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 35236 (-165.8 uncal um), Max = 35249 (-165.9 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um) 17-03-18 03:49:00.444 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35243, posNoise = 6, negNoise = 7 17-03-18 03:49:00.444 -07 000000610 INF: Z Motor: After move to -0.166715, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-18 03:49:00.444 -07 000000610 INF: Z Motor: MoveAbsStepped took 329 ms) 17-03-18 03:49:00.444 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-18 03:49:00.444 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-18 03:49:00.444 -07 000000579 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-18 03:49:00.444 -07 000000581 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-18 03:49:00.444 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start. 17-03-18 03:49:00.444 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) start. 17-03-18 03:49:00.444 -07 000000590 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start. 17-03-18 03:49:00.444 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-18 03:49:00.444 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms. 17-03-18 03:49:00.444 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start. 17-03-18 03:49:00.444 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-18 03:49:00.444 -07 000000590 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start. 17-03-18 03:49:00.454 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms. 17-03-18 03:49:00.454 -07 000000590 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms. 17-03-18 03:49:00.454 -07 000000590 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start. 17-03-18 03:49:00.454 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start. 17-03-18 03:49:00.464 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms. 17-03-18 03:49:00.464 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms. 17-03-18 03:49:00.464 -07 000000590 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms. 17-03-18 03:49:00.464 -07 000000590 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms. 17-03-18 03:49:00.464 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 411 411 198 198 36596 150\n [Camera] 17-03-18 03:49:00.664 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP turning red on 192 17-03-18 03:49:01.074 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 606 17-03-18 03:49:01.074 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 606 17-03-18 03:49:01.074 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-18 03:49:01.074 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-18 03:49:01.074 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start. 17-03-18 03:49:01.084 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 606 17-03-18 03:49:01.084 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 606 17-03-18 03:49:01.084 -07 000000581 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-18 03:49:01.084 -07 000000581 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-18 03:49:01.084 -07 000000581 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) start. 17-03-18 03:49:01.264 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36596 796 17-03-18 03:49:01.414 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP turning grn on 948 17-03-18 03:49:01.474 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 400 ms. 17-03-18 03:49:01.474 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms. 17-03-18 03:49:01.474 -07 000000424 INF: Camera: CopyActivePixFullImage start. 17-03-18 03:49:01.484 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-18 03:49:01.484 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms. 17-03-18 03:49:01.484 -07 000000581 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) end. Duration was 400 ms. 17-03-18 03:49:01.484 -07 000000581 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms. 17-03-18 03:49:01.484 -07 000000581 INF: Camera: CopyActivePixFullImage start. 17-03-18 03:49:01.484 -07 000000581 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-18 03:49:01.494 -07 000000581 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms. 17-03-18 03:49:01.614 -07 000000382 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-18 03:49:01.614 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 116. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1683, R2=1752, Total=3435. Warn if over 250 bubbles per interval. 17-03-18 03:49:01.614 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1144 17-03-18 03:49:01.614 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1144 17-03-18 03:49:01.614 -07 000000581 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-18 03:49:01.614 -07 000000581 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-18 03:49:01.614 -07 000000581 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) start. 17-03-18 03:49:01.624 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1144 17-03-18 03:49:01.624 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1144 17-03-18 03:49:01.624 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-18 03:49:01.624 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-18 03:49:01.624 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start. 17-03-18 03:49:01.804 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP 1336 17-03-18 03:49:01.804 -07 000000424 INF: FPGA: Recv CAMDBLSNAP 17-03-18 03:49:01.804 -07 000000610 INF: FPGA: 'CAMDBLSNAP 411 411 198 198 36596 150' command took 2 ms to send, 1337 ms to get response, and 1343 ms overall 17-03-18 03:49:01.804 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880 17-03-18 03:49:01.804 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 17 at Y-position 72.34912109375, Z-Position -0.166731860523216. ------ 17-03-18 03:49:01.814 -07 000000461 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-18 03:49:01.814 -07 000000579 INF: Y Motor: MoveYZ optimized starting. Moving Y to 73.1926 mm, moving Z to -0.17322 mm 17-03-18 03:49:01.814 -07 000000579 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move 17-03-18 03:49:01.814 -07 000000424 INF: Y Motor: Entering MoveAbsStepped (target = 117108 steps, sync = True, waitForSettling = True) 17-03-18 03:49:01.814 -07 000000424 INF: Y Motor: Moving to 73.1926 mm, started at 72.3491 mm, delta = 0.8435 mm 17-03-18 03:49:01.824 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 03:49:02.024 -07 000000581 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) end. Duration was 403 ms. 17-03-18 03:49:02.024 -07 000000581 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms. 17-03-18 03:49:02.024 -07 000000581 INF: Camera: CopyActivePixFullImage start. 17-03-18 03:49:02.024 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 403 ms. 17-03-18 03:49:02.024 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 403 ms. 17-03-18 03:49:02.024 -07 000000382 INF: Camera: CopyActivePixFullImage start. 17-03-18 03:49:02.024 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-18 03:49:02.034 -07 000000581 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms. 17-03-18 03:49:02.034 -07 000000581 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms. 17-03-18 03:49:02.034 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms. 17-03-18 03:49:02.044 -07 000000581 INF: Z Motor: Entering MoveAbsStepped (DAC = 37841, sync = True, waitForSettling = False) 17-03-18 03:49:02.044 -07 000000581 INF: Z Motor: Moving to -0.173225 mm, started at -0.166732 mm, distance = -6.49 um 17-03-18 03:49:02.044 -07 000000581 INF: FPGA: Xmit ZDACW 37841\n [Z Motor] 17-03-18 03:49:02.044 -07 000000382 INF: FPGA: Recv FOCMRRCUR 17-03-18 03:49:02.044 -07 000000382 INF: FPGA: Recv YRDPOS 148171 17-03-18 03:49:02.044 -07 000000461 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 225 ms to get response, and 232 ms overall 17-03-18 03:49:02.044 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 215 ms to get response, and 227 ms overall 17-03-18 03:49:02.044 -07 000000382 INF: FPGA: Recv ZDACW 17-03-18 03:49:02.044 -07 000000424 INF: Y Motor: Encoder = 148171 = motor step 115758.6 = 72.3491 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 03:49:02.044 -07 000000424 INF: Y Motor: Last commanded position = 72.3626 mm (115780.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True 17-03-18 03:49:02.044 -07 000000424 INF: Y Motor: Moving 1350 steps-28 17-03-18 03:49:02.054 -07 000000581 INF: FPGA: 'ZDACW 37841' command took 0 ms to send, 0 ms to get response, and 8 ms overall 17-03-18 03:49:02.054 -07 000000424 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor] 17-03-18 03:49:02.064 -07 000000461 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror] 17-03-18 03:49:02.074 -07 000000581 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-18 03:49:02.074 -07 000000382 INF: FPGA: Recv ZDACR 37841 17-03-18 03:49:02.084 -07 000000581 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall 17-03-18 03:49:02.084 -07 000000581 INF: Z Motor: MoveAbsStepped took 39 ms (did NOT wait for settling yet)) 17-03-18 03:49:02.264 -07 000000382 INF: FPGA: Recv FOCMRRFOC 17-03-18 03:49:02.264 -07 000000461 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 216 ms overall 17-03-18 03:49:02.424 -07 000000461 INF: FPGA: Recv YMVTILE 17-03-18 03:49:02.424 -07 000000424 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 381 ms overall 17-03-18 03:49:02.474 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 03:49:02.474 -07 000000581 INF: FPGA: Recv YRDPOS 149863 17-03-18 03:49:02.484 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall 17-03-18 03:49:02.484 -07 000000424 INF: Y Motor: Encoder = 149863 = motor step 117080.5 = 73.1753 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 03:49:02.484 -07 000000424 INF: Y Motor: Position error before settling (table move) = -35 encoder counts (-0.017 mm) 17-03-18 03:49:02.484 -07 000000424 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 381 ms, distance = 0.843 mm, average velocity = 2.214 mm/sec 17-03-18 03:49:03.434 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 03:49:03.434 -07 000000581 INF: FPGA: Recv YRDPOS 149864 17-03-18 03:49:03.444 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:03.444 -07 000000424 INF: Y Motor: Encoder = 149864 = motor step 117081.3 = 73.1758 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 03:49:03.474 -07 000000424 INF: Y Motor: After move to 73.192604, error = -0.016823, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm 17-03-18 03:49:03.474 -07 000000424 INF: Y Motor: Position error after settling (table move) = -34 encoder counts (-0.017 mm), Delta during settling = 1 counts (0.000 mm) 17-03-18 03:49:03.474 -07 000000424 INF: Y Motor: Moved to 73.1758 after 1651 ms (table move) 17-03-18 03:49:03.474 -07 000000579 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173225 mm (DAC = 37841) 17-03-18 03:49:03.474 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:49:03.474 -07 000000382 INF: FPGA: Recv ZSGSRD 36261 17-03-18 03:49:03.484 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall 17-03-18 03:49:03.484 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:49:03.484 -07 000000581 INF: FPGA: Recv ZSGSRD 36259 17-03-18 03:49:03.494 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:03.494 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:49:03.494 -07 000000382 INF: FPGA: Recv ZSGSRD 36253 17-03-18 03:49:03.504 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:03.504 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:49:03.504 -07 000000382 INF: FPGA: Recv ZSGSRD 36255 17-03-18 03:49:03.514 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:03.514 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:49:03.514 -07 000000581 INF: FPGA: Recv ZSGSRD 36252 17-03-18 03:49:03.524 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:03.524 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:49:03.524 -07 000000581 INF: FPGA: Recv ZSGSRD 36248 17-03-18 03:49:03.534 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:03.534 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:49:03.534 -07 000000581 INF: FPGA: Recv ZSGSRD 36253 17-03-18 03:49:03.544 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:03.544 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:49:03.544 -07 000000424 INF: FPGA: Recv ZSGSRD 36252 17-03-18 03:49:03.554 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:03.554 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:49:03.554 -07 000000461 INF: FPGA: Recv ZSGSRD 36250 17-03-18 03:49:03.564 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:03.564 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:49:03.564 -07 000000581 INF: FPGA: Recv ZSGSRD 36251 17-03-18 03:49:03.574 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:03.574 -07 000000579 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-18 03:49:03.574 -07 000000382 INF: FPGA: Recv ZPIEZORD 32301 17-03-18 03:49:03.584 -07 000000579 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:03.584 -07 000000579 INF: Z Motor: Piezo is near 49.0 V (nominally 0 to 100 V), expect near 57.7 V, since DAC is at 5.774 V. Piezo Error = -8.7 V. 17-03-18 03:49:03.584 -07 000000579 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.2 um, Read 10 ADC samples: Avg = 36253 (-172.3 uncal um), Error = 0.9 uncal um, Median = 36252 (-172.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 36248 (-172.3 uncal um), Max = 36261 (-172.4 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um) 17-03-18 03:49:03.584 -07 000000579 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36253, posNoise = 8, negNoise = 5 17-03-18 03:49:03.584 -07 000000579 INF: Z Motor: After move to -0.173225, error = 0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-18 03:49:03.584 -07 000000579 INF: Z Motor: Settle wait time = 1432 ms, measure time = 107 ms (allowed 150 ms), total time = 1539 ms 17-03-18 03:49:03.584 -07 000000579 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms 17-03-18 03:49:03.634 -07 000000579 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1816 ms 17-03-18 03:49:03.634 -07 000000579 INF: Y Motor: Restored settling times back to 3000 or 1100 ms 17-03-18 03:49:03.634 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-18 03:49:03.634 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-18 03:49:03.634 -07 000000461 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-18 03:49:03.634 -07 000000579 INF: Disarm and arm camera sensor 0: ROITrigger start. 17-03-18 03:49:03.634 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-18 03:49:03.634 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-18 03:49:03.634 -07 000000579 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start. 17-03-18 03:49:03.634 -07 000000581 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-18 03:49:03.634 -07 000000579 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms. 17-03-18 03:49:03.644 -07 000000579 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start. 17-03-18 03:49:03.644 -07 000000579 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms. 17-03-18 03:49:03.644 -07 000000579 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms. 17-03-18 03:49:03.644 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera] 17-03-18 03:49:03.694 -07 000000438 INF: FPGA: Recv @CAMSNAP turning led on 40 17-03-18 03:49:03.994 -07 000000579 INF: FPGA: Recv @CAMSNAP img rdy 340 17-03-18 03:49:03.994 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340 17-03-18 03:49:03.994 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start. 17-03-18 03:49:03.994 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2241338672, 0x0, 559484976) start. 17-03-18 03:49:04.034 -07 000000561 INF: FPGA: Recv @CAMSNAP 380 17-03-18 03:49:04.034 -07 000000438 INF: FPGA: Recv CAMSNAP 17-03-18 03:49:04.034 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 374 ms to get response, and 384 ms overall 17-03-18 03:49:04.114 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2241338672, 0x0, 559484976) end. Duration was 114 ms. 17-03-18 03:49:04.114 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-18 03:49:04.114 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms. 17-03-18 03:49:04.114 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms. 17-03-18 03:49:04.134 -07 000000561 INF: Autofocus start 17-03-18 03:49:04.134 -07 000000561 INF: MeasureProfile start 17-03-18 03:49:04.134 -07 000000382 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-18 03:49:04.134 -07 000000569 INF: FPGA: Recv FOCMRRCUR 17-03-18 03:49:04.144 -07 000000382 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall 17-03-18 03:49:04.144 -07 000000382 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror] 17-03-18 03:49:04.144 -07 000000561 INF: MeasureProfile done 17-03-18 03:49:04.144 -07 000000561 INF: X=16 Z correction [um]=0.01042744 17-03-18 03:49:04.144 -07 000000561 INF: Autofocus finished 17-03-18 03:49:04.344 -07 000000424 INF: FPGA: Recv FOCMRRIMG 17-03-18 03:49:04.374 -07 000000382 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 225 ms to get response, and 235 ms overall 17-03-18 03:49:04.374 -07 000000610 INF: ------------ Scan Snapping tile 17 at Y-position 73.17578125, Z-position -0.173220314786395. ---------- 17-03-18 03:49:04.384 -07 000000610 INF: Cycle 117 Tile 17 Exposure Settings A 411 G 198 T 198 C 411 17-03-18 03:49:04.384 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36355, sync = True, waitForSettling = True) 17-03-18 03:49:04.384 -07 000000610 INF: Z Motor: Moving to -0.166423 mm, started at -0.173220 mm, distance = 6.80 um 17-03-18 03:49:04.384 -07 000000610 INF: FPGA: Xmit ZDACW 36355\n [Z Motor] 17-03-18 03:49:04.384 -07 000000581 INF: FPGA: Recv ZDACW 17-03-18 03:49:04.394 -07 000000610 INF: FPGA: 'ZDACW 36355' command took 0 ms to send, 0 ms to get response, and 5 ms overall 17-03-18 03:49:04.394 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-18 03:49:04.394 -07 000000569 INF: FPGA: Recv ZDACR 36355 17-03-18 03:49:04.404 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:04.404 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-18 03:49:04.554 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:49:04.554 -07 000000461 INF: FPGA: Recv ZSGSRD 35195 17-03-18 03:49:04.564 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-18 03:49:04.564 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:49:04.564 -07 000000579 INF: FPGA: Recv ZSGSRD 35192 17-03-18 03:49:04.574 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:04.574 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:49:04.574 -07 000000438 INF: FPGA: Recv ZSGSRD 35199 17-03-18 03:49:04.584 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:04.584 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:49:04.584 -07 000000569 INF: FPGA: Recv ZSGSRD 35201 17-03-18 03:49:04.594 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:04.594 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:49:04.594 -07 000000438 INF: FPGA: Recv ZSGSRD 35193 17-03-18 03:49:04.604 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:04.604 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:49:04.604 -07 000000438 INF: FPGA: Recv ZSGSRD 35196 17-03-18 03:49:04.614 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:04.614 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:49:04.614 -07 000000438 INF: FPGA: Recv ZSGSRD 35196 17-03-18 03:49:04.624 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:04.624 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:49:04.624 -07 000000626 INF: FPGA: Recv ZSGSRD 35192 17-03-18 03:49:04.634 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:04.634 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:49:04.634 -07 000000569 INF: FPGA: Recv ZSGSRD 35199 17-03-18 03:49:04.644 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:04.644 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:49:04.644 -07 000000382 INF: FPGA: Recv ZSGSRD 35191 17-03-18 03:49:04.654 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:04.654 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-18 03:49:04.654 -07 000000579 INF: FPGA: Recv ZPIEZORD 30902 17-03-18 03:49:04.664 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:04.664 -07 000000610 INF: Z Motor: Piezo is near 46.0 V (nominally 0 to 100 V), expect near 55.5 V, since DAC is at 5.547 V. Piezo Error = -9.5 V. 17-03-18 03:49:04.664 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.4 um, Read 10 ADC samples: Avg = 35195 (-165.6 uncal um), Error = 0.9 uncal um, Median = 35196 (-165.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35191 (-165.5 uncal um), Max = 35201 (-165.6 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um) 17-03-18 03:49:04.664 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35195, posNoise = 6, negNoise = 4 17-03-18 03:49:04.664 -07 000000610 INF: Z Motor: After move to -0.166423, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-18 03:49:04.664 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms) 17-03-18 03:49:04.664 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-18 03:49:04.664 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-18 03:49:04.664 -07 000000461 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-18 03:49:04.664 -07 000000438 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-18 03:49:04.664 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start. 17-03-18 03:49:04.664 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-18 03:49:04.664 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start. 17-03-18 03:49:04.664 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) start. 17-03-18 03:49:04.664 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms. 17-03-18 03:49:04.664 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start. 17-03-18 03:49:04.664 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms. 17-03-18 03:49:04.664 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start. 17-03-18 03:49:04.674 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms. 17-03-18 03:49:04.674 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start. 17-03-18 03:49:04.674 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms. 17-03-18 03:49:04.674 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start. 17-03-18 03:49:04.684 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms. 17-03-18 03:49:04.684 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms. 17-03-18 03:49:04.684 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms. 17-03-18 03:49:04.684 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms. 17-03-18 03:49:04.684 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 411 411 198 198 36532 150\n [Camera] 17-03-18 03:49:04.884 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP turning red on 192 17-03-18 03:49:05.294 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 603 17-03-18 03:49:05.294 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 603 17-03-18 03:49:05.294 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-18 03:49:05.294 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-18 03:49:05.294 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) start. 17-03-18 03:49:05.294 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 603 17-03-18 03:49:05.294 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 603 17-03-18 03:49:05.294 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-18 03:49:05.294 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-18 03:49:05.294 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2486767776, 0x0, 418435064) start. 17-03-18 03:49:05.484 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36532 796 17-03-18 03:49:05.634 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP turning grn on 946 17-03-18 03:49:05.694 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) end. Duration was 399 ms. 17-03-18 03:49:05.694 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms. 17-03-18 03:49:05.694 -07 000000382 INF: Camera: CopyActivePixFullImage start. 17-03-18 03:49:05.694 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2486767776, 0x0, 418435064) end. Duration was 399 ms. 17-03-18 03:49:05.694 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms. 17-03-18 03:49:05.694 -07 000000424 INF: Camera: CopyActivePixFullImage start. 17-03-18 03:49:05.704 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-18 03:49:05.704 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms. 17-03-18 03:49:05.704 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms. 17-03-18 03:49:05.714 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms. 17-03-18 03:49:05.774 -07 000000581 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 117, FrontChillerTemperature: 3.990831, 17-03-18 03:49:05.834 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1144 17-03-18 03:49:05.834 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1144 17-03-18 03:49:05.834 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-18 03:49:05.834 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-18 03:49:05.834 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) start. 17-03-18 03:49:05.834 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1144 17-03-18 03:49:05.834 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1144 17-03-18 03:49:05.834 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-18 03:49:05.834 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-18 03:49:05.844 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) start. 17-03-18 03:49:06.024 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP 1336 17-03-18 03:49:06.024 -07 000000461 INF: FPGA: Recv CAMDBLSNAP 17-03-18 03:49:06.024 -07 000000610 INF: FPGA: 'CAMDBLSNAP 411 411 198 198 36532 150' command took 2 ms to send, 1338 ms to get response, and 1343 ms overall 17-03-18 03:49:06.034 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880 17-03-18 03:49:06.034 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 18 at Y-position 73.17578125, Z-Position -0.166423498340412. ------ 17-03-18 03:49:06.034 -07 000000579 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-18 03:49:06.034 -07 000000626 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.0226 mm, moving Z to -0.17286 mm 17-03-18 03:49:06.034 -07 000000626 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move 17-03-18 03:49:06.034 -07 000000561 INF: FPGA: Recv FOCMRRCUR 17-03-18 03:49:06.034 -07 000000461 INF: Z Motor: Entering MoveAbsStepped (DAC = 37762, sync = True, waitForSettling = False) 17-03-18 03:49:06.034 -07 000000461 INF: Z Motor: Moving to -0.172863 mm, started at -0.166423 mm, distance = -6.44 um 17-03-18 03:49:06.034 -07 000000581 INF: Y Motor: Entering MoveAbsStepped (target = 118436 steps, sync = True, waitForSettling = True) 17-03-18 03:49:06.034 -07 000000581 INF: Y Motor: Moving to 74.0226 mm, started at 73.1758 mm, delta = 0.8468 mm 17-03-18 03:49:06.044 -07 000000579 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall 17-03-18 03:49:06.044 -07 000000461 INF: FPGA: Xmit ZDACW 37762\n [Z Motor] 17-03-18 03:49:06.044 -07 000000474 INF: FPGA: Recv ZDACW 17-03-18 03:49:06.054 -07 000000461 INF: FPGA: 'ZDACW 37762' command took 0 ms to send, 0 ms to get response, and 11 ms overall 17-03-18 03:49:06.054 -07 000000581 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 03:49:06.064 -07 000000579 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror] 17-03-18 03:49:06.074 -07 000000461 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-18 03:49:06.234 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) end. Duration was 398 ms. 17-03-18 03:49:06.234 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms. 17-03-18 03:49:06.234 -07 000000382 INF: Camera: CopyActivePixFullImage start. 17-03-18 03:49:06.234 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) end. Duration was 401 ms. 17-03-18 03:49:06.234 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms. 17-03-18 03:49:06.234 -07 000000569 INF: Camera: CopyActivePixFullImage start. 17-03-18 03:49:06.244 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-18 03:49:06.244 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms. 17-03-18 03:49:06.244 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms. 17-03-18 03:49:06.244 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms. 17-03-18 03:49:06.254 -07 000000455 INF: FPGA: Recv YRDPOS 149864 17-03-18 03:49:06.254 -07 000000455 INF: FPGA: Recv ZDACR 37762 17-03-18 03:49:06.254 -07 000000581 INF: FPGA: 'YRDPOS' command took 0 ms to send, 199 ms to get response, and 219 ms overall 17-03-18 03:49:06.254 -07 000000581 INF: Y Motor: Encoder = 149864 = motor step 117081.3 = 73.1758 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 03:49:06.254 -07 000000581 INF: Y Motor: Last commanded position = 73.1926 mm (117108.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True 17-03-18 03:49:06.254 -07 000000581 INF: Y Motor: Moving 1355 steps-35 17-03-18 03:49:06.264 -07 000000581 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor] 17-03-18 03:49:06.264 -07 000000461 INF: FPGA: 'ZDACR' command took 0 ms to send, 179 ms to get response, and 209 ms overall 17-03-18 03:49:06.264 -07 000000461 INF: Z Motor: MoveAbsStepped took 221 ms (did NOT wait for settling yet)) 17-03-18 03:49:06.264 -07 000000455 INF: FPGA: Recv FOCMRRFOC 17-03-18 03:49:06.264 -07 000000579 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 223 ms overall 17-03-18 03:49:06.614 -07 000000579 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-18 03:49:06.614 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 116. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1683, R2=1752, Total=3435. Warn if over 250 bubbles per interval. 17-03-18 03:49:06.634 -07 000000455 INF: FPGA: Recv YMVTILE 17-03-18 03:49:06.634 -07 000000581 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 378 ms overall 17-03-18 03:49:06.674 -07 000000581 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 03:49:06.674 -07 000000579 INF: FPGA: Recv YRDPOS 151568 17-03-18 03:49:06.684 -07 000000581 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall 17-03-18 03:49:06.684 -07 000000581 INF: Y Motor: Encoder = 151568 = motor step 118412.5 = 74.0078 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 03:49:06.684 -07 000000581 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm) 17-03-18 03:49:06.684 -07 000000581 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 378 ms, distance = 0.847 mm, average velocity = 2.240 mm/sec 17-03-18 03:49:07.634 -07 000000581 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 03:49:07.634 -07 000000461 INF: FPGA: Recv YRDPOS 151568 17-03-18 03:49:07.644 -07 000000581 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-18 03:49:07.644 -07 000000581 INF: Y Motor: Encoder = 151568 = motor step 118412.5 = 74.0078 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 03:49:07.664 -07 000000581 INF: Y Motor: After move to 74.022606, error = -0.014793, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm 17-03-18 03:49:07.664 -07 000000581 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm) 17-03-18 03:49:07.664 -07 000000581 INF: Y Motor: Moved to 74.0078 after 1624 ms (table move) 17-03-18 03:49:07.664 -07 000000626 INF: Z Motor: EndOfMoveAbsStepped: target = -0.172863 mm (DAC = 37762) 17-03-18 03:49:07.664 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:49:07.664 -07 000000579 INF: FPGA: Recv ZSGSRD 36203 17-03-18 03:49:07.674 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall 17-03-18 03:49:07.674 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:49:07.674 -07 000000461 INF: FPGA: Recv ZSGSRD 36200 17-03-18 03:49:07.684 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:07.684 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:49:07.684 -07 000000461 INF: FPGA: Recv ZSGSRD 36201 17-03-18 03:49:07.694 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:07.694 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:49:07.694 -07 000000455 INF: FPGA: Recv ZSGSRD 36205 17-03-18 03:49:07.704 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:07.704 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:49:07.704 -07 000000455 INF: FPGA: Recv ZSGSRD 36197 17-03-18 03:49:07.714 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:07.714 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:49:07.714 -07 000000579 INF: FPGA: Recv ZSGSRD 36199 17-03-18 03:49:07.724 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:07.724 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:49:07.724 -07 000000461 INF: FPGA: Recv ZSGSRD 36198 17-03-18 03:49:07.734 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:07.734 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:49:07.734 -07 000000581 INF: FPGA: Recv ZSGSRD 36199 17-03-18 03:49:07.744 -07 000000626 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:07.744 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:49:07.744 -07 000000579 INF: FPGA: Recv ZSGSRD 36199 17-03-18 03:49:07.754 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:07.754 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:49:07.754 -07 000000461 INF: FPGA: Recv ZSGSRD 36195 17-03-18 03:49:07.764 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:07.764 -07 000000626 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-18 03:49:07.764 -07 000000455 INF: FPGA: Recv ZPIEZORD 32256 17-03-18 03:49:07.774 -07 000000626 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:07.774 -07 000000626 INF: Z Motor: Piezo is near 48.9 V (nominally 0 to 100 V), expect near 57.6 V, since DAC is at 5.762 V. Piezo Error = -8.7 V. 17-03-18 03:49:07.774 -07 000000626 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.9 um, Read 10 ADC samples: Avg = 36200 (-172.0 uncal um), Error = 0.9 uncal um, Median = 36199 (-172.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 36195 (-172.0 uncal um), Max = 36205 (-172.0 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um) 17-03-18 03:49:07.774 -07 000000626 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36200, posNoise = 5, negNoise = 5 17-03-18 03:49:07.774 -07 000000626 INF: Z Motor: After move to -0.172863, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-18 03:49:07.774 -07 000000626 INF: Z Motor: Settle wait time = 1627 ms, measure time = 104 ms (allowed 150 ms), total time = 1731 ms 17-03-18 03:49:07.774 -07 000000626 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms 17-03-18 03:49:07.824 -07 000000626 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1785 ms 17-03-18 03:49:07.824 -07 000000626 INF: Y Motor: Restored settling times back to 3000 or 1100 ms 17-03-18 03:49:07.824 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-18 03:49:07.824 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-18 03:49:07.824 -07 000000461 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-18 03:49:07.824 -07 000000455 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-18 03:49:07.824 -07 000000579 INF: Disarm and arm camera sensor 0: ROITrigger start. 17-03-18 03:49:07.824 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-18 03:49:07.824 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms. 17-03-18 03:49:07.824 -07 000000579 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start. 17-03-18 03:49:07.834 -07 000000579 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms. 17-03-18 03:49:07.834 -07 000000579 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start. 17-03-18 03:49:07.834 -07 000000579 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms. 17-03-18 03:49:07.834 -07 000000579 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms. 17-03-18 03:49:07.844 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera] 17-03-18 03:49:07.884 -07 000000581 INF: FPGA: Recv @CAMSNAP turning led on 40 17-03-18 03:49:08.184 -07 000000461 INF: FPGA: Recv @CAMSNAP img rdy 340 17-03-18 03:49:08.184 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340 17-03-18 03:49:08.184 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start. 17-03-18 03:49:08.184 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 682359904, 0x0, 559484976) start. 17-03-18 03:49:08.224 -07 000000461 INF: FPGA: Recv @CAMSNAP 380 17-03-18 03:49:08.224 -07 000000444 INF: FPGA: Recv CAMSNAP 17-03-18 03:49:08.224 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall 17-03-18 03:49:08.304 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 682359904, 0x0, 559484976) end. Duration was 119 ms. 17-03-18 03:49:08.304 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-18 03:49:08.304 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms. 17-03-18 03:49:08.304 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 122 ms. 17-03-18 03:49:08.324 -07 000000461 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-18 03:49:08.324 -07 000000467 INF: Autofocus start 17-03-18 03:49:08.324 -07 000000467 INF: MeasureProfile start 17-03-18 03:49:08.324 -07 000000579 INF: FPGA: Recv FOCMRRCUR 17-03-18 03:49:08.334 -07 000000461 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall 17-03-18 03:49:08.334 -07 000000461 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror] 17-03-18 03:49:08.334 -07 000000467 INF: MeasureProfile done 17-03-18 03:49:08.344 -07 000000467 INF: X=-80 Z correction [um]=-0.4885566 17-03-18 03:49:08.344 -07 000000467 INF: Autofocus finished 17-03-18 03:49:08.534 -07 000000579 INF: FPGA: Recv FOCMRRIMG 17-03-18 03:49:08.534 -07 000000461 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall 17-03-18 03:49:08.534 -07 000000610 INF: ------------ Scan Snapping tile 18 at Y-position 74.0078125, Z-position -0.172879831542882. ---------- 17-03-18 03:49:08.534 -07 000000610 INF: Cycle 117 Tile 18 Exposure Settings A 411 G 198 T 198 C 411 17-03-18 03:49:08.544 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36168, sync = True, waitForSettling = True) 17-03-18 03:49:08.544 -07 000000610 INF: Z Motor: Moving to -0.165566 mm, started at -0.172880 mm, distance = 7.31 um 17-03-18 03:49:08.544 -07 000000610 INF: FPGA: Xmit ZDACW 36168\n [Z Motor] 17-03-18 03:49:08.544 -07 000000579 INF: FPGA: Recv ZDACW 17-03-18 03:49:08.554 -07 000000610 INF: FPGA: 'ZDACW 36168' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:08.554 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-18 03:49:08.554 -07 000000461 INF: FPGA: Recv ZDACR 36168 17-03-18 03:49:08.564 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:08.564 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-18 03:49:08.714 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:49:08.714 -07 000000455 INF: FPGA: Recv ZSGSRD 35061 17-03-18 03:49:08.724 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-18 03:49:08.724 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:49:08.724 -07 000000626 INF: FPGA: Recv ZSGSRD 35066 17-03-18 03:49:08.734 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:08.734 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:49:08.734 -07 000000467 INF: FPGA: Recv ZSGSRD 35055 17-03-18 03:49:08.744 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:08.744 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:49:08.744 -07 000000579 INF: FPGA: Recv ZSGSRD 35062 17-03-18 03:49:08.754 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:08.754 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:49:08.754 -07 000000455 INF: FPGA: Recv ZSGSRD 35069 17-03-18 03:49:08.764 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:08.764 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:49:08.764 -07 000000626 INF: FPGA: Recv ZSGSRD 35056 17-03-18 03:49:08.774 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:08.774 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:49:08.774 -07 000000444 INF: FPGA: Recv ZSGSRD 35064 17-03-18 03:49:08.784 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:08.784 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:49:08.784 -07 000000579 INF: FPGA: Recv ZSGSRD 35062 17-03-18 03:49:08.794 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:08.794 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:49:08.794 -07 000000455 INF: FPGA: Recv ZSGSRD 35064 17-03-18 03:49:08.804 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:08.804 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:49:08.804 -07 000000626 INF: FPGA: Recv ZSGSRD 35061 17-03-18 03:49:08.814 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:08.814 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-18 03:49:08.814 -07 000000467 INF: FPGA: Recv ZPIEZORD 30754 17-03-18 03:49:08.824 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:08.824 -07 000000610 INF: Z Motor: Piezo is near 45.7 V (nominally 0 to 100 V), expect near 55.2 V, since DAC is at 5.519 V. Piezo Error = -9.5 V. 17-03-18 03:49:08.824 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -165.6 um, Read 10 ADC samples: Avg = 35062 (-164.7 uncal um), Error = 0.9 uncal um, Median = 35062 (-164.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 35055 (-164.7 uncal um), Max = 35069 (-164.7 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um) 17-03-18 03:49:08.824 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35062, posNoise = 7, negNoise = 7 17-03-18 03:49:08.824 -07 000000610 INF: Z Motor: After move to -0.165566, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-18 03:49:08.824 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms) 17-03-18 03:49:08.824 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-18 03:49:08.824 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-18 03:49:08.824 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-18 03:49:08.824 -07 000000461 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-18 03:49:08.824 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start. 17-03-18 03:49:08.824 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-18 03:49:08.824 -07 000000467 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start. 17-03-18 03:49:08.824 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074704) start. 17-03-18 03:49:08.824 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms. 17-03-18 03:49:08.824 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start. 17-03-18 03:49:08.824 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms. 17-03-18 03:49:08.824 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start. 17-03-18 03:49:08.824 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms. 17-03-18 03:49:08.824 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start. 17-03-18 03:49:08.834 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms. 17-03-18 03:49:08.834 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start. 17-03-18 03:49:08.834 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms. 17-03-18 03:49:08.834 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms. 17-03-18 03:49:08.844 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms. 17-03-18 03:49:08.844 -07 000000467 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms. 17-03-18 03:49:08.844 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 411 411 198 198 36345 150\n [Camera] 17-03-18 03:49:09.044 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning red on 192 17-03-18 03:49:09.454 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 603 17-03-18 03:49:09.454 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 603 17-03-18 03:49:09.454 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-18 03:49:09.454 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-18 03:49:09.454 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 2620985504, 0x0, 391868352) start. 17-03-18 03:49:09.454 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 603 17-03-18 03:49:09.454 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 603 17-03-18 03:49:09.454 -07 000000581 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-18 03:49:09.454 -07 000000581 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-18 03:49:09.454 -07 000000581 INF: Camera: sBCa_ReadImage(785074704, 2684358704, 0x0, 418435064) start. 17-03-18 03:49:09.644 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36345 796 17-03-18 03:49:09.794 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP turning grn on 946 17-03-18 03:49:09.854 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 2620985504, 0x0, 391868352) end. Duration was 398 ms. 17-03-18 03:49:09.854 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms. 17-03-18 03:49:09.854 -07 000000455 INF: Camera: CopyActivePixFullImage start. 17-03-18 03:49:09.854 -07 000000581 INF: Camera: sBCa_ReadImage(785074704, 2684358704, 0x0, 418435064) end. Duration was 399 ms. 17-03-18 03:49:09.854 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-18 03:49:09.854 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms. 17-03-18 03:49:09.854 -07 000000581 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms. 17-03-18 03:49:09.854 -07 000000581 INF: Camera: CopyActivePixFullImage start. 17-03-18 03:49:09.864 -07 000000581 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-18 03:49:09.864 -07 000000581 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms. 17-03-18 03:49:09.994 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1144 17-03-18 03:49:09.994 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1144 17-03-18 03:49:09.994 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-18 03:49:09.994 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-18 03:49:09.994 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 2719780968, 0x0, 391868352) start. 17-03-18 03:49:09.994 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1144 17-03-18 03:49:09.994 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1144 17-03-18 03:49:09.994 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-18 03:49:10.134 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-18 03:49:10.134 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) start. 17-03-18 03:49:10.184 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP 1337 17-03-18 03:49:10.184 -07 000000444 INF: FPGA: Recv CAMDBLSNAP 17-03-18 03:49:10.184 -07 000000610 INF: FPGA: 'CAMDBLSNAP 411 411 198 198 36345 150' command took 2 ms to send, 1338 ms to get response, and 1343 ms overall 17-03-18 03:49:10.194 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880 17-03-18 03:49:10.194 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 19 at Y-position 74.0078125, Z-Position -0.165569078125558. ------ 17-03-18 03:49:10.194 -07 000000455 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-18 03:49:10.194 -07 000000626 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.8526 mm, moving Z to -0.17141 mm 17-03-18 03:49:10.194 -07 000000626 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move 17-03-18 03:49:10.194 -07 000000382 INF: Y Motor: Entering MoveAbsStepped (target = 119764 steps, sync = True, waitForSettling = True) 17-03-18 03:49:10.194 -07 000000382 INF: Y Motor: Moving to 74.8526 mm, started at 74.0078 mm, delta = 0.8448 mm 17-03-18 03:49:10.194 -07 000000569 INF: Z Motor: Entering MoveAbsStepped (DAC = 37444, sync = True, waitForSettling = False) 17-03-18 03:49:10.194 -07 000000569 INF: Z Motor: Moving to -0.171408 mm, started at -0.165569 mm, distance = -5.84 um 17-03-18 03:49:10.194 -07 000000579 INF: FPGA: Recv FOCMRRCUR 17-03-18 03:49:10.204 -07 000000455 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall 17-03-18 03:49:10.204 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 03:49:10.204 -07 000000579 INF: FPGA: Recv YRDPOS 151568 17-03-18 03:49:10.214 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 13 ms overall 17-03-18 03:49:10.214 -07 000000382 INF: Y Motor: Encoder = 151568 = motor step 118412.5 = 74.0078 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 03:49:10.214 -07 000000382 INF: Y Motor: Last commanded position = 74.0226 mm (118436.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True 17-03-18 03:49:10.214 -07 000000382 INF: Y Motor: Moving 1352 steps-30 17-03-18 03:49:10.214 -07 000000569 INF: FPGA: Xmit ZDACW 37444\n [Z Motor] 17-03-18 03:49:10.214 -07 000000444 INF: FPGA: Recv ZDACW 17-03-18 03:49:10.224 -07 000000455 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror] 17-03-18 03:49:10.224 -07 000000569 INF: FPGA: 'ZDACW 37444' command took 1 ms to send, 0 ms to get response, and 22 ms overall 17-03-18 03:49:10.234 -07 000000382 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor] 17-03-18 03:49:10.244 -07 000000569 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-18 03:49:10.244 -07 000000581 INF: FPGA: Recv ZDACR 37444 17-03-18 03:49:10.254 -07 000000569 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall 17-03-18 03:49:10.254 -07 000000569 INF: Z Motor: MoveAbsStepped took 53 ms (did NOT wait for settling yet)) 17-03-18 03:49:10.404 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 2719780968, 0x0, 391868352) end. Duration was 405 ms. 17-03-18 03:49:10.404 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 406 ms. 17-03-18 03:49:10.404 -07 000000467 INF: Camera: CopyActivePixFullImage start. 17-03-18 03:49:10.404 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms. 17-03-18 03:49:10.404 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 412 ms. 17-03-18 03:49:10.424 -07 000000569 INF: FPGA: Recv FOCMRRFOC 17-03-18 03:49:10.424 -07 000000455 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall 17-03-18 03:49:10.534 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) end. Duration was 392 ms. 17-03-18 03:49:10.534 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 392 ms. 17-03-18 03:49:10.534 -07 000000461 INF: Camera: CopyActivePixFullImage start. 17-03-18 03:49:10.534 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms. 17-03-18 03:49:10.534 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 539 ms. 17-03-18 03:49:10.604 -07 000000581 INF: FPGA: Recv YMVTILE 17-03-18 03:49:10.604 -07 000000382 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall 17-03-18 03:49:10.634 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 03:49:10.644 -07 000000467 INF: FPGA: Recv YRDPOS 153254 17-03-18 03:49:10.644 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall 17-03-18 03:49:10.644 -07 000000382 INF: Y Motor: Encoder = 153254 = motor step 119729.7 = 74.8311 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 03:49:10.644 -07 000000382 INF: Y Motor: Position error before settling (table move) = -44 encoder counts (-0.021 mm) 17-03-18 03:49:10.644 -07 000000382 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.845 mm, average velocity = 2.128 mm/sec 17-03-18 03:49:11.134 -07 000000444 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 117, FrontChillerTemperature: 3.99219, 17-03-18 03:49:11.594 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 03:49:11.594 -07 000000461 INF: FPGA: Recv YRDPOS 153255 17-03-18 03:49:11.604 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-18 03:49:11.604 -07 000000382 INF: Y Motor: Encoder = 153255 = motor step 119730.5 = 74.8315 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 03:49:11.614 -07 000000569 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-18 03:49:11.614 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 116. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1683, R2=1752, Total=3435. Warn if over 250 bubbles per interval. 17-03-18 03:49:11.624 -07 000000382 INF: Y Motor: After move to 74.852608, error = -0.021065, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm 17-03-18 03:49:11.624 -07 000000382 INF: Y Motor: Position error after settling (table move) = -43 encoder counts (-0.021 mm), Delta during settling = 1 counts (0.000 mm) 17-03-18 03:49:11.624 -07 000000382 INF: Y Motor: Moved to 74.8315 after 1428 ms (table move) 17-03-18 03:49:11.624 -07 000000626 INF: Z Motor: EndOfMoveAbsStepped: target = -0.171408 mm (DAC = 37444) 17-03-18 03:49:11.634 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:49:11.634 -07 000000382 INF: FPGA: Recv ZSGSRD 35969 17-03-18 03:49:11.644 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:11.654 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:49:11.654 -07 000000569 INF: FPGA: Recv ZSGSRD 35975 17-03-18 03:49:11.664 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall 17-03-18 03:49:11.664 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:49:11.664 -07 000000569 INF: FPGA: Recv ZSGSRD 35975 17-03-18 03:49:11.674 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:11.694 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:49:11.694 -07 000000461 INF: FPGA: Recv ZSGSRD 35973 17-03-18 03:49:11.704 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall 17-03-18 03:49:11.704 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:49:11.704 -07 000000461 INF: FPGA: Recv ZSGSRD 35973 17-03-18 03:49:11.714 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:11.714 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:49:11.714 -07 000000461 INF: FPGA: Recv ZSGSRD 35960 17-03-18 03:49:11.724 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:11.724 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:49:11.724 -07 000000382 INF: FPGA: Recv ZSGSRD 35972 17-03-18 03:49:11.734 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:11.734 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:49:11.734 -07 000000569 INF: FPGA: Recv ZSGSRD 35973 17-03-18 03:49:11.744 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:11.744 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:49:11.744 -07 000000461 INF: FPGA: Recv ZSGSRD 35979 17-03-18 03:49:11.754 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:11.754 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:49:11.754 -07 000000461 INF: FPGA: Recv ZSGSRD 35973 17-03-18 03:49:11.764 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:11.764 -07 000000626 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-18 03:49:11.764 -07 000000461 INF: FPGA: Recv ZPIEZORD 31954 17-03-18 03:49:11.774 -07 000000626 INF: FPGA: 'ZPIEZORD' command took 1 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:11.774 -07 000000626 INF: Z Motor: Piezo is near 48.3 V (nominally 0 to 100 V), expect near 57.1 V, since DAC is at 5.714 V. Piezo Error = -8.9 V. 17-03-18 03:49:11.774 -07 000000626 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.4 um, Read 10 ADC samples: Avg = 35972 (-170.5 uncal um), Error = 0.9 uncal um, Median = 35973 (-170.5 uncal um), StdDev = 5 (0.0 uncal um), Range = 19 (0.1 uncal um), Min = 35960 (-170.5 uncal um), Max = 35979 (-170.6 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 12 (0.1 uncal um) 17-03-18 03:49:11.774 -07 000000626 INF: Z Motor: ADC noise = 12, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35972, posNoise = 7, negNoise = 12 17-03-18 03:49:11.774 -07 000000626 INF: Z Motor: After move to -0.171408, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-18 03:49:11.774 -07 000000626 INF: Z Motor: Settle wait time = 1432 ms, measure time = 141 ms (allowed 150 ms), total time = 1573 ms 17-03-18 03:49:11.774 -07 000000626 INF: Z Motor: Waiting extra 9 ms after reading position to reach expected total of 150 ms 17-03-18 03:49:11.784 -07 000000626 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1585 ms 17-03-18 03:49:11.784 -07 000000626 INF: Y Motor: Restored settling times back to 3000 or 1100 ms 17-03-18 03:49:11.784 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-18 03:49:11.784 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-18 03:49:11.784 -07 000000461 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-18 03:49:11.784 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-18 03:49:11.784 -07 000000444 INF: Disarm and arm camera sensor 0: ROITrigger start. 17-03-18 03:49:11.784 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-18 03:49:11.784 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms. 17-03-18 03:49:11.784 -07 000000444 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start. 17-03-18 03:49:11.794 -07 000000444 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms. 17-03-18 03:49:11.794 -07 000000444 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start. 17-03-18 03:49:11.794 -07 000000444 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms. 17-03-18 03:49:11.794 -07 000000444 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms. 17-03-18 03:49:11.804 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera] 17-03-18 03:49:11.844 -07 000000438 INF: FPGA: Recv @CAMSNAP turning led on 40 17-03-18 03:49:12.144 -07 000000382 INF: FPGA: Recv @CAMSNAP img rdy 340 17-03-18 03:49:12.144 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340 17-03-18 03:49:12.144 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start. 17-03-18 03:49:12.144 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 639799168, 0x0, 559484976) start. 17-03-18 03:49:12.184 -07 000000382 INF: FPGA: Recv @CAMSNAP 380 17-03-18 03:49:12.184 -07 000000461 INF: FPGA: Recv CAMSNAP 17-03-18 03:49:12.184 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 384 ms overall 17-03-18 03:49:12.264 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 639799168, 0x0, 559484976) end. Duration was 116 ms. 17-03-18 03:49:12.264 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-18 03:49:12.264 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms. 17-03-18 03:49:12.264 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms. 17-03-18 03:49:12.284 -07 000000382 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-18 03:49:12.284 -07 000000444 INF: Autofocus start 17-03-18 03:49:12.284 -07 000000444 INF: MeasureProfile start 17-03-18 03:49:12.284 -07 000000569 INF: FPGA: Recv FOCMRRCUR 17-03-18 03:49:12.294 -07 000000382 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall 17-03-18 03:49:12.294 -07 000000382 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror] 17-03-18 03:49:12.294 -07 000000444 INF: MeasureProfile done 17-03-18 03:49:12.294 -07 000000444 INF: X=96 Z correction [um]=0.4193256 17-03-18 03:49:12.294 -07 000000444 INF: Autofocus finished 17-03-18 03:49:12.494 -07 000000461 INF: FPGA: Recv FOCMRRIMG 17-03-18 03:49:12.494 -07 000000382 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall 17-03-18 03:49:12.494 -07 000000610 INF: ------------ Scan Snapping tile 19 at Y-position 74.83154296875, Z-position -0.17141511117456. ---------- 17-03-18 03:49:12.494 -07 000000610 INF: Cycle 117 Tile 19 Exposure Settings A 411 G 198 T 198 C 411 17-03-18 03:49:12.504 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36048, sync = True, waitForSettling = True) 17-03-18 03:49:12.504 -07 000000610 INF: Z Motor: Moving to -0.165017 mm, started at -0.171415 mm, distance = 6.40 um 17-03-18 03:49:12.504 -07 000000610 INF: FPGA: Xmit ZDACW 36048\n [Z Motor] 17-03-18 03:49:12.504 -07 000000569 INF: FPGA: Recv ZDACW 17-03-18 03:49:12.514 -07 000000610 INF: FPGA: 'ZDACW 36048' command took 0 ms to send, 0 ms to get response, and 8 ms overall 17-03-18 03:49:12.514 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-18 03:49:12.514 -07 000000461 INF: FPGA: Recv ZDACR 36048 17-03-18 03:49:12.524 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:12.524 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-18 03:49:12.674 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:49:12.674 -07 000000626 INF: FPGA: Recv ZSGSRD 34980 17-03-18 03:49:12.684 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:12.684 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:49:12.684 -07 000000444 INF: FPGA: Recv ZSGSRD 34978 17-03-18 03:49:12.694 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:12.694 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:49:12.694 -07 000000461 INF: FPGA: Recv ZSGSRD 34976 17-03-18 03:49:12.704 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:12.704 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:49:12.704 -07 000000438 INF: FPGA: Recv ZSGSRD 34978 17-03-18 03:49:12.714 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:12.714 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:49:12.714 -07 000000569 INF: FPGA: Recv ZSGSRD 34977 17-03-18 03:49:12.724 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:12.724 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:49:12.724 -07 000000444 INF: FPGA: Recv ZSGSRD 34979 17-03-18 03:49:12.734 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:12.734 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:49:12.734 -07 000000461 INF: FPGA: Recv ZSGSRD 34979 17-03-18 03:49:12.744 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:12.744 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:49:12.744 -07 000000444 INF: FPGA: Recv ZSGSRD 34974 17-03-18 03:49:12.754 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:12.754 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:49:12.754 -07 000000569 INF: FPGA: Recv ZSGSRD 34978 17-03-18 03:49:12.764 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:12.764 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:49:12.764 -07 000000382 INF: FPGA: Recv ZSGSRD 34977 17-03-18 03:49:12.774 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:12.774 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-18 03:49:12.774 -07 000000569 INF: FPGA: Recv ZPIEZORD 30642 17-03-18 03:49:12.784 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:12.784 -07 000000610 INF: Z Motor: Piezo is near 45.5 V (nominally 0 to 100 V), expect near 55.0 V, since DAC is at 5.501 V. Piezo Error = -9.5 V. 17-03-18 03:49:12.784 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -165.0 um, Read 10 ADC samples: Avg = 34978 (-164.2 uncal um), Error = 0.9 uncal um, Median = 34978 (-164.2 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 34974 (-164.1 uncal um), Max = 34980 (-164.2 uncal um), Pos Noise = 2 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um) 17-03-18 03:49:12.784 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 34978, posNoise = 2, negNoise = 4 17-03-18 03:49:12.784 -07 000000610 INF: Z Motor: After move to -0.165017, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-18 03:49:12.784 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms) 17-03-18 03:49:12.784 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-18 03:49:12.784 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-18 03:49:12.784 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-18 03:49:12.784 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start. 17-03-18 03:49:12.784 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-18 03:49:12.784 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start. 17-03-18 03:49:12.784 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) start. 17-03-18 03:49:12.784 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms. 17-03-18 03:49:12.784 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start. 17-03-18 03:49:12.784 -07 000000444 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-18 03:49:12.784 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms. 17-03-18 03:49:12.784 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start. 17-03-18 03:49:12.794 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms. 17-03-18 03:49:12.794 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start. 17-03-18 03:49:12.794 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms. 17-03-18 03:49:12.794 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start. 17-03-18 03:49:12.804 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms. 17-03-18 03:49:12.804 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms. 17-03-18 03:49:12.804 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms. 17-03-18 03:49:12.804 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms. 17-03-18 03:49:12.804 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 411 411 198 198 36225 150\n [Camera] 17-03-18 03:49:13.004 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning red on 192 17-03-18 03:49:13.414 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 603 17-03-18 03:49:13.414 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 603 17-03-18 03:49:13.414 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-18 03:49:13.424 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 603 17-03-18 03:49:13.424 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-18 03:49:13.424 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2165554656, 0x0, 391868352) start. 17-03-18 03:49:13.424 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 603 17-03-18 03:49:13.424 -07 000000444 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-18 03:49:13.424 -07 000000444 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-18 03:49:13.424 -07 000000444 INF: Camera: sBCa_ReadImage(785074704, 2200976920, 0x0, 418435064) start. 17-03-18 03:49:13.604 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36225 796 17-03-18 03:49:13.754 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP turning grn on 946 17-03-18 03:49:13.814 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2165554656, 0x0, 391868352) end. Duration was 396 ms. 17-03-18 03:49:13.814 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms. 17-03-18 03:49:13.814 -07 000000569 INF: Camera: CopyActivePixFullImage start. 17-03-18 03:49:13.824 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-18 03:49:13.824 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms. 17-03-18 03:49:13.824 -07 000000444 INF: Camera: sBCa_ReadImage(785074704, 2200976920, 0x0, 418435064) end. Duration was 396 ms. 17-03-18 03:49:13.824 -07 000000444 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms. 17-03-18 03:49:13.824 -07 000000444 INF: Camera: CopyActivePixFullImage start. 17-03-18 03:49:13.824 -07 000000444 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-18 03:49:13.834 -07 000000444 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms. 17-03-18 03:49:13.954 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1144 17-03-18 03:49:13.954 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1144 17-03-18 03:49:13.954 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-18 03:49:13.954 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1144 17-03-18 03:49:13.954 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1144 17-03-18 03:49:13.954 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-18 03:49:14.084 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-18 03:49:14.084 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start. 17-03-18 03:49:14.084 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-18 03:49:14.084 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) start. 17-03-18 03:49:14.144 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP 1337 17-03-18 03:49:14.144 -07 000000444 INF: FPGA: Recv CAMDBLSNAP 17-03-18 03:49:14.144 -07 000000610 INF: FPGA: 'CAMDBLSNAP 411 411 198 198 36225 150' command took 2 ms to send, 1337 ms to get response, and 1344 ms overall 17-03-18 03:49:14.464 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) end. Duration was 385 ms. 17-03-18 03:49:14.464 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 385 ms. 17-03-18 03:49:14.464 -07 000000438 INF: Camera: CopyActivePixFullImage start. 17-03-18 03:49:14.474 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 388 ms. 17-03-18 03:49:14.474 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 389 ms. 17-03-18 03:49:14.474 -07 000000474 INF: Camera: CopyActivePixFullImage start. 17-03-18 03:49:14.474 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-18 03:49:14.474 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-18 03:49:14.474 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 517 ms. 17-03-18 03:49:14.474 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) start. 17-03-18 03:49:14.484 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 521 ms. 17-03-18 03:49:14.514 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) end. Duration was 42 ms. 17-03-18 03:49:14.514 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) start. 17-03-18 03:49:14.564 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) end. Duration was 42 ms. 17-03-18 03:49:14.564 -07 000000610 INF: Move compensator for Bottom-surface imaging. 17-03-18 03:49:14.564 -07 000000610 INF: FPGA: Xmit EMCUR 80\n [Compensator] 17-03-18 03:49:14.564 -07 000000461 INF: FPGA: Recv EMCUR 17-03-18 03:49:14.574 -07 000000610 INF: FPGA: 'EMCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall 17-03-18 03:49:14.574 -07 000000610 INF: FPGA: Xmit EMIN 20 40\n [Compensator] 17-03-18 03:49:15.074 -07 000000461 INF: FPGA: Recv EMIN 17-03-18 03:49:15.074 -07 000000610 INF: FPGA: 'EMIN 20 40' command took 0 ms to send, 493 ms to get response, and 502 ms overall 17-03-18 03:49:15.074 -07 000000610 INF: FPGA: Xmit EMCUR 60\n [Compensator] 17-03-18 03:49:15.074 -07 000000444 INF: FPGA: Recv EMCUR 17-03-18 03:49:15.084 -07 000000610 INF: FPGA: 'EMCUR 60' command took 0 ms to send, 0 ms to get response, and 6 ms overall 17-03-18 03:49:15.084 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503 17-03-18 03:49:15.084 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 1 at Y-position 74.83154296875, Z-Position -0.16502944430565. ------ 17-03-18 03:49:15.084 -07 000000382 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-18 03:49:15.084 -07 000000606 INF: Y Motor: MoveYZ optimized starting. Moving Y to 59.9126 mm, moving Z to -0.13949 mm 17-03-18 03:49:15.084 -07 000000606 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move 17-03-18 03:49:15.084 -07 000000569 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True) 17-03-18 03:49:15.084 -07 000000569 INF: Y Motor: Moving to 59.9126 mm, started at 74.8315 mm, delta = -14.9189 mm 17-03-18 03:49:15.084 -07 000000626 INF: FPGA: Recv FOCMRRCUR 17-03-18 03:49:15.094 -07 000000382 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall 17-03-18 03:49:15.094 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 03:49:15.094 -07 000000461 INF: Z Motor: Entering MoveAbsStepped (DAC = 30471, sync = True, waitForSettling = False) 17-03-18 03:49:15.094 -07 000000461 INF: Z Motor: Moving to -0.139487 mm, started at -0.165029 mm, distance = 25.54 um 17-03-18 03:49:15.094 -07 000000438 INF: FPGA: Recv YRDPOS 153256 17-03-18 03:49:15.104 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-18 03:49:15.104 -07 000000569 INF: Y Motor: Encoder = 153256 = motor step 119731.3 = 74.8320 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 03:49:15.104 -07 000000382 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror] 17-03-18 03:49:15.104 -07 000000569 INF: Y Motor: Last commanded position = 74.8526 mm (119764.2 steps), delta from last commanded position = -14.9400 mm (-23904.0 steps). UsingTableMove = False 17-03-18 03:49:15.104 -07 000000569 INF: Y Motor: Moving to 122701 encoder counts 17-03-18 03:49:15.114 -07 000000461 INF: FPGA: Xmit ZDACW 30471\n [Z Motor] 17-03-18 03:49:15.114 -07 000000626 INF: FPGA: Recv ZDACW 17-03-18 03:49:15.124 -07 000000569 INF: FPGA: Xmit YMVTO 122701\n [Y Motor] 17-03-18 03:49:15.124 -07 000000461 INF: FPGA: 'ZDACW 30471' command took 0 ms to send, 0 ms to get response, and 29 ms overall 17-03-18 03:49:15.134 -07 000000461 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-18 03:49:15.134 -07 000000474 INF: FPGA: Recv ZDACR 30471 17-03-18 03:49:15.144 -07 000000461 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall 17-03-18 03:49:15.144 -07 000000461 INF: Z Motor: MoveAbsStepped took 49 ms (did NOT wait for settling yet)) 17-03-18 03:49:15.304 -07 000000626 INF: FPGA: Recv FOCMRRFOC 17-03-18 03:49:15.304 -07 000000382 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 212 ms overall 17-03-18 03:49:16.494 -07 000000438 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 117, FrontChillerTemperature: 4.009895, 17-03-18 03:49:16.614 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-18 03:49:16.614 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 116. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1683, R2=1752, Total=3435. Warn if over 250 bubbles per interval. 17-03-18 03:49:16.744 -07 000000480 INF: FPGA: Recv YMVTO 122703 23903 17-03-18 03:49:16.744 -07 000000569 INF: FPGA: 'YMVTO 122701' command took 0 ms to send, 1618 ms to get response, and 1643 ms overall 17-03-18 03:49:16.744 -07 000000569 INF: Y Motor: Position error before settling = 2 encoder counts (0.001 mm) 17-03-18 03:49:16.744 -07 000000569 INF: Y Motor: To move from 74.832 to 59.913 (-14.919 mm) should take 23871 steps, but required 23903 steps (14.939 mm). Slippage = 0.020 mm (0.00%). 17-03-18 03:49:16.744 -07 000000569 INF: Y Motor: FPGA move command 'YMVTO 122701' took 1643 ms, distance = 14.919 mm, average velocity = 9.080 mm/sec 17-03-18 03:49:19.594 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 03:49:19.594 -07 000000626 INF: FPGA: Recv YRDPOS 122697 17-03-18 03:49:19.604 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-18 03:49:19.604 -07 000000569 INF: Y Motor: Encoder = 122697 = motor step 95857.0 = 59.9106 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 03:49:19.634 -07 000000569 INF: Y Motor: After move to 59.912609, error = -0.001965, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm 17-03-18 03:49:19.634 -07 000000569 INF: Y Motor: Position error after settling = -4 encoder counts (-0.002 mm), Delta during settling = -6 counts (-0.003 mm) 17-03-18 03:49:19.634 -07 000000569 INF: Y Motor: Moved to 59.9106 after 4549 ms 17-03-18 03:49:19.644 -07 000000606 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139487 mm (DAC = 30471) 17-03-18 03:49:19.644 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:49:19.644 -07 000000480 INF: FPGA: Recv ZSGSRD 31003 17-03-18 03:49:19.654 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall 17-03-18 03:49:19.654 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:49:19.654 -07 000000444 INF: FPGA: Recv ZSGSRD 31002 17-03-18 03:49:19.664 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:19.664 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:49:19.664 -07 000000461 INF: FPGA: Recv ZSGSRD 31001 17-03-18 03:49:19.674 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:19.674 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:49:19.674 -07 000000438 INF: FPGA: Recv ZSGSRD 31000 17-03-18 03:49:19.684 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:19.684 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:49:19.684 -07 000000480 INF: FPGA: Recv ZSGSRD 31005 17-03-18 03:49:19.694 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:19.694 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:49:19.694 -07 000000444 INF: FPGA: Recv ZSGSRD 31003 17-03-18 03:49:19.704 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:19.704 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:49:19.704 -07 000000461 INF: FPGA: Recv ZSGSRD 30998 17-03-18 03:49:19.714 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:19.714 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:49:19.714 -07 000000569 INF: FPGA: Recv ZSGSRD 31005 17-03-18 03:49:19.724 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:19.724 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:49:19.724 -07 000000626 INF: FPGA: Recv ZSGSRD 30998 17-03-18 03:49:19.734 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:19.734 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:49:19.734 -07 000000461 INF: FPGA: Recv ZSGSRD 31006 17-03-18 03:49:19.744 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:19.744 -07 000000606 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-18 03:49:19.744 -07 000000626 INF: FPGA: Recv ZPIEZORD 26470 17-03-18 03:49:19.754 -07 000000606 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:19.754 -07 000000606 INF: Z Motor: Piezo is near 36.5 V (nominally 0 to 100 V), expect near 46.5 V, since DAC is at 4.650 V. Piezo Error = -9.9 V. 17-03-18 03:49:19.754 -07 000000606 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.5 um, Read 10 ADC samples: Avg = 31002 (-138.7 uncal um), Error = 0.8 uncal um, Median = 31002 (-138.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 30998 (-138.7 uncal um), Max = 31006 (-138.7 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um) 17-03-18 03:49:19.754 -07 000000606 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 31002, posNoise = 4, negNoise = 4 17-03-18 03:49:19.754 -07 000000606 INF: Z Motor: After move to -0.139487, error = 0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-18 03:49:19.754 -07 000000606 INF: Z Motor: Settle wait time = 4551 ms, measure time = 108 ms (allowed 150 ms), total time = 4659 ms 17-03-18 03:49:19.754 -07 000000606 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms 17-03-18 03:49:19.804 -07 000000606 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 4712 ms 17-03-18 03:49:19.804 -07 000000606 INF: Y Motor: Restored settling times back to 3000 or 1100 ms 17-03-18 03:49:19.804 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-18 03:49:19.804 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-18 03:49:19.804 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-18 03:49:19.804 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-18 03:49:19.804 -07 000000444 INF: Disarm and arm camera sensor 0: ROITrigger start. 17-03-18 03:49:19.804 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-18 03:49:19.804 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms. 17-03-18 03:49:19.804 -07 000000444 INF: Camera: sBCa_SetPowerMode(785074288, 1) start. 17-03-18 03:49:19.824 -07 000000444 INF: Camera: sBCa_SetPowerMode(785074288, 1) end. Duration was 21 ms. 17-03-18 03:49:19.824 -07 000000444 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start. 17-03-18 03:49:19.834 -07 000000444 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms. 17-03-18 03:49:19.834 -07 000000444 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start. 17-03-18 03:49:19.844 -07 000000444 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms. 17-03-18 03:49:19.844 -07 000000444 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 39 ms. 17-03-18 03:49:19.844 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera] 17-03-18 03:49:19.894 -07 000000474 INF: FPGA: Recv @CAMSNAP turning led on 40 17-03-18 03:49:20.194 -07 000000474 INF: FPGA: Recv @CAMSNAP img rdy 340 17-03-18 03:49:20.194 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340 17-03-18 03:49:20.194 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start. 17-03-18 03:49:20.194 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 639799168, 0x0, 559484976) start. 17-03-18 03:49:20.234 -07 000000438 INF: FPGA: Recv @CAMSNAP 380 17-03-18 03:49:20.234 -07 000000461 INF: FPGA: Recv CAMSNAP 17-03-18 03:49:20.234 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 374 ms to get response, and 384 ms overall 17-03-18 03:49:20.324 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 639799168, 0x0, 559484976) end. Duration was 126 ms. 17-03-18 03:49:20.324 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-18 03:49:20.324 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms. 17-03-18 03:49:20.324 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms. 17-03-18 03:49:20.334 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-18 03:49:20.334 -07 000000480 INF: Image SNR check: start 17-03-18 03:49:20.334 -07 000000461 INF: FPGA: Recv FOCMRRCUR 17-03-18 03:49:20.344 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall 17-03-18 03:49:20.344 -07 000000626 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror] 17-03-18 03:49:20.344 -07 000000480 INF: Image SNR check: pass [peak (Max-Min)=129.19] 17-03-18 03:49:20.344 -07 000000480 INF: Autofocus start 17-03-18 03:49:20.344 -07 000000480 INF: MeasureProfile start 17-03-18 03:49:20.364 -07 000000480 INF: MeasureProfile done 17-03-18 03:49:20.364 -07 000000480 INF: X=-11 Z correction [um]=-0.05694899 17-03-18 03:49:20.364 -07 000000480 INF: Autofocus finished 17-03-18 03:49:20.544 -07 000000606 INF: FPGA: Recv FOCMRRIMG 17-03-18 03:49:20.544 -07 000000626 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall 17-03-18 03:49:20.544 -07 000000610 INF: ------------ Scan Snapping tile 1 at Y-position 59.91064453125, Z-position -0.139486776830008. ---------- 17-03-18 03:49:20.554 -07 000000610 INF: Cycle 117 Tile 1 Exposure Settings A 411 G 198 T 198 C 411 17-03-18 03:49:20.554 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28971, sync = True, waitForSettling = True) 17-03-18 03:49:20.554 -07 000000610 INF: Z Motor: Moving to -0.132621 mm, started at -0.139487 mm, distance = 6.87 um 17-03-18 03:49:20.554 -07 000000610 INF: FPGA: Xmit ZDACW 28971\n [Z Motor] 17-03-18 03:49:20.554 -07 000000480 INF: FPGA: Recv ZDACW 17-03-18 03:49:20.564 -07 000000610 INF: FPGA: 'ZDACW 28971' command took 0 ms to send, 0 ms to get response, and 7 ms overall 17-03-18 03:49:20.564 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-18 03:49:20.564 -07 000000461 INF: FPGA: Recv ZDACR 28971 17-03-18 03:49:20.574 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:20.574 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-18 03:49:20.724 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:49:20.724 -07 000000382 INF: FPGA: Recv ZSGSRD 29934 17-03-18 03:49:20.734 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-18 03:49:20.734 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:49:20.734 -07 000000606 INF: FPGA: Recv ZSGSRD 29932 17-03-18 03:49:20.744 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:20.744 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:49:20.744 -07 000000474 INF: FPGA: Recv ZSGSRD 29932 17-03-18 03:49:20.754 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:20.754 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:49:20.754 -07 000000626 INF: FPGA: Recv ZSGSRD 29940 17-03-18 03:49:20.764 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:20.764 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:49:20.764 -07 000000438 INF: FPGA: Recv ZSGSRD 29930 17-03-18 03:49:20.774 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:20.774 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:49:20.774 -07 000000444 INF: FPGA: Recv ZSGSRD 29933 17-03-18 03:49:20.784 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:20.784 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:49:20.784 -07 000000480 INF: FPGA: Recv ZSGSRD 29935 17-03-18 03:49:20.794 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:20.794 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:49:20.794 -07 000000444 INF: FPGA: Recv ZSGSRD 29934 17-03-18 03:49:20.804 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:20.804 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:49:20.804 -07 000000480 INF: FPGA: Recv ZSGSRD 29932 17-03-18 03:49:20.814 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:20.814 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:49:20.814 -07 000000461 INF: FPGA: Recv ZSGSRD 29930 17-03-18 03:49:20.824 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:20.824 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-18 03:49:20.824 -07 000000606 INF: FPGA: Recv ZPIEZORD 25316 17-03-18 03:49:20.834 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:20.834 -07 000000610 INF: Z Motor: Piezo is near 34.1 V (nominally 0 to 100 V), expect near 44.2 V, since DAC is at 4.421 V. Piezo Error = -10.1 V. 17-03-18 03:49:20.834 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.6 um, Read 10 ADC samples: Avg = 29933 (-131.8 uncal um), Error = 0.8 uncal um, Median = 29932 (-131.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29930 (-131.8 uncal um), Max = 29940 (-131.9 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um) 17-03-18 03:49:20.834 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29933, posNoise = 7, negNoise = 3 17-03-18 03:49:20.834 -07 000000610 INF: Z Motor: After move to -0.132621, error = 0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-18 03:49:20.834 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms) 17-03-18 03:49:20.834 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-18 03:49:20.834 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-18 03:49:20.834 -07 000000444 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-18 03:49:20.834 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-18 03:49:20.834 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start. 17-03-18 03:49:20.834 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start. 17-03-18 03:49:20.834 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) start. 17-03-18 03:49:20.834 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-18 03:49:20.834 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms. 17-03-18 03:49:20.834 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start. 17-03-18 03:49:20.834 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms. 17-03-18 03:49:20.834 -07 000000480 INF: Camera: sBCa_SetPowerMode(785074704, 1) start. 17-03-18 03:49:20.844 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms. 17-03-18 03:49:20.844 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start. 17-03-18 03:49:20.854 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms. 17-03-18 03:49:20.854 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms. 17-03-18 03:49:20.864 -07 000000480 INF: Camera: sBCa_SetPowerMode(785074704, 1) end. Duration was 21 ms. 17-03-18 03:49:20.864 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start. 17-03-18 03:49:20.864 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms. 17-03-18 03:49:20.864 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start. 17-03-18 03:49:20.874 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms. 17-03-18 03:49:20.874 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 34 ms. 17-03-18 03:49:20.874 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 411 411 198 198 29148 150\n [Camera] 17-03-18 03:49:21.074 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP turning red on 192 17-03-18 03:49:21.484 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 603 17-03-18 03:49:21.484 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 603 17-03-18 03:49:21.484 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-18 03:49:21.484 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 603 17-03-18 03:49:21.484 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 603 17-03-18 03:49:21.494 -07 000000444 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-18 03:49:21.494 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-18 03:49:21.494 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 2169959960, 0x0, 391868352) start. 17-03-18 03:49:21.494 -07 000000444 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-18 03:49:21.494 -07 000000444 INF: Camera: sBCa_ReadImage(785074704, 2205382224, 0x0, 418435064) start. 17-03-18 03:49:21.614 -07 000000438 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-18 03:49:21.614 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 116. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1683, R2=1752, Total=3435. Warn if over 250 bubbles per interval. 17-03-18 03:49:21.684 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29148 796 17-03-18 03:49:21.824 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP turning grn on 946 17-03-18 03:49:21.854 -07 000000474 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 117, FrontChillerTemperature: 4.015368, 17-03-18 03:49:21.874 -07 000000444 INF: Camera: sBCa_ReadImage(785074704, 2205382224, 0x0, 418435064) end. Duration was 375 ms. 17-03-18 03:49:21.874 -07 000000444 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms. 17-03-18 03:49:21.874 -07 000000444 INF: Camera: CopyActivePixFullImage start. 17-03-18 03:49:21.874 -07 000000444 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-18 03:49:21.884 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 2169959960, 0x0, 391868352) end. Duration was 387 ms. 17-03-18 03:49:21.884 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 388 ms. 17-03-18 03:49:21.884 -07 000000480 INF: Camera: CopyActivePixFullImage start. 17-03-18 03:49:21.884 -07 000000444 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms. 17-03-18 03:49:21.884 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-18 03:49:21.884 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 397 ms. 17-03-18 03:49:22.024 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1144 17-03-18 03:49:22.024 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1144 17-03-18 03:49:22.024 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-18 03:49:22.024 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-18 03:49:22.024 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) start. 17-03-18 03:49:22.034 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1144 17-03-18 03:49:22.034 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1144 17-03-18 03:49:22.034 -07 000000444 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-18 03:49:22.034 -07 000000444 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-18 03:49:22.034 -07 000000444 INF: Camera: sBCa_ReadImage(785074704, 2369425112, 0x0, 418435064) start. 17-03-18 03:49:22.214 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP 1336 17-03-18 03:49:22.224 -07 000000606 INF: FPGA: Recv CAMDBLSNAP 17-03-18 03:49:22.224 -07 000000610 INF: FPGA: 'CAMDBLSNAP 411 411 198 198 29148 150' command took 2 ms to send, 1341 ms to get response, and 1348 ms overall 17-03-18 03:49:22.224 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503 17-03-18 03:49:22.224 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 2 at Y-position 59.91064453125, Z-Position -0.132619294050466. ------ 17-03-18 03:49:22.224 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-18 03:49:22.224 -07 000000438 INF: Y Motor: MoveYZ optimized starting. Moving Y to 60.7426 mm, moving Z to -0.13909 mm 17-03-18 03:49:22.224 -07 000000438 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move 17-03-18 03:49:22.224 -07 000000474 INF: Y Motor: Entering MoveAbsStepped (target = 97188 steps, sync = True, waitForSettling = True) 17-03-18 03:49:22.224 -07 000000461 INF: Z Motor: Entering MoveAbsStepped (DAC = 30385, sync = True, waitForSettling = False) 17-03-18 03:49:22.224 -07 000000461 INF: Z Motor: Moving to -0.139094 mm, started at -0.132619 mm, distance = -6.47 um 17-03-18 03:49:22.224 -07 000000474 INF: Y Motor: Moving to 60.7426 mm, started at 59.9106 mm, delta = 0.8320 mm 17-03-18 03:49:22.224 -07 000000382 INF: FPGA: Recv FOCMRRCUR 17-03-18 03:49:22.234 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall 17-03-18 03:49:22.234 -07 000000461 INF: FPGA: Xmit ZDACW 30385\n [Z Motor] 17-03-18 03:49:22.234 -07 000000455 INF: FPGA: Recv ZDACW 17-03-18 03:49:22.244 -07 000000461 INF: FPGA: 'ZDACW 30385' command took 2 ms to send, 0 ms to get response, and 10 ms overall 17-03-18 03:49:22.244 -07 000000474 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 03:49:22.244 -07 000000501 INF: FPGA: Recv YRDPOS 122697 17-03-18 03:49:22.254 -07 000000569 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror] 17-03-18 03:49:22.254 -07 000000474 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 20 ms overall 17-03-18 03:49:22.254 -07 000000474 INF: Y Motor: Encoder = 122697 = motor step 95857.0 = 59.9106 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 03:49:22.254 -07 000000474 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True 17-03-18 03:49:22.254 -07 000000474 INF: Y Motor: Moving 1331 steps2 17-03-18 03:49:22.264 -07 000000461 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-18 03:49:22.264 -07 000000501 INF: FPGA: Recv ZDACR 30385 17-03-18 03:49:22.274 -07 000000474 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor] 17-03-18 03:49:22.274 -07 000000461 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 30 ms overall 17-03-18 03:49:22.274 -07 000000461 INF: Z Motor: MoveAbsStepped took 41 ms (did NOT wait for settling yet)) 17-03-18 03:49:22.414 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) end. Duration was 384 ms. 17-03-18 03:49:22.414 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms. 17-03-18 03:49:22.414 -07 000000480 INF: Camera: CopyActivePixFullImage start. 17-03-18 03:49:22.414 -07 000000444 INF: Camera: sBCa_ReadImage(785074704, 2369425112, 0x0, 418435064) end. Duration was 382 ms. 17-03-18 03:49:22.414 -07 000000444 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 383 ms. 17-03-18 03:49:22.414 -07 000000444 INF: Camera: CopyActivePixFullImage start. 17-03-18 03:49:22.414 -07 000000444 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-18 03:49:22.424 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms. 17-03-18 03:49:22.424 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 392 ms. 17-03-18 03:49:22.424 -07 000000444 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms. 17-03-18 03:49:22.454 -07 000000626 INF: FPGA: Recv FOCMRRFOC 17-03-18 03:49:22.454 -07 000000569 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 220 ms overall 17-03-18 03:49:22.644 -07 000000444 INF: FPGA: Recv YMVTILE 17-03-18 03:49:22.644 -07 000000474 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall 17-03-18 03:49:22.684 -07 000000474 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 03:49:22.694 -07 000000569 INF: FPGA: Recv YRDPOS 124381 17-03-18 03:49:22.694 -07 000000474 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall 17-03-18 03:49:22.694 -07 000000474 INF: Y Motor: Encoder = 124381 = motor step 97172.7 = 60.7329 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 03:49:22.694 -07 000000474 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm) 17-03-18 03:49:22.694 -07 000000474 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.832 mm, average velocity = 2.096 mm/sec 17-03-18 03:49:23.644 -07 000000474 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 03:49:23.644 -07 000000382 INF: FPGA: Recv YRDPOS 124381 17-03-18 03:49:23.654 -07 000000474 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-18 03:49:23.654 -07 000000474 INF: Y Motor: Encoder = 124381 = motor step 97172.7 = 60.7329 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 03:49:23.684 -07 000000474 INF: Y Motor: After move to 60.742607, error = -0.009697, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm 17-03-18 03:49:23.684 -07 000000474 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm) 17-03-18 03:49:23.684 -07 000000474 INF: Y Motor: Moved to 60.7329 after 1452 ms (table move) 17-03-18 03:49:23.684 -07 000000438 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139094 mm (DAC = 30385) 17-03-18 03:49:23.684 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:49:23.684 -07 000000474 INF: FPGA: Recv ZSGSRD 30944 17-03-18 03:49:23.694 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall 17-03-18 03:49:23.694 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:49:23.694 -07 000000382 INF: FPGA: Recv ZSGSRD 30946 17-03-18 03:49:23.704 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:23.704 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:49:23.704 -07 000000382 INF: FPGA: Recv ZSGSRD 30942 17-03-18 03:49:23.714 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:23.714 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:49:23.714 -07 000000444 INF: FPGA: Recv ZSGSRD 30942 17-03-18 03:49:23.724 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:23.724 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:49:23.724 -07 000000444 INF: FPGA: Recv ZSGSRD 30942 17-03-18 03:49:23.734 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:23.734 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:49:23.734 -07 000000382 INF: FPGA: Recv ZSGSRD 30946 17-03-18 03:49:23.744 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:23.744 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:49:23.744 -07 000000382 INF: FPGA: Recv ZSGSRD 30941 17-03-18 03:49:23.754 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:23.754 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:49:23.754 -07 000000382 INF: FPGA: Recv ZSGSRD 30934 17-03-18 03:49:23.764 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:23.764 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:49:23.764 -07 000000382 INF: FPGA: Recv ZSGSRD 30944 17-03-18 03:49:23.774 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:23.774 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:49:23.774 -07 000000382 INF: FPGA: Recv ZSGSRD 30941 17-03-18 03:49:23.784 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:23.784 -07 000000438 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-18 03:49:23.784 -07 000000474 INF: FPGA: Recv ZPIEZORD 26679 17-03-18 03:49:23.794 -07 000000438 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:23.794 -07 000000438 INF: Z Motor: Piezo is near 37.0 V (nominally 0 to 100 V), expect near 46.4 V, since DAC is at 4.636 V. Piezo Error = -9.4 V. 17-03-18 03:49:23.794 -07 000000438 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.1 um, Read 10 ADC samples: Avg = 30942 (-138.3 uncal um), Error = 0.8 uncal um, Median = 30942 (-138.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 30934 (-138.2 uncal um), Max = 30946 (-138.3 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um) 17-03-18 03:49:23.794 -07 000000438 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30942, posNoise = 4, negNoise = 8 17-03-18 03:49:23.794 -07 000000438 INF: Z Motor: After move to -0.139094, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-18 03:49:23.794 -07 000000438 INF: Z Motor: Settle wait time = 1456 ms, measure time = 105 ms (allowed 150 ms), total time = 1561 ms 17-03-18 03:49:23.794 -07 000000438 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms 17-03-18 03:49:23.844 -07 000000438 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1613 ms 17-03-18 03:49:23.844 -07 000000438 INF: Y Motor: Restored settling times back to 3000 or 1100 ms 17-03-18 03:49:23.844 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-18 03:49:23.844 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-18 03:49:23.844 -07 000000455 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-18 03:49:23.844 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-18 03:49:23.844 -07 000000438 INF: Disarm and arm camera sensor 0: ROITrigger start. 17-03-18 03:49:23.844 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-18 03:49:23.844 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-18 03:49:23.844 -07 000000438 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start. 17-03-18 03:49:23.854 -07 000000438 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms. 17-03-18 03:49:23.854 -07 000000438 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start. 17-03-18 03:49:23.864 -07 000000438 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms. 17-03-18 03:49:23.864 -07 000000438 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 14 ms. 17-03-18 03:49:23.864 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera] 17-03-18 03:49:23.904 -07 000000569 INF: FPGA: Recv @CAMSNAP turning led on 40 17-03-18 03:49:24.204 -07 000000444 INF: FPGA: Recv @CAMSNAP img rdy 340 17-03-18 03:49:24.204 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340 17-03-18 03:49:24.214 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start. 17-03-18 03:49:24.324 -07 000000438 INF: FPGA: Recv @CAMSNAP 380 17-03-18 03:49:24.324 -07 000000438 INF: FPGA: Recv CAMSNAP 17-03-18 03:49:24.324 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 451 ms to get response, and 456 ms overall 17-03-18 03:49:24.324 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2240804488, 0x0, 559484976) start. 17-03-18 03:49:24.444 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2240804488, 0x0, 559484976) end. Duration was 126 ms. 17-03-18 03:49:24.444 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-18 03:49:24.444 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms. 17-03-18 03:49:24.444 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 238 ms. 17-03-18 03:49:24.524 -07 000000444 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-18 03:49:24.524 -07 000000382 INF: Autofocus start 17-03-18 03:49:24.524 -07 000000382 INF: MeasureProfile start 17-03-18 03:49:24.524 -07 000000455 INF: FPGA: Recv FOCMRRCUR 17-03-18 03:49:24.534 -07 000000444 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall 17-03-18 03:49:24.534 -07 000000444 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror] 17-03-18 03:49:24.534 -07 000000382 INF: MeasureProfile done 17-03-18 03:49:24.534 -07 000000382 INF: X=-16 Z correction [um]=-0.08128808 17-03-18 03:49:24.534 -07 000000382 INF: Autofocus finished 17-03-18 03:49:24.734 -07 000000455 INF: FPGA: Recv FOCMRRIMG 17-03-18 03:49:24.734 -07 000000444 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall 17-03-18 03:49:24.734 -07 000000610 INF: ------------ Scan Snapping tile 2 at Y-position 60.73291015625, Z-position -0.139101324101503. ---------- 17-03-18 03:49:24.744 -07 000000610 INF: Cycle 117 Tile 2 Exposure Settings A 411 G 198 T 198 C 411 17-03-18 03:49:24.744 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28880, sync = True, waitForSettling = True) 17-03-18 03:49:24.744 -07 000000610 INF: Z Motor: Moving to -0.132204 mm, started at -0.139101 mm, distance = 6.90 um 17-03-18 03:49:24.744 -07 000000610 INF: FPGA: Xmit ZDACW 28880\n [Z Motor] 17-03-18 03:49:24.744 -07 000000561 INF: FPGA: Recv ZDACW 17-03-18 03:49:24.754 -07 000000610 INF: FPGA: 'ZDACW 28880' command took 0 ms to send, 0 ms to get response, and 7 ms overall 17-03-18 03:49:24.754 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-18 03:49:24.754 -07 000000606 INF: FPGA: Recv ZDACR 28880 17-03-18 03:49:24.764 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:24.764 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-18 03:49:24.914 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:49:24.914 -07 000000606 INF: FPGA: Recv ZSGSRD 29878 17-03-18 03:49:24.924 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:24.924 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:49:24.924 -07 000000444 INF: FPGA: Recv ZSGSRD 29872 17-03-18 03:49:24.934 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:24.934 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:49:24.934 -07 000000480 INF: FPGA: Recv ZSGSRD 29871 17-03-18 03:49:24.944 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:24.944 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:49:24.944 -07 000000382 INF: FPGA: Recv ZSGSRD 29870 17-03-18 03:49:24.954 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:24.954 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:49:24.954 -07 000000606 INF: FPGA: Recv ZSGSRD 29864 17-03-18 03:49:24.964 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:24.964 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:49:24.964 -07 000000438 INF: FPGA: Recv ZSGSRD 29872 17-03-18 03:49:24.974 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:24.974 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:49:24.974 -07 000000438 INF: FPGA: Recv ZSGSRD 29868 17-03-18 03:49:24.984 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:24.984 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:49:24.984 -07 000000461 INF: FPGA: Recv ZSGSRD 29869 17-03-18 03:49:24.994 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:24.994 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:49:24.994 -07 000000461 INF: FPGA: Recv ZSGSRD 29874 17-03-18 03:49:25.004 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:25.004 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:49:25.004 -07 000000438 INF: FPGA: Recv ZSGSRD 29867 17-03-18 03:49:25.014 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:25.014 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-18 03:49:25.014 -07 000000438 INF: FPGA: Recv ZPIEZORD 25245 17-03-18 03:49:25.024 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:25.024 -07 000000610 INF: Z Motor: Piezo is near 33.9 V (nominally 0 to 100 V), expect near 44.1 V, since DAC is at 4.407 V. Piezo Error = -10.1 V. 17-03-18 03:49:25.024 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.2 um, Read 10 ADC samples: Avg = 29870 (-131.4 uncal um), Error = 0.8 uncal um, Median = 29870 (-131.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 29864 (-131.4 uncal um), Max = 29878 (-131.5 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um) 17-03-18 03:49:25.024 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29870, posNoise = 8, negNoise = 6 17-03-18 03:49:25.024 -07 000000610 INF: Z Motor: After move to -0.132204, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-18 03:49:25.024 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms) 17-03-18 03:49:25.024 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-18 03:49:25.024 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-18 03:49:25.024 -07 000000480 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-18 03:49:25.024 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start. 17-03-18 03:49:25.024 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-18 03:49:25.024 -07 000000438 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-18 03:49:25.024 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start. 17-03-18 03:49:25.024 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) start. 17-03-18 03:49:25.024 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-18 03:49:25.024 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start. 17-03-18 03:49:25.024 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms. 17-03-18 03:49:25.024 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start. 17-03-18 03:49:25.034 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms. 17-03-18 03:49:25.034 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms. 17-03-18 03:49:25.034 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start. 17-03-18 03:49:25.034 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start. 17-03-18 03:49:25.044 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms. 17-03-18 03:49:25.044 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms. 17-03-18 03:49:25.044 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms. 17-03-18 03:49:25.044 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms. 17-03-18 03:49:25.044 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 411 411 198 198 29057 150\n [Camera] 17-03-18 03:49:25.244 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP turning red on 192 17-03-18 03:49:25.664 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 603 17-03-18 03:49:25.664 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 603 17-03-18 03:49:25.664 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-18 03:49:25.664 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 603 17-03-18 03:49:25.664 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 603 17-03-18 03:49:25.664 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-18 03:49:25.664 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-18 03:49:25.664 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 2165554656, 0x0, 391868352) start. 17-03-18 03:49:25.664 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-18 03:49:25.664 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2200976920, 0x0, 418435064) start. 17-03-18 03:49:25.854 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29057 796 17-03-18 03:49:26.004 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP turning grn on 946 17-03-18 03:49:26.064 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 2165554656, 0x0, 391868352) end. Duration was 396 ms. 17-03-18 03:49:26.064 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms. 17-03-18 03:49:26.064 -07 000000455 INF: Camera: CopyActivePixFullImage start. 17-03-18 03:49:26.064 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2200976920, 0x0, 418435064) end. Duration was 395 ms. 17-03-18 03:49:26.064 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms. 17-03-18 03:49:26.064 -07 000000501 INF: Camera: CopyActivePixFullImage start. 17-03-18 03:49:26.064 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-18 03:49:26.064 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms. 17-03-18 03:49:26.064 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-18 03:49:26.074 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms. 17-03-18 03:49:26.204 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1144 17-03-18 03:49:26.204 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1144 17-03-18 03:49:26.204 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-18 03:49:26.204 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1144 17-03-18 03:49:26.204 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1144 17-03-18 03:49:26.204 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-18 03:49:26.324 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-18 03:49:26.324 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) start. 17-03-18 03:49:26.324 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-18 03:49:26.324 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start. 17-03-18 03:49:26.394 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP 1337 17-03-18 03:49:26.394 -07 000000444 INF: FPGA: Recv CAMDBLSNAP 17-03-18 03:49:26.394 -07 000000610 INF: FPGA: 'CAMDBLSNAP 411 411 198 198 29057 150' command took 2 ms to send, 1333 ms to get response, and 1344 ms overall 17-03-18 03:49:26.394 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503 17-03-18 03:49:26.394 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 3 at Y-position 60.73291015625, Z-Position -0.132214568685535. ------ 17-03-18 03:49:26.394 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-18 03:49:26.394 -07 000000626 INF: Y Motor: MoveYZ optimized starting. Moving Y to 61.5726 mm, moving Z to -0.13892 mm 17-03-18 03:49:26.394 -07 000000626 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move 17-03-18 03:49:26.404 -07 000000480 INF: FPGA: Recv FOCMRRCUR 17-03-18 03:49:26.404 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 3 ms overall 17-03-18 03:49:26.404 -07 000000606 INF: Y Motor: Entering MoveAbsStepped (target = 98516 steps, sync = True, waitForSettling = True) 17-03-18 03:49:26.404 -07 000000606 INF: Y Motor: Moving to 61.5726 mm, started at 60.7329 mm, delta = 0.8397 mm 17-03-18 03:49:26.404 -07 000000501 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror] 17-03-18 03:49:26.404 -07 000000444 INF: Z Motor: Entering MoveAbsStepped (DAC = 30348, sync = True, waitForSettling = False) 17-03-18 03:49:26.404 -07 000000444 INF: Z Motor: Moving to -0.138924 mm, started at -0.132215 mm, distance = -6.71 um 17-03-18 03:49:26.414 -07 000000444 INF: FPGA: Xmit ZDACW 30348\n [Z Motor] 17-03-18 03:49:26.414 -07 000000480 INF: FPGA: Recv ZDACW 17-03-18 03:49:26.424 -07 000000444 INF: FPGA: 'ZDACW 30348' command took 0 ms to send, 0 ms to get response, and 16 ms overall 17-03-18 03:49:26.424 -07 000000606 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 03:49:26.424 -07 000000480 INF: FPGA: Recv YRDPOS 124382 17-03-18 03:49:26.434 -07 000000444 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-18 03:49:26.434 -07 000000606 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 26 ms overall 17-03-18 03:49:26.434 -07 000000606 INF: Y Motor: Encoder = 124382 = motor step 97173.4 = 60.7334 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 03:49:26.434 -07 000000480 INF: FPGA: Recv ZDACR 30348 17-03-18 03:49:26.434 -07 000000606 INF: Y Motor: Last commanded position = 60.7426 mm (97188.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True 17-03-18 03:49:26.444 -07 000000606 INF: Y Motor: Moving 1343 steps-20 17-03-18 03:49:26.444 -07 000000444 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall 17-03-18 03:49:26.444 -07 000000444 INF: Z Motor: MoveAbsStepped took 37 ms (did NOT wait for settling yet)) 17-03-18 03:49:26.444 -07 000000606 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor] 17-03-18 03:49:26.604 -07 000000382 INF: FPGA: Recv FOCMRRFOC 17-03-18 03:49:26.604 -07 000000501 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 195 ms to get response, and 202 ms overall 17-03-18 03:49:26.614 -07 000000501 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-18 03:49:26.614 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 116. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1683, R2=1752, Total=3435. Warn if over 250 bubbles per interval. 17-03-18 03:49:26.724 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 394 ms. 17-03-18 03:49:26.724 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms. 17-03-18 03:49:26.724 -07 000000561 INF: Camera: CopyActivePixFullImage start. 17-03-18 03:49:26.724 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) end. Duration was 395 ms. 17-03-18 03:49:26.724 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms. 17-03-18 03:49:26.724 -07 000000461 INF: Camera: CopyActivePixFullImage start. 17-03-18 03:49:26.724 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-18 03:49:26.724 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 522 ms. 17-03-18 03:49:26.724 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-18 03:49:26.734 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 526 ms. 17-03-18 03:49:26.814 -07 000000382 INF: FPGA: Recv YMVTILE 17-03-18 03:49:26.814 -07 000000606 INF: FPGA: 'YMVTILE 1327' command took 1 ms to send, 369 ms to get response, and 379 ms overall 17-03-18 03:49:26.864 -07 000000606 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 03:49:26.864 -07 000000438 INF: FPGA: Recv YRDPOS 126083 17-03-18 03:49:26.874 -07 000000606 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall 17-03-18 03:49:26.874 -07 000000606 INF: Y Motor: Encoder = 126083 = motor step 98502.3 = 61.5640 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 03:49:26.874 -07 000000606 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm) 17-03-18 03:49:26.874 -07 000000606 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 379 ms, distance = 0.840 mm, average velocity = 2.216 mm/sec 17-03-18 03:49:27.214 -07 000000444 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 117, FrontChillerTemperature: 4.020806, 17-03-18 03:49:27.824 -07 000000606 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 03:49:27.824 -07 000000444 INF: FPGA: Recv YRDPOS 126083 17-03-18 03:49:27.834 -07 000000606 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-18 03:49:27.834 -07 000000606 INF: Y Motor: Encoder = 126083 = motor step 98502.3 = 61.5640 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 03:49:27.854 -07 000000606 INF: Y Motor: After move to 61.572609, error = -0.008644, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm 17-03-18 03:49:27.854 -07 000000606 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm) 17-03-18 03:49:27.864 -07 000000606 INF: Y Motor: Moved to 61.5640 after 1457 ms (table move) 17-03-18 03:49:27.864 -07 000000626 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138924 mm (DAC = 30348) 17-03-18 03:49:27.864 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:49:27.864 -07 000000455 INF: FPGA: Recv ZSGSRD 30926 17-03-18 03:49:27.874 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall 17-03-18 03:49:27.874 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:49:27.874 -07 000000444 INF: FPGA: Recv ZSGSRD 30917 17-03-18 03:49:27.884 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:27.884 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:49:27.884 -07 000000382 INF: FPGA: Recv ZSGSRD 30916 17-03-18 03:49:27.894 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:27.894 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:49:27.894 -07 000000444 INF: FPGA: Recv ZSGSRD 30915 17-03-18 03:49:27.904 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:27.904 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:49:27.904 -07 000000382 INF: FPGA: Recv ZSGSRD 30908 17-03-18 03:49:27.914 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:27.914 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:49:27.914 -07 000000561 INF: FPGA: Recv ZSGSRD 30910 17-03-18 03:49:27.924 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:27.924 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:49:27.924 -07 000000438 INF: FPGA: Recv ZSGSRD 30907 17-03-18 03:49:27.934 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:27.934 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:49:27.934 -07 000000382 INF: FPGA: Recv ZSGSRD 30921 17-03-18 03:49:27.944 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:27.944 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:49:27.944 -07 000000438 INF: FPGA: Recv ZSGSRD 30920 17-03-18 03:49:27.954 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:27.954 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:49:27.954 -07 000000561 INF: FPGA: Recv ZSGSRD 30922 17-03-18 03:49:27.964 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:27.964 -07 000000626 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-18 03:49:27.964 -07 000000606 INF: FPGA: Recv ZPIEZORD 26706 17-03-18 03:49:27.974 -07 000000626 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:27.974 -07 000000626 INF: Z Motor: Piezo is near 37.1 V (nominally 0 to 100 V), expect near 46.3 V, since DAC is at 4.631 V. Piezo Error = -9.3 V. 17-03-18 03:49:27.974 -07 000000626 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.9 um, Read 10 ADC samples: Avg = 30916 (-138.1 uncal um), Error = 0.8 uncal um, Median = 30916 (-138.1 uncal um), StdDev = 6 (0.0 uncal um), Range = 19 (0.1 uncal um), Min = 30907 (-138.1 uncal um), Max = 30926 (-138.2 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 9 (0.1 uncal um) 17-03-18 03:49:27.974 -07 000000626 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30916, posNoise = 10, negNoise = 9 17-03-18 03:49:27.974 -07 000000626 INF: Z Motor: After move to -0.138924, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-18 03:49:27.974 -07 000000626 INF: Z Motor: Settle wait time = 1461 ms, measure time = 106 ms (allowed 150 ms), total time = 1567 ms 17-03-18 03:49:27.974 -07 000000626 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms 17-03-18 03:49:28.024 -07 000000626 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1620 ms 17-03-18 03:49:28.024 -07 000000626 INF: Y Motor: Restored settling times back to 3000 or 1100 ms 17-03-18 03:49:28.024 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-18 03:49:28.024 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-18 03:49:28.024 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-18 03:49:28.024 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-18 03:49:28.024 -07 000000444 INF: Disarm and arm camera sensor 0: ROITrigger start. 17-03-18 03:49:28.024 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-18 03:49:28.024 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-18 03:49:28.024 -07 000000444 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start. 17-03-18 03:49:28.034 -07 000000444 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms. 17-03-18 03:49:28.034 -07 000000444 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start. 17-03-18 03:49:28.044 -07 000000444 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms. 17-03-18 03:49:28.044 -07 000000444 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 14 ms. 17-03-18 03:49:28.044 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera] 17-03-18 03:49:28.094 -07 000000480 INF: FPGA: Recv @CAMSNAP turning led on 40 17-03-18 03:49:28.384 -07 000000626 INF: FPGA: Recv @CAMSNAP img rdy 340 17-03-18 03:49:28.384 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340 17-03-18 03:49:28.394 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start. 17-03-18 03:49:28.394 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 596199184, 0x0, 559484976) start. 17-03-18 03:49:28.424 -07 000000461 INF: FPGA: Recv @CAMSNAP 380 17-03-18 03:49:28.424 -07 000000626 INF: FPGA: Recv CAMSNAP 17-03-18 03:49:28.424 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 379 ms to get response, and 384 ms overall 17-03-18 03:49:28.504 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 596199184, 0x0, 559484976) end. Duration was 113 ms. 17-03-18 03:49:28.504 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-18 03:49:28.504 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms. 17-03-18 03:49:28.504 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 116 ms. 17-03-18 03:49:28.534 -07 000000626 INF: Autofocus start 17-03-18 03:49:28.534 -07 000000626 INF: MeasureProfile start 17-03-18 03:49:28.534 -07 000000455 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-18 03:49:28.544 -07 000000480 INF: FPGA: Recv FOCMRRCUR 17-03-18 03:49:28.544 -07 000000455 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 3 ms to get response, and 6 ms overall 17-03-18 03:49:28.544 -07 000000455 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror] 17-03-18 03:49:28.554 -07 000000626 INF: MeasureProfile done 17-03-18 03:49:28.554 -07 000000626 INF: X=16 Z correction [um]=0.0530179 17-03-18 03:49:28.554 -07 000000626 INF: Autofocus finished 17-03-18 03:49:28.744 -07 000000438 INF: FPGA: Recv FOCMRRIMG 17-03-18 03:49:28.744 -07 000000455 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 197 ms to get response, and 202 ms overall 17-03-18 03:49:28.754 -07 000000610 INF: ------------ Scan Snapping tile 3 at Y-position 61.56396484375, Z-position -0.138934294585817. ---------- 17-03-18 03:49:28.754 -07 000000610 INF: Cycle 117 Tile 3 Exposure Settings A 411 G 198 T 198 C 411 17-03-18 03:49:28.754 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28872, sync = True, waitForSettling = True) 17-03-18 03:49:28.754 -07 000000610 INF: Z Motor: Moving to -0.132168 mm, started at -0.138934 mm, distance = 6.77 um 17-03-18 03:49:28.754 -07 000000610 INF: FPGA: Xmit ZDACW 28872\n [Z Motor] 17-03-18 03:49:28.754 -07 000000455 INF: FPGA: Recv ZDACW 17-03-18 03:49:28.764 -07 000000610 INF: FPGA: 'ZDACW 28872' command took 0 ms to send, 0 ms to get response, and 5 ms overall 17-03-18 03:49:28.764 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-18 03:49:28.764 -07 000000561 INF: FPGA: Recv ZDACR 28872 17-03-18 03:49:28.774 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:28.774 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-18 03:49:28.924 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:49:28.924 -07 000000561 INF: FPGA: Recv ZSGSRD 29859 17-03-18 03:49:28.934 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-18 03:49:28.934 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:49:28.934 -07 000000626 INF: FPGA: Recv ZSGSRD 29865 17-03-18 03:49:28.944 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:28.944 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:49:28.944 -07 000000561 INF: FPGA: Recv ZSGSRD 29865 17-03-18 03:49:28.954 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:28.954 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:49:28.954 -07 000000626 INF: FPGA: Recv ZSGSRD 29865 17-03-18 03:49:28.964 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:28.964 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:49:28.964 -07 000000606 INF: FPGA: Recv ZSGSRD 29863 17-03-18 03:49:28.974 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:28.974 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:49:28.974 -07 000000467 INF: FPGA: Recv ZSGSRD 29859 17-03-18 03:49:28.984 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:28.984 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:49:28.984 -07 000000606 INF: FPGA: Recv ZSGSRD 29867 17-03-18 03:49:28.994 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:28.994 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:49:28.994 -07 000000626 INF: FPGA: Recv ZSGSRD 29872 17-03-18 03:49:29.004 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:29.004 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:49:29.004 -07 000000606 INF: FPGA: Recv ZSGSRD 29862 17-03-18 03:49:29.014 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:29.014 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:49:29.014 -07 000000561 INF: FPGA: Recv ZSGSRD 29859 17-03-18 03:49:29.024 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:29.024 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-18 03:49:29.024 -07 000000606 INF: FPGA: Recv ZPIEZORD 25294 17-03-18 03:49:29.034 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:29.034 -07 000000610 INF: Z Motor: Piezo is near 34.0 V (nominally 0 to 100 V), expect near 44.1 V, since DAC is at 4.406 V. Piezo Error = -10.0 V. 17-03-18 03:49:29.034 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.2 um, Read 10 ADC samples: Avg = 29864 (-131.4 uncal um), Error = 0.8 uncal um, Median = 29864 (-131.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 29859 (-131.4 uncal um), Max = 29872 (-131.4 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um) 17-03-18 03:49:29.034 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29864, posNoise = 8, negNoise = 5 17-03-18 03:49:29.034 -07 000000610 INF: Z Motor: After move to -0.132168, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-18 03:49:29.034 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms) 17-03-18 03:49:29.034 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-18 03:49:29.034 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-18 03:49:29.034 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-18 03:49:29.034 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start. 17-03-18 03:49:29.034 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-18 03:49:29.034 -07 000000467 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-18 03:49:29.034 -07 000000438 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start. 17-03-18 03:49:29.034 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074704) start. 17-03-18 03:49:29.034 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-18 03:49:29.034 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start. 17-03-18 03:49:29.034 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms. 17-03-18 03:49:29.034 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start. 17-03-18 03:49:29.044 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms. 17-03-18 03:49:29.044 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start. 17-03-18 03:49:29.044 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms. 17-03-18 03:49:29.044 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start. 17-03-18 03:49:29.054 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms. 17-03-18 03:49:29.054 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms. 17-03-18 03:49:29.054 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms. 17-03-18 03:49:29.054 -07 000000438 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms. 17-03-18 03:49:29.054 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 411 411 198 198 29049 150\n [Camera] 17-03-18 03:49:29.254 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning red on 192 17-03-18 03:49:29.664 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 603 17-03-18 03:49:29.664 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 603 17-03-18 03:49:29.664 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-18 03:49:29.664 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 603 17-03-18 03:49:29.664 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 603 17-03-18 03:49:29.664 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-18 03:49:29.674 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-18 03:49:29.674 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 2165554656, 0x0, 391868352) start. 17-03-18 03:49:29.674 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-18 03:49:29.674 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 2200976920, 0x0, 418435064) start. 17-03-18 03:49:29.854 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29049 796 17-03-18 03:49:30.004 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP turning grn on 946 17-03-18 03:49:30.044 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 2165554656, 0x0, 391868352) end. Duration was 373 ms. 17-03-18 03:49:30.044 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 374 ms. 17-03-18 03:49:30.044 -07 000000561 INF: Camera: CopyActivePixFullImage start. 17-03-18 03:49:30.044 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 2200976920, 0x0, 418435064) end. Duration was 372 ms. 17-03-18 03:49:30.044 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 372 ms. 17-03-18 03:49:30.044 -07 000000467 INF: Camera: CopyActivePixFullImage start. 17-03-18 03:49:30.044 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-18 03:49:30.044 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms. 17-03-18 03:49:30.054 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms. 17-03-18 03:49:30.064 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms. 17-03-18 03:49:30.204 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1144 17-03-18 03:49:30.204 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1144 17-03-18 03:49:30.204 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-18 03:49:30.204 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1144 17-03-18 03:49:30.204 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1144 17-03-18 03:49:30.204 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-18 03:49:30.204 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) start. 17-03-18 03:49:30.204 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-18 03:49:30.204 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-18 03:49:30.204 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start. 17-03-18 03:49:30.394 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP 1336 17-03-18 03:49:30.394 -07 000000382 INF: FPGA: Recv CAMDBLSNAP 17-03-18 03:49:30.394 -07 000000610 INF: FPGA: 'CAMDBLSNAP 411 411 198 198 29049 150' command took 2 ms to send, 1337 ms to get response, and 1343 ms overall 17-03-18 03:49:30.394 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503 17-03-18 03:49:30.394 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 4 at Y-position 61.56396484375, Z-Position -0.132176023412684. ------ 17-03-18 03:49:30.404 -07 000000438 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-18 03:49:30.404 -07 000000444 INF: Y Motor: MoveYZ optimized starting. Moving Y to 62.4026 mm, moving Z to -0.13862 mm 17-03-18 03:49:30.404 -07 000000444 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move 17-03-18 03:49:30.404 -07 000000501 INF: FPGA: Recv FOCMRRCUR 17-03-18 03:49:30.404 -07 000000606 INF: Z Motor: Entering MoveAbsStepped (DAC = 30282, sync = True, waitForSettling = False) 17-03-18 03:49:30.404 -07 000000606 INF: Z Motor: Moving to -0.138622 mm, started at -0.132176 mm, distance = -6.45 um 17-03-18 03:49:30.404 -07 000000382 INF: Y Motor: Entering MoveAbsStepped (target = 99844 steps, sync = True, waitForSettling = True) 17-03-18 03:49:30.404 -07 000000382 INF: Y Motor: Moving to 62.4026 mm, started at 61.5640 mm, delta = 0.8386 mm 17-03-18 03:49:30.414 -07 000000438 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall 17-03-18 03:49:30.414 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 03:49:30.414 -07 000000561 INF: FPGA: Recv YRDPOS 126083 17-03-18 03:49:30.424 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-18 03:49:30.424 -07 000000606 INF: FPGA: Xmit ZDACW 30282\n [Z Motor] 17-03-18 03:49:30.424 -07 000000382 INF: Y Motor: Encoder = 126083 = motor step 98502.3 = 61.5640 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 03:49:30.424 -07 000000382 INF: Y Motor: Last commanded position = 61.5726 mm (98516.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True 17-03-18 03:49:30.424 -07 000000382 INF: Y Motor: Moving 1342 steps-18 17-03-18 03:49:30.424 -07 000000561 INF: FPGA: Recv ZDACW 17-03-18 03:49:30.434 -07 000000606 INF: FPGA: 'ZDACW 30282' command took 0 ms to send, 0 ms to get response, and 20 ms overall 17-03-18 03:49:30.434 -07 000000438 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror] 17-03-18 03:49:30.444 -07 000000382 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor] 17-03-18 03:49:30.454 -07 000000606 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-18 03:49:30.454 -07 000000626 INF: FPGA: Recv ZDACR 30282 17-03-18 03:49:30.464 -07 000000606 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 30 ms overall 17-03-18 03:49:30.464 -07 000000606 INF: Z Motor: MoveAbsStepped took 50 ms (did NOT wait for settling yet)) 17-03-18 03:49:30.614 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) end. Duration was 401 ms. 17-03-18 03:49:30.614 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms. 17-03-18 03:49:30.614 -07 000000467 INF: Camera: CopyActivePixFullImage start. 17-03-18 03:49:30.614 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 401 ms. 17-03-18 03:49:30.614 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms. 17-03-18 03:49:30.614 -07 000000455 INF: Camera: CopyActivePixFullImage start. 17-03-18 03:49:30.614 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-18 03:49:30.614 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms. 17-03-18 03:49:30.614 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-18 03:49:30.624 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms. 17-03-18 03:49:30.634 -07 000000480 INF: FPGA: Recv FOCMRRFOC 17-03-18 03:49:30.634 -07 000000438 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 222 ms overall 17-03-18 03:49:30.814 -07 000000501 INF: FPGA: Recv YMVTILE 17-03-18 03:49:30.814 -07 000000382 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall 17-03-18 03:49:30.864 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 03:49:30.864 -07 000000579 INF: FPGA: Recv YRDPOS 127786 17-03-18 03:49:30.874 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall 17-03-18 03:49:30.874 -07 000000382 INF: Y Motor: Encoder = 127786 = motor step 99832.8 = 62.3955 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 03:49:30.874 -07 000000382 INF: Y Motor: Position error before settling (table move) = -15 encoder counts (-0.007 mm) 17-03-18 03:49:30.874 -07 000000382 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.839 mm, average velocity = 2.112 mm/sec 17-03-18 03:49:31.614 -07 000000438 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-18 03:49:31.614 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 116. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1683, R2=1752, Total=3435. Warn if over 250 bubbles per interval. 17-03-18 03:49:31.824 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 03:49:31.824 -07 000000480 INF: FPGA: Recv YRDPOS 127786 17-03-18 03:49:31.834 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-18 03:49:31.834 -07 000000382 INF: Y Motor: Encoder = 127786 = motor step 99832.8 = 62.3955 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 03:49:31.854 -07 000000382 INF: Y Motor: After move to 62.402607, error = -0.007099, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm 17-03-18 03:49:31.854 -07 000000382 INF: Y Motor: Position error after settling (table move) = -15 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm) 17-03-18 03:49:31.854 -07 000000382 INF: Y Motor: Moved to 62.3955 after 1448 ms (table move) 17-03-18 03:49:31.864 -07 000000444 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138622 mm (DAC = 30282) 17-03-18 03:49:31.864 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:49:31.864 -07 000000382 INF: FPGA: Recv ZSGSRD 30870 17-03-18 03:49:31.874 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall 17-03-18 03:49:31.874 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:49:31.874 -07 000000382 INF: FPGA: Recv ZSGSRD 30871 17-03-18 03:49:31.884 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:31.884 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:49:31.884 -07 000000382 INF: FPGA: Recv ZSGSRD 30868 17-03-18 03:49:31.894 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:31.894 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:49:31.894 -07 000000382 INF: FPGA: Recv ZSGSRD 30872 17-03-18 03:49:31.904 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:31.904 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:49:31.904 -07 000000501 INF: FPGA: Recv ZSGSRD 30872 17-03-18 03:49:31.914 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:31.914 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:49:31.914 -07 000000382 INF: FPGA: Recv ZSGSRD 30871 17-03-18 03:49:31.924 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall 17-03-18 03:49:31.924 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:49:31.924 -07 000000626 INF: FPGA: Recv ZSGSRD 30866 17-03-18 03:49:31.934 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:31.934 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:49:31.934 -07 000000501 INF: FPGA: Recv ZSGSRD 30866 17-03-18 03:49:31.944 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:31.944 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:49:31.944 -07 000000606 INF: FPGA: Recv ZSGSRD 30869 17-03-18 03:49:31.954 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:31.954 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:49:31.954 -07 000000382 INF: FPGA: Recv ZSGSRD 30873 17-03-18 03:49:31.964 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:31.964 -07 000000444 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-18 03:49:31.964 -07 000000579 INF: FPGA: Recv ZPIEZORD 26610 17-03-18 03:49:31.974 -07 000000444 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:31.974 -07 000000444 INF: Z Motor: Piezo is near 36.8 V (nominally 0 to 100 V), expect near 46.2 V, since DAC is at 4.621 V. Piezo Error = -9.4 V. 17-03-18 03:49:31.974 -07 000000444 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.6 um, Read 10 ADC samples: Avg = 30870 (-137.8 uncal um), Error = 0.8 uncal um, Median = 30870 (-137.8 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 30866 (-137.8 uncal um), Max = 30873 (-137.9 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um) 17-03-18 03:49:31.974 -07 000000444 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30870, posNoise = 3, negNoise = 4 17-03-18 03:49:31.974 -07 000000444 INF: Z Motor: After move to -0.138622, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-18 03:49:31.974 -07 000000444 INF: Z Motor: Settle wait time = 1452 ms, measure time = 109 ms (allowed 150 ms), total time = 1561 ms 17-03-18 03:49:31.974 -07 000000444 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms 17-03-18 03:49:32.024 -07 000000444 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1615 ms 17-03-18 03:49:32.024 -07 000000444 INF: Y Motor: Restored settling times back to 3000 or 1100 ms 17-03-18 03:49:32.024 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-18 03:49:32.024 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-18 03:49:32.024 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-18 03:49:32.024 -07 000000461 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-18 03:49:32.024 -07 000000561 INF: Disarm and arm camera sensor 0: ROITrigger start. 17-03-18 03:49:32.024 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-18 03:49:32.024 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-18 03:49:32.024 -07 000000561 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start. 17-03-18 03:49:32.034 -07 000000561 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms. 17-03-18 03:49:32.034 -07 000000561 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start. 17-03-18 03:49:32.044 -07 000000561 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms. 17-03-18 03:49:32.044 -07 000000561 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms. 17-03-18 03:49:32.044 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera] 17-03-18 03:49:32.094 -07 000000480 INF: FPGA: Recv @CAMSNAP turning led on 40 17-03-18 03:49:32.384 -07 000000480 INF: FPGA: Recv @CAMSNAP img rdy 340 17-03-18 03:49:32.384 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340 17-03-18 03:49:32.394 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start. 17-03-18 03:49:32.394 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 648609776, 0x0, 559484976) start. 17-03-18 03:49:32.424 -07 000000382 INF: FPGA: Recv @CAMSNAP 380 17-03-18 03:49:32.434 -07 000000480 INF: FPGA: Recv CAMSNAP 17-03-18 03:49:32.434 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 379 ms to get response, and 384 ms overall 17-03-18 03:49:32.514 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 648609776, 0x0, 559484976) end. Duration was 126 ms. 17-03-18 03:49:32.514 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-18 03:49:32.514 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms. 17-03-18 03:49:32.514 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms. 17-03-18 03:49:32.534 -07 000000561 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-18 03:49:32.534 -07 000000467 INF: Autofocus start 17-03-18 03:49:32.534 -07 000000467 INF: MeasureProfile start 17-03-18 03:49:32.534 -07 000000461 INF: FPGA: Recv FOCMRRCUR 17-03-18 03:49:32.544 -07 000000561 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall 17-03-18 03:49:32.544 -07 000000561 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror] 17-03-18 03:49:32.544 -07 000000467 INF: MeasureProfile done 17-03-18 03:49:32.544 -07 000000467 INF: X=-32 Z correction [um]=-0.1591732 17-03-18 03:49:32.544 -07 000000467 INF: Autofocus finished 17-03-18 03:49:32.574 -07 000000480 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 117, FrontChillerTemperature: 4.043918, 17-03-18 03:49:32.744 -07 000000467 INF: FPGA: Recv FOCMRRIMG 17-03-18 03:49:32.744 -07 000000561 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall 17-03-18 03:49:32.744 -07 000000610 INF: ------------ Scan Snapping tile 4 at Y-position 62.3955078125, Z-position -0.138638780827296. ---------- 17-03-18 03:49:32.744 -07 000000610 INF: Cycle 117 Tile 4 Exposure Settings A 411 G 198 T 198 C 411 17-03-18 03:49:32.754 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28760, sync = True, waitForSettling = True) 17-03-18 03:49:32.754 -07 000000610 INF: Z Motor: Moving to -0.131655 mm, started at -0.138639 mm, distance = 6.98 um 17-03-18 03:49:32.754 -07 000000610 INF: FPGA: Xmit ZDACW 28760\n [Z Motor] 17-03-18 03:49:32.754 -07 000000579 INF: FPGA: Recv ZDACW 17-03-18 03:49:32.764 -07 000000610 INF: FPGA: 'ZDACW 28760' command took 0 ms to send, 0 ms to get response, and 8 ms overall 17-03-18 03:49:32.764 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-18 03:49:32.764 -07 000000461 INF: FPGA: Recv ZDACR 28760 17-03-18 03:49:32.774 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:32.774 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-18 03:49:32.924 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:49:32.924 -07 000000626 INF: FPGA: Recv ZSGSRD 29780 17-03-18 03:49:32.934 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:32.934 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:49:32.934 -07 000000626 INF: FPGA: Recv ZSGSRD 29785 17-03-18 03:49:32.944 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:32.944 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:49:32.944 -07 000000579 INF: FPGA: Recv ZSGSRD 29782 17-03-18 03:49:32.954 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:32.954 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:49:32.954 -07 000000480 INF: FPGA: Recv ZSGSRD 29783 17-03-18 03:49:32.964 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:32.964 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:49:32.964 -07 000000606 INF: FPGA: Recv ZSGSRD 29778 17-03-18 03:49:32.974 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:32.974 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:49:32.974 -07 000000480 INF: FPGA: Recv ZSGSRD 29785 17-03-18 03:49:32.984 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:32.984 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:49:32.984 -07 000000626 INF: FPGA: Recv ZSGSRD 29787 17-03-18 03:49:32.994 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:32.994 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:49:32.994 -07 000000480 INF: FPGA: Recv ZSGSRD 29780 17-03-18 03:49:33.004 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:33.004 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:49:33.004 -07 000000626 INF: FPGA: Recv ZSGSRD 29786 17-03-18 03:49:33.014 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:33.014 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:49:33.014 -07 000000480 INF: FPGA: Recv ZSGSRD 29781 17-03-18 03:49:33.024 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:33.024 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-18 03:49:33.024 -07 000000467 INF: FPGA: Recv ZPIEZORD 25192 17-03-18 03:49:33.034 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:33.034 -07 000000610 INF: Z Motor: Piezo is near 33.8 V (nominally 0 to 100 V), expect near 43.9 V, since DAC is at 4.388 V. Piezo Error = -10.1 V. 17-03-18 03:49:33.034 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.7 um, Read 10 ADC samples: Avg = 29783 (-130.9 uncal um), Error = 0.8 uncal um, Median = 29782 (-130.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29778 (-130.8 uncal um), Max = 29787 (-130.9 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um) 17-03-18 03:49:33.034 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29783, posNoise = 4, negNoise = 5 17-03-18 03:49:33.034 -07 000000610 INF: Z Motor: After move to -0.131655, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-18 03:49:33.034 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms) 17-03-18 03:49:33.034 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-18 03:49:33.034 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-18 03:49:33.034 -07 000000444 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-18 03:49:33.034 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-18 03:49:33.034 -07 000000461 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start. 17-03-18 03:49:33.034 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start. 17-03-18 03:49:33.034 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) start. 17-03-18 03:49:33.034 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-18 03:49:33.034 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms. 17-03-18 03:49:33.034 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start. 17-03-18 03:49:33.034 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 4 ms. 17-03-18 03:49:33.034 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start. 17-03-18 03:49:33.044 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms. 17-03-18 03:49:33.044 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start. 17-03-18 03:49:33.044 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms. 17-03-18 03:49:33.044 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start. 17-03-18 03:49:33.054 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms. 17-03-18 03:49:33.054 -07 000000461 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms. 17-03-18 03:49:33.054 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms. 17-03-18 03:49:33.054 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms. 17-03-18 03:49:33.054 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 411 411 198 198 28937 150\n [Camera] 17-03-18 03:49:33.254 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning red on 192 17-03-18 03:49:33.664 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 603 17-03-18 03:49:33.664 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 603 17-03-18 03:49:33.664 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-18 03:49:33.664 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-18 03:49:33.664 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) start. 17-03-18 03:49:33.664 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 603 17-03-18 03:49:33.664 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 603 17-03-18 03:49:33.664 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-18 03:49:33.664 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-18 03:49:33.664 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) start. 17-03-18 03:49:33.854 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28937 796 17-03-18 03:49:34.004 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning grn on 946 17-03-18 03:49:34.044 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) end. Duration was 377 ms. 17-03-18 03:49:34.044 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms. 17-03-18 03:49:34.044 -07 000000467 INF: Camera: CopyActivePixFullImage start. 17-03-18 03:49:34.044 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-18 03:49:34.054 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) end. Duration was 387 ms. 17-03-18 03:49:34.054 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 387 ms. 17-03-18 03:49:34.054 -07 000000626 INF: Camera: CopyActivePixFullImage start. 17-03-18 03:49:34.054 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms. 17-03-18 03:49:34.054 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-18 03:49:34.054 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 391 ms. 17-03-18 03:49:34.204 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1144 17-03-18 03:49:34.204 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1144 17-03-18 03:49:34.204 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-18 03:49:34.204 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-18 03:49:34.204 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start. 17-03-18 03:49:34.204 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1144 17-03-18 03:49:34.204 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1144 17-03-18 03:49:34.204 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-18 03:49:34.204 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-18 03:49:34.204 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start. 17-03-18 03:49:34.394 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP 1337 17-03-18 03:49:34.394 -07 000000579 INF: FPGA: Recv CAMDBLSNAP 17-03-18 03:49:34.394 -07 000000610 INF: FPGA: 'CAMDBLSNAP 411 411 198 198 28937 150' command took 2 ms to send, 1336 ms to get response, and 1343 ms overall 17-03-18 03:49:34.394 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503 17-03-18 03:49:34.394 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 5 at Y-position 62.3955078125, Z-Position -0.131655662229202. ------ 17-03-18 03:49:34.404 -07 000000606 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-18 03:49:34.404 -07 000000480 INF: Y Motor: MoveYZ optimized starting. Moving Y to 63.2326 mm, moving Z to -0.13836 mm 17-03-18 03:49:34.404 -07 000000480 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move 17-03-18 03:49:34.404 -07 000000444 INF: FPGA: Recv FOCMRRCUR 17-03-18 03:49:34.404 -07 000000467 INF: Y Motor: Entering MoveAbsStepped (target = 101172 steps, sync = True, waitForSettling = True) 17-03-18 03:49:34.404 -07 000000467 INF: Y Motor: Moving to 63.2326 mm, started at 62.3955 mm, delta = 0.8371 mm 17-03-18 03:49:34.404 -07 000000501 INF: Z Motor: Entering MoveAbsStepped (DAC = 30224, sync = True, waitForSettling = False) 17-03-18 03:49:34.404 -07 000000501 INF: Z Motor: Moving to -0.138357 mm, started at -0.131656 mm, distance = -6.70 um 17-03-18 03:49:34.414 -07 000000606 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 8 ms overall 17-03-18 03:49:34.414 -07 000000501 INF: FPGA: Xmit ZDACW 30224\n [Z Motor] 17-03-18 03:49:34.414 -07 000000579 INF: FPGA: Recv ZDACW 17-03-18 03:49:34.424 -07 000000467 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 03:49:34.424 -07 000000501 INF: FPGA: 'ZDACW 30224' command took 0 ms to send, 0 ms to get response, and 14 ms overall 17-03-18 03:49:34.424 -07 000000626 INF: FPGA: Recv YRDPOS 127787 17-03-18 03:49:34.434 -07 000000606 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror] 17-03-18 03:49:34.434 -07 000000467 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 24 ms overall 17-03-18 03:49:34.434 -07 000000467 INF: Y Motor: Encoder = 127787 = motor step 99833.6 = 62.3960 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 03:49:34.434 -07 000000467 INF: Y Motor: Last commanded position = 62.4026 mm (99844.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True 17-03-18 03:49:34.434 -07 000000467 INF: Y Motor: Moving 1339 steps-15 17-03-18 03:49:34.444 -07 000000501 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-18 03:49:34.444 -07 000000579 INF: FPGA: Recv ZDACR 30224 17-03-18 03:49:34.454 -07 000000501 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 27 ms overall 17-03-18 03:49:34.454 -07 000000501 INF: Z Motor: MoveAbsStepped took 44 ms (did NOT wait for settling yet)) 17-03-18 03:49:34.454 -07 000000467 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor] 17-03-18 03:49:34.594 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 388 ms. 17-03-18 03:49:34.594 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 388 ms. 17-03-18 03:49:34.594 -07 000000561 INF: Camera: CopyActivePixFullImage start. 17-03-18 03:49:34.594 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 385 ms. 17-03-18 03:49:34.594 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 386 ms. 17-03-18 03:49:34.594 -07 000000382 INF: Camera: CopyActivePixFullImage start. 17-03-18 03:49:34.594 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-18 03:49:34.604 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms. 17-03-18 03:49:34.604 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 396 ms. 17-03-18 03:49:34.604 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 397 ms. 17-03-18 03:49:34.634 -07 000000626 INF: FPGA: Recv FOCMRRFOC 17-03-18 03:49:34.634 -07 000000606 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 222 ms overall 17-03-18 03:49:34.824 -07 000000561 INF: FPGA: Recv YMVTILE 17-03-18 03:49:34.824 -07 000000467 INF: FPGA: 'YMVTILE 1327' command took 1 ms to send, 369 ms to get response, and 394 ms overall 17-03-18 03:49:34.884 -07 000000467 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 03:49:34.894 -07 000000455 INF: FPGA: Recv YRDPOS 129483 17-03-18 03:49:34.894 -07 000000467 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 2 ms overall 17-03-18 03:49:34.894 -07 000000467 INF: Y Motor: Encoder = 129483 = motor step 101158.6 = 63.2241 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 03:49:34.894 -07 000000467 INF: Y Motor: Position error before settling (table move) = -17 encoder counts (-0.008 mm) 17-03-18 03:49:34.894 -07 000000467 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.837 mm, average velocity = 2.125 mm/sec 17-03-18 03:49:35.844 -07 000000467 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 03:49:35.844 -07 000000501 INF: FPGA: Recv YRDPOS 129483 17-03-18 03:49:35.854 -07 000000467 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-18 03:49:35.854 -07 000000467 INF: Y Motor: Encoder = 129483 = motor step 101158.6 = 63.2241 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 03:49:35.884 -07 000000467 INF: Y Motor: After move to 63.232609, error = -0.008488, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm 17-03-18 03:49:35.884 -07 000000467 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm) 17-03-18 03:49:35.884 -07 000000467 INF: Y Motor: Moved to 63.2241 after 1475 ms (table move) 17-03-18 03:49:35.884 -07 000000480 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138357 mm (DAC = 30224) 17-03-18 03:49:35.884 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:49:35.884 -07 000000461 INF: FPGA: Recv ZSGSRD 30831 17-03-18 03:49:35.894 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall 17-03-18 03:49:35.894 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:49:35.894 -07 000000579 INF: FPGA: Recv ZSGSRD 30830 17-03-18 03:49:35.904 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:35.904 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:49:35.904 -07 000000461 INF: FPGA: Recv ZSGSRD 30831 17-03-18 03:49:35.914 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:35.914 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:49:35.914 -07 000000474 INF: FPGA: Recv ZSGSRD 30829 17-03-18 03:49:35.924 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:35.924 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:49:35.924 -07 000000461 INF: FPGA: Recv ZSGSRD 30821 17-03-18 03:49:35.934 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:35.934 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:49:35.934 -07 000000474 INF: FPGA: Recv ZSGSRD 30826 17-03-18 03:49:35.944 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:35.944 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:49:35.944 -07 000000438 INF: FPGA: Recv ZSGSRD 30827 17-03-18 03:49:35.954 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:35.954 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:49:35.954 -07 000000569 INF: FPGA: Recv ZSGSRD 30824 17-03-18 03:49:35.964 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:35.964 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:49:35.964 -07 000000579 INF: FPGA: Recv ZSGSRD 30822 17-03-18 03:49:35.974 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall 17-03-18 03:49:35.974 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:49:35.974 -07 000000561 INF: FPGA: Recv ZSGSRD 30830 17-03-18 03:49:35.984 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:35.984 -07 000000480 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-18 03:49:35.984 -07 000000467 INF: FPGA: Recv ZPIEZORD 26554 17-03-18 03:49:35.994 -07 000000480 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:35.994 -07 000000480 INF: Z Motor: Piezo is near 36.7 V (nominally 0 to 100 V), expect near 46.1 V, since DAC is at 4.612 V. Piezo Error = -9.4 V. 17-03-18 03:49:35.994 -07 000000480 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.4 um, Read 10 ADC samples: Avg = 30827 (-137.6 uncal um), Error = 0.8 uncal um, Median = 30828 (-137.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 30821 (-137.5 uncal um), Max = 30831 (-137.6 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um) 17-03-18 03:49:35.994 -07 000000480 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30827, posNoise = 4, negNoise = 6 17-03-18 03:49:35.994 -07 000000480 INF: Z Motor: After move to -0.138357, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-18 03:49:35.994 -07 000000480 INF: Z Motor: Settle wait time = 1478 ms, measure time = 107 ms (allowed 150 ms), total time = 1585 ms 17-03-18 03:49:35.994 -07 000000480 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms 17-03-18 03:49:36.044 -07 000000480 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1637 ms 17-03-18 03:49:36.044 -07 000000480 INF: Y Motor: Restored settling times back to 3000 or 1100 ms 17-03-18 03:49:36.044 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-18 03:49:36.044 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-18 03:49:36.044 -07 000000606 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-18 03:49:36.044 -07 000000444 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-18 03:49:36.044 -07 000000455 INF: Disarm and arm camera sensor 0: ROITrigger start. 17-03-18 03:49:36.044 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-18 03:49:36.044 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms. 17-03-18 03:49:36.044 -07 000000455 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start. 17-03-18 03:49:36.054 -07 000000455 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 5 ms. 17-03-18 03:49:36.054 -07 000000455 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start. 17-03-18 03:49:36.064 -07 000000455 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms. 17-03-18 03:49:36.064 -07 000000455 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 20 ms. 17-03-18 03:49:36.064 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera] 17-03-18 03:49:36.114 -07 000000480 INF: FPGA: Recv @CAMSNAP turning led on 40 17-03-18 03:49:36.414 -07 000000501 INF: FPGA: Recv @CAMSNAP img rdy 340 17-03-18 03:49:36.414 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340 17-03-18 03:49:36.414 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start. 17-03-18 03:49:36.414 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 677954600, 0x0, 559484976) start. 17-03-18 03:49:36.454 -07 000000444 INF: FPGA: Recv @CAMSNAP 380 17-03-18 03:49:36.454 -07 000000382 INF: FPGA: Recv CAMSNAP 17-03-18 03:49:36.454 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 383 ms to get response, and 384 ms overall 17-03-18 03:49:36.534 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 677954600, 0x0, 559484976) end. Duration was 117 ms. 17-03-18 03:49:36.534 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-18 03:49:36.534 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms. 17-03-18 03:49:36.534 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms. 17-03-18 03:49:36.554 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-18 03:49:36.554 -07 000000461 INF: Autofocus start 17-03-18 03:49:36.554 -07 000000461 INF: MeasureProfile start 17-03-18 03:49:36.554 -07 000000467 INF: FPGA: Recv FOCMRRCUR 17-03-18 03:49:36.564 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall 17-03-18 03:49:36.564 -07 000000501 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror] 17-03-18 03:49:36.564 -07 000000461 INF: MeasureProfile done 17-03-18 03:49:36.564 -07 000000461 INF: X=32 Z correction [um]=0.1299841 17-03-18 03:49:36.564 -07 000000461 INF: Autofocus finished 17-03-18 03:49:36.614 -07 000000480 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-18 03:49:36.614 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 116. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1683, R2=1752, Total=3435. Warn if over 250 bubbles per interval. 17-03-18 03:49:36.764 -07 000000474 INF: FPGA: Recv FOCMRRIMG 17-03-18 03:49:36.764 -07 000000501 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall 17-03-18 03:49:36.764 -07 000000610 INF: ------------ Scan Snapping tile 5 at Y-position 63.22412109375, Z-position -0.1383625397052. ---------- 17-03-18 03:49:36.764 -07 000000610 INF: Cycle 117 Tile 5 Exposure Settings A 411 G 198 T 198 C 411 17-03-18 03:49:36.774 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28765, sync = True, waitForSettling = True) 17-03-18 03:49:36.774 -07 000000610 INF: Z Motor: Moving to -0.131678 mm, started at -0.138363 mm, distance = 6.68 um 17-03-18 03:49:36.774 -07 000000610 INF: FPGA: Xmit ZDACW 28765\n [Z Motor] 17-03-18 03:49:36.774 -07 000000438 INF: FPGA: Recv ZDACW 17-03-18 03:49:36.784 -07 000000610 INF: FPGA: 'ZDACW 28765' command took 0 ms to send, 0 ms to get response, and 8 ms overall 17-03-18 03:49:36.784 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-18 03:49:36.784 -07 000000561 INF: FPGA: Recv ZDACR 28765 17-03-18 03:49:36.794 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:36.794 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-18 03:49:36.944 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:49:36.944 -07 000000438 INF: FPGA: Recv ZSGSRD 29782 17-03-18 03:49:36.954 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-18 03:49:36.954 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:49:36.954 -07 000000626 INF: FPGA: Recv ZSGSRD 29791 17-03-18 03:49:36.964 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:36.964 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:49:36.964 -07 000000606 INF: FPGA: Recv ZSGSRD 29787 17-03-18 03:49:36.974 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:36.974 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:49:36.974 -07 000000444 INF: FPGA: Recv ZSGSRD 29786 17-03-18 03:49:36.984 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:36.984 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:49:36.984 -07 000000569 INF: FPGA: Recv ZSGSRD 29787 17-03-18 03:49:36.994 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:36.994 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:49:36.994 -07 000000561 INF: FPGA: Recv ZSGSRD 29791 17-03-18 03:49:37.004 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:37.004 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:49:37.004 -07 000000382 INF: FPGA: Recv ZSGSRD 29789 17-03-18 03:49:37.014 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:37.014 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:49:37.014 -07 000000579 INF: FPGA: Recv ZSGSRD 29785 17-03-18 03:49:37.024 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:37.024 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:49:37.024 -07 000000474 INF: FPGA: Recv ZSGSRD 29784 17-03-18 03:49:37.034 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:37.034 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:49:37.034 -07 000000561 INF: FPGA: Recv ZSGSRD 29790 17-03-18 03:49:37.044 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:37.044 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-18 03:49:37.044 -07 000000455 INF: FPGA: Recv ZPIEZORD 25232 17-03-18 03:49:37.054 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:37.054 -07 000000610 INF: Z Motor: Piezo is near 33.9 V (nominally 0 to 100 V), expect near 43.9 V, since DAC is at 4.389 V. Piezo Error = -10.0 V. 17-03-18 03:49:37.054 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.7 um, Read 10 ADC samples: Avg = 29787 (-130.9 uncal um), Error = 0.8 uncal um, Median = 29787 (-130.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29782 (-130.9 uncal um), Max = 29791 (-130.9 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um) 17-03-18 03:49:37.054 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29787, posNoise = 4, negNoise = 5 17-03-18 03:49:37.054 -07 000000610 INF: Z Motor: After move to -0.131678, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-18 03:49:37.054 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms) 17-03-18 03:49:37.054 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-18 03:49:37.054 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-18 03:49:37.054 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-18 03:49:37.054 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-18 03:49:37.054 -07 000000474 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start. 17-03-18 03:49:37.054 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-18 03:49:37.054 -07 000000461 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start. 17-03-18 03:49:37.054 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074704) start. 17-03-18 03:49:37.054 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-18 03:49:37.054 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start. 17-03-18 03:49:37.054 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms. 17-03-18 03:49:37.054 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start. 17-03-18 03:49:37.054 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms. 17-03-18 03:49:37.054 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start. 17-03-18 03:49:37.064 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 5 ms. 17-03-18 03:49:37.064 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start. 17-03-18 03:49:37.064 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms. 17-03-18 03:49:37.064 -07 000000474 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms. 17-03-18 03:49:37.074 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms. 17-03-18 03:49:37.074 -07 000000461 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms. 17-03-18 03:49:37.074 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 411 411 198 198 28942 150\n [Camera] 17-03-18 03:49:37.274 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP turning red on 192 17-03-18 03:49:37.684 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 605 17-03-18 03:49:37.684 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 605 17-03-18 03:49:37.684 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-18 03:49:37.684 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-18 03:49:37.684 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start. 17-03-18 03:49:37.694 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 605 17-03-18 03:49:37.694 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 605 17-03-18 03:49:37.694 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-18 03:49:37.694 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-18 03:49:37.694 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start. 17-03-18 03:49:37.874 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28942 796 17-03-18 03:49:37.934 -07 000000382 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 117, FrontChillerTemperature: 4.019446, 17-03-18 03:49:38.024 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP turning grn on 948 17-03-18 03:49:38.064 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 372 ms. 17-03-18 03:49:38.064 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 372 ms. 17-03-18 03:49:38.064 -07 000000501 INF: Camera: CopyActivePixFullImage start. 17-03-18 03:49:38.064 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-18 03:49:38.064 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 379 ms. 17-03-18 03:49:38.064 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms. 17-03-18 03:49:38.064 -07 000000461 INF: Camera: CopyActivePixFullImage start. 17-03-18 03:49:38.074 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-18 03:49:38.074 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms. 17-03-18 03:49:38.074 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 384 ms. 17-03-18 03:49:38.224 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1144 17-03-18 03:49:38.224 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1144 17-03-18 03:49:38.234 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-18 03:49:38.234 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-18 03:49:38.234 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) start. 17-03-18 03:49:38.234 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1144 17-03-18 03:49:38.234 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1144 17-03-18 03:49:38.234 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-18 03:49:38.234 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-18 03:49:38.234 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2486767776, 0x0, 418435064) start. 17-03-18 03:49:38.414 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP 1337 17-03-18 03:49:38.414 -07 000000606 INF: FPGA: Recv CAMDBLSNAP 17-03-18 03:49:38.414 -07 000000610 INF: FPGA: 'CAMDBLSNAP 411 411 198 198 28942 150' command took 2 ms to send, 1338 ms to get response, and 1344 ms overall 17-03-18 03:49:38.424 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503 17-03-18 03:49:38.424 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 6 at Y-position 63.22412109375, Z-Position -0.131681359077769. ------ 17-03-18 03:49:38.424 -07 000000474 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-18 03:49:38.424 -07 000000579 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.0626 mm, moving Z to -0.13811 mm 17-03-18 03:49:38.424 -07 000000579 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move 17-03-18 03:49:38.424 -07 000000444 INF: Y Motor: Entering MoveAbsStepped (target = 102500 steps, sync = True, waitForSettling = True) 17-03-18 03:49:38.424 -07 000000444 INF: Y Motor: Moving to 64.0626 mm, started at 63.2241 mm, delta = 0.8385 mm 17-03-18 03:49:38.424 -07 000000606 INF: Z Motor: Entering MoveAbsStepped (DAC = 30169, sync = True, waitForSettling = False) 17-03-18 03:49:38.424 -07 000000606 INF: Z Motor: Moving to -0.138105 mm, started at -0.131681 mm, distance = -6.42 um 17-03-18 03:49:38.424 -07 000000382 INF: FPGA: Recv FOCMRRCUR 17-03-18 03:49:38.434 -07 000000606 INF: FPGA: Xmit ZDACW 30169\n [Z Motor] 17-03-18 03:49:38.434 -07 000000474 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall 17-03-18 03:49:38.434 -07 000000569 INF: FPGA: Recv ZDACW 17-03-18 03:49:38.444 -07 000000606 INF: FPGA: 'ZDACW 30169' command took 0 ms to send, 0 ms to get response, and 12 ms overall 17-03-18 03:49:38.444 -07 000000444 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 03:49:38.444 -07 000000569 INF: FPGA: Recv YRDPOS 129483 17-03-18 03:49:38.454 -07 000000474 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror] 17-03-18 03:49:38.454 -07 000000444 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 23 ms overall 17-03-18 03:49:38.454 -07 000000444 INF: Y Motor: Encoder = 129483 = motor step 101158.6 = 63.2241 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 03:49:38.454 -07 000000444 INF: Y Motor: Last commanded position = 63.2326 mm (101172.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True 17-03-18 03:49:38.454 -07 000000444 INF: Y Motor: Moving 1342 steps-17 17-03-18 03:49:38.474 -07 000000606 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-18 03:49:38.474 -07 000000461 INF: FPGA: Recv ZDACR 30169 17-03-18 03:49:38.484 -07 000000444 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor] 17-03-18 03:49:38.484 -07 000000606 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 39 ms overall 17-03-18 03:49:38.484 -07 000000606 INF: Z Motor: MoveAbsStepped took 53 ms (did NOT wait for settling yet)) 17-03-18 03:49:38.624 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) end. Duration was 398 ms. 17-03-18 03:49:38.624 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms. 17-03-18 03:49:38.624 -07 000000501 INF: Camera: CopyActivePixFullImage start. 17-03-18 03:49:38.634 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2486767776, 0x0, 418435064) end. Duration was 399 ms. 17-03-18 03:49:38.634 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms. 17-03-18 03:49:38.634 -07 000000626 INF: Camera: CopyActivePixFullImage start. 17-03-18 03:49:38.634 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms. 17-03-18 03:49:38.634 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 406 ms. 17-03-18 03:49:38.634 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-18 03:49:38.644 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms. 17-03-18 03:49:38.654 -07 000000501 INF: FPGA: Recv FOCMRRFOC 17-03-18 03:49:38.654 -07 000000474 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 221 ms overall 17-03-18 03:49:38.864 -07 000000382 INF: FPGA: Recv YMVTILE 17-03-18 03:49:38.864 -07 000000444 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 370 ms to get response, and 409 ms overall 17-03-18 03:49:38.904 -07 000000444 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 03:49:38.914 -07 000000501 INF: FPGA: Recv YRDPOS 131189 17-03-18 03:49:38.914 -07 000000444 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall 17-03-18 03:49:38.914 -07 000000444 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 03:49:38.914 -07 000000444 INF: Y Motor: Position error before settling (table move) = -11 encoder counts (-0.005 mm) 17-03-18 03:49:38.914 -07 000000444 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 409 ms, distance = 0.838 mm, average velocity = 2.050 mm/sec 17-03-18 03:49:39.864 -07 000000444 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 03:49:39.864 -07 000000461 INF: FPGA: Recv YRDPOS 131189 17-03-18 03:49:39.874 -07 000000444 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:39.874 -07 000000444 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 03:49:39.894 -07 000000444 INF: Y Motor: After move to 64.062607, error = -0.005478, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm 17-03-18 03:49:39.894 -07 000000444 INF: Y Motor: Position error after settling (table move) = -11 encoder counts (-0.005 mm), Delta during settling = 0 counts (0.000 mm) 17-03-18 03:49:39.894 -07 000000444 INF: Y Motor: Moved to 64.0571 after 1469 ms (table move) 17-03-18 03:49:39.894 -07 000000579 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138105 mm (DAC = 30169) 17-03-18 03:49:39.894 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:49:39.904 -07 000000474 INF: FPGA: Recv ZSGSRD 30795 17-03-18 03:49:39.914 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-18 03:49:39.914 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:49:39.914 -07 000000606 INF: FPGA: Recv ZSGSRD 30794 17-03-18 03:49:39.924 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:39.924 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:49:39.924 -07 000000444 INF: FPGA: Recv ZSGSRD 30795 17-03-18 03:49:39.934 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:39.934 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:49:39.934 -07 000000461 INF: FPGA: Recv ZSGSRD 30784 17-03-18 03:49:39.944 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:39.944 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:49:39.944 -07 000000382 INF: FPGA: Recv ZSGSRD 30783 17-03-18 03:49:39.954 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:39.954 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:49:39.954 -07 000000569 INF: FPGA: Recv ZSGSRD 30785 17-03-18 03:49:39.964 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:39.964 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:49:39.964 -07 000000382 INF: FPGA: Recv ZSGSRD 30783 17-03-18 03:49:39.974 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:39.974 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:49:39.974 -07 000000438 INF: FPGA: Recv ZSGSRD 30796 17-03-18 03:49:39.984 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:39.984 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:49:39.984 -07 000000438 INF: FPGA: Recv ZSGSRD 30784 17-03-18 03:49:39.994 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:39.994 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:49:39.994 -07 000000626 INF: FPGA: Recv ZSGSRD 30788 17-03-18 03:49:40.004 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:40.004 -07 000000579 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-18 03:49:40.004 -07 000000474 INF: FPGA: Recv ZPIEZORD 26594 17-03-18 03:49:40.014 -07 000000579 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:40.014 -07 000000579 INF: Z Motor: Piezo is near 36.8 V (nominally 0 to 100 V), expect near 46.0 V, since DAC is at 4.603 V. Piezo Error = -9.2 V. 17-03-18 03:49:40.014 -07 000000579 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.1 um, Read 10 ADC samples: Avg = 30789 (-137.3 uncal um), Error = 0.8 uncal um, Median = 30786 (-137.3 uncal um), StdDev = 6 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 30783 (-137.3 uncal um), Max = 30796 (-137.4 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um) 17-03-18 03:49:40.014 -07 000000579 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30789, posNoise = 7, negNoise = 6 17-03-18 03:49:40.014 -07 000000579 INF: Z Motor: After move to -0.138105, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-18 03:49:40.014 -07 000000579 INF: Z Motor: Settle wait time = 1472 ms, measure time = 116 ms (allowed 150 ms), total time = 1588 ms 17-03-18 03:49:40.014 -07 000000579 INF: Z Motor: Waiting extra 34 ms after reading position to reach expected total of 150 ms 17-03-18 03:49:40.054 -07 000000579 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1625 ms 17-03-18 03:49:40.054 -07 000000579 INF: Y Motor: Restored settling times back to 3000 or 1100 ms 17-03-18 03:49:40.054 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-18 03:49:40.054 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-18 03:49:40.054 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-18 03:49:40.054 -07 000000382 INF: Disarm and arm camera sensor 0: ROITrigger start. 17-03-18 03:49:40.054 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-18 03:49:40.054 -07 000000606 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-18 03:49:40.054 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-18 03:49:40.054 -07 000000382 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start. 17-03-18 03:49:40.064 -07 000000382 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms. 17-03-18 03:49:40.064 -07 000000382 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start. 17-03-18 03:49:40.064 -07 000000382 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms. 17-03-18 03:49:40.064 -07 000000382 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms. 17-03-18 03:49:40.074 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera] 17-03-18 03:49:40.114 -07 000000438 INF: FPGA: Recv @CAMSNAP turning led on 40 17-03-18 03:49:40.414 -07 000000382 INF: FPGA: Recv @CAMSNAP img rdy 340 17-03-18 03:49:40.414 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340 17-03-18 03:49:40.414 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start. 17-03-18 03:49:40.414 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2404847376, 0x0, 559484976) start. 17-03-18 03:49:40.454 -07 000000606 INF: FPGA: Recv @CAMSNAP 380 17-03-18 03:49:40.454 -07 000000501 INF: FPGA: Recv CAMSNAP 17-03-18 03:49:40.454 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 378 ms to get response, and 384 ms overall 17-03-18 03:49:40.534 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2404847376, 0x0, 559484976) end. Duration was 114 ms. 17-03-18 03:49:40.534 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-18 03:49:40.534 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms. 17-03-18 03:49:40.534 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms. 17-03-18 03:49:40.554 -07 000000569 INF: Autofocus start 17-03-18 03:49:40.554 -07 000000579 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-18 03:49:40.554 -07 000000569 INF: MeasureProfile start 17-03-18 03:49:40.554 -07 000000474 INF: FPGA: Recv FOCMRRCUR 17-03-18 03:49:40.564 -07 000000579 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall 17-03-18 03:49:40.564 -07 000000579 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror] 17-03-18 03:49:40.564 -07 000000569 INF: MeasureProfile done 17-03-18 03:49:40.564 -07 000000569 INF: X=-80 Z correction [um]=-0.3928285 17-03-18 03:49:40.564 -07 000000569 INF: Autofocus finished 17-03-18 03:49:40.764 -07 000000438 INF: FPGA: Recv FOCMRRIMG 17-03-18 03:49:40.764 -07 000000579 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall 17-03-18 03:49:40.764 -07 000000610 INF: ------------ Scan Snapping tile 6 at Y-position 64.05712890625, Z-position -0.138118419643813. ---------- 17-03-18 03:49:40.774 -07 000000610 INF: Cycle 117 Tile 6 Exposure Settings A 411 G 198 T 198 C 411 17-03-18 03:49:40.774 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28596, sync = True, waitForSettling = True) 17-03-18 03:49:40.774 -07 000000610 INF: Z Motor: Moving to -0.130904 mm, started at -0.138118 mm, distance = 7.21 um 17-03-18 03:49:40.774 -07 000000610 INF: FPGA: Xmit ZDACW 28596\n [Z Motor] 17-03-18 03:49:40.774 -07 000000569 INF: FPGA: Recv ZDACW 17-03-18 03:49:40.784 -07 000000610 INF: FPGA: 'ZDACW 28596' command took 0 ms to send, 0 ms to get response, and 7 ms overall 17-03-18 03:49:40.784 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-18 03:49:40.784 -07 000000569 INF: FPGA: Recv ZDACR 28596 17-03-18 03:49:40.794 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:40.794 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-18 03:49:40.944 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:49:40.944 -07 000000438 INF: FPGA: Recv ZSGSRD 29669 17-03-18 03:49:40.954 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-18 03:49:40.954 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:49:40.954 -07 000000444 INF: FPGA: Recv ZSGSRD 29668 17-03-18 03:49:40.964 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:40.964 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:49:40.964 -07 000000455 INF: FPGA: Recv ZSGSRD 29673 17-03-18 03:49:40.974 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:40.974 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:49:40.974 -07 000000474 INF: FPGA: Recv ZSGSRD 29657 17-03-18 03:49:40.984 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:40.984 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:49:40.984 -07 000000569 INF: FPGA: Recv ZSGSRD 29669 17-03-18 03:49:40.994 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:40.994 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:49:40.994 -07 000000382 INF: FPGA: Recv ZSGSRD 29671 17-03-18 03:49:41.004 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:41.004 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:49:41.004 -07 000000561 INF: FPGA: Recv ZSGSRD 29665 17-03-18 03:49:41.014 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:41.014 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:49:41.014 -07 000000474 INF: FPGA: Recv ZSGSRD 29667 17-03-18 03:49:41.024 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:41.024 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:49:41.024 -07 000000467 INF: FPGA: Recv ZSGSRD 29666 17-03-18 03:49:41.034 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:41.034 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:49:41.034 -07 000000606 INF: FPGA: Recv ZSGSRD 29671 17-03-18 03:49:41.044 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:41.044 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-18 03:49:41.044 -07 000000561 INF: FPGA: Recv ZPIEZORD 25099 17-03-18 03:49:41.054 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:41.054 -07 000000610 INF: Z Motor: Piezo is near 33.6 V (nominally 0 to 100 V), expect near 43.6 V, since DAC is at 4.363 V. Piezo Error = -10.0 V. 17-03-18 03:49:41.054 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.9 um, Read 10 ADC samples: Avg = 29668 (-130.1 uncal um), Error = 0.8 uncal um, Median = 29668 (-130.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 29657 (-130.1 uncal um), Max = 29673 (-130.2 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 11 (0.1 uncal um) 17-03-18 03:49:41.054 -07 000000610 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29668, posNoise = 5, negNoise = 11 17-03-18 03:49:41.054 -07 000000610 INF: Z Motor: After move to -0.130904, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-18 03:49:41.054 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms) 17-03-18 03:49:41.054 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-18 03:49:41.054 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-18 03:49:41.054 -07 000000455 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-18 03:49:41.054 -07 000000606 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-18 03:49:41.054 -07 000000474 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start. 17-03-18 03:49:41.054 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-18 03:49:41.054 -07 000000461 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start. 17-03-18 03:49:41.054 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074704) start. 17-03-18 03:49:41.054 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms. 17-03-18 03:49:41.054 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start. 17-03-18 03:49:41.054 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-18 03:49:41.054 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start. 17-03-18 03:49:41.064 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms. 17-03-18 03:49:41.064 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start. 17-03-18 03:49:41.064 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms. 17-03-18 03:49:41.064 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start. 17-03-18 03:49:41.074 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms. 17-03-18 03:49:41.074 -07 000000461 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 19 ms. 17-03-18 03:49:41.074 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms. 17-03-18 03:49:41.074 -07 000000474 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms. 17-03-18 03:49:41.074 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 411 411 198 198 28773 150\n [Camera] 17-03-18 03:49:41.284 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning red on 192 17-03-18 03:49:41.614 -07 000000579 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-18 03:49:41.614 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 116. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1683, R2=1752, Total=3435. Warn if over 250 bubbles per interval. 17-03-18 03:49:41.694 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 603 17-03-18 03:49:41.694 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 603 17-03-18 03:49:41.694 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-18 03:49:41.694 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-18 03:49:41.694 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) start. 17-03-18 03:49:41.694 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 603 17-03-18 03:49:41.694 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 603 17-03-18 03:49:41.694 -07 000000444 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-18 03:49:41.694 -07 000000444 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-18 03:49:41.694 -07 000000444 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) start. 17-03-18 03:49:41.884 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28773 800 17-03-18 03:49:42.034 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP turning grn on 946 17-03-18 03:49:42.074 -07 000000444 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) end. Duration was 376 ms. 17-03-18 03:49:42.074 -07 000000444 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms. 17-03-18 03:49:42.074 -07 000000444 INF: Camera: CopyActivePixFullImage start. 17-03-18 03:49:42.074 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) end. Duration was 381 ms. 17-03-18 03:49:42.074 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms. 17-03-18 03:49:42.074 -07 000000501 INF: Camera: CopyActivePixFullImage start. 17-03-18 03:49:42.074 -07 000000444 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-18 03:49:42.074 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-18 03:49:42.074 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms. 17-03-18 03:49:42.084 -07 000000444 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms. 17-03-18 03:49:42.234 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1144 17-03-18 03:49:42.234 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1144 17-03-18 03:49:42.234 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-18 03:49:42.234 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-18 03:49:42.234 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 2620985504, 0x0, 391868352) start. 17-03-18 03:49:42.234 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1144 17-03-18 03:49:42.234 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1144 17-03-18 03:49:42.234 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-18 03:49:42.234 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-18 03:49:42.234 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 2684358704, 0x0, 418435064) start. 17-03-18 03:49:42.424 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP 1337 17-03-18 03:49:42.424 -07 000000626 INF: FPGA: Recv CAMDBLSNAP 17-03-18 03:49:42.424 -07 000000610 INF: FPGA: 'CAMDBLSNAP 411 411 198 198 28773 150' command took 2 ms to send, 1334 ms to get response, and 1345 ms overall 17-03-18 03:49:42.424 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503 17-03-18 03:49:42.424 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 7 at Y-position 64.05712890625, Z-Position -0.130916877832899. ------ 17-03-18 03:49:42.424 -07 000000461 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-18 03:49:42.424 -07 000000474 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.8926 mm, moving Z to -0.13752 mm 17-03-18 03:49:42.424 -07 000000474 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move 17-03-18 03:49:42.434 -07 000000480 INF: FPGA: Recv FOCMRRCUR 17-03-18 03:49:42.434 -07 000000461 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 3 ms overall 17-03-18 03:49:42.434 -07 000000382 INF: Y Motor: Entering MoveAbsStepped (target = 103828 steps, sync = True, waitForSettling = True) 17-03-18 03:49:42.434 -07 000000382 INF: Y Motor: Moving to 64.8926 mm, started at 64.0571 mm, delta = 0.8355 mm 17-03-18 03:49:42.434 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 03:49:42.434 -07 000000438 INF: Z Motor: Entering MoveAbsStepped (DAC = 30040, sync = True, waitForSettling = False) 17-03-18 03:49:42.434 -07 000000438 INF: Z Motor: Moving to -0.137514 mm, started at -0.130917 mm, distance = -6.60 um 17-03-18 03:49:42.434 -07 000000444 INF: FPGA: Recv YRDPOS 131189 17-03-18 03:49:42.444 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall 17-03-18 03:49:42.444 -07 000000382 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 03:49:42.444 -07 000000382 INF: Y Motor: Last commanded position = 64.0626 mm (102500.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True 17-03-18 03:49:42.444 -07 000000382 INF: Y Motor: Moving 1337 steps-11 17-03-18 03:49:42.444 -07 000000438 INF: FPGA: Xmit ZDACW 30040\n [Z Motor] 17-03-18 03:49:42.444 -07 000000569 INF: FPGA: Recv ZDACW 17-03-18 03:49:42.454 -07 000000461 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror] 17-03-18 03:49:42.454 -07 000000438 INF: FPGA: 'ZDACW 30040' command took 0 ms to send, 0 ms to get response, and 16 ms overall 17-03-18 03:49:42.464 -07 000000382 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor] 17-03-18 03:49:42.474 -07 000000438 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-18 03:49:42.474 -07 000000501 INF: FPGA: Recv ZDACR 30040 17-03-18 03:49:42.484 -07 000000438 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall 17-03-18 03:49:42.484 -07 000000438 INF: Z Motor: MoveAbsStepped took 46 ms (did NOT wait for settling yet)) 17-03-18 03:49:42.634 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 2620985504, 0x0, 391868352) end. Duration was 400 ms. 17-03-18 03:49:42.634 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms. 17-03-18 03:49:42.634 -07 000000579 INF: Camera: CopyActivePixFullImage start. 17-03-18 03:49:42.634 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 2684358704, 0x0, 418435064) end. Duration was 398 ms. 17-03-18 03:49:42.634 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms. 17-03-18 03:49:42.634 -07 000000455 INF: Camera: CopyActivePixFullImage start. 17-03-18 03:49:42.634 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-18 03:49:42.644 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms. 17-03-18 03:49:42.644 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 408 ms. 17-03-18 03:49:42.644 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms. 17-03-18 03:49:42.654 -07 000000467 INF: FPGA: Recv FOCMRRFOC 17-03-18 03:49:42.654 -07 000000461 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 219 ms overall 17-03-18 03:49:42.834 -07 000000444 INF: FPGA: Recv YMVTILE 17-03-18 03:49:42.834 -07 000000382 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall 17-03-18 03:49:42.884 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 03:49:42.884 -07 000000438 INF: FPGA: Recv YRDPOS 132872 17-03-18 03:49:42.894 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall 17-03-18 03:49:42.894 -07 000000382 INF: Y Motor: Encoder = 132872 = motor step 103806.3 = 64.8789 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 03:49:42.894 -07 000000382 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm) 17-03-18 03:49:42.894 -07 000000382 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.835 mm, average velocity = 2.104 mm/sec 17-03-18 03:49:43.294 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 117, FrontChillerTemperature: 4.015368, 17-03-18 03:49:43.844 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 03:49:43.844 -07 000000626 INF: FPGA: Recv YRDPOS 132872 17-03-18 03:49:43.854 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:43.854 -07 000000382 INF: Y Motor: Encoder = 132872 = motor step 103806.3 = 64.8789 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 03:49:43.884 -07 000000382 INF: Y Motor: After move to 64.892609, error = -0.013702, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm 17-03-18 03:49:43.884 -07 000000382 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm) 17-03-18 03:49:43.884 -07 000000382 INF: Y Motor: Moved to 64.8789 after 1450 ms (table move) 17-03-18 03:49:43.884 -07 000000474 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137514 mm (DAC = 30040) 17-03-18 03:49:43.904 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:49:43.904 -07 000000569 INF: FPGA: Recv ZSGSRD 30698 17-03-18 03:49:43.914 -07 000000474 INF: FPGA: 'ZSGSRD' command took 5 ms to send, 0 ms to get response, and 23 ms overall 17-03-18 03:49:43.914 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:49:43.914 -07 000000606 INF: FPGA: Recv ZSGSRD 30700 17-03-18 03:49:43.924 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:43.924 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:49:43.924 -07 000000444 INF: FPGA: Recv ZSGSRD 30694 17-03-18 03:49:43.934 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:43.934 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:49:43.934 -07 000000438 INF: FPGA: Recv ZSGSRD 30697 17-03-18 03:49:43.944 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:43.944 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:49:43.944 -07 000000569 INF: FPGA: Recv ZSGSRD 30702 17-03-18 03:49:43.954 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-18 03:49:43.954 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:49:43.954 -07 000000444 INF: FPGA: Recv ZSGSRD 30700 17-03-18 03:49:43.964 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:43.964 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:49:43.964 -07 000000501 INF: FPGA: Recv ZSGSRD 30691 17-03-18 03:49:43.974 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:43.974 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:49:43.974 -07 000000480 INF: FPGA: Recv ZSGSRD 30693 17-03-18 03:49:43.984 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall 17-03-18 03:49:43.984 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:49:43.984 -07 000000444 INF: FPGA: Recv ZSGSRD 30696 17-03-18 03:49:43.994 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:43.994 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:49:43.994 -07 000000461 INF: FPGA: Recv ZSGSRD 30701 17-03-18 03:49:44.004 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:44.004 -07 000000474 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-18 03:49:44.004 -07 000000455 INF: FPGA: Recv ZPIEZORD 26480 17-03-18 03:49:44.014 -07 000000474 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:44.014 -07 000000474 INF: Z Motor: Piezo is near 36.6 V (nominally 0 to 100 V), expect near 45.8 V, since DAC is at 4.584 V. Piezo Error = -9.3 V. 17-03-18 03:49:44.014 -07 000000474 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.5 um, Read 10 ADC samples: Avg = 30697 (-136.7 uncal um), Error = 0.8 uncal um, Median = 30698 (-136.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 30691 (-136.7 uncal um), Max = 30702 (-136.8 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um) 17-03-18 03:49:44.014 -07 000000474 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30697, posNoise = 5, negNoise = 6 17-03-18 03:49:44.014 -07 000000474 INF: Z Motor: After move to -0.137514, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-18 03:49:44.014 -07 000000474 INF: Z Motor: Settle wait time = 1453 ms, measure time = 124 ms (allowed 150 ms), total time = 1577 ms 17-03-18 03:49:44.014 -07 000000474 INF: Z Motor: Waiting extra 26 ms after reading position to reach expected total of 150 ms 17-03-18 03:49:44.044 -07 000000474 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1610 ms 17-03-18 03:49:44.044 -07 000000474 INF: Y Motor: Restored settling times back to 3000 or 1100 ms 17-03-18 03:49:44.044 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-18 03:49:44.044 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-18 03:49:44.044 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-18 03:49:44.044 -07 000000461 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-18 03:49:44.044 -07 000000579 INF: Disarm and arm camera sensor 0: ROITrigger start. 17-03-18 03:49:44.044 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-18 03:49:44.044 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-18 03:49:44.044 -07 000000579 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start. 17-03-18 03:49:44.054 -07 000000579 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms. 17-03-18 03:49:44.054 -07 000000579 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start. 17-03-18 03:49:44.064 -07 000000579 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms. 17-03-18 03:49:44.064 -07 000000579 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms. 17-03-18 03:49:44.064 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera] 17-03-18 03:49:44.114 -07 000000480 INF: FPGA: Recv @CAMSNAP turning led on 40 17-03-18 03:49:44.414 -07 000000455 INF: FPGA: Recv @CAMSNAP img rdy 340 17-03-18 03:49:44.414 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340 17-03-18 03:49:44.414 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start. 17-03-18 03:49:44.414 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1201016592, 0x0, 559484976) start. 17-03-18 03:49:44.454 -07 000000501 INF: FPGA: Recv @CAMSNAP 380 17-03-18 03:49:44.454 -07 000000461 INF: FPGA: Recv CAMSNAP 17-03-18 03:49:44.454 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 382 ms to get response, and 384 ms overall 17-03-18 03:49:44.524 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1201016592, 0x0, 559484976) end. Duration was 115 ms. 17-03-18 03:49:44.524 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-18 03:49:44.534 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms. 17-03-18 03:49:44.534 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms. 17-03-18 03:49:44.554 -07 000000480 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-18 03:49:44.554 -07 000000455 INF: Autofocus start 17-03-18 03:49:44.554 -07 000000455 INF: MeasureProfile start 17-03-18 03:49:44.554 -07 000000474 INF: FPGA: Recv FOCMRRCUR 17-03-18 03:49:44.564 -07 000000480 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall 17-03-18 03:49:44.564 -07 000000480 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror] 17-03-18 03:49:44.564 -07 000000455 INF: MeasureProfile done 17-03-18 03:49:44.564 -07 000000455 INF: X=16 Z correction [um]=0.0530179 17-03-18 03:49:44.564 -07 000000455 INF: Autofocus finished 17-03-18 03:49:44.764 -07 000000569 INF: FPGA: Recv FOCMRRIMG 17-03-18 03:49:44.764 -07 000000480 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall 17-03-18 03:49:44.764 -07 000000610 INF: ------------ Scan Snapping tile 7 at Y-position 64.87890625, Z-position -0.137527392126771. ---------- 17-03-18 03:49:44.764 -07 000000610 INF: Cycle 117 Tile 7 Exposure Settings A 411 G 198 T 198 C 411 17-03-18 03:49:44.764 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28565, sync = True, waitForSettling = True) 17-03-18 03:49:44.774 -07 000000610 INF: Z Motor: Moving to -0.130762 mm, started at -0.137527 mm, distance = 6.77 um 17-03-18 03:49:44.774 -07 000000610 INF: FPGA: Xmit ZDACW 28565\n [Z Motor] 17-03-18 03:49:44.774 -07 000000461 INF: FPGA: Recv ZDACW 17-03-18 03:49:44.784 -07 000000610 INF: FPGA: 'ZDACW 28565' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:44.784 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-18 03:49:44.784 -07 000000474 INF: FPGA: Recv ZDACR 28565 17-03-18 03:49:44.794 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:44.794 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-18 03:49:44.944 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:49:44.944 -07 000000444 INF: FPGA: Recv ZSGSRD 29648 17-03-18 03:49:44.954 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-18 03:49:44.954 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:49:44.954 -07 000000579 INF: FPGA: Recv ZSGSRD 29651 17-03-18 03:49:44.964 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:44.964 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:49:44.964 -07 000000474 INF: FPGA: Recv ZSGSRD 29641 17-03-18 03:49:44.974 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:44.974 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:49:44.974 -07 000000501 INF: FPGA: Recv ZSGSRD 29646 17-03-18 03:49:44.984 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:44.984 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:49:44.984 -07 000000474 INF: FPGA: Recv ZSGSRD 29646 17-03-18 03:49:44.994 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:44.994 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:49:44.994 -07 000000569 INF: FPGA: Recv ZSGSRD 29640 17-03-18 03:49:45.004 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:45.004 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:49:45.004 -07 000000455 INF: FPGA: Recv ZSGSRD 29646 17-03-18 03:49:45.014 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:45.014 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:49:45.014 -07 000000561 INF: FPGA: Recv ZSGSRD 29642 17-03-18 03:49:45.024 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:45.024 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:49:45.024 -07 000000474 INF: FPGA: Recv ZSGSRD 29647 17-03-18 03:49:45.034 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:45.034 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:49:45.034 -07 000000480 INF: FPGA: Recv ZSGSRD 29652 17-03-18 03:49:45.044 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:45.044 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-18 03:49:45.044 -07 000000474 INF: FPGA: Recv ZPIEZORD 25121 17-03-18 03:49:45.054 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:45.054 -07 000000610 INF: Z Motor: Piezo is near 33.7 V (nominally 0 to 100 V), expect near 43.6 V, since DAC is at 4.359 V. Piezo Error = -9.9 V. 17-03-18 03:49:45.054 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.8 um, Read 10 ADC samples: Avg = 29646 (-130.0 uncal um), Error = 0.8 uncal um, Median = 29646 (-130.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29640 (-130.0 uncal um), Max = 29652 (-130.0 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um) 17-03-18 03:49:45.054 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29646, posNoise = 6, negNoise = 6 17-03-18 03:49:45.054 -07 000000610 INF: Z Motor: After move to -0.130762, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-18 03:49:45.054 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms) 17-03-18 03:49:45.054 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-18 03:49:45.054 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-18 03:49:45.054 -07 000000455 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-18 03:49:45.054 -07 000000444 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-18 03:49:45.054 -07 000000461 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start. 17-03-18 03:49:45.054 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-18 03:49:45.054 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start. 17-03-18 03:49:45.054 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) start. 17-03-18 03:49:45.054 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms. 17-03-18 03:49:45.054 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start. 17-03-18 03:49:45.054 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms. 17-03-18 03:49:45.054 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start. 17-03-18 03:49:45.054 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms. 17-03-18 03:49:45.064 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start. 17-03-18 03:49:45.064 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms. 17-03-18 03:49:45.064 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start. 17-03-18 03:49:45.074 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 11 ms. 17-03-18 03:49:45.074 -07 000000461 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms. 17-03-18 03:49:45.074 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms. 17-03-18 03:49:45.074 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms. 17-03-18 03:49:45.074 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 411 411 198 198 28741 150\n [Camera] 17-03-18 03:49:45.274 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning red on 192 17-03-18 03:49:45.684 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 603 17-03-18 03:49:45.684 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 603 17-03-18 03:49:45.684 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-18 03:49:45.684 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-18 03:49:45.684 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 2719780968, 0x0, 391868352) start. 17-03-18 03:49:45.694 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 603 17-03-18 03:49:45.694 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 603 17-03-18 03:49:45.694 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-18 03:49:45.694 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-18 03:49:45.694 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 2755203232, 0x0, 418435064) start. 17-03-18 03:49:45.874 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28741 796 17-03-18 03:49:46.034 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning grn on 946 17-03-18 03:49:46.064 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 2755203232, 0x0, 418435064) end. Duration was 373 ms. 17-03-18 03:49:46.064 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 373 ms. 17-03-18 03:49:46.064 -07 000000579 INF: Camera: CopyActivePixFullImage start. 17-03-18 03:49:46.064 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 2719780968, 0x0, 391868352) end. Duration was 377 ms. 17-03-18 03:49:46.064 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms. 17-03-18 03:49:46.064 -07 000000474 INF: Camera: CopyActivePixFullImage start. 17-03-18 03:49:46.074 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-18 03:49:46.074 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms. 17-03-18 03:49:46.074 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms. 17-03-18 03:49:46.074 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 386 ms. 17-03-18 03:49:46.224 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1144 17-03-18 03:49:46.224 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1144 17-03-18 03:49:46.224 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-18 03:49:46.374 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1144 17-03-18 03:49:46.374 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1144 17-03-18 03:49:46.374 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-18 03:49:46.374 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-18 03:49:46.374 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 2818576432, 0x0, 391868352) start. 17-03-18 03:49:46.374 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-18 03:49:46.374 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 2165554656, 0x0, 418435064) start. 17-03-18 03:49:46.414 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP 1336 17-03-18 03:49:46.414 -07 000000561 INF: FPGA: Recv CAMDBLSNAP 17-03-18 03:49:46.414 -07 000000610 INF: FPGA: 'CAMDBLSNAP 411 411 198 198 28741 150' command took 2 ms to send, 1338 ms to get response, and 1343 ms overall 17-03-18 03:49:46.424 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503 17-03-18 03:49:46.424 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 8 at Y-position 64.87890625, Z-Position -0.13077554516578. ------ 17-03-18 03:49:46.424 -07 000000501 INF: Y Motor: MoveYZ optimized starting. Moving Y to 65.7226 mm, moving Z to -0.13745 mm 17-03-18 03:49:46.424 -07 000000501 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move 17-03-18 03:49:46.424 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-18 03:49:46.424 -07 000000461 INF: Y Motor: Entering MoveAbsStepped (target = 105156 steps, sync = True, waitForSettling = True) 17-03-18 03:49:46.424 -07 000000461 INF: Y Motor: Moving to 65.7226 mm, started at 64.8789 mm, delta = 0.8437 mm 17-03-18 03:49:46.424 -07 000000474 INF: Z Motor: Entering MoveAbsStepped (DAC = 30026, sync = True, waitForSettling = False) 17-03-18 03:49:46.424 -07 000000474 INF: Z Motor: Moving to -0.137450 mm, started at -0.130776 mm, distance = -6.67 um 17-03-18 03:49:46.434 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 03:49:46.434 -07 000000438 INF: FPGA: Recv FOCMRRCUR 17-03-18 03:49:46.434 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall 17-03-18 03:49:46.434 -07 000000438 INF: FPGA: Recv YRDPOS 132872 17-03-18 03:49:46.444 -07 000000474 INF: FPGA: Xmit ZDACW 30026\n [Z Motor] 17-03-18 03:49:46.444 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 13 ms overall 17-03-18 03:49:46.444 -07 000000461 INF: Y Motor: Encoder = 132872 = motor step 103806.3 = 64.8789 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 03:49:46.444 -07 000000461 INF: Y Motor: Last commanded position = 64.8926 mm (103828.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True 17-03-18 03:49:46.444 -07 000000461 INF: Y Motor: Moving 1350 steps-28 17-03-18 03:49:46.444 -07 000000444 INF: FPGA: Recv ZDACW 17-03-18 03:49:46.454 -07 000000474 INF: FPGA: 'ZDACW 30026' command took 0 ms to send, 0 ms to get response, and 23 ms overall 17-03-18 03:49:46.454 -07 000000569 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror] 17-03-18 03:49:46.464 -07 000000461 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor] 17-03-18 03:49:46.474 -07 000000474 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-18 03:49:46.474 -07 000000012 INF: FPGA: Recv ZDACR 30026 17-03-18 03:49:46.484 -07 000000474 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall 17-03-18 03:49:46.484 -07 000000474 INF: Z Motor: MoveAbsStepped took 53 ms (did NOT wait for settling yet)) 17-03-18 03:49:46.614 -07 000000444 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-18 03:49:46.614 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 116. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1683, R2=1752, Total=3435. Warn if over 250 bubbles per interval. 17-03-18 03:49:46.654 -07 000000579 INF: FPGA: Recv FOCMRRFOC 17-03-18 03:49:46.654 -07 000000569 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall 17-03-18 03:49:46.754 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 2165554656, 0x0, 418435064) end. Duration was 377 ms. 17-03-18 03:49:46.754 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms. 17-03-18 03:49:46.754 -07 000000455 INF: Camera: CopyActivePixFullImage start. 17-03-18 03:49:46.754 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-18 03:49:46.764 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 2818576432, 0x0, 391868352) end. Duration was 390 ms. 17-03-18 03:49:46.764 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms. 17-03-18 03:49:46.764 -07 000000480 INF: Camera: CopyActivePixFullImage start. 17-03-18 03:49:46.764 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms. 17-03-18 03:49:46.764 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-18 03:49:46.764 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 540 ms. 17-03-18 03:49:46.834 -07 000000561 INF: FPGA: Recv YMVTILE 17-03-18 03:49:46.834 -07 000000461 INF: FPGA: 'YMVTILE 1327' command took 1 ms to send, 368 ms to get response, and 397 ms overall 17-03-18 03:49:46.884 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 03:49:46.884 -07 000000474 INF: FPGA: Recv YRDPOS 134582 17-03-18 03:49:46.894 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall 17-03-18 03:49:46.894 -07 000000461 INF: Y Motor: Encoder = 134582 = motor step 105142.2 = 65.7139 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 03:49:46.894 -07 000000461 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm) 17-03-18 03:49:46.894 -07 000000461 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.844 mm, average velocity = 2.125 mm/sec 17-03-18 03:49:47.844 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 03:49:47.844 -07 000000480 INF: FPGA: Recv YRDPOS 134582 17-03-18 03:49:47.854 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-18 03:49:47.854 -07 000000461 INF: Y Motor: Encoder = 134582 = motor step 105142.2 = 65.7139 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 03:49:47.884 -07 000000461 INF: Y Motor: After move to 65.722610, error = -0.008743, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm 17-03-18 03:49:47.884 -07 000000461 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm) 17-03-18 03:49:47.884 -07 000000461 INF: Y Motor: Moved to 65.7139 after 1457 ms (table move) 17-03-18 03:49:47.884 -07 000000501 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137450 mm (DAC = 30026) 17-03-18 03:49:47.884 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:49:47.884 -07 000000455 INF: FPGA: Recv ZSGSRD 30682 17-03-18 03:49:47.894 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall 17-03-18 03:49:47.894 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:49:47.894 -07 000000561 INF: FPGA: Recv ZSGSRD 30684 17-03-18 03:49:47.904 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall 17-03-18 03:49:47.904 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:49:47.904 -07 000000474 INF: FPGA: Recv ZSGSRD 30686 17-03-18 03:49:47.914 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:47.914 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:49:47.914 -07 000000012 INF: FPGA: Recv ZSGSRD 30687 17-03-18 03:49:47.924 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:47.924 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:49:47.924 -07 000000561 INF: FPGA: Recv ZSGSRD 30688 17-03-18 03:49:47.934 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:47.934 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:49:47.934 -07 000000012 INF: FPGA: Recv ZSGSRD 30686 17-03-18 03:49:47.944 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:47.944 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:49:47.944 -07 000000474 INF: FPGA: Recv ZSGSRD 30685 17-03-18 03:49:47.954 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:47.954 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:49:47.954 -07 000000012 INF: FPGA: Recv ZSGSRD 30677 17-03-18 03:49:47.964 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:47.964 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:49:47.964 -07 000000569 INF: FPGA: Recv ZSGSRD 30683 17-03-18 03:49:47.974 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:47.974 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:49:47.974 -07 000000561 INF: FPGA: Recv ZSGSRD 30688 17-03-18 03:49:47.984 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:47.984 -07 000000501 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-18 03:49:47.984 -07 000000569 INF: FPGA: Recv ZPIEZORD 26486 17-03-18 03:49:47.994 -07 000000501 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:47.994 -07 000000501 INF: Z Motor: Piezo is near 36.6 V (nominally 0 to 100 V), expect near 45.8 V, since DAC is at 4.582 V. Piezo Error = -9.2 V. 17-03-18 03:49:47.994 -07 000000501 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.5 um, Read 10 ADC samples: Avg = 30685 (-136.7 uncal um), Error = 0.8 uncal um, Median = 30686 (-136.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 30677 (-136.6 uncal um), Max = 30688 (-136.7 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um) 17-03-18 03:49:47.994 -07 000000501 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30685, posNoise = 3, negNoise = 8 17-03-18 03:49:47.994 -07 000000501 INF: Z Motor: After move to -0.137450, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-18 03:49:47.994 -07 000000501 INF: Z Motor: Settle wait time = 1460 ms, measure time = 104 ms (allowed 150 ms), total time = 1564 ms 17-03-18 03:49:47.994 -07 000000501 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms 17-03-18 03:49:48.044 -07 000000501 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1616 ms 17-03-18 03:49:48.044 -07 000000501 INF: Y Motor: Restored settling times back to 3000 or 1100 ms 17-03-18 03:49:48.044 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-18 03:49:48.044 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-18 03:49:48.044 -07 000000444 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-18 03:49:48.044 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger start. 17-03-18 03:49:48.044 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-18 03:49:48.054 -07 000000579 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-18 03:49:48.054 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 3 ms. 17-03-18 03:49:48.054 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start. 17-03-18 03:49:48.054 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms. 17-03-18 03:49:48.054 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start. 17-03-18 03:49:48.064 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms. 17-03-18 03:49:48.064 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 13 ms. 17-03-18 03:49:48.064 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera] 17-03-18 03:49:48.104 -07 000000474 INF: FPGA: Recv @CAMSNAP turning led on 40 17-03-18 03:49:48.404 -07 000000461 INF: FPGA: Recv @CAMSNAP img rdy 340 17-03-18 03:49:48.404 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340 17-03-18 03:49:48.404 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start. 17-03-18 03:49:48.414 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2200976920, 0x0, 559484976) start. 17-03-18 03:49:48.444 -07 000000382 INF: FPGA: Recv @CAMSNAP 380 17-03-18 03:49:48.444 -07 000000501 INF: FPGA: Recv CAMSNAP 17-03-18 03:49:48.444 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 379 ms to get response, and 384 ms overall 17-03-18 03:49:48.524 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2200976920, 0x0, 559484976) end. Duration was 116 ms. 17-03-18 03:49:48.524 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-18 03:49:48.524 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms. 17-03-18 03:49:48.524 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms. 17-03-18 03:49:48.544 -07 000000480 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-18 03:49:48.544 -07 000000579 INF: Autofocus start 17-03-18 03:49:48.544 -07 000000579 INF: MeasureProfile start 17-03-18 03:49:48.544 -07 000000626 INF: FPGA: Recv FOCMRRCUR 17-03-18 03:49:48.554 -07 000000480 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall 17-03-18 03:49:48.554 -07 000000480 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror] 17-03-18 03:49:48.554 -07 000000579 INF: MeasureProfile done 17-03-18 03:49:48.554 -07 000000579 INF: X=0 Z correction [um]=-0.02394831 17-03-18 03:49:48.554 -07 000000579 INF: Autofocus finished 17-03-18 03:49:48.654 -07 000000012 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 117, FrontChillerTemperature: 3.993549, 17-03-18 03:49:48.754 -07 000000461 INF: FPGA: Recv FOCMRRIMG 17-03-18 03:49:48.754 -07 000000480 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall 17-03-18 03:49:48.754 -07 000000610 INF: ------------ Scan Snapping tile 8 at Y-position 65.7138671875, Z-position -0.13745030158107. ---------- 17-03-18 03:49:48.754 -07 000000610 INF: Cycle 117 Tile 8 Exposure Settings A 411 G 198 T 198 C 411 17-03-18 03:49:48.764 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28533, sync = True, waitForSettling = True) 17-03-18 03:49:48.764 -07 000000610 INF: Z Motor: Moving to -0.130616 mm, started at -0.137450 mm, distance = 6.83 um 17-03-18 03:49:48.764 -07 000000610 INF: FPGA: Xmit ZDACW 28533\n [Z Motor] 17-03-18 03:49:48.764 -07 000000438 INF: FPGA: Recv ZDACW 17-03-18 03:49:48.774 -07 000000610 INF: FPGA: 'ZDACW 28533' command took 0 ms to send, 0 ms to get response, and 7 ms overall 17-03-18 03:49:48.774 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-18 03:49:48.774 -07 000000501 INF: FPGA: Recv ZDACR 28533 17-03-18 03:49:48.784 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:48.784 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-18 03:49:48.934 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:49:48.934 -07 000000012 INF: FPGA: Recv ZSGSRD 29619 17-03-18 03:49:48.944 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-18 03:49:48.944 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:49:48.944 -07 000000480 INF: FPGA: Recv ZSGSRD 29626 17-03-18 03:49:48.954 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:48.954 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:49:48.954 -07 000000012 INF: FPGA: Recv ZSGSRD 29624 17-03-18 03:49:48.964 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:48.964 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:49:48.964 -07 000000626 INF: FPGA: Recv ZSGSRD 29616 17-03-18 03:49:48.974 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:48.974 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:49:48.974 -07 000000012 INF: FPGA: Recv ZSGSRD 29624 17-03-18 03:49:48.984 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:48.984 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:49:48.984 -07 000000480 INF: FPGA: Recv ZSGSRD 29625 17-03-18 03:49:48.994 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:48.994 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:49:48.994 -07 000000012 INF: FPGA: Recv ZSGSRD 29622 17-03-18 03:49:49.004 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:49.004 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:49:49.004 -07 000000579 INF: FPGA: Recv ZSGSRD 29622 17-03-18 03:49:49.014 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:49.014 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:49:49.014 -07 000000480 INF: FPGA: Recv ZSGSRD 29621 17-03-18 03:49:49.024 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:49.024 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:49:49.024 -07 000000012 INF: FPGA: Recv ZSGSRD 29627 17-03-18 03:49:49.034 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:49.034 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-18 03:49:49.034 -07 000000480 INF: FPGA: Recv ZPIEZORD 25120 17-03-18 03:49:49.044 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:49.044 -07 000000610 INF: Z Motor: Piezo is near 33.7 V (nominally 0 to 100 V), expect near 43.5 V, since DAC is at 4.354 V. Piezo Error = -9.9 V. 17-03-18 03:49:49.044 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.6 um, Read 10 ADC samples: Avg = 29623 (-129.8 uncal um), Error = 0.8 uncal um, Median = 29623 (-129.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29616 (-129.8 uncal um), Max = 29627 (-129.9 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um) 17-03-18 03:49:49.044 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29623, posNoise = 4, negNoise = 7 17-03-18 03:49:49.044 -07 000000610 INF: Z Motor: After move to -0.130616, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-18 03:49:49.044 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms) 17-03-18 03:49:49.044 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-18 03:49:49.044 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-18 03:49:49.044 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-18 03:49:49.044 -07 000000474 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-18 03:49:49.044 -07 000000455 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start. 17-03-18 03:49:49.044 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-18 03:49:49.044 -07 000000461 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start. 17-03-18 03:49:49.044 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074704) start. 17-03-18 03:49:49.044 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-18 03:49:49.044 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start. 17-03-18 03:49:49.044 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms. 17-03-18 03:49:49.044 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start. 17-03-18 03:49:49.054 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms. 17-03-18 03:49:49.054 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start. 17-03-18 03:49:49.054 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms. 17-03-18 03:49:49.054 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start. 17-03-18 03:49:49.064 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms. 17-03-18 03:49:49.064 -07 000000455 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms. 17-03-18 03:49:49.064 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms. 17-03-18 03:49:49.064 -07 000000461 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms. 17-03-18 03:49:49.064 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 411 411 198 198 28710 150\n [Camera] 17-03-18 03:49:49.264 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning red on 192 17-03-18 03:49:49.674 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 603 17-03-18 03:49:49.674 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 603 17-03-18 03:49:49.674 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-18 03:49:49.674 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 603 17-03-18 03:49:49.674 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 603 17-03-18 03:49:49.674 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-18 03:49:49.684 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-18 03:49:49.684 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 2220058304, 0x0, 391868352) start. 17-03-18 03:49:49.684 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-18 03:49:49.684 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start. 17-03-18 03:49:49.864 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28710 796 17-03-18 03:49:50.134 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 443 ms. 17-03-18 03:49:50.134 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 444 ms. 17-03-18 03:49:50.134 -07 000000438 INF: Camera: CopyActivePixFullImage start. 17-03-18 03:49:50.134 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning grn on 946 17-03-18 03:49:50.134 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 2220058304, 0x0, 391868352) end. Duration was 450 ms. 17-03-18 03:49:50.134 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 452 ms. 17-03-18 03:49:50.134 -07 000000480 INF: Camera: CopyActivePixFullImage start. 17-03-18 03:49:50.134 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-18 03:49:50.134 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-18 03:49:50.134 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 461 ms. 17-03-18 03:49:50.144 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 464 ms. 17-03-18 03:49:50.214 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1144 17-03-18 03:49:50.214 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1144 17-03-18 03:49:50.214 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-18 03:49:50.214 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1144 17-03-18 03:49:50.214 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1144 17-03-18 03:49:50.214 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-18 03:49:50.224 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-18 03:49:50.224 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start. 17-03-18 03:49:50.224 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-18 03:49:50.224 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 2165554656, 0x0, 418435064) start. 17-03-18 03:49:50.404 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP 1336 17-03-18 03:49:50.404 -07 000000438 INF: FPGA: Recv CAMDBLSNAP 17-03-18 03:49:50.404 -07 000000610 INF: FPGA: 'CAMDBLSNAP 411 411 198 198 28710 150' command took 2 ms to send, 1337 ms to get response, and 1343 ms overall 17-03-18 03:49:50.404 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503 17-03-18 03:49:50.404 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 9 at Y-position 65.7138671875, Z-Position -0.13062778828652. ------ 17-03-18 03:49:50.414 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-18 03:49:50.414 -07 000000444 INF: Y Motor: MoveYZ optimized starting. Moving Y to 66.5526 mm, moving Z to -0.13695 mm 17-03-18 03:49:50.414 -07 000000444 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move 17-03-18 03:49:50.414 -07 000000382 INF: FPGA: Recv FOCMRRCUR 17-03-18 03:49:50.414 -07 000000438 INF: Y Motor: Entering MoveAbsStepped (target = 106484 steps, sync = True, waitForSettling = True) 17-03-18 03:49:50.414 -07 000000438 INF: Y Motor: Moving to 66.5526 mm, started at 65.7139 mm, delta = 0.8387 mm 17-03-18 03:49:50.414 -07 000000474 INF: Z Motor: Entering MoveAbsStepped (DAC = 29917, sync = True, waitForSettling = False) 17-03-18 03:49:50.414 -07 000000474 INF: Z Motor: Moving to -0.136951 mm, started at -0.130628 mm, distance = -6.32 um 17-03-18 03:49:50.424 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall 17-03-18 03:49:50.424 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 03:49:50.424 -07 000000501 INF: FPGA: Recv YRDPOS 134583 17-03-18 03:49:50.434 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-18 03:49:50.434 -07 000000438 INF: Y Motor: Encoder = 134583 = motor step 105143.0 = 65.7144 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 03:49:50.434 -07 000000569 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror] 17-03-18 03:49:50.434 -07 000000438 INF: Y Motor: Last commanded position = 65.7226 mm (105156.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True 17-03-18 03:49:50.434 -07 000000438 INF: Y Motor: Moving 1341 steps-18 17-03-18 03:49:50.444 -07 000000474 INF: FPGA: Xmit ZDACW 29917\n [Z Motor] 17-03-18 03:49:50.474 -07 000000501 INF: FPGA: Recv ZDACW 17-03-18 03:49:50.484 -07 000000474 INF: FPGA: 'ZDACW 29917' command took 36 ms to send, 0 ms to get response, and 60 ms overall 17-03-18 03:49:50.484 -07 000000438 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor] 17-03-18 03:49:50.494 -07 000000474 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-18 03:49:50.504 -07 000000382 INF: FPGA: Recv ZDACR 29917 17-03-18 03:49:50.514 -07 000000474 INF: FPGA: 'ZDACR' command took 16 ms to send, 0 ms to get response, and 29 ms overall 17-03-18 03:49:50.514 -07 000000474 INF: Z Motor: MoveAbsStepped took 90 ms (did NOT wait for settling yet)) 17-03-18 03:49:50.624 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 2165554656, 0x0, 418435064) end. Duration was 394 ms. 17-03-18 03:49:50.624 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms. 17-03-18 03:49:50.624 -07 000000455 INF: Camera: CopyActivePixFullImage start. 17-03-18 03:49:50.624 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 396 ms. 17-03-18 03:49:50.624 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms. 17-03-18 03:49:50.624 -07 000000480 INF: Camera: CopyActivePixFullImage start. 17-03-18 03:49:50.624 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-18 03:49:50.624 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-18 03:49:50.624 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms. 17-03-18 03:49:50.634 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms. 17-03-18 03:49:50.634 -07 000000474 INF: FPGA: Recv FOCMRRFOC 17-03-18 03:49:50.634 -07 000000569 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 193 ms to get response, and 213 ms overall 17-03-18 03:49:50.854 -07 000000480 INF: FPGA: Recv YMVTILE 17-03-18 03:49:50.854 -07 000000438 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 422 ms overall 17-03-18 03:49:50.904 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 03:49:50.904 -07 000000569 INF: FPGA: Recv YRDPOS 136272 17-03-18 03:49:50.914 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall 17-03-18 03:49:50.914 -07 000000438 INF: Y Motor: Encoder = 136272 = motor step 106462.5 = 66.5391 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 03:49:50.914 -07 000000438 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm) 17-03-18 03:49:50.914 -07 000000438 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 422 ms, distance = 0.839 mm, average velocity = 1.988 mm/sec 17-03-18 03:49:51.614 -07 000000382 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-18 03:49:51.614 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 116. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1683, R2=1752, Total=3435. Warn if over 250 bubbles per interval. 17-03-18 03:49:51.864 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 03:49:51.864 -07 000000455 INF: FPGA: Recv YRDPOS 136272 17-03-18 03:49:51.874 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-18 03:49:51.874 -07 000000438 INF: Y Motor: Encoder = 136272 = motor step 106462.5 = 66.5391 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 03:49:51.904 -07 000000438 INF: Y Motor: After move to 66.552605, error = -0.013542, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm 17-03-18 03:49:51.904 -07 000000438 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm) 17-03-18 03:49:51.904 -07 000000438 INF: Y Motor: Moved to 66.5391 after 1482 ms (table move) 17-03-18 03:49:51.904 -07 000000444 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136951 mm (DAC = 29917) 17-03-18 03:49:51.904 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:49:51.904 -07 000000480 INF: FPGA: Recv ZSGSRD 30606 17-03-18 03:49:51.914 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall 17-03-18 03:49:51.914 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:49:51.914 -07 000000382 INF: FPGA: Recv ZSGSRD 30606 17-03-18 03:49:51.924 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:51.924 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:49:51.924 -07 000000455 INF: FPGA: Recv ZSGSRD 30612 17-03-18 03:49:51.934 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:51.934 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:49:51.934 -07 000000569 INF: FPGA: Recv ZSGSRD 30616 17-03-18 03:49:51.944 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:51.944 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:49:51.944 -07 000000474 INF: FPGA: Recv ZSGSRD 30607 17-03-18 03:49:51.954 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:51.954 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:49:51.954 -07 000000455 INF: FPGA: Recv ZSGSRD 30606 17-03-18 03:49:51.964 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:51.964 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:49:51.964 -07 000000438 INF: FPGA: Recv ZSGSRD 30613 17-03-18 03:49:51.974 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:51.974 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:49:51.974 -07 000000382 INF: FPGA: Recv ZSGSRD 30603 17-03-18 03:49:51.984 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:51.984 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:49:51.984 -07 000000438 INF: FPGA: Recv ZSGSRD 30606 17-03-18 03:49:51.994 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:51.994 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:49:51.994 -07 000000501 INF: FPGA: Recv ZSGSRD 30607 17-03-18 03:49:52.004 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:52.004 -07 000000444 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-18 03:49:52.004 -07 000000480 INF: FPGA: Recv ZPIEZORD 26434 17-03-18 03:49:52.014 -07 000000444 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:52.014 -07 000000444 INF: Z Motor: Piezo is near 36.5 V (nominally 0 to 100 V), expect near 45.7 V, since DAC is at 4.565 V. Piezo Error = -9.2 V. 17-03-18 03:49:52.014 -07 000000444 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.0 um, Read 10 ADC samples: Avg = 30608 (-136.2 uncal um), Error = 0.8 uncal um, Median = 30606 (-136.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 30603 (-136.1 uncal um), Max = 30616 (-136.2 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um) 17-03-18 03:49:52.014 -07 000000444 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30608, posNoise = 8, negNoise = 5 17-03-18 03:49:52.014 -07 000000444 INF: Z Motor: After move to -0.136951, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-18 03:49:52.014 -07 000000444 INF: Z Motor: Settle wait time = 1485 ms, measure time = 106 ms (allowed 150 ms), total time = 1591 ms 17-03-18 03:49:52.014 -07 000000444 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms 17-03-18 03:49:52.064 -07 000000444 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1646 ms 17-03-18 03:49:52.064 -07 000000444 INF: Y Motor: Restored settling times back to 3000 or 1100 ms 17-03-18 03:49:52.064 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-18 03:49:52.064 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-18 03:49:52.064 -07 000000438 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-18 03:49:52.064 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger start. 17-03-18 03:49:52.064 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-18 03:49:52.064 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-18 03:49:52.064 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-18 03:49:52.064 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start. 17-03-18 03:49:52.074 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms. 17-03-18 03:49:52.074 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start. 17-03-18 03:49:52.084 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms. 17-03-18 03:49:52.084 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms. 17-03-18 03:49:52.084 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera] 17-03-18 03:49:52.134 -07 000000569 INF: FPGA: Recv @CAMSNAP turning led on 41 17-03-18 03:49:52.434 -07 000000501 INF: FPGA: Recv @CAMSNAP img rdy 341 17-03-18 03:49:52.434 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 341 17-03-18 03:49:52.434 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start. 17-03-18 03:49:52.434 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2200976920, 0x0, 559484976) start. 17-03-18 03:49:52.474 -07 000000382 INF: FPGA: Recv @CAMSNAP 380 17-03-18 03:49:52.474 -07 000000569 INF: FPGA: Recv CAMSNAP 17-03-18 03:49:52.474 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 381 ms to get response, and 387 ms overall 17-03-18 03:49:52.564 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2200976920, 0x0, 559484976) end. Duration was 125 ms. 17-03-18 03:49:52.564 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-18 03:49:52.564 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms. 17-03-18 03:49:52.564 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms. 17-03-18 03:49:52.574 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-18 03:49:52.574 -07 000000474 INF: Autofocus start 17-03-18 03:49:52.574 -07 000000474 INF: MeasureProfile start 17-03-18 03:49:52.574 -07 000000480 INF: FPGA: Recv FOCMRRCUR 17-03-18 03:49:52.584 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall 17-03-18 03:49:52.584 -07 000000569 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror] 17-03-18 03:49:52.584 -07 000000474 INF: MeasureProfile done 17-03-18 03:49:52.584 -07 000000474 INF: X=0 Z correction [um]=-0.02394831 17-03-18 03:49:52.584 -07 000000474 INF: Autofocus finished 17-03-18 03:49:52.784 -07 000000438 INF: FPGA: Recv FOCMRRIMG 17-03-18 03:49:52.784 -07 000000569 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall 17-03-18 03:49:52.784 -07 000000610 INF: ------------ Scan Snapping tile 9 at Y-position 66.5390625, Z-position -0.136955637246154. ---------- 17-03-18 03:49:52.784 -07 000000610 INF: Cycle 117 Tile 9 Exposure Settings A 411 G 198 T 198 C 411 17-03-18 03:49:52.794 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28424, sync = True, waitForSettling = True) 17-03-18 03:49:52.794 -07 000000610 INF: Z Motor: Moving to -0.130117 mm, started at -0.136956 mm, distance = 6.84 um 17-03-18 03:49:52.794 -07 000000610 INF: FPGA: Xmit ZDACW 28424\n [Z Motor] 17-03-18 03:49:52.794 -07 000000455 INF: FPGA: Recv ZDACW 17-03-18 03:49:52.804 -07 000000610 INF: FPGA: 'ZDACW 28424' command took 0 ms to send, 0 ms to get response, and 8 ms overall 17-03-18 03:49:52.804 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-18 03:49:52.804 -07 000000501 INF: FPGA: Recv ZDACR 28424 17-03-18 03:49:52.814 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:52.814 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-18 03:49:52.964 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:49:52.964 -07 000000455 INF: FPGA: Recv ZSGSRD 29537 17-03-18 03:49:52.974 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:52.974 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:49:52.974 -07 000000438 INF: FPGA: Recv ZSGSRD 29551 17-03-18 03:49:52.984 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:52.984 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:49:52.984 -07 000000382 INF: FPGA: Recv ZSGSRD 29547 17-03-18 03:49:52.994 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:52.994 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:49:52.994 -07 000000438 INF: FPGA: Recv ZSGSRD 29542 17-03-18 03:49:53.004 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:53.004 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:49:53.004 -07 000000382 INF: FPGA: Recv ZSGSRD 29543 17-03-18 03:49:53.014 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:53.014 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:49:53.014 -07 000000438 INF: FPGA: Recv ZSGSRD 29544 17-03-18 03:49:53.024 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:53.024 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:49:53.024 -07 000000474 INF: FPGA: Recv ZSGSRD 29550 17-03-18 03:49:53.034 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:53.034 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:49:53.034 -07 000000501 INF: FPGA: Recv ZSGSRD 29547 17-03-18 03:49:53.044 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:53.044 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:49:53.044 -07 000000382 INF: FPGA: Recv ZSGSRD 29545 17-03-18 03:49:53.054 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:53.054 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:49:53.054 -07 000000501 INF: FPGA: Recv ZSGSRD 29544 17-03-18 03:49:53.064 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:53.064 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-18 03:49:53.064 -07 000000382 INF: FPGA: Recv ZPIEZORD 25004 17-03-18 03:49:53.074 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:53.074 -07 000000610 INF: Z Motor: Piezo is near 33.4 V (nominally 0 to 100 V), expect near 43.4 V, since DAC is at 4.337 V. Piezo Error = -10.0 V. 17-03-18 03:49:53.074 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.1 um, Read 10 ADC samples: Avg = 29545 (-129.3 uncal um), Error = 0.8 uncal um, Median = 29544 (-129.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 29537 (-129.3 uncal um), Max = 29551 (-129.4 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um) 17-03-18 03:49:53.074 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29545, posNoise = 6, negNoise = 8 17-03-18 03:49:53.074 -07 000000610 INF: Z Motor: After move to -0.130117, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-18 03:49:53.074 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms) 17-03-18 03:49:53.074 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-18 03:49:53.074 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-18 03:49:53.074 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-18 03:49:53.074 -07 000000438 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-18 03:49:53.074 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start. 17-03-18 03:49:53.074 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-18 03:49:53.074 -07 000000444 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start. 17-03-18 03:49:53.074 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074704) start. 17-03-18 03:49:53.074 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-18 03:49:53.074 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start. 17-03-18 03:49:53.074 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms. 17-03-18 03:49:53.074 -07 000000444 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start. 17-03-18 03:49:53.084 -07 000000444 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms. 17-03-18 03:49:53.084 -07 000000444 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start. 17-03-18 03:49:53.084 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms. 17-03-18 03:49:53.084 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start. 17-03-18 03:49:53.094 -07 000000444 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms. 17-03-18 03:49:53.094 -07 000000444 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms. 17-03-18 03:49:53.094 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms. 17-03-18 03:49:53.094 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms. 17-03-18 03:49:53.094 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 411 411 198 198 28601 150\n [Camera] 17-03-18 03:49:53.294 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning red on 192 17-03-18 03:49:53.704 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 603 17-03-18 03:49:53.704 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 603 17-03-18 03:49:53.704 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-18 03:49:53.704 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-18 03:49:53.704 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start. 17-03-18 03:49:53.704 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 603 17-03-18 03:49:53.704 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 603 17-03-18 03:49:53.704 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-18 03:49:53.704 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-18 03:49:53.704 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start. 17-03-18 03:49:53.894 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28601 796 17-03-18 03:49:54.014 -07 000000438 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 117, FrontChillerTemperature: 3.996267, 17-03-18 03:49:54.044 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP turning grn on 946 17-03-18 03:49:54.084 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 379 ms. 17-03-18 03:49:54.084 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms. 17-03-18 03:49:54.084 -07 000000474 INF: Camera: CopyActivePixFullImage start. 17-03-18 03:49:54.084 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-18 03:49:54.084 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms. 17-03-18 03:49:54.084 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 379 ms. 17-03-18 03:49:54.084 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms. 17-03-18 03:49:54.084 -07 000000480 INF: Camera: CopyActivePixFullImage start. 17-03-18 03:49:54.094 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-18 03:49:54.104 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms. 17-03-18 03:49:54.244 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1144 17-03-18 03:49:54.244 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1144 17-03-18 03:49:54.244 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-18 03:49:54.244 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-18 03:49:54.244 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start. 17-03-18 03:49:54.244 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1144 17-03-18 03:49:54.244 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1144 17-03-18 03:49:54.244 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-18 03:49:54.244 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-18 03:49:54.244 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start. 17-03-18 03:49:54.434 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP 1337 17-03-18 03:49:54.434 -07 000000438 INF: FPGA: Recv CAMDBLSNAP 17-03-18 03:49:54.434 -07 000000610 INF: FPGA: 'CAMDBLSNAP 411 411 198 198 28601 150' command took 2 ms to send, 1337 ms to get response, and 1343 ms overall 17-03-18 03:49:54.434 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503 17-03-18 03:49:54.434 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 10 at Y-position 66.5390625, Z-Position -0.130126699739463. ------ 17-03-18 03:49:54.444 -07 000000382 INF: Y Motor: MoveYZ optimized starting. Moving Y to 67.3826 mm, moving Z to -0.13704 mm 17-03-18 03:49:54.444 -07 000000382 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move 17-03-18 03:49:54.444 -07 000000474 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-18 03:49:54.444 -07 000000501 INF: Y Motor: Entering MoveAbsStepped (target = 107812 steps, sync = True, waitForSettling = True) 17-03-18 03:49:54.444 -07 000000501 INF: Y Motor: Moving to 67.3826 mm, started at 66.5391 mm, delta = 0.8435 mm 17-03-18 03:49:54.444 -07 000000467 INF: Z Motor: Entering MoveAbsStepped (DAC = 29937, sync = True, waitForSettling = False) 17-03-18 03:49:54.444 -07 000000467 INF: Z Motor: Moving to -0.137043 mm, started at -0.130127 mm, distance = -6.92 um 17-03-18 03:49:54.444 -07 000000455 INF: FPGA: Recv FOCMRRCUR 17-03-18 03:49:54.454 -07 000000474 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall 17-03-18 03:49:54.454 -07 000000467 INF: FPGA: Xmit ZDACW 29937\n [Z Motor] 17-03-18 03:49:54.454 -07 000000606 INF: FPGA: Recv ZDACW 17-03-18 03:49:54.464 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 03:49:54.464 -07 000000467 INF: FPGA: 'ZDACW 29937' command took 0 ms to send, 0 ms to get response, and 12 ms overall 17-03-18 03:49:54.464 -07 000000606 INF: FPGA: Recv YRDPOS 136273 17-03-18 03:49:54.474 -07 000000474 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror] 17-03-18 03:49:54.474 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 22 ms overall 17-03-18 03:49:54.474 -07 000000501 INF: Y Motor: Encoder = 136273 = motor step 106463.3 = 66.5396 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 03:49:54.474 -07 000000501 INF: Y Motor: Last commanded position = 66.5526 mm (106484.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True 17-03-18 03:49:54.474 -07 000000501 INF: Y Motor: Moving 1349 steps-28 17-03-18 03:49:54.484 -07 000000467 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-18 03:49:54.484 -07 000000455 INF: FPGA: Recv ZDACR 29937 17-03-18 03:49:54.494 -07 000000501 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor] 17-03-18 03:49:54.494 -07 000000467 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall 17-03-18 03:49:54.494 -07 000000467 INF: Z Motor: MoveAbsStepped took 42 ms (did NOT wait for settling yet)) 17-03-18 03:49:54.634 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 387 ms. 17-03-18 03:49:54.634 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 387 ms. 17-03-18 03:49:54.634 -07 000000480 INF: Camera: CopyActivePixFullImage start. 17-03-18 03:49:54.634 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 390 ms. 17-03-18 03:49:54.634 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms. 17-03-18 03:49:54.634 -07 000000444 INF: Camera: CopyActivePixFullImage start. 17-03-18 03:49:54.644 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-18 03:49:54.644 -07 000000444 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms. 17-03-18 03:49:54.644 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 399 ms. 17-03-18 03:49:54.644 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 398 ms. 17-03-18 03:49:54.674 -07 000000444 INF: FPGA: Recv FOCMRRFOC 17-03-18 03:49:54.674 -07 000000474 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall 17-03-18 03:49:54.864 -07 000000606 INF: FPGA: Recv YMVTILE 17-03-18 03:49:54.864 -07 000000501 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 393 ms overall 17-03-18 03:49:54.914 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 03:49:54.914 -07 000000474 INF: FPGA: Recv YRDPOS 137978 17-03-18 03:49:54.924 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall 17-03-18 03:49:54.924 -07 000000501 INF: Y Motor: Encoder = 137978 = motor step 107795.3 = 67.3721 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 03:49:54.924 -07 000000501 INF: Y Motor: Position error before settling (table move) = -22 encoder counts (-0.011 mm) 17-03-18 03:49:54.924 -07 000000501 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 393 ms, distance = 0.844 mm, average velocity = 2.146 mm/sec 17-03-18 03:49:55.874 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 03:49:55.874 -07 000000438 INF: FPGA: Recv YRDPOS 137978 17-03-18 03:49:55.884 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-18 03:49:55.884 -07 000000501 INF: Y Motor: Encoder = 137978 = motor step 107795.3 = 67.3721 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 03:49:55.904 -07 000000501 INF: Y Motor: After move to 67.382607, error = -0.010536, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm 17-03-18 03:49:55.904 -07 000000501 INF: Y Motor: Position error after settling (table move) = -22 encoder counts (-0.011 mm), Delta during settling = 0 counts (0.000 mm) 17-03-18 03:49:55.904 -07 000000501 INF: Y Motor: Moved to 67.3721 after 1462 ms (table move) 17-03-18 03:49:55.914 -07 000000382 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137043 mm (DAC = 29937) 17-03-18 03:49:55.914 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:49:55.914 -07 000000569 INF: FPGA: Recv ZSGSRD 30620 17-03-18 03:49:55.924 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall 17-03-18 03:49:55.924 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:49:55.924 -07 000000474 INF: FPGA: Recv ZSGSRD 30623 17-03-18 03:49:55.934 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:55.934 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:49:55.934 -07 000000501 INF: FPGA: Recv ZSGSRD 30628 17-03-18 03:49:55.944 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:55.944 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:49:55.944 -07 000000579 INF: FPGA: Recv ZSGSRD 30624 17-03-18 03:49:55.954 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:55.954 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:49:55.954 -07 000000579 INF: FPGA: Recv ZSGSRD 30623 17-03-18 03:49:55.964 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:55.964 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:49:55.964 -07 000000569 INF: FPGA: Recv ZSGSRD 30623 17-03-18 03:49:55.974 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:55.974 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:49:55.974 -07 000000501 INF: FPGA: Recv ZSGSRD 30622 17-03-18 03:49:55.984 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:55.984 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:49:55.984 -07 000000474 INF: FPGA: Recv ZSGSRD 30620 17-03-18 03:49:55.994 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:55.994 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:49:55.994 -07 000000579 INF: FPGA: Recv ZSGSRD 30618 17-03-18 03:49:56.004 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:56.004 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:49:56.004 -07 000000474 INF: FPGA: Recv ZSGSRD 30624 17-03-18 03:49:56.014 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:56.014 -07 000000382 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-18 03:49:56.014 -07 000000606 INF: FPGA: Recv ZPIEZORD 26424 17-03-18 03:49:56.024 -07 000000382 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:56.024 -07 000000382 INF: Z Motor: Piezo is near 36.4 V (nominally 0 to 100 V), expect near 45.7 V, since DAC is at 4.568 V. Piezo Error = -9.2 V. 17-03-18 03:49:56.024 -07 000000382 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.0 um, Read 10 ADC samples: Avg = 30622 (-136.2 uncal um), Error = 0.8 uncal um, Median = 30623 (-136.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 30618 (-136.2 uncal um), Max = 30628 (-136.3 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um) 17-03-18 03:49:56.024 -07 000000382 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30622, posNoise = 6, negNoise = 4 17-03-18 03:49:56.024 -07 000000382 INF: Z Motor: After move to -0.137043, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-18 03:49:56.024 -07 000000382 INF: Z Motor: Settle wait time = 1467 ms, measure time = 106 ms (allowed 150 ms), total time = 1573 ms 17-03-18 03:49:56.024 -07 000000382 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms 17-03-18 03:49:56.074 -07 000000382 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1625 ms 17-03-18 03:49:56.074 -07 000000382 INF: Y Motor: Restored settling times back to 3000 or 1100 ms 17-03-18 03:49:56.084 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-18 03:49:56.084 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-18 03:49:56.094 -07 000000579 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-18 03:49:56.094 -07 000000569 INF: Disarm and arm camera sensor 0: ROITrigger start. 17-03-18 03:49:56.094 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-18 03:49:56.094 -07 000000474 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-18 03:49:56.094 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms. 17-03-18 03:49:56.094 -07 000000569 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start. 17-03-18 03:49:56.094 -07 000000569 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms. 17-03-18 03:49:56.094 -07 000000569 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start. 17-03-18 03:49:56.104 -07 000000569 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 8 ms. 17-03-18 03:49:56.104 -07 000000569 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 13 ms. 17-03-18 03:49:56.104 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera] 17-03-18 03:49:56.154 -07 000000606 INF: FPGA: Recv @CAMSNAP turning led on 40 17-03-18 03:49:56.454 -07 000000382 INF: FPGA: Recv @CAMSNAP img rdy 340 17-03-18 03:49:56.454 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340 17-03-18 03:49:56.454 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start. 17-03-18 03:49:56.454 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2151893096, 0x0, 559484976) start. 17-03-18 03:49:56.494 -07 000000606 INF: FPGA: Recv @CAMSNAP 380 17-03-18 03:49:56.494 -07 000000501 INF: FPGA: Recv CAMSNAP 17-03-18 03:49:56.494 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 382 ms to get response, and 384 ms overall 17-03-18 03:49:56.574 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2151893096, 0x0, 559484976) end. Duration was 115 ms. 17-03-18 03:49:56.574 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-18 03:49:56.574 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms. 17-03-18 03:49:56.574 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms. 17-03-18 03:49:56.594 -07 000000382 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-18 03:49:56.594 -07 000000569 INF: Autofocus start 17-03-18 03:49:56.594 -07 000000569 INF: MeasureProfile start 17-03-18 03:49:56.594 -07 000000501 INF: FPGA: Recv FOCMRRCUR 17-03-18 03:49:56.604 -07 000000382 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall 17-03-18 03:49:56.604 -07 000000382 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror] 17-03-18 03:49:56.604 -07 000000569 INF: MeasureProfile done 17-03-18 03:49:56.604 -07 000000569 INF: X=0 Z correction [um]=-0.02394831 17-03-18 03:49:56.604 -07 000000569 INF: Autofocus finished 17-03-18 03:49:56.614 -07 000000606 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-18 03:49:56.614 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 116. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1683, R2=1752, Total=3435. Warn if over 250 bubbles per interval. 17-03-18 03:49:56.804 -07 000000501 INF: FPGA: Recv FOCMRRIMG 17-03-18 03:49:56.804 -07 000000382 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall 17-03-18 03:49:56.804 -07 000000610 INF: ------------ Scan Snapping tile 10 at Y-position 67.3720703125, Z-position -0.137045576216139. ---------- 17-03-18 03:49:56.804 -07 000000610 INF: Cycle 117 Tile 10 Exposure Settings A 411 G 198 T 198 C 411 17-03-18 03:49:56.814 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28444, sync = True, waitForSettling = True) 17-03-18 03:49:56.814 -07 000000610 INF: Z Motor: Moving to -0.130208 mm, started at -0.137046 mm, distance = 6.84 um 17-03-18 03:49:56.814 -07 000000610 INF: FPGA: Xmit ZDACW 28444\n [Z Motor] 17-03-18 03:49:56.814 -07 000000569 INF: FPGA: Recv ZDACW 17-03-18 03:49:56.824 -07 000000610 INF: FPGA: 'ZDACW 28444' command took 0 ms to send, 0 ms to get response, and 7 ms overall 17-03-18 03:49:56.824 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-18 03:49:56.824 -07 000000501 INF: FPGA: Recv ZDACR 28444 17-03-18 03:49:56.834 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:56.834 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-18 03:49:56.984 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:49:56.984 -07 000000579 INF: FPGA: Recv ZSGSRD 29564 17-03-18 03:49:56.994 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:56.994 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:49:56.994 -07 000000569 INF: FPGA: Recv ZSGSRD 29563 17-03-18 03:49:57.004 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:57.004 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:49:57.004 -07 000000579 INF: FPGA: Recv ZSGSRD 29556 17-03-18 03:49:57.014 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:57.014 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:49:57.014 -07 000000569 INF: FPGA: Recv ZSGSRD 29557 17-03-18 03:49:57.024 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:57.024 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:49:57.024 -07 000000579 INF: FPGA: Recv ZSGSRD 29557 17-03-18 03:49:57.034 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:57.034 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:49:57.034 -07 000000382 INF: FPGA: Recv ZSGSRD 29558 17-03-18 03:49:57.044 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:57.044 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:49:57.044 -07 000000579 INF: FPGA: Recv ZSGSRD 29554 17-03-18 03:49:57.054 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:57.054 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:49:57.054 -07 000000569 INF: FPGA: Recv ZSGSRD 29558 17-03-18 03:49:57.064 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:57.064 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:49:57.064 -07 000000474 INF: FPGA: Recv ZSGSRD 29567 17-03-18 03:49:57.074 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:57.074 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:49:57.074 -07 000000569 INF: FPGA: Recv ZSGSRD 29556 17-03-18 03:49:57.084 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:57.084 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-18 03:49:57.084 -07 000000382 INF: FPGA: Recv ZPIEZORD 25025 17-03-18 03:49:57.094 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:57.094 -07 000000610 INF: Z Motor: Piezo is near 33.5 V (nominally 0 to 100 V), expect near 43.4 V, since DAC is at 4.340 V. Piezo Error = -9.9 V. 17-03-18 03:49:57.094 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.2 um, Read 10 ADC samples: Avg = 29559 (-129.4 uncal um), Error = 0.8 uncal um, Median = 29558 (-129.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 29554 (-129.4 uncal um), Max = 29567 (-129.5 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um) 17-03-18 03:49:57.094 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29559, posNoise = 8, negNoise = 5 17-03-18 03:49:57.094 -07 000000610 INF: Z Motor: After move to -0.130208, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-18 03:49:57.094 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms) 17-03-18 03:49:57.094 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-18 03:49:57.094 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-18 03:49:57.094 -07 000000579 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-18 03:49:57.094 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start. 17-03-18 03:49:57.094 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-18 03:49:57.094 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-18 03:49:57.094 -07 000000474 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start. 17-03-18 03:49:57.094 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074704) start. 17-03-18 03:49:57.094 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-18 03:49:57.094 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start. 17-03-18 03:49:57.094 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms. 17-03-18 03:49:57.094 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start. 17-03-18 03:49:57.104 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms. 17-03-18 03:49:57.104 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start. 17-03-18 03:49:57.104 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms. 17-03-18 03:49:57.104 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start. 17-03-18 03:49:57.114 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms. 17-03-18 03:49:57.114 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms. 17-03-18 03:49:57.114 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms. 17-03-18 03:49:57.114 -07 000000474 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms. 17-03-18 03:49:57.114 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 411 411 198 198 28621 150\n [Camera] 17-03-18 03:49:57.314 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP turning red on 192 17-03-18 03:49:57.724 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 603 17-03-18 03:49:57.724 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 603 17-03-18 03:49:57.724 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 603 17-03-18 03:49:57.724 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-18 03:49:57.724 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 603 17-03-18 03:49:57.724 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-18 03:49:57.724 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) start. 17-03-18 03:49:57.724 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-18 03:49:57.724 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-18 03:49:57.724 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start. 17-03-18 03:49:57.914 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28621 796 17-03-18 03:49:58.064 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning grn on 946 17-03-18 03:49:58.114 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 381 ms. 17-03-18 03:49:58.114 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms. 17-03-18 03:49:58.114 -07 000000012 INF: Camera: CopyActivePixFullImage start. 17-03-18 03:49:58.114 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-18 03:49:58.114 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) end. Duration was 388 ms. 17-03-18 03:49:58.114 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 388 ms. 17-03-18 03:49:58.114 -07 000000474 INF: Camera: CopyActivePixFullImage start. 17-03-18 03:49:58.124 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-18 03:49:58.124 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 393 ms. 17-03-18 03:49:58.124 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms. 17-03-18 03:49:58.264 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1144 17-03-18 03:49:58.264 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1144 17-03-18 03:49:58.264 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-18 03:49:58.264 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-18 03:49:58.264 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) start. 17-03-18 03:49:58.264 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1144 17-03-18 03:49:58.264 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1144 17-03-18 03:49:58.274 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-18 03:49:58.274 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-18 03:49:58.274 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) start. 17-03-18 03:49:58.454 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP 1336 17-03-18 03:49:58.454 -07 000000455 INF: FPGA: Recv CAMDBLSNAP 17-03-18 03:49:58.454 -07 000000610 INF: FPGA: 'CAMDBLSNAP 411 411 198 198 28621 150' command took 2 ms to send, 1338 ms to get response, and 1344 ms overall 17-03-18 03:49:58.464 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503 17-03-18 03:49:58.464 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 11 at Y-position 67.3720703125, Z-Position -0.130216638709447. ------ 17-03-18 03:49:58.464 -07 000000569 INF: Y Motor: MoveYZ optimized starting. Moving Y to 68.2126 mm, moving Z to -0.13649 mm 17-03-18 03:49:58.464 -07 000000569 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move 17-03-18 03:49:58.464 -07 000000474 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-18 03:49:58.474 -07 000000012 INF: Y Motor: Entering MoveAbsStepped (target = 109140 steps, sync = True, waitForSettling = True) 17-03-18 03:49:58.474 -07 000000012 INF: Y Motor: Moving to 68.2126 mm, started at 67.3721 mm, delta = 0.8405 mm 17-03-18 03:49:58.474 -07 000000579 INF: FPGA: Recv FOCMRRCUR 17-03-18 03:49:58.474 -07 000000474 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 4 ms overall 17-03-18 03:49:58.474 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 03:49:58.474 -07 000000626 INF: Z Motor: Entering MoveAbsStepped (DAC = 29816, sync = True, waitForSettling = False) 17-03-18 03:49:58.474 -07 000000626 INF: Z Motor: Moving to -0.136489 mm, started at -0.130217 mm, distance = -6.27 um 17-03-18 03:49:58.474 -07 000000606 INF: FPGA: Recv YRDPOS 137978 17-03-18 03:49:58.484 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall 17-03-18 03:49:58.484 -07 000000012 INF: Y Motor: Encoder = 137978 = motor step 107795.3 = 67.3721 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 03:49:58.484 -07 000000012 INF: Y Motor: Last commanded position = 67.3826 mm (107812.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True 17-03-18 03:49:58.484 -07 000000012 INF: Y Motor: Moving 1345 steps-22 17-03-18 03:49:58.484 -07 000000626 INF: FPGA: Xmit ZDACW 29816\n [Z Motor] 17-03-18 03:49:58.484 -07 000000606 INF: FPGA: Recv ZDACW 17-03-18 03:49:58.494 -07 000000474 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror] 17-03-18 03:49:58.494 -07 000000626 INF: FPGA: 'ZDACW 29816' command took 1 ms to send, 0 ms to get response, and 17 ms overall 17-03-18 03:49:58.504 -07 000000012 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor] 17-03-18 03:49:58.514 -07 000000626 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-18 03:49:58.514 -07 000000501 INF: FPGA: Recv ZDACR 29816 17-03-18 03:49:58.524 -07 000000626 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall 17-03-18 03:49:58.524 -07 000000626 INF: Z Motor: MoveAbsStepped took 47 ms (did NOT wait for settling yet)) 17-03-18 03:49:58.664 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) end. Duration was 394 ms. 17-03-18 03:49:58.664 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms. 17-03-18 03:49:58.664 -07 000000480 INF: Camera: CopyActivePixFullImage start. 17-03-18 03:49:58.664 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) end. Duration was 395 ms. 17-03-18 03:49:58.664 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms. 17-03-18 03:49:58.664 -07 000000461 INF: Camera: CopyActivePixFullImage start. 17-03-18 03:49:58.664 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-18 03:49:58.674 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms. 17-03-18 03:49:58.674 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms. 17-03-18 03:49:58.674 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 406 ms. 17-03-18 03:49:58.694 -07 000000626 INF: FPGA: Recv FOCMRRFOC 17-03-18 03:49:58.694 -07 000000474 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 220 ms overall 17-03-18 03:49:58.874 -07 000000626 INF: FPGA: Recv YMVTILE 17-03-18 03:49:58.874 -07 000000012 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall 17-03-18 03:49:58.924 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 03:49:58.924 -07 000000474 INF: FPGA: Recv YRDPOS 139684 17-03-18 03:49:58.934 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall 17-03-18 03:49:58.934 -07 000000012 INF: Y Motor: Encoder = 139684 = motor step 109128.1 = 68.2051 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 03:49:58.934 -07 000000012 INF: Y Motor: Position error before settling (table move) = -15 encoder counts (-0.007 mm) 17-03-18 03:49:58.934 -07 000000012 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.841 mm, average velocity = 2.117 mm/sec 17-03-18 03:49:59.374 -07 000000480 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 117, FrontChillerTemperature: 4.005817, 17-03-18 03:49:59.884 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 03:49:59.884 -07 000000501 INF: FPGA: Recv YRDPOS 139685 17-03-18 03:49:59.894 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:49:59.894 -07 000000012 INF: Y Motor: Encoder = 139685 = motor step 109128.9 = 68.2056 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 03:49:59.914 -07 000000012 INF: Y Motor: After move to 68.212608, error = -0.007042, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm 17-03-18 03:49:59.914 -07 000000012 INF: Y Motor: Position error after settling (table move) = -14 encoder counts (-0.007 mm), Delta during settling = 1 counts (0.000 mm) 17-03-18 03:49:59.914 -07 000000012 INF: Y Motor: Moved to 68.2056 after 1447 ms (table move) 17-03-18 03:49:59.924 -07 000000569 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136489 mm (DAC = 29816) 17-03-18 03:49:59.924 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:49:59.924 -07 000000382 INF: FPGA: Recv ZSGSRD 30541 17-03-18 03:49:59.934 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall 17-03-18 03:49:59.944 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:49:59.944 -07 000000455 INF: FPGA: Recv ZSGSRD 30535 17-03-18 03:49:59.954 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall 17-03-18 03:49:59.964 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:49:59.964 -07 000000012 INF: FPGA: Recv ZSGSRD 30533 17-03-18 03:49:59.974 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall 17-03-18 03:49:59.984 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:49:59.984 -07 000000382 INF: FPGA: Recv ZSGSRD 30532 17-03-18 03:49:59.994 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall 17-03-18 03:50:00.014 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:50:00.014 -07 000000561 INF: FPGA: Recv ZSGSRD 30534 17-03-18 03:50:00.024 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall 17-03-18 03:50:00.024 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:50:00.024 -07 000000626 INF: FPGA: Recv ZSGSRD 30539 17-03-18 03:50:00.034 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:50:00.034 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:50:00.034 -07 000000480 INF: FPGA: Recv ZSGSRD 30533 17-03-18 03:50:00.044 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:50:00.044 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:50:00.044 -07 000000012 INF: FPGA: Recv ZSGSRD 30529 17-03-18 03:50:00.054 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:50:00.054 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:50:00.054 -07 000000474 INF: FPGA: Recv ZSGSRD 30534 17-03-18 03:50:00.064 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:50:00.064 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:50:00.064 -07 000000474 INF: FPGA: Recv ZSGSRD 30530 17-03-18 03:50:00.074 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:50:00.074 -07 000000569 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-18 03:50:00.074 -07 000000501 INF: FPGA: Recv ZPIEZORD 26322 17-03-18 03:50:00.084 -07 000000569 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:50:00.084 -07 000000569 INF: Z Motor: Piezo is near 36.2 V (nominally 0 to 100 V), expect near 45.5 V, since DAC is at 4.550 V. Piezo Error = -9.3 V. 17-03-18 03:50:00.084 -07 000000569 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.5 um, Read 10 ADC samples: Avg = 30534 (-135.7 uncal um), Error = 0.8 uncal um, Median = 30534 (-135.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 30529 (-135.7 uncal um), Max = 30541 (-135.7 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um) 17-03-18 03:50:00.084 -07 000000569 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30534, posNoise = 7, negNoise = 5 17-03-18 03:50:00.084 -07 000000569 INF: Z Motor: After move to -0.136489, error = 0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-18 03:50:00.084 -07 000000569 INF: Z Motor: Settle wait time = 1451 ms, measure time = 156 ms (allowed 150 ms), total time = 1607 ms 17-03-18 03:50:00.084 -07 000000569 INF: Z Motor: Warning: Actual position measuring time = 156 ms, longer than max expected time of 150 ms 17-03-18 03:50:00.084 -07 000000569 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1612 ms 17-03-18 03:50:00.084 -07 000000569 INF: Y Motor: Restored settling times back to 3000 or 1100 ms 17-03-18 03:50:00.084 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-18 03:50:00.084 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-18 03:50:00.084 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-18 03:50:00.084 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-18 03:50:00.084 -07 000000474 INF: Disarm and arm camera sensor 0: ROITrigger start. 17-03-18 03:50:00.084 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-18 03:50:00.084 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms. 17-03-18 03:50:00.084 -07 000000474 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start. 17-03-18 03:50:00.094 -07 000000474 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms. 17-03-18 03:50:00.094 -07 000000474 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start. 17-03-18 03:50:00.094 -07 000000474 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms. 17-03-18 03:50:00.094 -07 000000474 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms. 17-03-18 03:50:00.104 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera] 17-03-18 03:50:00.144 -07 000000569 INF: FPGA: Recv @CAMSNAP turning led on 40 17-03-18 03:50:00.444 -07 000000569 INF: FPGA: Recv @CAMSNAP img rdy 340 17-03-18 03:50:00.444 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340 17-03-18 03:50:00.444 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start. 17-03-18 03:50:00.444 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 682359904, 0x0, 559484976) start. 17-03-18 03:50:00.484 -07 000000501 INF: FPGA: Recv @CAMSNAP 380 17-03-18 03:50:00.484 -07 000000474 INF: FPGA: Recv CAMSNAP 17-03-18 03:50:00.484 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 375 ms to get response, and 384 ms overall 17-03-18 03:50:00.564 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 682359904, 0x0, 559484976) end. Duration was 114 ms. 17-03-18 03:50:00.564 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-18 03:50:00.564 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms. 17-03-18 03:50:00.564 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms. 17-03-18 03:50:00.584 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-18 03:50:00.584 -07 000000501 INF: Autofocus start 17-03-18 03:50:00.584 -07 000000501 INF: MeasureProfile start 17-03-18 03:50:00.584 -07 000000480 INF: FPGA: Recv FOCMRRCUR 17-03-18 03:50:00.594 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall 17-03-18 03:50:00.594 -07 000000569 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror] 17-03-18 03:50:00.594 -07 000000501 INF: MeasureProfile done 17-03-18 03:50:00.594 -07 000000501 INF: X=16 Z correction [um]=0.0530179 17-03-18 03:50:00.594 -07 000000501 INF: Autofocus finished 17-03-18 03:50:00.794 -07 000000501 INF: FPGA: Recv FOCMRRIMG 17-03-18 03:50:00.794 -07 000000569 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall 17-03-18 03:50:00.794 -07 000000610 INF: ------------ Scan Snapping tile 11 at Y-position 68.20556640625, Z-position -0.136480245547664. ---------- 17-03-18 03:50:00.794 -07 000000610 INF: Cycle 117 Tile 11 Exposure Settings A 411 G 198 T 198 C 411 17-03-18 03:50:00.804 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28340, sync = True, waitForSettling = True) 17-03-18 03:50:00.804 -07 000000610 INF: Z Motor: Moving to -0.129732 mm, started at -0.136480 mm, distance = 6.75 um 17-03-18 03:50:00.804 -07 000000610 INF: FPGA: Xmit ZDACW 28340\n [Z Motor] 17-03-18 03:50:00.804 -07 000000569 INF: FPGA: Recv ZDACW 17-03-18 03:50:00.814 -07 000000610 INF: FPGA: 'ZDACW 28340' command took 0 ms to send, 0 ms to get response, and 8 ms overall 17-03-18 03:50:00.814 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-18 03:50:00.814 -07 000000474 INF: FPGA: Recv ZDACR 28340 17-03-18 03:50:00.824 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:50:00.824 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-18 03:50:00.974 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:50:00.974 -07 000000569 INF: FPGA: Recv ZSGSRD 29481 17-03-18 03:50:00.984 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-18 03:50:00.984 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:50:00.984 -07 000000474 INF: FPGA: Recv ZSGSRD 29495 17-03-18 03:50:00.994 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:50:00.994 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:50:00.994 -07 000000480 INF: FPGA: Recv ZSGSRD 29476 17-03-18 03:50:01.004 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:50:01.004 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:50:01.004 -07 000000501 INF: FPGA: Recv ZSGSRD 29479 17-03-18 03:50:01.014 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:50:01.014 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:50:01.014 -07 000000501 INF: FPGA: Recv ZSGSRD 29482 17-03-18 03:50:01.024 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:50:01.024 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:50:01.024 -07 000000474 INF: FPGA: Recv ZSGSRD 29493 17-03-18 03:50:01.034 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:50:01.034 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:50:01.034 -07 000000480 INF: FPGA: Recv ZSGSRD 29476 17-03-18 03:50:01.044 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:50:01.044 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:50:01.044 -07 000000569 INF: FPGA: Recv ZSGSRD 29479 17-03-18 03:50:01.054 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:50:01.054 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:50:01.054 -07 000000480 INF: FPGA: Recv ZSGSRD 29487 17-03-18 03:50:01.064 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:50:01.064 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:50:01.064 -07 000000480 INF: FPGA: Recv ZSGSRD 29487 17-03-18 03:50:01.074 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:50:01.074 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-18 03:50:01.074 -07 000000474 INF: FPGA: Recv ZPIEZORD 24952 17-03-18 03:50:01.084 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:50:01.084 -07 000000610 INF: Z Motor: Piezo is near 33.3 V (nominally 0 to 100 V), expect near 43.2 V, since DAC is at 4.324 V. Piezo Error = -9.9 V. 17-03-18 03:50:01.084 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.7 um, Read 10 ADC samples: Avg = 29484 (-129.0 uncal um), Error = 0.8 uncal um, Median = 29482 (-128.9 uncal um), StdDev = 7 (0.0 uncal um), Range = 19 (0.1 uncal um), Min = 29476 (-128.9 uncal um), Max = 29495 (-129.0 uncal um), Pos Noise = 11 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um) 17-03-18 03:50:01.084 -07 000000610 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29484, posNoise = 11, negNoise = 8 17-03-18 03:50:01.084 -07 000000610 INF: Z Motor: After move to -0.129732, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-18 03:50:01.084 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms) 17-03-18 03:50:01.084 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-18 03:50:01.084 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-18 03:50:01.084 -07 000000474 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-18 03:50:01.084 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-18 03:50:01.084 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start. 17-03-18 03:50:01.084 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) start. 17-03-18 03:50:01.084 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start. 17-03-18 03:50:01.084 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-18 03:50:01.084 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms. 17-03-18 03:50:01.084 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start. 17-03-18 03:50:01.084 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-18 03:50:01.084 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start. 17-03-18 03:50:01.094 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms. 17-03-18 03:50:01.094 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start. 17-03-18 03:50:01.094 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms. 17-03-18 03:50:01.094 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start. 17-03-18 03:50:01.104 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms. 17-03-18 03:50:01.104 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 12 ms. 17-03-18 03:50:01.104 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms. 17-03-18 03:50:01.104 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms. 17-03-18 03:50:01.104 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 411 411 198 198 28517 150\n [Camera] 17-03-18 03:50:01.304 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning red on 192 17-03-18 03:50:01.614 -07 000000474 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-18 03:50:01.614 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 116. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1683, R2=1752, Total=3435. Warn if over 250 bubbles per interval. 17-03-18 03:50:01.714 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 603 17-03-18 03:50:01.714 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 603 17-03-18 03:50:01.714 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-18 03:50:01.714 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-18 03:50:01.714 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start. 17-03-18 03:50:01.724 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 603 17-03-18 03:50:01.724 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 603 17-03-18 03:50:01.724 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-18 03:50:01.724 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-18 03:50:01.724 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) start. 17-03-18 03:50:01.904 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28517 796 17-03-18 03:50:02.054 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning grn on 946 17-03-18 03:50:02.114 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 399 ms. 17-03-18 03:50:02.114 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms. 17-03-18 03:50:02.114 -07 000000569 INF: Camera: CopyActivePixFullImage start. 17-03-18 03:50:02.124 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) end. Duration was 399 ms. 17-03-18 03:50:02.124 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms. 17-03-18 03:50:02.124 -07 000000501 INF: Camera: CopyActivePixFullImage start. 17-03-18 03:50:02.124 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-18 03:50:02.124 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms. 17-03-18 03:50:02.124 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-18 03:50:02.134 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms. 17-03-18 03:50:02.254 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1144 17-03-18 03:50:02.254 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1144 17-03-18 03:50:02.254 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-18 03:50:02.254 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-18 03:50:02.254 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) start. 17-03-18 03:50:02.264 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1144 17-03-18 03:50:02.264 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1144 17-03-18 03:50:02.264 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-18 03:50:02.264 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-18 03:50:02.264 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start. 17-03-18 03:50:02.444 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP 1337 17-03-18 03:50:02.444 -07 000000382 INF: FPGA: Recv CAMDBLSNAP 17-03-18 03:50:02.444 -07 000000610 INF: FPGA: 'CAMDBLSNAP 411 411 198 198 28517 150' command took 2 ms to send, 1339 ms to get response, and 1344 ms overall 17-03-18 03:50:02.454 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503 17-03-18 03:50:02.454 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 12 at Y-position 68.20556640625, Z-Position -0.129734822798815. ------ 17-03-18 03:50:02.454 -07 000000474 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-18 03:50:02.454 -07 000000561 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.0426 mm, moving Z to -0.13643 mm 17-03-18 03:50:02.454 -07 000000561 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move 17-03-18 03:50:02.454 -07 000000467 INF: FPGA: Recv FOCMRRCUR 17-03-18 03:50:02.464 -07 000000474 INF: FPGA: 'FOCMRRCUR 80' command took 1 ms to send, 0 ms to get response, and 4 ms overall 17-03-18 03:50:02.464 -07 000000461 INF: Y Motor: Entering MoveAbsStepped (target = 110468 steps, sync = True, waitForSettling = True) 17-03-18 03:50:02.464 -07 000000461 INF: Y Motor: Moving to 69.0426 mm, started at 68.2056 mm, delta = 0.8370 mm 17-03-18 03:50:02.464 -07 000000474 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror] 17-03-18 03:50:02.464 -07 000000382 INF: Z Motor: Entering MoveAbsStepped (DAC = 29802, sync = True, waitForSettling = False) 17-03-18 03:50:02.464 -07 000000382 INF: Z Motor: Moving to -0.136425 mm, started at -0.129735 mm, distance = -6.69 um 17-03-18 03:50:02.474 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 03:50:02.474 -07 000000569 INF: FPGA: Recv YRDPOS 139685 17-03-18 03:50:02.484 -07 000000382 INF: FPGA: Xmit ZDACW 29802\n [Z Motor] 17-03-18 03:50:02.484 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 19 ms overall 17-03-18 03:50:02.484 -07 000000461 INF: Y Motor: Encoder = 139685 = motor step 109128.9 = 68.2056 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 03:50:02.484 -07 000000461 INF: Y Motor: Last commanded position = 68.2126 mm (109140.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True 17-03-18 03:50:02.484 -07 000000461 INF: Y Motor: Moving 1339 steps-15 17-03-18 03:50:02.484 -07 000000606 INF: FPGA: Recv ZDACW 17-03-18 03:50:02.494 -07 000000382 INF: FPGA: 'ZDACW 29802' command took 0 ms to send, 0 ms to get response, and 28 ms overall 17-03-18 03:50:02.494 -07 000000461 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor] 17-03-18 03:50:02.504 -07 000000382 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-18 03:50:02.504 -07 000000438 INF: FPGA: Recv ZDACR 29802 17-03-18 03:50:02.514 -07 000000382 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall 17-03-18 03:50:02.514 -07 000000382 INF: Z Motor: MoveAbsStepped took 49 ms (did NOT wait for settling yet)) 17-03-18 03:50:02.664 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) end. Duration was 401 ms. 17-03-18 03:50:02.664 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms. 17-03-18 03:50:02.664 -07 000000444 INF: Camera: CopyActivePixFullImage start. 17-03-18 03:50:02.664 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 401 ms. 17-03-18 03:50:02.664 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms. 17-03-18 03:50:02.664 -07 000000501 INF: Camera: CopyActivePixFullImage start. 17-03-18 03:50:02.664 -07 000000606 INF: FPGA: Recv FOCMRRFOC 17-03-18 03:50:02.664 -07 000000474 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 203 ms overall 17-03-18 03:50:02.664 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-18 03:50:02.664 -07 000000444 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms. 17-03-18 03:50:02.664 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 410 ms. 17-03-18 03:50:02.674 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms. 17-03-18 03:50:02.864 -07 000000382 INF: FPGA: Recv YMVTILE 17-03-18 03:50:02.864 -07 000000461 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall 17-03-18 03:50:02.914 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 03:50:02.914 -07 000000626 INF: FPGA: Recv YRDPOS 141368 17-03-18 03:50:02.924 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall 17-03-18 03:50:02.924 -07 000000461 INF: Y Motor: Encoder = 141368 = motor step 110443.8 = 69.0273 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 03:50:02.924 -07 000000461 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm) 17-03-18 03:50:02.924 -07 000000461 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 387 ms, distance = 0.837 mm, average velocity = 2.163 mm/sec 17-03-18 03:50:03.874 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 03:50:03.874 -07 000000579 INF: FPGA: Recv YRDPOS 141368 17-03-18 03:50:03.884 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-18 03:50:03.884 -07 000000461 INF: Y Motor: Encoder = 141368 = motor step 110443.8 = 69.0273 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 03:50:03.914 -07 000000461 INF: Y Motor: After move to 69.042610, error = -0.015266, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm 17-03-18 03:50:03.914 -07 000000461 INF: Y Motor: Position error after settling (table move) = -31 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm) 17-03-18 03:50:03.914 -07 000000461 INF: Y Motor: Moved to 69.0273 after 1450 ms (table move) 17-03-18 03:50:03.914 -07 000000561 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136425 mm (DAC = 29802) 17-03-18 03:50:03.914 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:50:03.914 -07 000000501 INF: FPGA: Recv ZSGSRD 30527 17-03-18 03:50:03.924 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall 17-03-18 03:50:03.924 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:50:03.924 -07 000000455 INF: FPGA: Recv ZSGSRD 30531 17-03-18 03:50:03.934 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:50:03.934 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:50:03.934 -07 000000501 INF: FPGA: Recv ZSGSRD 30519 17-03-18 03:50:03.944 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:50:03.944 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:50:03.944 -07 000000606 INF: FPGA: Recv ZSGSRD 30531 17-03-18 03:50:03.954 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:50:03.954 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:50:03.954 -07 000000467 INF: FPGA: Recv ZSGSRD 30527 17-03-18 03:50:03.964 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:50:03.964 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:50:03.964 -07 000000438 INF: FPGA: Recv ZSGSRD 30527 17-03-18 03:50:03.974 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:50:03.974 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:50:03.974 -07 000000501 INF: FPGA: Recv ZSGSRD 30527 17-03-18 03:50:03.984 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:50:03.984 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:50:03.984 -07 000000474 INF: FPGA: Recv ZSGSRD 30520 17-03-18 03:50:03.994 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:50:03.994 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:50:03.994 -07 000000501 INF: FPGA: Recv ZSGSRD 30524 17-03-18 03:50:04.004 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:50:04.004 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:50:04.004 -07 000000606 INF: FPGA: Recv ZSGSRD 30526 17-03-18 03:50:04.014 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:50:04.014 -07 000000561 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-18 03:50:04.014 -07 000000474 INF: FPGA: Recv ZPIEZORD 26335 17-03-18 03:50:04.024 -07 000000561 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:50:04.024 -07 000000561 INF: Z Motor: Piezo is near 36.3 V (nominally 0 to 100 V), expect near 45.5 V, since DAC is at 4.547 V. Piezo Error = -9.2 V. 17-03-18 03:50:04.024 -07 000000561 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.4 um, Read 10 ADC samples: Avg = 30526 (-135.6 uncal um), Error = 0.8 uncal um, Median = 30527 (-135.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 30519 (-135.6 uncal um), Max = 30531 (-135.7 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um) 17-03-18 03:50:04.024 -07 000000561 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30526, posNoise = 5, negNoise = 7 17-03-18 03:50:04.024 -07 000000561 INF: Z Motor: After move to -0.136425, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-18 03:50:04.024 -07 000000561 INF: Z Motor: Settle wait time = 1454 ms, measure time = 105 ms (allowed 150 ms), total time = 1559 ms 17-03-18 03:50:04.024 -07 000000561 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms 17-03-18 03:50:04.074 -07 000000561 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1614 ms 17-03-18 03:50:04.074 -07 000000561 INF: Y Motor: Restored settling times back to 3000 or 1100 ms 17-03-18 03:50:04.074 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-18 03:50:04.074 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-18 03:50:04.074 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-18 03:50:04.074 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-18 03:50:04.074 -07 000000382 INF: Disarm and arm camera sensor 0: ROITrigger start. 17-03-18 03:50:04.074 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-18 03:50:04.074 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-18 03:50:04.074 -07 000000382 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start. 17-03-18 03:50:04.084 -07 000000382 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms. 17-03-18 03:50:04.084 -07 000000382 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start. 17-03-18 03:50:04.094 -07 000000382 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 9 ms. 17-03-18 03:50:04.094 -07 000000382 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 13 ms. 17-03-18 03:50:04.094 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera] 17-03-18 03:50:04.134 -07 000000569 INF: FPGA: Recv @CAMSNAP turning led on 40 17-03-18 03:50:04.434 -07 000000455 INF: FPGA: Recv @CAMSNAP img rdy 340 17-03-18 03:50:04.434 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340 17-03-18 03:50:04.434 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start. 17-03-18 03:50:04.444 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1201016592, 0x0, 559484976) start. 17-03-18 03:50:04.474 -07 000000382 INF: FPGA: Recv @CAMSNAP 380 17-03-18 03:50:04.474 -07 000000561 INF: FPGA: Recv CAMSNAP 17-03-18 03:50:04.474 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 379 ms to get response, and 384 ms overall 17-03-18 03:50:04.554 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1201016592, 0x0, 559484976) end. Duration was 117 ms. 17-03-18 03:50:04.554 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-18 03:50:04.554 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms. 17-03-18 03:50:04.554 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms. 17-03-18 03:50:04.574 -07 000000444 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-18 03:50:04.574 -07 000000382 INF: Autofocus start 17-03-18 03:50:04.574 -07 000000382 INF: MeasureProfile start 17-03-18 03:50:04.574 -07 000000474 INF: FPGA: Recv FOCMRRCUR 17-03-18 03:50:04.584 -07 000000444 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall 17-03-18 03:50:04.584 -07 000000444 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror] 17-03-18 03:50:04.584 -07 000000382 INF: MeasureProfile done 17-03-18 03:50:04.584 -07 000000382 INF: X=0 Z correction [um]=-0.02394831 17-03-18 03:50:04.584 -07 000000382 INF: Autofocus finished 17-03-18 03:50:04.734 -07 000000480 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 117, FrontChillerTemperature: 3.981281, 17-03-18 03:50:04.784 -07 000000461 INF: FPGA: Recv FOCMRRIMG 17-03-18 03:50:04.784 -07 000000444 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall 17-03-18 03:50:04.784 -07 000000610 INF: ------------ Scan Snapping tile 12 at Y-position 69.02734375, Z-position -0.13642885185053. ---------- 17-03-18 03:50:04.794 -07 000000610 INF: Cycle 117 Tile 12 Exposure Settings A 411 G 198 T 198 C 411 17-03-18 03:50:04.794 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28310, sync = True, waitForSettling = True) 17-03-18 03:50:04.794 -07 000000610 INF: Z Motor: Moving to -0.129595 mm, started at -0.136429 mm, distance = 6.83 um 17-03-18 03:50:04.794 -07 000000610 INF: FPGA: Xmit ZDACW 28310\n [Z Motor] 17-03-18 03:50:04.794 -07 000000455 INF: FPGA: Recv ZDACW 17-03-18 03:50:04.804 -07 000000610 INF: FPGA: 'ZDACW 28310' command took 0 ms to send, 0 ms to get response, and 7 ms overall 17-03-18 03:50:04.804 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-18 03:50:04.804 -07 000000461 INF: FPGA: Recv ZDACR 28310 17-03-18 03:50:04.814 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:50:04.814 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-18 03:50:04.964 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:50:04.964 -07 000000461 INF: FPGA: Recv ZSGSRD 29461 17-03-18 03:50:04.974 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-18 03:50:04.974 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:50:04.974 -07 000000461 INF: FPGA: Recv ZSGSRD 29464 17-03-18 03:50:04.984 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:50:04.984 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:50:04.984 -07 000000455 INF: FPGA: Recv ZSGSRD 29463 17-03-18 03:50:04.994 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:50:04.994 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:50:04.994 -07 000000444 INF: FPGA: Recv ZSGSRD 29465 17-03-18 03:50:05.004 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:50:05.004 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:50:05.004 -07 000000461 INF: FPGA: Recv ZSGSRD 29461 17-03-18 03:50:05.014 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:50:05.024 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:50:05.024 -07 000000444 INF: FPGA: Recv ZSGSRD 29463 17-03-18 03:50:05.034 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall 17-03-18 03:50:05.034 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:50:05.034 -07 000000455 INF: FPGA: Recv ZSGSRD 29461 17-03-18 03:50:05.044 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:50:05.044 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:50:05.044 -07 000000455 INF: FPGA: Recv ZSGSRD 29461 17-03-18 03:50:05.054 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:50:05.054 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:50:05.054 -07 000000455 INF: FPGA: Recv ZSGSRD 29462 17-03-18 03:50:05.064 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:50:05.064 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:50:05.064 -07 000000461 INF: FPGA: Recv ZSGSRD 29466 17-03-18 03:50:05.074 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:50:05.074 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-18 03:50:05.074 -07 000000455 INF: FPGA: Recv ZPIEZORD 24928 17-03-18 03:50:05.084 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:50:05.084 -07 000000610 INF: Z Motor: Piezo is near 33.3 V (nominally 0 to 100 V), expect near 43.2 V, since DAC is at 4.320 V. Piezo Error = -9.9 V. 17-03-18 03:50:05.084 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.6 um, Read 10 ADC samples: Avg = 29463 (-128.8 uncal um), Error = 0.8 uncal um, Median = 29462 (-128.8 uncal um), StdDev = 2 (0.0 uncal um), Range = 5 (0.0 uncal um), Min = 29461 (-128.8 uncal um), Max = 29466 (-128.8 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 2 (0.0 uncal um) 17-03-18 03:50:05.084 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29463, posNoise = 3, negNoise = 2 17-03-18 03:50:05.084 -07 000000610 INF: Z Motor: After move to -0.129595, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-18 03:50:05.084 -07 000000610 INF: Z Motor: MoveAbsStepped took 288 ms) 17-03-18 03:50:05.084 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-18 03:50:05.084 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-18 03:50:05.084 -07 000000455 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start. 17-03-18 03:50:05.084 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-18 03:50:05.084 -07 000000461 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-18 03:50:05.084 -07 000000444 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-18 03:50:05.084 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-18 03:50:05.084 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start. 17-03-18 03:50:05.094 -07 000000461 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start. 17-03-18 03:50:05.094 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074704) start. 17-03-18 03:50:05.094 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms. 17-03-18 03:50:05.094 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start. 17-03-18 03:50:05.094 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms. 17-03-18 03:50:05.094 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start. 17-03-18 03:50:05.094 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms. 17-03-18 03:50:05.094 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start. 17-03-18 03:50:05.104 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms. 17-03-18 03:50:05.104 -07 000000455 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms. 17-03-18 03:50:05.104 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms. 17-03-18 03:50:05.104 -07 000000461 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms. 17-03-18 03:50:05.104 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 411 411 198 198 28487 150\n [Camera] 17-03-18 03:50:05.304 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP turning red on 192 17-03-18 03:50:05.714 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 603 17-03-18 03:50:05.714 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 603 17-03-18 03:50:05.714 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-18 03:50:05.714 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-18 03:50:05.714 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 2585563240, 0x0, 391868352) start. 17-03-18 03:50:05.724 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 603 17-03-18 03:50:05.724 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 603 17-03-18 03:50:05.724 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-18 03:50:05.724 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-18 03:50:05.724 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 2620985504, 0x0, 418435064) start. 17-03-18 03:50:05.914 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28487 796 17-03-18 03:50:06.054 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP turning grn on 946 17-03-18 03:50:06.094 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 2620985504, 0x0, 418435064) end. Duration was 377 ms. 17-03-18 03:50:06.094 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms. 17-03-18 03:50:06.094 -07 000000012 INF: Camera: CopyActivePixFullImage start. 17-03-18 03:50:06.094 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 2585563240, 0x0, 391868352) end. Duration was 380 ms. 17-03-18 03:50:06.104 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms. 17-03-18 03:50:06.104 -07 000000461 INF: Camera: CopyActivePixFullImage start. 17-03-18 03:50:06.104 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-18 03:50:06.104 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-18 03:50:06.104 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms. 17-03-18 03:50:06.114 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms. 17-03-18 03:50:06.254 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1144 17-03-18 03:50:06.254 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1144 17-03-18 03:50:06.254 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-18 03:50:06.254 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-18 03:50:06.254 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 2684358704, 0x0, 391868352) start. 17-03-18 03:50:06.264 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1144 17-03-18 03:50:06.264 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1144 17-03-18 03:50:06.264 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-18 03:50:06.404 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-18 03:50:06.404 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) start. 17-03-18 03:50:06.444 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP 1336 17-03-18 03:50:06.454 -07 000000461 INF: FPGA: Recv CAMDBLSNAP 17-03-18 03:50:06.454 -07 000000610 INF: FPGA: 'CAMDBLSNAP 411 411 198 198 28487 150' command took 2 ms to send, 1340 ms to get response, and 1343 ms overall 17-03-18 03:50:06.454 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503 17-03-18 03:50:06.454 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 13 at Y-position 69.02734375, Z-Position -0.129599914343838. ------ 17-03-18 03:50:06.454 -07 000000455 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-18 03:50:06.454 -07 000000012 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.8726 mm, moving Z to -0.13602 mm 17-03-18 03:50:06.454 -07 000000012 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move 17-03-18 03:50:06.454 -07 000000461 INF: FPGA: Recv FOCMRRCUR 17-03-18 03:50:06.454 -07 000000444 INF: Y Motor: Entering MoveAbsStepped (target = 111796 steps, sync = True, waitForSettling = True) 17-03-18 03:50:06.454 -07 000000444 INF: Y Motor: Moving to 69.8726 mm, started at 69.0273 mm, delta = 0.8453 mm 17-03-18 03:50:06.454 -07 000000438 INF: Z Motor: Entering MoveAbsStepped (DAC = 29713, sync = True, waitForSettling = False) 17-03-18 03:50:06.454 -07 000000438 INF: Z Motor: Moving to -0.136017 mm, started at -0.129600 mm, distance = -6.42 um 17-03-18 03:50:06.464 -07 000000444 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 03:50:06.464 -07 000000455 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall 17-03-18 03:50:06.464 -07 000000382 INF: FPGA: Recv YRDPOS 141368 17-03-18 03:50:06.474 -07 000000444 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-18 03:50:06.474 -07 000000444 INF: Y Motor: Encoder = 141368 = motor step 110443.8 = 69.0273 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 03:50:06.474 -07 000000455 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror] 17-03-18 03:50:06.474 -07 000000444 INF: Y Motor: Last commanded position = 69.0426 mm (110468.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True 17-03-18 03:50:06.474 -07 000000444 INF: Y Motor: Moving 1352 steps-31 17-03-18 03:50:06.484 -07 000000438 INF: FPGA: Xmit ZDACW 29713\n [Z Motor] 17-03-18 03:50:06.484 -07 000000382 INF: FPGA: Recv ZDACW 17-03-18 03:50:06.494 -07 000000444 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor] 17-03-18 03:50:06.494 -07 000000438 INF: FPGA: 'ZDACW 29713' command took 0 ms to send, 0 ms to get response, and 30 ms overall 17-03-18 03:50:06.504 -07 000000438 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-18 03:50:06.504 -07 000000461 INF: FPGA: Recv ZDACR 29713 17-03-18 03:50:06.514 -07 000000438 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall 17-03-18 03:50:06.514 -07 000000438 INF: Z Motor: MoveAbsStepped took 50 ms (did NOT wait for settling yet)) 17-03-18 03:50:06.614 -07 000000382 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-18 03:50:06.614 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 116. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1683, R2=1752, Total=3435. Warn if over 250 bubbles per interval. 17-03-18 03:50:06.664 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 2684358704, 0x0, 391868352) end. Duration was 407 ms. 17-03-18 03:50:06.664 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 407 ms. 17-03-18 03:50:06.664 -07 000000474 INF: Camera: CopyActivePixFullImage start. 17-03-18 03:50:06.674 -07 000000382 INF: FPGA: Recv FOCMRRFOC 17-03-18 03:50:06.674 -07 000000455 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 212 ms overall 17-03-18 03:50:06.674 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms. 17-03-18 03:50:06.674 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 414 ms. 17-03-18 03:50:06.784 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) end. Duration was 379 ms. 17-03-18 03:50:06.784 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms. 17-03-18 03:50:06.784 -07 000000561 INF: Camera: CopyActivePixFullImage start. 17-03-18 03:50:06.784 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms. 17-03-18 03:50:06.794 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 532 ms. 17-03-18 03:50:06.864 -07 000000626 INF: FPGA: Recv YMVTILE 17-03-18 03:50:06.864 -07 000000444 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 369 ms to get response, and 398 ms overall 17-03-18 03:50:06.914 -07 000000444 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 03:50:06.924 -07 000000561 INF: FPGA: Recv YRDPOS 143080 17-03-18 03:50:06.924 -07 000000444 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall 17-03-18 03:50:06.924 -07 000000444 INF: Y Motor: Encoder = 143080 = motor step 111781.3 = 69.8633 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 03:50:06.924 -07 000000444 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm) 17-03-18 03:50:06.924 -07 000000444 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.845 mm, average velocity = 2.124 mm/sec 17-03-18 03:50:07.874 -07 000000444 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 03:50:07.874 -07 000000579 INF: FPGA: Recv YRDPOS 143081 17-03-18 03:50:07.884 -07 000000444 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-18 03:50:07.884 -07 000000444 INF: Y Motor: Encoder = 143081 = motor step 111782.0 = 69.8638 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 03:50:07.904 -07 000000444 INF: Y Motor: After move to 69.872612, error = -0.008842, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm 17-03-18 03:50:07.914 -07 000000444 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 1 counts (0.000 mm) 17-03-18 03:50:07.914 -07 000000444 INF: Y Motor: Moved to 69.8638 after 1451 ms (table move) 17-03-18 03:50:07.914 -07 000000012 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136017 mm (DAC = 29713) 17-03-18 03:50:07.914 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:50:07.914 -07 000000474 INF: FPGA: Recv ZSGSRD 30463 17-03-18 03:50:07.924 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall 17-03-18 03:50:07.924 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:50:07.924 -07 000000474 INF: FPGA: Recv ZSGSRD 30469 17-03-18 03:50:07.934 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:50:07.934 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:50:07.934 -07 000000474 INF: FPGA: Recv ZSGSRD 30453 17-03-18 03:50:07.944 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:50:07.944 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:50:07.944 -07 000000474 INF: FPGA: Recv ZSGSRD 30461 17-03-18 03:50:07.954 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:50:07.954 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:50:07.954 -07 000000474 INF: FPGA: Recv ZSGSRD 30458 17-03-18 03:50:07.964 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:50:07.964 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:50:07.964 -07 000000474 INF: FPGA: Recv ZSGSRD 30459 17-03-18 03:50:07.974 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:50:07.974 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:50:07.974 -07 000000474 INF: FPGA: Recv ZSGSRD 30462 17-03-18 03:50:07.984 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:50:07.984 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:50:07.984 -07 000000474 INF: FPGA: Recv ZSGSRD 30461 17-03-18 03:50:07.994 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:50:07.994 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:50:07.994 -07 000000474 INF: FPGA: Recv ZSGSRD 30456 17-03-18 03:50:08.004 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:50:08.004 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:50:08.004 -07 000000474 INF: FPGA: Recv ZSGSRD 30462 17-03-18 03:50:08.014 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:50:08.014 -07 000000012 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-18 03:50:08.014 -07 000000474 INF: FPGA: Recv ZPIEZORD 26267 17-03-18 03:50:08.024 -07 000000012 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:50:08.024 -07 000000012 INF: Z Motor: Piezo is near 36.1 V (nominally 0 to 100 V), expect near 45.3 V, since DAC is at 4.534 V. Piezo Error = -9.2 V. 17-03-18 03:50:08.024 -07 000000012 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.0 um, Read 10 ADC samples: Avg = 30460 (-135.2 uncal um), Error = 0.8 uncal um, Median = 30461 (-135.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 30453 (-135.2 uncal um), Max = 30469 (-135.3 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um) 17-03-18 03:50:08.024 -07 000000012 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30460, posNoise = 9, negNoise = 7 17-03-18 03:50:08.024 -07 000000012 INF: Z Motor: After move to -0.136017, error = 0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-18 03:50:08.024 -07 000000012 INF: Z Motor: Settle wait time = 1453 ms, measure time = 109 ms (allowed 150 ms), total time = 1562 ms 17-03-18 03:50:08.024 -07 000000012 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms 17-03-18 03:50:08.074 -07 000000012 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1614 ms 17-03-18 03:50:08.074 -07 000000012 INF: Y Motor: Restored settling times back to 3000 or 1100 ms 17-03-18 03:50:08.074 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-18 03:50:08.074 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-18 03:50:08.074 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-18 03:50:08.074 -07 000000474 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-18 03:50:08.074 -07 000000467 INF: Disarm and arm camera sensor 0: ROITrigger start. 17-03-18 03:50:08.074 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-18 03:50:08.074 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-18 03:50:08.074 -07 000000467 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start. 17-03-18 03:50:08.084 -07 000000467 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms. 17-03-18 03:50:08.084 -07 000000467 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start. 17-03-18 03:50:08.084 -07 000000467 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms. 17-03-18 03:50:08.084 -07 000000467 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms. 17-03-18 03:50:08.094 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera] 17-03-18 03:50:08.134 -07 000000569 INF: FPGA: Recv @CAMSNAP turning led on 40 17-03-18 03:50:08.434 -07 000000569 INF: FPGA: Recv @CAMSNAP img rdy 340 17-03-18 03:50:08.434 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340 17-03-18 03:50:08.434 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start. 17-03-18 03:50:08.444 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 639799168, 0x0, 559484976) start. 17-03-18 03:50:08.474 -07 000000569 INF: FPGA: Recv @CAMSNAP 380 17-03-18 03:50:08.474 -07 000000569 INF: FPGA: Recv CAMSNAP 17-03-18 03:50:08.474 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 378 ms to get response, and 384 ms overall 17-03-18 03:50:08.564 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 639799168, 0x0, 559484976) end. Duration was 119 ms. 17-03-18 03:50:08.564 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-18 03:50:08.564 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms. 17-03-18 03:50:08.564 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 122 ms. 17-03-18 03:50:08.574 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-18 03:50:09.324 -07 000000606 INF: Autofocus start 17-03-18 03:50:09.324 -07 000000606 INF: MeasureProfile start 17-03-18 03:50:09.334 -07 000000606 INF: MeasureProfile done 17-03-18 03:50:09.334 -07 000000606 INF: X=32 Z correction [um]=0.1299841 17-03-18 03:50:09.334 -07 000000606 INF: Autofocus finished 17-03-18 03:50:09.334 -07 000000606 INF: FPGA: Recv FOCMRRCUR 17-03-18 03:50:09.334 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 757 ms to get response, and 762 ms overall 17-03-18 03:50:09.334 -07 000000569 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror] 17-03-18 03:50:09.544 -07 000000606 INF: FPGA: Recv FOCMRRIMG 17-03-18 03:50:09.544 -07 000000569 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 200 ms to get response, and 202 ms overall 17-03-18 03:50:09.544 -07 000000610 INF: ------------ Scan Snapping tile 13 at Y-position 69.86376953125, Z-position -0.136004853849174. ---------- 17-03-18 03:50:09.544 -07 000000610 INF: Cycle 117 Tile 13 Exposure Settings A 411 G 198 T 198 C 411 17-03-18 03:50:09.544 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28254, sync = True, waitForSettling = True) 17-03-18 03:50:09.544 -07 000000610 INF: Z Motor: Moving to -0.129339 mm, started at -0.136005 mm, distance = 6.67 um 17-03-18 03:50:09.544 -07 000000610 INF: FPGA: Xmit ZDACW 28254\n [Z Motor] 17-03-18 03:50:09.554 -07 000000606 INF: FPGA: Recv ZDACW 17-03-18 03:50:09.554 -07 000000610 INF: FPGA: 'ZDACW 28254' command took 0 ms to send, 0 ms to get response, and 2 ms overall 17-03-18 03:50:09.554 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-18 03:50:09.554 -07 000000569 INF: FPGA: Recv ZDACR 28254 17-03-18 03:50:09.564 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:50:09.564 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-18 03:50:09.714 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:50:09.714 -07 000000569 INF: FPGA: Recv ZSGSRD 29424 17-03-18 03:50:09.724 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-18 03:50:09.724 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:50:09.724 -07 000000569 INF: FPGA: Recv ZSGSRD 29425 17-03-18 03:50:09.734 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:50:09.734 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:50:09.734 -07 000000569 INF: FPGA: Recv ZSGSRD 29415 17-03-18 03:50:09.744 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:50:09.744 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:50:09.744 -07 000000606 INF: FPGA: Recv ZSGSRD 29422 17-03-18 03:50:09.754 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:50:09.754 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:50:09.754 -07 000000606 INF: FPGA: Recv ZSGSRD 29431 17-03-18 03:50:09.764 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:50:09.764 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:50:09.764 -07 000000606 INF: FPGA: Recv ZSGSRD 29425 17-03-18 03:50:09.774 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:50:09.784 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:50:09.784 -07 000000569 INF: FPGA: Recv ZSGSRD 29426 17-03-18 03:50:09.794 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall 17-03-18 03:50:09.794 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:50:09.794 -07 000000569 INF: FPGA: Recv ZSGSRD 29422 17-03-18 03:50:09.804 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:50:09.804 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:50:09.804 -07 000000569 INF: FPGA: Recv ZSGSRD 29422 17-03-18 03:50:09.814 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:50:09.814 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:50:09.814 -07 000000569 INF: FPGA: Recv ZSGSRD 29418 17-03-18 03:50:09.824 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:50:09.824 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-18 03:50:09.824 -07 000000569 INF: FPGA: Recv ZPIEZORD 24927 17-03-18 03:50:09.834 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:50:09.834 -07 000000610 INF: Z Motor: Piezo is near 33.3 V (nominally 0 to 100 V), expect near 43.1 V, since DAC is at 4.311 V. Piezo Error = -9.9 V. 17-03-18 03:50:09.834 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.3 um, Read 10 ADC samples: Avg = 29423 (-128.6 uncal um), Error = 0.8 uncal um, Median = 29423 (-128.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 29415 (-128.5 uncal um), Max = 29431 (-128.6 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um) 17-03-18 03:50:09.834 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29423, posNoise = 8, negNoise = 8 17-03-18 03:50:09.834 -07 000000610 INF: Z Motor: After move to -0.129339, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-18 03:50:09.834 -07 000000610 INF: Z Motor: MoveAbsStepped took 283 ms) 17-03-18 03:50:09.834 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-18 03:50:09.834 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-18 03:50:09.834 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-18 03:50:09.834 -07 000000606 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-18 03:50:09.834 -07 000000606 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start. 17-03-18 03:50:09.834 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start. 17-03-18 03:50:09.834 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-18 03:50:09.834 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074704) start. 17-03-18 03:50:09.834 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-18 03:50:09.844 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 3 ms. 17-03-18 03:50:09.844 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start. 17-03-18 03:50:09.844 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start. 17-03-18 03:50:09.844 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms. 17-03-18 03:50:09.844 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start. 17-03-18 03:50:09.844 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms. 17-03-18 03:50:09.844 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start. 17-03-18 03:50:09.864 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms. 17-03-18 03:50:09.864 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms. 17-03-18 03:50:09.864 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms. 17-03-18 03:50:09.864 -07 000000606 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 23 ms. 17-03-18 03:50:09.864 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 411 411 198 198 28430 150\n [Camera] 17-03-18 03:50:10.064 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning red on 192 17-03-18 03:50:10.094 -07 000000474 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 117, FrontChillerTemperature: 3.96762, 17-03-18 03:50:10.474 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 603 17-03-18 03:50:10.474 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 603 17-03-18 03:50:10.474 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-18 03:50:10.474 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 603 17-03-18 03:50:10.474 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 603 17-03-18 03:50:10.474 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-18 03:50:10.474 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-18 03:50:10.474 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 2165554656, 0x0, 391868352) start. 17-03-18 03:50:10.484 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-18 03:50:10.484 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2200976920, 0x0, 418435064) start. 17-03-18 03:50:10.664 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28430 796 17-03-18 03:50:10.814 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning grn on 946 17-03-18 03:50:10.874 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 2165554656, 0x0, 391868352) end. Duration was 395 ms. 17-03-18 03:50:10.874 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms. 17-03-18 03:50:10.874 -07 000000606 INF: Camera: CopyActivePixFullImage start. 17-03-18 03:50:10.874 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2200976920, 0x0, 418435064) end. Duration was 394 ms. 17-03-18 03:50:10.874 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms. 17-03-18 03:50:10.874 -07 000000501 INF: Camera: CopyActivePixFullImage start. 17-03-18 03:50:10.874 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-18 03:50:10.874 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms. 17-03-18 03:50:10.884 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-18 03:50:10.884 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms. 17-03-18 03:50:11.014 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1144 17-03-18 03:50:11.014 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1144 17-03-18 03:50:11.014 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-18 03:50:11.014 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1144 17-03-18 03:50:11.014 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1144 17-03-18 03:50:11.014 -07 000000474 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-18 03:50:11.134 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-18 03:50:11.134 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start. 17-03-18 03:50:11.144 -07 000000474 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-18 03:50:11.144 -07 000000474 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) start. 17-03-18 03:50:11.204 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP 1336 17-03-18 03:50:11.204 -07 000000501 INF: FPGA: Recv CAMDBLSNAP 17-03-18 03:50:11.204 -07 000000610 INF: FPGA: 'CAMDBLSNAP 411 411 198 198 28430 150' command took 2 ms to send, 1336 ms to get response, and 1343 ms overall 17-03-18 03:50:11.204 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503 17-03-18 03:50:11.204 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 14 at Y-position 69.86376953125, Z-Position -0.129342945858168. ------ 17-03-18 03:50:11.214 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-18 03:50:11.214 -07 000000606 INF: Y Motor: MoveYZ optimized starting. Moving Y to 70.7026 mm, moving Z to -0.13527 mm 17-03-18 03:50:11.214 -07 000000606 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move 17-03-18 03:50:11.214 -07 000000501 INF: Y Motor: Entering MoveAbsStepped (target = 113124 steps, sync = True, waitForSettling = True) 17-03-18 03:50:11.214 -07 000000501 INF: Y Motor: Moving to 70.7026 mm, started at 69.8638 mm, delta = 0.8388 mm 17-03-18 03:50:11.214 -07 000000579 INF: FPGA: Recv FOCMRRCUR 17-03-18 03:50:11.214 -07 000000480 INF: Z Motor: Entering MoveAbsStepped (DAC = 29550, sync = True, waitForSettling = False) 17-03-18 03:50:11.214 -07 000000480 INF: Z Motor: Moving to -0.135271 mm, started at -0.129343 mm, distance = -5.93 um 17-03-18 03:50:11.224 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall 17-03-18 03:50:11.224 -07 000000480 INF: FPGA: Xmit ZDACW 29550\n [Z Motor] 17-03-18 03:50:11.224 -07 000000382 INF: FPGA: Recv ZDACW 17-03-18 03:50:11.234 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 03:50:11.234 -07 000000480 INF: FPGA: 'ZDACW 29550' command took 0 ms to send, 0 ms to get response, and 13 ms overall 17-03-18 03:50:11.234 -07 000000579 INF: FPGA: Recv YRDPOS 143081 17-03-18 03:50:11.244 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 24 ms overall 17-03-18 03:50:11.244 -07 000000501 INF: Y Motor: Encoder = 143081 = motor step 111782.0 = 69.8638 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 03:50:11.244 -07 000000501 INF: Y Motor: Last commanded position = 69.8726 mm (111796.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True 17-03-18 03:50:11.244 -07 000000501 INF: Y Motor: Moving 1342 steps-19 17-03-18 03:50:11.244 -07 000000569 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror] 17-03-18 03:50:11.254 -07 000000480 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-18 03:50:11.254 -07 000000012 INF: FPGA: Recv ZDACR 29550 17-03-18 03:50:11.264 -07 000000501 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor] 17-03-18 03:50:11.264 -07 000000480 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall 17-03-18 03:50:11.264 -07 000000480 INF: Z Motor: MoveAbsStepped took 43 ms (did NOT wait for settling yet)) 17-03-18 03:50:11.444 -07 000000444 INF: FPGA: Recv FOCMRRFOC 17-03-18 03:50:11.444 -07 000000569 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 193 ms to get response, and 223 ms overall 17-03-18 03:50:11.534 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 398 ms. 17-03-18 03:50:11.534 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms. 17-03-18 03:50:11.534 -07 000000455 INF: Camera: CopyActivePixFullImage start. 17-03-18 03:50:11.534 -07 000000474 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) end. Duration was 397 ms. 17-03-18 03:50:11.534 -07 000000474 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms. 17-03-18 03:50:11.534 -07 000000474 INF: Camera: CopyActivePixFullImage start. 17-03-18 03:50:11.544 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-18 03:50:11.544 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 526 ms. 17-03-18 03:50:11.544 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-18 03:50:11.544 -07 000000474 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 531 ms. 17-03-18 03:50:11.614 -07 000000474 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-18 03:50:11.614 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 116. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1683, R2=1752, Total=3435. Warn if over 250 bubbles per interval. 17-03-18 03:50:11.634 -07 000000012 INF: FPGA: Recv YMVTILE 17-03-18 03:50:11.634 -07 000000501 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall 17-03-18 03:50:11.684 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 03:50:11.684 -07 000000012 INF: FPGA: Recv YRDPOS 144770 17-03-18 03:50:11.694 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall 17-03-18 03:50:11.694 -07 000000501 INF: Y Motor: Encoder = 144770 = motor step 113101.6 = 70.6885 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 03:50:11.694 -07 000000501 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm) 17-03-18 03:50:11.694 -07 000000501 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.839 mm, average velocity = 2.113 mm/sec 17-03-18 03:50:12.644 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 03:50:13.524 -07 000000480 INF: FPGA: Recv YRDPOS 144770 17-03-18 03:50:13.524 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 870 ms to get response, and 880 ms overall 17-03-18 03:50:13.524 -07 000000501 INF: Y Motor: Encoder = 144770 = motor step 113101.6 = 70.6885 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 03:50:13.554 -07 000000501 INF: Y Motor: After move to 70.702606, error = -0.014130, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm 17-03-18 03:50:13.554 -07 000000501 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm) 17-03-18 03:50:13.554 -07 000000501 INF: Y Motor: Moved to 70.6885 after 2334 ms (table move) 17-03-18 03:50:13.554 -07 000000606 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135271 mm (DAC = 29550) 17-03-18 03:50:13.554 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:50:13.554 -07 000000561 INF: FPGA: Recv ZSGSRD 30349 17-03-18 03:50:13.564 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall 17-03-18 03:50:13.564 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:50:13.564 -07 000000579 INF: FPGA: Recv ZSGSRD 30348 17-03-18 03:50:13.574 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:50:13.574 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:50:13.574 -07 000000455 INF: FPGA: Recv ZSGSRD 30344 17-03-18 03:50:13.584 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:50:13.584 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:50:13.584 -07 000000569 INF: FPGA: Recv ZSGSRD 30348 17-03-18 03:50:13.594 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:50:13.594 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:50:13.594 -07 000000012 INF: FPGA: Recv ZSGSRD 30345 17-03-18 03:50:13.604 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:50:13.604 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:50:13.604 -07 000000480 INF: FPGA: Recv ZSGSRD 30347 17-03-18 03:50:13.614 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:50:13.614 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:50:13.614 -07 000000444 INF: FPGA: Recv ZSGSRD 30342 17-03-18 03:50:13.624 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:50:13.624 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:50:13.624 -07 000000382 INF: FPGA: Recv ZSGSRD 30351 17-03-18 03:50:13.634 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:50:13.634 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:50:13.634 -07 000000501 INF: FPGA: Recv ZSGSRD 30344 17-03-18 03:50:13.644 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:50:13.644 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:50:13.644 -07 000000569 INF: FPGA: Recv ZSGSRD 30348 17-03-18 03:50:13.654 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:50:13.654 -07 000000606 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-18 03:50:13.654 -07 000000579 INF: FPGA: Recv ZPIEZORD 26114 17-03-18 03:50:13.664 -07 000000606 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:50:13.664 -07 000000606 INF: Z Motor: Piezo is near 35.8 V (nominally 0 to 100 V), expect near 45.1 V, since DAC is at 4.509 V. Piezo Error = -9.3 V. 17-03-18 03:50:13.664 -07 000000606 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.3 um, Read 10 ADC samples: Avg = 30347 (-134.5 uncal um), Error = 0.8 uncal um, Median = 30348 (-134.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 30342 (-134.5 uncal um), Max = 30351 (-134.5 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um) 17-03-18 03:50:13.664 -07 000000606 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30347, posNoise = 4, negNoise = 5 17-03-18 03:50:13.664 -07 000000606 INF: Z Motor: After move to -0.135271, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-18 03:50:13.664 -07 000000606 INF: Z Motor: Settle wait time = 2337 ms, measure time = 106 ms (allowed 150 ms), total time = 2443 ms 17-03-18 03:50:13.664 -07 000000606 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms 17-03-18 03:50:13.714 -07 000000606 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2497 ms 17-03-18 03:50:13.714 -07 000000606 INF: Y Motor: Restored settling times back to 3000 or 1100 ms 17-03-18 03:50:13.714 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-18 03:50:13.714 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-18 03:50:13.714 -07 000000444 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-18 03:50:13.714 -07 000000012 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-18 03:50:13.714 -07 000000382 INF: Disarm and arm camera sensor 0: ROITrigger start. 17-03-18 03:50:13.714 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-18 03:50:13.714 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms. 17-03-18 03:50:13.714 -07 000000382 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start. 17-03-18 03:50:13.714 -07 000000382 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms. 17-03-18 03:50:13.724 -07 000000382 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start. 17-03-18 03:50:13.724 -07 000000382 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms. 17-03-18 03:50:13.724 -07 000000382 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms. 17-03-18 03:50:13.734 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera] 17-03-18 03:50:13.774 -07 000000382 INF: FPGA: Recv @CAMSNAP turning led on 40 17-03-18 03:50:14.074 -07 000000012 INF: FPGA: Recv @CAMSNAP img rdy 340 17-03-18 03:50:14.074 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340 17-03-18 03:50:14.074 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start. 17-03-18 03:50:14.084 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 639799168, 0x0, 559484976) start. 17-03-18 03:50:14.114 -07 000000455 INF: FPGA: Recv @CAMSNAP 380 17-03-18 03:50:14.114 -07 000000382 INF: FPGA: Recv CAMSNAP 17-03-18 03:50:14.114 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 378 ms to get response, and 386 ms overall 17-03-18 03:50:14.194 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 639799168, 0x0, 559484976) end. Duration was 118 ms. 17-03-18 03:50:14.194 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-18 03:50:14.204 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms. 17-03-18 03:50:14.204 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 120 ms. 17-03-18 03:50:14.214 -07 000000561 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-18 03:50:14.214 -07 000000501 INF: Autofocus start 17-03-18 03:50:14.214 -07 000000501 INF: MeasureProfile start 17-03-18 03:50:14.214 -07 000000569 INF: FPGA: Recv FOCMRRCUR 17-03-18 03:50:14.224 -07 000000561 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall 17-03-18 03:50:14.224 -07 000000561 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror] 17-03-18 03:50:14.224 -07 000000501 INF: MeasureProfile done 17-03-18 03:50:14.224 -07 000000501 INF: X=96 Z correction [um]=0.437849 17-03-18 03:50:14.224 -07 000000501 INF: Autofocus finished 17-03-18 03:50:14.424 -07 000000444 INF: FPGA: Recv FOCMRRIMG 17-03-18 03:50:14.424 -07 000000561 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall 17-03-18 03:50:14.424 -07 000000610 INF: ------------ Scan Snapping tile 14 at Y-position 70.6884765625, Z-position -0.135278917877155. ---------- 17-03-18 03:50:14.424 -07 000000610 INF: Cycle 117 Tile 14 Exposure Settings A 411 G 198 T 198 C 411 17-03-18 03:50:14.434 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28158, sync = True, waitForSettling = True) 17-03-18 03:50:14.434 -07 000000610 INF: Z Motor: Moving to -0.128899 mm, started at -0.135279 mm, distance = 6.38 um 17-03-18 03:50:14.434 -07 000000610 INF: FPGA: Xmit ZDACW 28158\n [Z Motor] 17-03-18 03:50:14.434 -07 000000012 INF: FPGA: Recv ZDACW 17-03-18 03:50:14.444 -07 000000610 INF: FPGA: 'ZDACW 28158' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:50:14.444 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-18 03:50:14.444 -07 000000455 INF: FPGA: Recv ZDACR 28158 17-03-18 03:50:14.454 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:50:14.454 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-18 03:50:14.604 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:50:14.604 -07 000000012 INF: FPGA: Recv ZSGSRD 29354 17-03-18 03:50:14.614 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-18 03:50:14.614 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:50:14.614 -07 000000480 INF: FPGA: Recv ZSGSRD 29358 17-03-18 03:50:14.624 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall 17-03-18 03:50:14.624 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:50:14.624 -07 000000606 INF: FPGA: Recv ZSGSRD 29356 17-03-18 03:50:14.634 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:50:14.634 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:50:14.634 -07 000000480 INF: FPGA: Recv ZSGSRD 29352 17-03-18 03:50:14.644 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:50:14.644 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:50:14.644 -07 000000480 INF: FPGA: Recv ZSGSRD 29355 17-03-18 03:50:14.654 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-18 03:50:14.654 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:50:14.654 -07 000000501 INF: FPGA: Recv ZSGSRD 29354 17-03-18 03:50:14.664 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:50:14.664 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:50:14.664 -07 000000480 INF: FPGA: Recv ZSGSRD 29349 17-03-18 03:50:14.674 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:50:14.674 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:50:14.674 -07 000000480 INF: FPGA: Recv ZSGSRD 29358 17-03-18 03:50:14.684 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:50:14.684 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:50:14.684 -07 000000501 INF: FPGA: Recv ZSGSRD 29350 17-03-18 03:50:14.694 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:50:14.694 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:50:14.694 -07 000000501 INF: FPGA: Recv ZSGSRD 29356 17-03-18 03:50:14.704 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:50:14.704 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-18 03:50:14.704 -07 000000480 INF: FPGA: Recv ZPIEZORD 24820 17-03-18 03:50:14.714 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:50:14.714 -07 000000610 INF: Z Motor: Piezo is near 33.0 V (nominally 0 to 100 V), expect near 43.0 V, since DAC is at 4.297 V. Piezo Error = -9.9 V. 17-03-18 03:50:14.714 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.9 um, Read 10 ADC samples: Avg = 29354 (-128.1 uncal um), Error = 0.8 uncal um, Median = 29354 (-128.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29349 (-128.1 uncal um), Max = 29358 (-128.1 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um) 17-03-18 03:50:14.714 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29354, posNoise = 4, negNoise = 5 17-03-18 03:50:14.714 -07 000000610 INF: Z Motor: After move to -0.128899, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-18 03:50:14.714 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms) 17-03-18 03:50:14.714 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-18 03:50:14.714 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-18 03:50:14.714 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-18 03:50:14.714 -07 000000606 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-18 03:50:14.714 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start. 17-03-18 03:50:14.714 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-18 03:50:14.714 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start. 17-03-18 03:50:14.714 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) start. 17-03-18 03:50:14.714 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-18 03:50:14.714 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start. 17-03-18 03:50:14.714 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms. 17-03-18 03:50:14.714 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start. 17-03-18 03:50:14.724 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms. 17-03-18 03:50:14.724 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start. 17-03-18 03:50:14.724 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms. 17-03-18 03:50:14.724 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start. 17-03-18 03:50:14.734 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms. 17-03-18 03:50:14.734 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms. 17-03-18 03:50:14.734 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms. 17-03-18 03:50:14.734 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 23 ms. 17-03-18 03:50:14.744 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 411 411 198 198 28335 150\n [Camera] 17-03-18 03:50:14.934 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP turning red on 192 17-03-18 03:50:15.354 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 603 17-03-18 03:50:15.354 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 603 17-03-18 03:50:15.354 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-18 03:50:15.354 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 603 17-03-18 03:50:15.354 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 603 17-03-18 03:50:15.354 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-18 03:50:15.354 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-18 03:50:15.354 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 2169959960, 0x0, 391868352) start. 17-03-18 03:50:15.354 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-18 03:50:15.354 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 2205382224, 0x0, 418435064) start. 17-03-18 03:50:15.454 -07 000000382 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 117, FrontChillerTemperature: 3.979922, 17-03-18 03:50:15.544 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28335 796 17-03-18 03:50:15.694 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP turning grn on 946 17-03-18 03:50:15.754 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 2169959960, 0x0, 391868352) end. Duration was 395 ms. 17-03-18 03:50:15.754 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms. 17-03-18 03:50:15.754 -07 000000444 INF: Camera: CopyActivePixFullImage start. 17-03-18 03:50:15.754 -07 000000444 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-18 03:50:15.754 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms. 17-03-18 03:50:15.754 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 2205382224, 0x0, 418435064) end. Duration was 395 ms. 17-03-18 03:50:15.754 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms. 17-03-18 03:50:15.754 -07 000000561 INF: Camera: CopyActivePixFullImage start. 17-03-18 03:50:15.754 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-18 03:50:15.764 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms. 17-03-18 03:50:15.894 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1144 17-03-18 03:50:15.894 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1144 17-03-18 03:50:15.894 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-18 03:50:15.894 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-18 03:50:15.894 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) start. 17-03-18 03:50:15.894 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1144 17-03-18 03:50:15.894 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1144 17-03-18 03:50:15.894 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-18 03:50:15.894 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-18 03:50:15.894 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 2503642840, 0x0, 418435064) start. 17-03-18 03:50:16.084 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP 1337 17-03-18 03:50:16.084 -07 000000382 INF: FPGA: Recv CAMDBLSNAP 17-03-18 03:50:16.084 -07 000000610 INF: FPGA: 'CAMDBLSNAP 411 411 198 198 28335 150' command took 2 ms to send, 1333 ms to get response, and 1343 ms overall 17-03-18 03:50:16.084 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503 17-03-18 03:50:16.084 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 15 at Y-position 70.6884765625, Z-Position -0.128899675220386. ------ 17-03-18 03:50:16.084 -07 000000480 INF: Y Motor: MoveYZ optimized starting. Moving Y to 71.5326 mm, moving Z to -0.13556 mm 17-03-18 03:50:16.084 -07 000000480 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move 17-03-18 03:50:16.094 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-18 03:50:16.094 -07 000000444 INF: Z Motor: Entering MoveAbsStepped (DAC = 29613, sync = True, waitForSettling = False) 17-03-18 03:50:16.094 -07 000000444 INF: Z Motor: Moving to -0.135560 mm, started at -0.128900 mm, distance = -6.66 um 17-03-18 03:50:16.094 -07 000000382 INF: Y Motor: Entering MoveAbsStepped (target = 114452 steps, sync = True, waitForSettling = True) 17-03-18 03:50:16.094 -07 000000382 INF: Y Motor: Moving to 71.5326 mm, started at 70.6885 mm, delta = 0.8441 mm 17-03-18 03:50:16.094 -07 000000579 INF: FPGA: Recv FOCMRRCUR 17-03-18 03:50:16.104 -07 000000444 INF: FPGA: Xmit ZDACW 29613\n [Z Motor] 17-03-18 03:50:16.104 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 11 ms overall 17-03-18 03:50:16.104 -07 000000455 INF: FPGA: Recv ZDACW 17-03-18 03:50:16.114 -07 000000444 INF: FPGA: 'ZDACW 29613' command took 0 ms to send, 0 ms to get response, and 18 ms overall 17-03-18 03:50:16.114 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 03:50:16.114 -07 000000606 INF: FPGA: Recv YRDPOS 144771 17-03-18 03:50:16.124 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 28 ms overall 17-03-18 03:50:16.124 -07 000000382 INF: Y Motor: Encoder = 144771 = motor step 113102.3 = 70.6890 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 03:50:16.124 -07 000000501 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror] 17-03-18 03:50:16.124 -07 000000382 INF: Y Motor: Last commanded position = 70.7026 mm (113124.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True 17-03-18 03:50:16.124 -07 000000382 INF: Y Motor: Moving 1350 steps-29 17-03-18 03:50:16.134 -07 000000444 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-18 03:50:16.134 -07 000000606 INF: FPGA: Recv ZDACR 29613 17-03-18 03:50:16.144 -07 000000382 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor] 17-03-18 03:50:16.144 -07 000000444 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall 17-03-18 03:50:16.144 -07 000000444 INF: Z Motor: MoveAbsStepped took 49 ms (did NOT wait for settling yet)) 17-03-18 03:50:16.294 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) end. Duration was 401 ms. 17-03-18 03:50:16.294 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms. 17-03-18 03:50:16.294 -07 000000561 INF: Camera: CopyActivePixFullImage start. 17-03-18 03:50:16.294 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 2503642840, 0x0, 418435064) end. Duration was 399 ms. 17-03-18 03:50:16.294 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms. 17-03-18 03:50:16.294 -07 000000012 INF: Camera: CopyActivePixFullImage start. 17-03-18 03:50:16.304 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-18 03:50:16.304 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms. 17-03-18 03:50:16.304 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms. 17-03-18 03:50:16.304 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms. 17-03-18 03:50:16.324 -07 000000444 INF: FPGA: Recv FOCMRRFOC 17-03-18 03:50:16.324 -07 000000501 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 197 ms to get response, and 227 ms overall 17-03-18 03:50:16.514 -07 000000569 INF: FPGA: Recv YMVTILE 17-03-18 03:50:16.514 -07 000000382 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 393 ms overall 17-03-18 03:50:16.564 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 03:50:16.564 -07 000000626 INF: FPGA: Recv YRDPOS 146471 17-03-18 03:50:16.574 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall 17-03-18 03:50:16.574 -07 000000382 INF: Y Motor: Encoder = 146471 = motor step 114430.5 = 71.5190 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 03:50:16.574 -07 000000382 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm) 17-03-18 03:50:16.574 -07 000000382 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 393 ms, distance = 0.844 mm, average velocity = 2.148 mm/sec 17-03-18 03:50:16.614 -07 000000569 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-18 03:50:16.614 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 116. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1683, R2=1752, Total=3435. Warn if over 250 bubbles per interval. 17-03-18 03:50:17.524 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 03:50:17.524 -07 000000461 INF: FPGA: Recv YRDPOS 146471 17-03-18 03:50:17.534 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-18 03:50:17.534 -07 000000382 INF: Y Motor: Encoder = 146471 = motor step 114430.5 = 71.5190 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 03:50:17.564 -07 000000382 INF: Y Motor: After move to 71.532608, error = -0.013565, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm 17-03-18 03:50:17.564 -07 000000382 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm) 17-03-18 03:50:17.564 -07 000000382 INF: Y Motor: Moved to 71.5190 after 1470 ms (table move) 17-03-18 03:50:17.564 -07 000000480 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135560 mm (DAC = 29613) 17-03-18 03:50:17.564 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:50:17.564 -07 000000444 INF: FPGA: Recv ZSGSRD 30389 17-03-18 03:50:17.574 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall 17-03-18 03:50:17.574 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:50:17.574 -07 000000626 INF: FPGA: Recv ZSGSRD 30388 17-03-18 03:50:17.584 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:50:17.584 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:50:17.584 -07 000000438 INF: FPGA: Recv ZSGSRD 30391 17-03-18 03:50:17.594 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall 17-03-18 03:50:17.594 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:50:17.594 -07 000000579 INF: FPGA: Recv ZSGSRD 30396 17-03-18 03:50:17.604 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:50:17.604 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:50:17.604 -07 000000569 INF: FPGA: Recv ZSGSRD 30393 17-03-18 03:50:17.614 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:50:17.614 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:50:17.614 -07 000000438 INF: FPGA: Recv ZSGSRD 30395 17-03-18 03:50:17.624 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:50:17.624 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:50:17.624 -07 000000561 INF: FPGA: Recv ZSGSRD 30394 17-03-18 03:50:17.634 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:50:17.634 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:50:17.634 -07 000000569 INF: FPGA: Recv ZSGSRD 30394 17-03-18 03:50:17.644 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:50:17.644 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:50:17.644 -07 000000561 INF: FPGA: Recv ZSGSRD 30390 17-03-18 03:50:17.654 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:50:17.654 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:50:17.654 -07 000000438 INF: FPGA: Recv ZSGSRD 30389 17-03-18 03:50:17.664 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:50:17.664 -07 000000480 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-18 03:50:17.664 -07 000000579 INF: FPGA: Recv ZPIEZORD 26208 17-03-18 03:50:17.674 -07 000000480 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:50:17.674 -07 000000480 INF: Z Motor: Piezo is near 36.0 V (nominally 0 to 100 V), expect near 45.2 V, since DAC is at 4.519 V. Piezo Error = -9.2 V. 17-03-18 03:50:17.674 -07 000000480 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.6 um, Read 10 ADC samples: Avg = 30392 (-134.8 uncal um), Error = 0.8 uncal um, Median = 30392 (-134.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 30388 (-134.8 uncal um), Max = 30396 (-134.8 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um) 17-03-18 03:50:17.674 -07 000000480 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30392, posNoise = 4, negNoise = 4 17-03-18 03:50:17.674 -07 000000480 INF: Z Motor: After move to -0.135560, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-18 03:50:17.674 -07 000000480 INF: Z Motor: Settle wait time = 1474 ms, measure time = 105 ms (allowed 150 ms), total time = 1579 ms 17-03-18 03:50:17.674 -07 000000480 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms 17-03-18 03:50:17.724 -07 000000480 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1631 ms 17-03-18 03:50:17.724 -07 000000480 INF: Y Motor: Restored settling times back to 3000 or 1100 ms 17-03-18 03:50:17.724 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-18 03:50:17.724 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-18 03:50:17.724 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-18 03:50:17.724 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-18 03:50:17.724 -07 000000455 INF: Disarm and arm camera sensor 0: ROITrigger start. 17-03-18 03:50:17.724 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-18 03:50:17.724 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms. 17-03-18 03:50:17.724 -07 000000455 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start. 17-03-18 03:50:17.734 -07 000000455 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms. 17-03-18 03:50:17.734 -07 000000455 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start. 17-03-18 03:50:17.734 -07 000000455 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms. 17-03-18 03:50:17.734 -07 000000455 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 13 ms. 17-03-18 03:50:17.744 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera] 17-03-18 03:50:17.784 -07 000000579 INF: FPGA: Recv @CAMSNAP turning led on 40 17-03-18 03:50:18.084 -07 000000606 INF: FPGA: Recv @CAMSNAP img rdy 340 17-03-18 03:50:18.084 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340 17-03-18 03:50:18.084 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start. 17-03-18 03:50:18.214 -07 000000579 INF: FPGA: Recv @CAMSNAP 380 17-03-18 03:50:18.214 -07 000000579 INF: FPGA: Recv CAMSNAP 17-03-18 03:50:18.214 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2240804488, 0x0, 559484976) start. 17-03-18 03:50:18.214 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 460 ms to get response, and 468 ms overall 17-03-18 03:50:18.324 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2240804488, 0x0, 559484976) end. Duration was 115 ms. 17-03-18 03:50:18.324 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-18 03:50:18.324 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms. 17-03-18 03:50:18.324 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 240 ms. 17-03-18 03:50:18.414 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-18 03:50:18.414 -07 000000561 INF: Autofocus start 17-03-18 03:50:18.414 -07 000000561 INF: MeasureProfile start 17-03-18 03:50:18.414 -07 000000579 INF: FPGA: Recv FOCMRRCUR 17-03-18 03:50:18.424 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall 17-03-18 03:50:18.424 -07 000000569 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror] 17-03-18 03:50:18.434 -07 000000561 INF: MeasureProfile done 17-03-18 03:50:18.434 -07 000000561 INF: X=0 Z correction [um]=-0.02394831 17-03-18 03:50:18.434 -07 000000561 INF: Autofocus finished 17-03-18 03:50:18.624 -07 000000579 INF: FPGA: Recv FOCMRRIMG 17-03-18 03:50:18.624 -07 000000569 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 196 ms to get response, and 205 ms overall 17-03-18 03:50:18.634 -07 000000610 INF: ------------ Scan Snapping tile 15 at Y-position 71.51904296875, Z-position -0.135568007423534. ---------- 17-03-18 03:50:18.634 -07 000000610 INF: Cycle 117 Tile 15 Exposure Settings A 411 G 198 T 198 C 411 17-03-18 03:50:18.634 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28120, sync = True, waitForSettling = True) 17-03-18 03:50:18.634 -07 000000610 INF: Z Motor: Moving to -0.128725 mm, started at -0.135568 mm, distance = 6.84 um 17-03-18 03:50:18.634 -07 000000610 INF: FPGA: Xmit ZDACW 28120\n [Z Motor] 17-03-18 03:50:18.634 -07 000000561 INF: FPGA: Recv ZDACW 17-03-18 03:50:18.644 -07 000000610 INF: FPGA: 'ZDACW 28120' command took 0 ms to send, 0 ms to get response, and 7 ms overall 17-03-18 03:50:18.644 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-18 03:50:18.644 -07 000000382 INF: FPGA: Recv ZDACR 28120 17-03-18 03:50:18.654 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:50:18.654 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-18 03:50:18.804 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:50:18.804 -07 000000561 INF: FPGA: Recv ZSGSRD 29333 17-03-18 03:50:18.814 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-18 03:50:18.814 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:50:18.814 -07 000000480 INF: FPGA: Recv ZSGSRD 29331 17-03-18 03:50:18.824 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:50:18.824 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:50:18.824 -07 000000461 INF: FPGA: Recv ZSGSRD 29325 17-03-18 03:50:18.834 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:50:18.834 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:50:18.834 -07 000000382 INF: FPGA: Recv ZSGSRD 29324 17-03-18 03:50:18.844 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:50:18.844 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:50:18.844 -07 000000569 INF: FPGA: Recv ZSGSRD 29330 17-03-18 03:50:18.854 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:50:18.854 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:50:18.854 -07 000000501 INF: FPGA: Recv ZSGSRD 29332 17-03-18 03:50:18.864 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:50:18.864 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:50:18.864 -07 000000569 INF: FPGA: Recv ZSGSRD 29332 17-03-18 03:50:18.874 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:50:18.874 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:50:18.874 -07 000000626 INF: FPGA: Recv ZSGSRD 29325 17-03-18 03:50:18.884 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:50:18.884 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:50:18.884 -07 000000444 INF: FPGA: Recv ZSGSRD 29328 17-03-18 03:50:18.894 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:50:18.894 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:50:18.894 -07 000000561 INF: FPGA: Recv ZSGSRD 29327 17-03-18 03:50:18.904 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:50:18.904 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-18 03:50:18.904 -07 000000444 INF: FPGA: Recv ZPIEZORD 24793 17-03-18 03:50:18.914 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:50:18.914 -07 000000610 INF: Z Motor: Piezo is near 33.0 V (nominally 0 to 100 V), expect near 42.9 V, since DAC is at 4.291 V. Piezo Error = -9.9 V. 17-03-18 03:50:18.914 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.7 um, Read 10 ADC samples: Avg = 29329 (-128.0 uncal um), Error = 0.8 uncal um, Median = 29329 (-128.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29324 (-127.9 uncal um), Max = 29333 (-128.0 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um) 17-03-18 03:50:18.914 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29329, posNoise = 4, negNoise = 5 17-03-18 03:50:18.914 -07 000000610 INF: Z Motor: After move to -0.128725, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-18 03:50:18.914 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms) 17-03-18 03:50:18.914 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-18 03:50:18.914 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-18 03:50:18.914 -07 000000444 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-18 03:50:18.914 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-18 03:50:18.914 -07 000000455 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start. 17-03-18 03:50:18.914 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-18 03:50:18.914 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start. 17-03-18 03:50:18.914 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) start. 17-03-18 03:50:18.914 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-18 03:50:18.914 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start. 17-03-18 03:50:18.914 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms. 17-03-18 03:50:18.914 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start. 17-03-18 03:50:18.924 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms. 17-03-18 03:50:18.924 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start. 17-03-18 03:50:18.924 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms. 17-03-18 03:50:18.924 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start. 17-03-18 03:50:18.934 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms. 17-03-18 03:50:18.934 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms. 17-03-18 03:50:18.934 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms. 17-03-18 03:50:18.934 -07 000000455 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms. 17-03-18 03:50:18.934 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 411 411 198 198 28297 150\n [Camera] 17-03-18 03:50:19.144 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP turning red on 195 17-03-18 03:50:19.554 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 603 17-03-18 03:50:19.554 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 603 17-03-18 03:50:19.554 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-18 03:50:19.554 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 603 17-03-18 03:50:19.554 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 603 17-03-18 03:50:19.554 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-18 03:50:19.554 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-18 03:50:19.554 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2165554656, 0x0, 391868352) start. 17-03-18 03:50:19.554 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-18 03:50:19.564 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 2200976920, 0x0, 418435064) start. 17-03-18 03:50:19.744 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28297 796 17-03-18 03:50:19.894 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning grn on 946 17-03-18 03:50:19.944 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 2200976920, 0x0, 418435064) end. Duration was 386 ms. 17-03-18 03:50:19.944 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 386 ms. 17-03-18 03:50:19.944 -07 000000561 INF: Camera: CopyActivePixFullImage start. 17-03-18 03:50:19.954 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-18 03:50:19.954 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2165554656, 0x0, 391868352) end. Duration was 394 ms. 17-03-18 03:50:19.954 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms. 17-03-18 03:50:19.954 -07 000000569 INF: Camera: CopyActivePixFullImage start. 17-03-18 03:50:19.954 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-18 03:50:19.954 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms. 17-03-18 03:50:19.954 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 402 ms. 17-03-18 03:50:20.094 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1144 17-03-18 03:50:20.094 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1144 17-03-18 03:50:20.094 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-18 03:50:20.094 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1144 17-03-18 03:50:20.094 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1144 17-03-18 03:50:20.094 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-18 03:50:20.094 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-18 03:50:20.094 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-18 03:50:20.094 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start. 17-03-18 03:50:20.094 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 2503642840, 0x0, 418435064) start. 17-03-18 03:50:20.284 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP 1336 17-03-18 03:50:20.284 -07 000000569 INF: FPGA: Recv CAMDBLSNAP 17-03-18 03:50:20.284 -07 000000610 INF: FPGA: 'CAMDBLSNAP 411 411 198 198 28297 150' command took 2 ms to send, 1333 ms to get response, and 1343 ms overall 17-03-18 03:50:20.284 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503 17-03-18 03:50:20.284 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 16 at Y-position 71.51904296875, Z-Position -0.128739069916842. ------ 17-03-18 03:50:20.404 -07 000000444 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-18 03:50:20.404 -07 000000501 INF: Y Motor: MoveYZ optimized starting. Moving Y to 72.3626 mm, moving Z to -0.13507 mm 17-03-18 03:50:20.404 -07 000000501 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move 17-03-18 03:50:20.404 -07 000000461 INF: FPGA: Recv FOCMRRCUR 17-03-18 03:50:20.404 -07 000000626 INF: Y Motor: Entering MoveAbsStepped (target = 115780 steps, sync = True, waitForSettling = True) 17-03-18 03:50:20.404 -07 000000626 INF: Y Motor: Moving to 72.3626 mm, started at 71.5190 mm, delta = 0.8436 mm 17-03-18 03:50:20.404 -07 000000569 INF: Z Motor: Entering MoveAbsStepped (DAC = 29505, sync = True, waitForSettling = False) 17-03-18 03:50:20.404 -07 000000569 INF: Z Motor: Moving to -0.135065 mm, started at -0.128739 mm, distance = -6.33 um 17-03-18 03:50:20.414 -07 000000444 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:50:20.414 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 03:50:20.414 -07 000000561 INF: FPGA: Recv YRDPOS 146471 17-03-18 03:50:20.424 -07 000000569 INF: FPGA: Xmit ZDACW 29505\n [Z Motor] 17-03-18 03:50:20.424 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 15 ms overall 17-03-18 03:50:20.424 -07 000000626 INF: Y Motor: Encoder = 146471 = motor step 114430.5 = 71.5190 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 03:50:20.424 -07 000000626 INF: Y Motor: Last commanded position = 71.5326 mm (114452.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True 17-03-18 03:50:20.424 -07 000000626 INF: Y Motor: Moving 1350 steps-28 17-03-18 03:50:20.424 -07 000000561 INF: FPGA: Recv ZDACW 17-03-18 03:50:20.434 -07 000000569 INF: FPGA: 'ZDACW 29505' command took 0 ms to send, 0 ms to get response, and 25 ms overall 17-03-18 03:50:20.434 -07 000000444 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror] 17-03-18 03:50:20.444 -07 000000626 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor] 17-03-18 03:50:20.454 -07 000000569 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-18 03:50:20.454 -07 000000561 INF: FPGA: Recv ZDACR 29505 17-03-18 03:50:20.464 -07 000000569 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall 17-03-18 03:50:20.464 -07 000000569 INF: Z Motor: MoveAbsStepped took 55 ms (did NOT wait for settling yet)) 17-03-18 03:50:20.484 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 390 ms. 17-03-18 03:50:20.484 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms. 17-03-18 03:50:20.484 -07 000000438 INF: Camera: CopyActivePixFullImage start. 17-03-18 03:50:20.494 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 2503642840, 0x0, 418435064) end. Duration was 392 ms. 17-03-18 03:50:20.494 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 392 ms. 17-03-18 03:50:20.494 -07 000000455 INF: Camera: CopyActivePixFullImage start. 17-03-18 03:50:20.494 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-18 03:50:20.494 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 401 ms. 17-03-18 03:50:20.494 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-18 03:50:20.504 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 404 ms. 17-03-18 03:50:20.634 -07 000000569 INF: FPGA: Recv FOCMRRFOC 17-03-18 03:50:20.634 -07 000000444 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 222 ms overall 17-03-18 03:50:20.814 -07 000000561 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 117, FrontChillerTemperature: 4.016692, 17-03-18 03:50:20.814 -07 000000455 INF: FPGA: Recv YMVTILE 17-03-18 03:50:20.814 -07 000000626 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall 17-03-18 03:50:20.864 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 03:50:20.864 -07 000000444 INF: FPGA: Recv YRDPOS 148172 17-03-18 03:50:20.874 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall 17-03-18 03:50:20.874 -07 000000626 INF: Y Motor: Encoder = 148172 = motor step 115759.4 = 72.3496 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 03:50:20.874 -07 000000626 INF: Y Motor: Position error before settling (table move) = -27 encoder counts (-0.013 mm) 17-03-18 03:50:20.874 -07 000000626 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.844 mm, average velocity = 2.125 mm/sec 17-03-18 03:50:21.614 -07 000000561 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-18 03:50:21.614 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 116. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1683, R2=1752, Total=3435. Warn if over 250 bubbles per interval. 17-03-18 03:50:21.824 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 03:50:21.824 -07 000000438 INF: FPGA: Recv YRDPOS 148172 17-03-18 03:50:21.834 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:50:21.834 -07 000000626 INF: Y Motor: Encoder = 148172 = motor step 115759.4 = 72.3496 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 03:50:21.864 -07 000000626 INF: Y Motor: After move to 72.362610, error = -0.013000, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm 17-03-18 03:50:21.864 -07 000000626 INF: Y Motor: Position error after settling (table move) = -27 encoder counts (-0.013 mm), Delta during settling = 0 counts (0.000 mm) 17-03-18 03:50:21.864 -07 000000626 INF: Y Motor: Moved to 72.3496 after 1456 ms (table move) 17-03-18 03:50:21.864 -07 000000501 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135065 mm (DAC = 29505) 17-03-18 03:50:21.864 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:50:21.864 -07 000000569 INF: FPGA: Recv ZSGSRD 30319 17-03-18 03:50:21.874 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall 17-03-18 03:50:21.874 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:50:21.874 -07 000000455 INF: FPGA: Recv ZSGSRD 30308 17-03-18 03:50:21.884 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:50:21.884 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:50:21.884 -07 000000626 INF: FPGA: Recv ZSGSRD 30315 17-03-18 03:50:21.894 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:50:21.894 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:50:21.894 -07 000000561 INF: FPGA: Recv ZSGSRD 30312 17-03-18 03:50:21.904 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:50:21.904 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:50:21.904 -07 000000461 INF: FPGA: Recv ZSGSRD 30320 17-03-18 03:50:21.914 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:50:21.914 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:50:21.914 -07 000000569 INF: FPGA: Recv ZSGSRD 30314 17-03-18 03:50:21.924 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:50:21.924 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:50:21.924 -07 000000461 INF: FPGA: Recv ZSGSRD 30316 17-03-18 03:50:21.934 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:50:21.934 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:50:21.934 -07 000000561 INF: FPGA: Recv ZSGSRD 30310 17-03-18 03:50:21.944 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:50:21.944 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:50:21.944 -07 000000461 INF: FPGA: Recv ZSGSRD 30307 17-03-18 03:50:21.954 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:50:21.954 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:50:21.954 -07 000000438 INF: FPGA: Recv ZSGSRD 30316 17-03-18 03:50:21.964 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:50:21.964 -07 000000501 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-18 03:50:21.964 -07 000000626 INF: FPGA: Recv ZPIEZORD 26113 17-03-18 03:50:21.974 -07 000000501 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:50:21.974 -07 000000501 INF: Z Motor: Piezo is near 35.8 V (nominally 0 to 100 V), expect near 45.0 V, since DAC is at 4.502 V. Piezo Error = -9.2 V. 17-03-18 03:50:21.974 -07 000000501 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.1 um, Read 10 ADC samples: Avg = 30314 (-134.3 uncal um), Error = 0.8 uncal um, Median = 30314 (-134.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 30307 (-134.2 uncal um), Max = 30320 (-134.3 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um) 17-03-18 03:50:21.974 -07 000000501 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30314, posNoise = 6, negNoise = 7 17-03-18 03:50:21.974 -07 000000501 INF: Z Motor: After move to -0.135065, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-18 03:50:21.974 -07 000000501 INF: Z Motor: Settle wait time = 1459 ms, measure time = 107 ms (allowed 150 ms), total time = 1566 ms 17-03-18 03:50:21.974 -07 000000501 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms 17-03-18 03:50:22.024 -07 000000501 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1619 ms 17-03-18 03:50:22.024 -07 000000501 INF: Y Motor: Restored settling times back to 3000 or 1100 ms 17-03-18 03:50:22.024 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-18 03:50:22.024 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-18 03:50:22.024 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-18 03:50:22.024 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger start. 17-03-18 03:50:22.024 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-18 03:50:22.024 -07 000000455 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-18 03:50:22.034 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms. 17-03-18 03:50:22.034 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start. 17-03-18 03:50:22.034 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms. 17-03-18 03:50:22.034 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start. 17-03-18 03:50:22.044 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms. 17-03-18 03:50:22.044 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms. 17-03-18 03:50:22.044 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera] 17-03-18 03:50:22.094 -07 000000569 INF: FPGA: Recv @CAMSNAP turning led on 40 17-03-18 03:50:22.394 -07 000000561 INF: FPGA: Recv @CAMSNAP img rdy 340 17-03-18 03:50:22.394 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340 17-03-18 03:50:22.394 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start. 17-03-18 03:50:22.394 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start. 17-03-18 03:50:22.424 -07 000000444 INF: FPGA: Recv @CAMSNAP 380 17-03-18 03:50:22.434 -07 000000455 INF: FPGA: Recv CAMSNAP 17-03-18 03:50:22.434 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 380 ms to get response, and 384 ms overall 17-03-18 03:50:22.514 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 122 ms. 17-03-18 03:50:22.514 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-18 03:50:22.514 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms. 17-03-18 03:50:22.514 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 126 ms. 17-03-18 03:50:22.534 -07 000000438 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-18 03:50:22.534 -07 000000444 INF: Autofocus start 17-03-18 03:50:22.534 -07 000000444 INF: MeasureProfile start 17-03-18 03:50:22.534 -07 000000569 INF: FPGA: Recv FOCMRRCUR 17-03-18 03:50:22.544 -07 000000438 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall 17-03-18 03:50:22.544 -07 000000438 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror] 17-03-18 03:50:22.554 -07 000000444 INF: MeasureProfile done 17-03-18 03:50:22.554 -07 000000444 INF: X=16 Z correction [um]=0.0530179 17-03-18 03:50:22.554 -07 000000444 INF: Autofocus finished 17-03-18 03:50:22.744 -07 000000455 INF: FPGA: Recv FOCMRRIMG 17-03-18 03:50:22.744 -07 000000438 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall 17-03-18 03:50:22.744 -07 000000610 INF: ------------ Scan Snapping tile 16 at Y-position 72.349609375, Z-position -0.135066918876477. ---------- 17-03-18 03:50:22.744 -07 000000610 INF: Cycle 117 Tile 16 Exposure Settings A 411 G 198 T 198 C 411 17-03-18 03:50:22.754 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28029, sync = True, waitForSettling = True) 17-03-18 03:50:22.754 -07 000000610 INF: Z Motor: Moving to -0.128309 mm, started at -0.135067 mm, distance = 6.76 um 17-03-18 03:50:22.754 -07 000000610 INF: FPGA: Xmit ZDACW 28029\n [Z Motor] 17-03-18 03:50:22.754 -07 000000455 INF: FPGA: Recv ZDACW 17-03-18 03:50:22.764 -07 000000610 INF: FPGA: 'ZDACW 28029' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:50:22.764 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-18 03:50:22.764 -07 000000444 INF: FPGA: Recv ZDACR 28029 17-03-18 03:50:22.774 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:50:22.774 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-18 03:50:22.924 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:50:22.924 -07 000000455 INF: FPGA: Recv ZSGSRD 29265 17-03-18 03:50:22.934 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-18 03:50:22.934 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:50:22.934 -07 000000461 INF: FPGA: Recv ZSGSRD 29265 17-03-18 03:50:22.944 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:50:22.944 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:50:22.944 -07 000000569 INF: FPGA: Recv ZSGSRD 29264 17-03-18 03:50:22.954 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:50:22.954 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:50:22.954 -07 000000501 INF: FPGA: Recv ZSGSRD 29261 17-03-18 03:50:22.964 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:50:22.964 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:50:22.964 -07 000000455 INF: FPGA: Recv ZSGSRD 29264 17-03-18 03:50:22.974 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:50:22.974 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:50:22.974 -07 000000438 INF: FPGA: Recv ZSGSRD 29264 17-03-18 03:50:22.984 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:50:22.984 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:50:22.984 -07 000000461 INF: FPGA: Recv ZSGSRD 29262 17-03-18 03:50:22.994 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:50:22.994 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:50:22.994 -07 000000569 INF: FPGA: Recv ZSGSRD 29264 17-03-18 03:50:23.004 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:50:23.004 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:50:23.004 -07 000000461 INF: FPGA: Recv ZSGSRD 29265 17-03-18 03:50:23.014 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:50:23.014 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:50:23.014 -07 000000444 INF: FPGA: Recv ZSGSRD 29267 17-03-18 03:50:23.024 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:50:23.024 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-18 03:50:23.024 -07 000000561 INF: FPGA: Recv ZPIEZORD 24710 17-03-18 03:50:23.034 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:50:23.034 -07 000000610 INF: Z Motor: Piezo is near 32.8 V (nominally 0 to 100 V), expect near 42.8 V, since DAC is at 4.277 V. Piezo Error = -10.0 V. 17-03-18 03:50:23.034 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.3 um, Read 10 ADC samples: Avg = 29264 (-127.5 uncal um), Error = 0.8 uncal um, Median = 29264 (-127.5 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 29261 (-127.5 uncal um), Max = 29267 (-127.6 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um) 17-03-18 03:50:23.034 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29264, posNoise = 3, negNoise = 3 17-03-18 03:50:23.034 -07 000000610 INF: Z Motor: After move to -0.128309, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-18 03:50:23.034 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms) 17-03-18 03:50:23.034 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-18 03:50:23.034 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-18 03:50:23.034 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-18 03:50:23.034 -07 000000444 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-18 03:50:23.034 -07 000000438 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start. 17-03-18 03:50:23.034 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-18 03:50:23.034 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start. 17-03-18 03:50:23.034 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) start. 17-03-18 03:50:23.034 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms. 17-03-18 03:50:23.034 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start. 17-03-18 03:50:23.034 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-18 03:50:23.034 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start. 17-03-18 03:50:23.034 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms. 17-03-18 03:50:23.034 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start. 17-03-18 03:50:23.034 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms. 17-03-18 03:50:23.044 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start. 17-03-18 03:50:23.044 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms. 17-03-18 03:50:23.044 -07 000000438 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms. 17-03-18 03:50:23.054 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms. 17-03-18 03:50:23.054 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms. 17-03-18 03:50:23.054 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 411 411 198 198 28206 150\n [Camera] 17-03-18 03:50:23.254 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning red on 192 17-03-18 03:50:23.664 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 603 17-03-18 03:50:23.664 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 603 17-03-18 03:50:23.664 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-18 03:50:23.664 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 603 17-03-18 03:50:23.664 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 603 17-03-18 03:50:23.664 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-18 03:50:23.674 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-18 03:50:23.674 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 2165554656, 0x0, 391868352) start. 17-03-18 03:50:23.674 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-18 03:50:23.674 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 2200976920, 0x0, 418435064) start. 17-03-18 03:50:23.854 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28206 796 17-03-18 03:50:24.004 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning grn on 946 17-03-18 03:50:24.064 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 2165554656, 0x0, 391868352) end. Duration was 395 ms. 17-03-18 03:50:24.064 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms. 17-03-18 03:50:24.064 -07 000000438 INF: Camera: CopyActivePixFullImage start. 17-03-18 03:50:24.064 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-18 03:50:24.064 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms. 17-03-18 03:50:24.074 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 2200976920, 0x0, 418435064) end. Duration was 396 ms. 17-03-18 03:50:24.074 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms. 17-03-18 03:50:24.074 -07 000000455 INF: Camera: CopyActivePixFullImage start. 17-03-18 03:50:24.074 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-18 03:50:24.084 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms. 17-03-18 03:50:24.204 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1144 17-03-18 03:50:24.204 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1144 17-03-18 03:50:24.204 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-18 03:50:24.204 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1144 17-03-18 03:50:24.204 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1144 17-03-18 03:50:24.214 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-18 03:50:24.214 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-18 03:50:24.214 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start. 17-03-18 03:50:24.214 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-18 03:50:24.214 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 2468220576, 0x0, 391868352) start. 17-03-18 03:50:24.404 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP 1340 17-03-18 03:50:24.404 -07 000000438 INF: FPGA: Recv CAMDBLSNAP 17-03-18 03:50:24.404 -07 000000610 INF: FPGA: 'CAMDBLSNAP 411 411 198 198 28206 150' command took 2 ms to send, 1341 ms to get response, and 1347 ms overall 17-03-18 03:50:24.404 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503 17-03-18 03:50:24.404 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 17 at Y-position 72.349609375, Z-Position -0.128321496127628. ------ 17-03-18 03:50:24.404 -07 000000461 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-18 03:50:24.404 -07 000000438 INF: Y Motor: MoveYZ optimized starting. Moving Y to 73.1926 mm, moving Z to -0.13487 mm 17-03-18 03:50:24.404 -07 000000438 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move 17-03-18 03:50:24.414 -07 000000569 INF: Y Motor: Entering MoveAbsStepped (target = 117108 steps, sync = True, waitForSettling = True) 17-03-18 03:50:24.414 -07 000000569 INF: Y Motor: Moving to 73.1926 mm, started at 72.3496 mm, delta = 0.8430 mm 17-03-18 03:50:24.414 -07 000000561 INF: FPGA: Recv FOCMRRCUR 17-03-18 03:50:24.414 -07 000000501 INF: Z Motor: Entering MoveAbsStepped (DAC = 29463, sync = True, waitForSettling = False) 17-03-18 03:50:24.414 -07 000000461 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall 17-03-18 03:50:24.414 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 03:50:24.414 -07 000000501 INF: Z Motor: Moving to -0.134873 mm, started at -0.128321 mm, distance = -6.55 um 17-03-18 03:50:24.414 -07 000000561 INF: FPGA: Recv YRDPOS 148173 17-03-18 03:50:24.424 -07 000000461 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror] 17-03-18 03:50:24.424 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall 17-03-18 03:50:24.424 -07 000000569 INF: Y Motor: Encoder = 148173 = motor step 115760.2 = 72.3501 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 03:50:24.434 -07 000000501 INF: FPGA: Xmit ZDACW 29463\n [Z Motor] 17-03-18 03:50:24.434 -07 000000569 INF: Y Motor: Last commanded position = 72.3626 mm (115780.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True 17-03-18 03:50:24.434 -07 000000569 INF: Y Motor: Moving 1348 steps-27 17-03-18 03:50:24.434 -07 000000480 INF: FPGA: Recv ZDACW 17-03-18 03:50:24.444 -07 000000501 INF: FPGA: 'ZDACW 29463' command took 0 ms to send, 0 ms to get response, and 27 ms overall 17-03-18 03:50:24.444 -07 000000569 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor] 17-03-18 03:50:24.454 -07 000000501 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-18 03:50:24.454 -07 000000626 INF: FPGA: Recv ZDACR 29463 17-03-18 03:50:24.464 -07 000000501 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall 17-03-18 03:50:24.464 -07 000000501 INF: Z Motor: MoveAbsStepped took 48 ms (did NOT wait for settling yet)) 17-03-18 03:50:24.604 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 397 ms. 17-03-18 03:50:24.604 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms. 17-03-18 03:50:24.604 -07 000000455 INF: Camera: CopyActivePixFullImage start. 17-03-18 03:50:24.614 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 2468220576, 0x0, 391868352) end. Duration was 393 ms. 17-03-18 03:50:24.614 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms. 17-03-18 03:50:24.614 -07 000000444 INF: Camera: CopyActivePixFullImage start. 17-03-18 03:50:24.614 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-18 03:50:24.614 -07 000000444 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-18 03:50:24.614 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms. 17-03-18 03:50:24.614 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 408 ms. 17-03-18 03:50:24.624 -07 000000467 INF: FPGA: Recv FOCMRRFOC 17-03-18 03:50:24.624 -07 000000461 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 210 ms overall 17-03-18 03:50:24.814 -07 000000626 INF: FPGA: Recv YMVTILE 17-03-18 03:50:24.814 -07 000000569 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall 17-03-18 03:50:24.864 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 03:50:24.864 -07 000000626 INF: FPGA: Recv YRDPOS 149865 17-03-18 03:50:24.874 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall 17-03-18 03:50:24.874 -07 000000569 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 03:50:24.874 -07 000000569 INF: Y Motor: Position error before settling (table move) = -33 encoder counts (-0.016 mm) 17-03-18 03:50:24.874 -07 000000569 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.843 mm, average velocity = 2.173 mm/sec 17-03-18 03:50:25.824 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 03:50:25.824 -07 000000461 INF: FPGA: Recv YRDPOS 149865 17-03-18 03:50:25.834 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-18 03:50:25.834 -07 000000569 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 03:50:25.864 -07 000000569 INF: Y Motor: After move to 73.192604, error = -0.016335, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm 17-03-18 03:50:25.864 -07 000000569 INF: Y Motor: Position error after settling (table move) = -33 encoder counts (-0.016 mm), Delta during settling = 0 counts (0.000 mm) 17-03-18 03:50:25.864 -07 000000569 INF: Y Motor: Moved to 73.1763 after 1449 ms (table move) 17-03-18 03:50:25.864 -07 000000438 INF: Z Motor: EndOfMoveAbsStepped: target = -0.134873 mm (DAC = 29463) 17-03-18 03:50:25.874 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:50:25.874 -07 000000444 INF: FPGA: Recv ZSGSRD 30281 17-03-18 03:50:25.884 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:50:25.884 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:50:25.884 -07 000000569 INF: FPGA: Recv ZSGSRD 30286 17-03-18 03:50:25.894 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:50:25.894 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:50:25.894 -07 000000444 INF: FPGA: Recv ZSGSRD 30287 17-03-18 03:50:25.904 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:50:25.904 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:50:25.904 -07 000000461 INF: FPGA: Recv ZSGSRD 30294 17-03-18 03:50:25.914 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:50:25.914 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:50:25.914 -07 000000569 INF: FPGA: Recv ZSGSRD 30289 17-03-18 03:50:25.924 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:50:25.924 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:50:25.924 -07 000000461 INF: FPGA: Recv ZSGSRD 30285 17-03-18 03:50:25.934 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:50:25.934 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:50:25.934 -07 000000626 INF: FPGA: Recv ZSGSRD 30286 17-03-18 03:50:25.944 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall 17-03-18 03:50:25.944 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:50:25.944 -07 000000561 INF: FPGA: Recv ZSGSRD 30282 17-03-18 03:50:25.954 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:50:25.954 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:50:25.954 -07 000000626 INF: FPGA: Recv ZSGSRD 30282 17-03-18 03:50:25.964 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:50:25.964 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:50:25.964 -07 000000561 INF: FPGA: Recv ZSGSRD 30283 17-03-18 03:50:25.974 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:50:25.974 -07 000000438 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-18 03:50:25.974 -07 000000626 INF: FPGA: Recv ZPIEZORD 26082 17-03-18 03:50:25.984 -07 000000438 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:50:25.984 -07 000000438 INF: Z Motor: Piezo is near 35.7 V (nominally 0 to 100 V), expect near 45.0 V, since DAC is at 4.496 V. Piezo Error = -9.2 V. 17-03-18 03:50:25.984 -07 000000438 INF: Z Motor: ReadAdcAverage: Commanded Z = -134.9 um, Read 10 ADC samples: Avg = 30286 (-134.1 uncal um), Error = 0.8 uncal um, Median = 30286 (-134.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 30281 (-134.1 uncal um), Max = 30294 (-134.1 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um) 17-03-18 03:50:25.984 -07 000000438 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30286, posNoise = 8, negNoise = 5 17-03-18 03:50:25.984 -07 000000438 INF: Z Motor: After move to -0.134873, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-18 03:50:25.984 -07 000000438 INF: Z Motor: Settle wait time = 1458 ms, measure time = 111 ms (allowed 150 ms), total time = 1569 ms 17-03-18 03:50:25.984 -07 000000438 INF: Z Motor: Waiting extra 39 ms after reading position to reach expected total of 150 ms 17-03-18 03:50:26.024 -07 000000438 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1611 ms 17-03-18 03:50:26.024 -07 000000438 INF: Y Motor: Restored settling times back to 3000 or 1100 ms 17-03-18 03:50:26.024 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-18 03:50:26.024 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-18 03:50:26.024 -07 000000461 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-18 03:50:26.024 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-18 03:50:26.024 -07 000000444 INF: Disarm and arm camera sensor 0: ROITrigger start. 17-03-18 03:50:26.024 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-18 03:50:26.024 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms. 17-03-18 03:50:26.024 -07 000000444 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start. 17-03-18 03:50:26.034 -07 000000444 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms. 17-03-18 03:50:26.034 -07 000000444 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start. 17-03-18 03:50:26.034 -07 000000444 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms. 17-03-18 03:50:26.034 -07 000000444 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms. 17-03-18 03:50:26.044 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera] 17-03-18 03:50:26.084 -07 000000455 INF: FPGA: Recv @CAMSNAP turning led on 40 17-03-18 03:50:26.174 -07 000000455 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 117, FrontChillerTemperature: 3.993549, 17-03-18 03:50:26.384 -07 000000461 INF: FPGA: Recv @CAMSNAP img rdy 340 17-03-18 03:50:26.384 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340 17-03-18 03:50:26.384 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start. 17-03-18 03:50:26.384 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 594000200, 0x0, 559484976) start. 17-03-18 03:50:26.424 -07 000000569 INF: FPGA: Recv @CAMSNAP 380 17-03-18 03:50:26.424 -07 000000626 INF: FPGA: Recv CAMSNAP 17-03-18 03:50:26.424 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 374 ms to get response, and 384 ms overall 17-03-18 03:50:26.504 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 594000200, 0x0, 559484976) end. Duration was 114 ms. 17-03-18 03:50:26.504 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-18 03:50:26.504 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms. 17-03-18 03:50:26.504 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms. 17-03-18 03:50:26.524 -07 000000561 INF: Autofocus start 17-03-18 03:50:26.524 -07 000000561 INF: MeasureProfile start 17-03-18 03:50:26.524 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-18 03:50:26.534 -07 000000444 INF: FPGA: Recv FOCMRRCUR 17-03-18 03:50:26.534 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall 17-03-18 03:50:26.534 -07 000000569 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror] 17-03-18 03:50:26.544 -07 000000561 INF: MeasureProfile done 17-03-18 03:50:26.544 -07 000000561 INF: X=0 Z correction [um]=-0.02394831 17-03-18 03:50:26.544 -07 000000561 INF: Autofocus finished 17-03-18 03:50:26.614 -07 000000012 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-18 03:50:26.614 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 116. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1683, R2=1752, Total=3435. Warn if over 250 bubbles per interval. 17-03-18 03:50:26.734 -07 000000012 INF: FPGA: Recv FOCMRRIMG 17-03-18 03:50:26.734 -07 000000569 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 202 ms overall 17-03-18 03:50:26.734 -07 000000610 INF: ------------ Scan Snapping tile 17 at Y-position 73.17626953125, Z-position -0.134887040936507. ---------- 17-03-18 03:50:26.744 -07 000000610 INF: Cycle 117 Tile 17 Exposure Settings A 411 G 198 T 198 C 411 17-03-18 03:50:26.744 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27971, sync = True, waitForSettling = True) 17-03-18 03:50:26.744 -07 000000610 INF: Z Motor: Moving to -0.128043 mm, started at -0.134887 mm, distance = 6.84 um 17-03-18 03:50:26.744 -07 000000610 INF: FPGA: Xmit ZDACW 27971\n [Z Motor] 17-03-18 03:50:26.744 -07 000000561 INF: FPGA: Recv ZDACW 17-03-18 03:50:26.754 -07 000000610 INF: FPGA: 'ZDACW 27971' command took 0 ms to send, 0 ms to get response, and 7 ms overall 17-03-18 03:50:26.754 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-18 03:50:26.754 -07 000000455 INF: FPGA: Recv ZDACR 27971 17-03-18 03:50:26.764 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:50:26.764 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-18 03:50:26.914 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:50:26.914 -07 000000561 INF: FPGA: Recv ZSGSRD 29219 17-03-18 03:50:26.924 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:50:26.924 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:50:26.924 -07 000000444 INF: FPGA: Recv ZSGSRD 29224 17-03-18 03:50:26.934 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:50:26.934 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:50:26.934 -07 000000438 INF: FPGA: Recv ZSGSRD 29224 17-03-18 03:50:26.944 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:50:26.944 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:50:26.944 -07 000000012 INF: FPGA: Recv ZSGSRD 29220 17-03-18 03:50:26.954 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:50:26.954 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:50:26.954 -07 000000461 INF: FPGA: Recv ZSGSRD 29216 17-03-18 03:50:26.964 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:50:26.964 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:50:26.964 -07 000000012 INF: FPGA: Recv ZSGSRD 29230 17-03-18 03:50:26.974 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:50:26.974 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:50:26.974 -07 000000569 INF: FPGA: Recv ZSGSRD 29224 17-03-18 03:50:26.984 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:50:26.984 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:50:26.984 -07 000000626 INF: FPGA: Recv ZSGSRD 29218 17-03-18 03:50:26.994 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:50:26.994 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:50:26.994 -07 000000561 INF: FPGA: Recv ZSGSRD 29216 17-03-18 03:50:27.004 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:50:27.004 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:50:27.004 -07 000000444 INF: FPGA: Recv ZSGSRD 29219 17-03-18 03:50:27.014 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:50:27.014 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-18 03:50:27.014 -07 000000461 INF: FPGA: Recv ZPIEZORD 24704 17-03-18 03:50:27.024 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:50:27.024 -07 000000610 INF: Z Motor: Piezo is near 32.8 V (nominally 0 to 100 V), expect near 42.7 V, since DAC is at 4.268 V. Piezo Error = -9.9 V. 17-03-18 03:50:27.024 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.0 um, Read 10 ADC samples: Avg = 29221 (-127.3 uncal um), Error = 0.8 uncal um, Median = 29220 (-127.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 29216 (-127.2 uncal um), Max = 29230 (-127.3 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um) 17-03-18 03:50:27.024 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29221, posNoise = 9, negNoise = 5 17-03-18 03:50:27.024 -07 000000610 INF: Z Motor: After move to -0.128043, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-18 03:50:27.024 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms) 17-03-18 03:50:27.024 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-18 03:50:27.024 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-18 03:50:27.024 -07 000000444 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-18 03:50:27.024 -07 000000012 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-18 03:50:27.024 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start. 17-03-18 03:50:27.024 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-18 03:50:27.024 -07 000000461 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start. 17-03-18 03:50:27.024 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074704) start. 17-03-18 03:50:27.024 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-18 03:50:27.024 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start. 17-03-18 03:50:27.024 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms. 17-03-18 03:50:27.024 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start. 17-03-18 03:50:27.034 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms. 17-03-18 03:50:27.034 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start. 17-03-18 03:50:27.034 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms. 17-03-18 03:50:27.034 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start. 17-03-18 03:50:27.044 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 12 ms. 17-03-18 03:50:27.044 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 17 ms. 17-03-18 03:50:27.044 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 12 ms. 17-03-18 03:50:27.044 -07 000000461 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 18 ms. 17-03-18 03:50:27.044 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 411 411 198 198 28147 150\n [Camera] 17-03-18 03:50:27.244 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP turning red on 192 17-03-18 03:50:27.654 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 603 17-03-18 03:50:27.654 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 603 17-03-18 03:50:27.664 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-18 03:50:27.664 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-18 03:50:27.664 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) start. 17-03-18 03:50:27.664 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 603 17-03-18 03:50:27.664 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 603 17-03-18 03:50:27.664 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-18 03:50:27.664 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-18 03:50:27.664 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) start. 17-03-18 03:50:27.854 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28147 796 17-03-18 03:50:28.004 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning grn on 947 17-03-18 03:50:28.054 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) end. Duration was 391 ms. 17-03-18 03:50:28.054 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 392 ms. 17-03-18 03:50:28.054 -07 000000569 INF: Camera: CopyActivePixFullImage start. 17-03-18 03:50:28.054 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) end. Duration was 394 ms. 17-03-18 03:50:28.054 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms. 17-03-18 03:50:28.054 -07 000000455 INF: Camera: CopyActivePixFullImage start. 17-03-18 03:50:28.064 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms. 17-03-18 03:50:28.064 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-18 03:50:28.064 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms. 17-03-18 03:50:28.064 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 405 ms. 17-03-18 03:50:28.204 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1147 17-03-18 03:50:28.204 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1147 17-03-18 03:50:28.204 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-18 03:50:28.204 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1147 17-03-18 03:50:28.204 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1147 17-03-18 03:50:28.204 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-18 03:50:28.204 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start. 17-03-18 03:50:28.204 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-18 03:50:28.204 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-18 03:50:28.204 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start. 17-03-18 03:50:28.394 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP 1336 17-03-18 03:50:28.394 -07 000000626 INF: FPGA: Recv CAMDBLSNAP 17-03-18 03:50:28.394 -07 000000610 INF: FPGA: 'CAMDBLSNAP 411 411 198 198 28147 150' command took 2 ms to send, 1331 ms to get response, and 1343 ms overall 17-03-18 03:50:28.394 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503 17-03-18 03:50:28.394 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 18 at Y-position 73.17626953125, Z-Position -0.128045255005532. ------ 17-03-18 03:50:28.394 -07 000000579 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-18 03:50:28.394 -07 000000455 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.0226 mm, moving Z to -0.13440 mm 17-03-18 03:50:28.394 -07 000000455 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move 17-03-18 03:50:28.404 -07 000000606 INF: FPGA: Recv FOCMRRCUR 17-03-18 03:50:28.404 -07 000000579 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall 17-03-18 03:50:28.404 -07 000000626 INF: Z Motor: Entering MoveAbsStepped (DAC = 29359, sync = True, waitForSettling = False) 17-03-18 03:50:28.404 -07 000000461 INF: Y Motor: Entering MoveAbsStepped (target = 118436 steps, sync = True, waitForSettling = True) 17-03-18 03:50:28.404 -07 000000579 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror] 17-03-18 03:50:28.404 -07 000000626 INF: Z Motor: Moving to -0.134397 mm, started at -0.128045 mm, distance = -6.35 um 17-03-18 03:50:28.404 -07 000000461 INF: Y Motor: Moving to 74.0226 mm, started at 73.1763 mm, delta = 0.8463 mm 17-03-18 03:50:28.414 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 03:50:28.414 -07 000000480 INF: FPGA: Recv YRDPOS 149865 17-03-18 03:50:28.424 -07 000000626 INF: FPGA: Xmit ZDACW 29359\n [Z Motor] 17-03-18 03:50:28.424 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 17 ms overall 17-03-18 03:50:28.424 -07 000000461 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 03:50:28.424 -07 000000461 INF: Y Motor: Last commanded position = 73.1926 mm (117108.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True 17-03-18 03:50:28.424 -07 000000461 INF: Y Motor: Moving 1354 steps-33 17-03-18 03:50:28.424 -07 000000438 INF: FPGA: Recv ZDACW 17-03-18 03:50:28.434 -07 000000626 INF: FPGA: 'ZDACW 29359' command took 0 ms to send, 0 ms to get response, and 27 ms overall 17-03-18 03:50:28.434 -07 000000626 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-18 03:50:28.434 -07 000000474 INF: FPGA: Recv ZDACR 29359 17-03-18 03:50:28.444 -07 000000461 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor] 17-03-18 03:50:28.444 -07 000000626 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:50:28.444 -07 000000626 INF: Z Motor: MoveAbsStepped took 38 ms (did NOT wait for settling yet)) 17-03-18 03:50:28.594 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 385 ms. 17-03-18 03:50:28.594 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 385 ms. 17-03-18 03:50:28.594 -07 000000561 INF: Camera: CopyActivePixFullImage start. 17-03-18 03:50:28.594 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-18 03:50:28.594 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 389 ms. 17-03-18 03:50:28.594 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 390 ms. 17-03-18 03:50:28.594 -07 000000569 INF: Camera: CopyActivePixFullImage start. 17-03-18 03:50:28.604 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-18 03:50:28.604 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 396 ms. 17-03-18 03:50:28.604 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 396 ms. 17-03-18 03:50:28.604 -07 000000606 INF: FPGA: Recv FOCMRRFOC 17-03-18 03:50:28.604 -07 000000579 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 194 ms to get response, and 202 ms overall 17-03-18 03:50:28.814 -07 000000474 INF: FPGA: Recv YMVTILE 17-03-18 03:50:28.814 -07 000000461 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall 17-03-18 03:50:28.854 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 03:50:28.864 -07 000000501 INF: FPGA: Recv YRDPOS 151569 17-03-18 03:50:28.864 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall 17-03-18 03:50:28.864 -07 000000461 INF: Y Motor: Encoder = 151569 = motor step 118413.3 = 74.0083 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 03:50:28.864 -07 000000461 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm) 17-03-18 03:50:28.864 -07 000000461 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.846 mm, average velocity = 2.132 mm/sec 17-03-18 03:50:29.814 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 03:50:29.814 -07 000000501 INF: FPGA: Recv YRDPOS 151569 17-03-18 03:50:29.824 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-18 03:50:29.824 -07 000000461 INF: Y Motor: Encoder = 151569 = motor step 118413.3 = 74.0083 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 03:50:29.844 -07 000000461 INF: Y Motor: After move to 74.022606, error = -0.014305, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm 17-03-18 03:50:29.844 -07 000000461 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm) 17-03-18 03:50:29.844 -07 000000461 INF: Y Motor: Moved to 74.0083 after 1441 ms (table move) 17-03-18 03:50:29.844 -07 000000455 INF: Z Motor: EndOfMoveAbsStepped: target = -0.134397 mm (DAC = 29359) 17-03-18 03:50:29.844 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:50:29.844 -07 000000480 INF: FPGA: Recv ZSGSRD 30211 17-03-18 03:50:29.854 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall 17-03-18 03:50:29.854 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:50:29.854 -07 000000444 INF: FPGA: Recv ZSGSRD 30209 17-03-18 03:50:29.864 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-18 03:50:29.864 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:50:29.864 -07 000000480 INF: FPGA: Recv ZSGSRD 30209 17-03-18 03:50:29.874 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:50:29.874 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:50:29.874 -07 000000012 INF: FPGA: Recv ZSGSRD 30211 17-03-18 03:50:29.884 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:50:29.884 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:50:29.884 -07 000000444 INF: FPGA: Recv ZSGSRD 30212 17-03-18 03:50:29.894 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:50:29.894 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:50:29.894 -07 000000501 INF: FPGA: Recv ZSGSRD 30216 17-03-18 03:50:29.904 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:50:29.904 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:50:29.904 -07 000000012 INF: FPGA: Recv ZSGSRD 30213 17-03-18 03:50:29.914 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:50:29.914 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:50:29.914 -07 000000569 INF: FPGA: Recv ZSGSRD 30213 17-03-18 03:50:29.924 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:50:29.924 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:50:29.924 -07 000000501 INF: FPGA: Recv ZSGSRD 30210 17-03-18 03:50:29.934 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:50:29.934 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:50:29.934 -07 000000579 INF: FPGA: Recv ZSGSRD 30204 17-03-18 03:50:29.944 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:50:29.944 -07 000000455 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-18 03:50:29.944 -07 000000569 INF: FPGA: Recv ZPIEZORD 25957 17-03-18 03:50:29.954 -07 000000455 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:50:29.954 -07 000000455 INF: Z Motor: Piezo is near 35.5 V (nominally 0 to 100 V), expect near 44.8 V, since DAC is at 4.480 V. Piezo Error = -9.3 V. 17-03-18 03:50:29.954 -07 000000455 INF: Z Motor: ReadAdcAverage: Commanded Z = -134.4 um, Read 10 ADC samples: Avg = 30211 (-133.6 uncal um), Error = 0.8 uncal um, Median = 30211 (-133.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 30204 (-133.6 uncal um), Max = 30216 (-133.6 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um) 17-03-18 03:50:29.954 -07 000000455 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30211, posNoise = 5, negNoise = 7 17-03-18 03:50:29.954 -07 000000455 INF: Z Motor: After move to -0.134397, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-18 03:50:29.954 -07 000000455 INF: Z Motor: Settle wait time = 1444 ms, measure time = 106 ms (allowed 150 ms), total time = 1550 ms 17-03-18 03:50:29.954 -07 000000455 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms 17-03-18 03:50:30.004 -07 000000455 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1603 ms 17-03-18 03:50:30.004 -07 000000455 INF: Y Motor: Restored settling times back to 3000 or 1100 ms 17-03-18 03:50:30.004 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-18 03:50:30.004 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-18 03:50:30.004 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-18 03:50:30.004 -07 000000455 INF: Disarm and arm camera sensor 0: ROITrigger start. 17-03-18 03:50:30.004 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-18 03:50:30.004 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-18 03:50:30.004 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-18 03:50:30.004 -07 000000455 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start. 17-03-18 03:50:30.014 -07 000000455 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms. 17-03-18 03:50:30.014 -07 000000455 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start. 17-03-18 03:50:30.024 -07 000000455 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms. 17-03-18 03:50:30.024 -07 000000455 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms. 17-03-18 03:50:30.024 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera] 17-03-18 03:50:30.074 -07 000000626 INF: FPGA: Recv @CAMSNAP turning led on 40 17-03-18 03:50:30.374 -07 000000569 INF: FPGA: Recv @CAMSNAP img rdy 340 17-03-18 03:50:30.374 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340 17-03-18 03:50:30.374 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start. 17-03-18 03:50:30.374 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2147487792, 0x0, 559484976) start. 17-03-18 03:50:30.414 -07 000000579 INF: FPGA: Recv @CAMSNAP 380 17-03-18 03:50:30.414 -07 000000626 INF: FPGA: Recv CAMSNAP 17-03-18 03:50:30.414 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 383 ms to get response, and 384 ms overall 17-03-18 03:50:30.504 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2147487792, 0x0, 559484976) end. Duration was 127 ms. 17-03-18 03:50:30.504 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-18 03:50:30.504 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms. 17-03-18 03:50:30.504 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms. 17-03-18 03:50:30.514 -07 000000579 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-18 03:50:30.514 -07 000000455 INF: Autofocus start 17-03-18 03:50:30.514 -07 000000455 INF: MeasureProfile start 17-03-18 03:50:30.514 -07 000000501 INF: FPGA: Recv FOCMRRCUR 17-03-18 03:50:30.524 -07 000000579 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall 17-03-18 03:50:30.524 -07 000000579 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror] 17-03-18 03:50:30.524 -07 000000455 INF: MeasureProfile done 17-03-18 03:50:30.524 -07 000000455 INF: X=-76 Z correction [um]=-0.3733572 17-03-18 03:50:30.524 -07 000000455 INF: Autofocus finished 17-03-18 03:50:30.724 -07 000000455 INF: FPGA: Recv FOCMRRIMG 17-03-18 03:50:30.724 -07 000000579 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall 17-03-18 03:50:30.724 -07 000000610 INF: ------------ Scan Snapping tile 18 at Y-position 74.00830078125, Z-position -0.134405225025875. ---------- 17-03-18 03:50:30.724 -07 000000610 INF: Cycle 117 Tile 18 Exposure Settings A 411 G 198 T 198 C 411 17-03-18 03:50:30.734 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27790, sync = True, waitForSettling = True) 17-03-18 03:50:30.734 -07 000000610 INF: Z Motor: Moving to -0.127214 mm, started at -0.134405 mm, distance = 7.19 um 17-03-18 03:50:30.734 -07 000000610 INF: FPGA: Xmit ZDACW 27790\n [Z Motor] 17-03-18 03:50:30.734 -07 000000579 INF: FPGA: Recv ZDACW 17-03-18 03:50:30.744 -07 000000610 INF: FPGA: 'ZDACW 27790' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:50:30.744 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-18 03:50:30.744 -07 000000626 INF: FPGA: Recv ZDACR 27790 17-03-18 03:50:30.754 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:50:30.754 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-18 03:50:30.904 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:50:30.904 -07 000000626 INF: FPGA: Recv ZSGSRD 29086 17-03-18 03:50:30.914 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 10 ms overall 17-03-18 03:50:30.914 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:50:30.914 -07 000000455 INF: FPGA: Recv ZSGSRD 29092 17-03-18 03:50:30.924 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:50:30.924 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:50:30.924 -07 000000626 INF: FPGA: Recv ZSGSRD 29092 17-03-18 03:50:30.934 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:50:30.934 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:50:30.934 -07 000000569 INF: FPGA: Recv ZSGSRD 29090 17-03-18 03:50:30.944 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:50:30.944 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:50:30.944 -07 000000626 INF: FPGA: Recv ZSGSRD 29090 17-03-18 03:50:30.954 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:50:30.954 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:50:30.954 -07 000000569 INF: FPGA: Recv ZSGSRD 29093 17-03-18 03:50:30.964 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:50:30.964 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:50:30.964 -07 000000626 INF: FPGA: Recv ZSGSRD 29091 17-03-18 03:50:30.974 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:50:30.974 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:50:30.974 -07 000000455 INF: FPGA: Recv ZSGSRD 29093 17-03-18 03:50:30.984 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:50:30.984 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:50:30.984 -07 000000626 INF: FPGA: Recv ZSGSRD 29090 17-03-18 03:50:30.994 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:50:30.994 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:50:30.994 -07 000000569 INF: FPGA: Recv ZSGSRD 29088 17-03-18 03:50:31.004 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:50:31.004 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-18 03:50:31.004 -07 000000626 INF: FPGA: Recv ZPIEZORD 24555 17-03-18 03:50:31.014 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:50:31.014 -07 000000610 INF: Z Motor: Piezo is near 32.5 V (nominally 0 to 100 V), expect near 42.4 V, since DAC is at 4.240 V. Piezo Error = -9.9 V. 17-03-18 03:50:31.014 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -127.2 um, Read 10 ADC samples: Avg = 29090 (-126.4 uncal um), Error = 0.8 uncal um, Median = 29090 (-126.4 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 29086 (-126.4 uncal um), Max = 29093 (-126.5 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um) 17-03-18 03:50:31.014 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29090, posNoise = 3, negNoise = 4 17-03-18 03:50:31.014 -07 000000610 INF: Z Motor: After move to -0.127214, error = 0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-18 03:50:31.014 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms) 17-03-18 03:50:31.014 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-18 03:50:31.014 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-18 03:50:31.014 -07 000000455 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-18 03:50:31.014 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start. 17-03-18 03:50:31.014 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) start. 17-03-18 03:50:31.014 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-18 03:50:31.014 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start. 17-03-18 03:50:31.014 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-18 03:50:31.014 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms. 17-03-18 03:50:31.014 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start. 17-03-18 03:50:31.014 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms. 17-03-18 03:50:31.014 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start. 17-03-18 03:50:31.014 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms. 17-03-18 03:50:31.014 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start. 17-03-18 03:50:31.024 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms. 17-03-18 03:50:31.024 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start. 17-03-18 03:50:31.034 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms. 17-03-18 03:50:31.034 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 11 ms. 17-03-18 03:50:31.034 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms. 17-03-18 03:50:31.034 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms. 17-03-18 03:50:31.034 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 411 411 198 198 27967 150\n [Camera] 17-03-18 03:50:31.234 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning red on 192 17-03-18 03:50:31.534 -07 000000501 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 117, FrontChillerTemperature: 4.014009, 17-03-18 03:50:31.614 -07 000000579 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-18 03:50:31.614 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 116. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1683, R2=1752, Total=3435. Warn if over 250 bubbles per interval. 17-03-18 03:50:31.644 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 604 17-03-18 03:50:31.644 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 604 17-03-18 03:50:31.644 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-18 03:50:31.644 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-18 03:50:31.644 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start. 17-03-18 03:50:31.644 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 604 17-03-18 03:50:31.644 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 604 17-03-18 03:50:31.644 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-18 03:50:31.644 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-18 03:50:31.644 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start. 17-03-18 03:50:31.834 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 27967 796 17-03-18 03:50:31.984 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP turning grn on 946 17-03-18 03:50:32.024 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 378 ms. 17-03-18 03:50:32.024 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms. 17-03-18 03:50:32.024 -07 000000501 INF: Camera: CopyActivePixFullImage start. 17-03-18 03:50:32.034 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-18 03:50:32.034 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 385 ms. 17-03-18 03:50:32.034 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 385 ms. 17-03-18 03:50:32.034 -07 000000579 INF: Camera: CopyActivePixFullImage start. 17-03-18 03:50:32.034 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-18 03:50:32.034 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 389 ms. 17-03-18 03:50:32.034 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms. 17-03-18 03:50:32.184 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1144 17-03-18 03:50:32.184 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1144 17-03-18 03:50:32.184 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-18 03:50:32.184 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-18 03:50:32.184 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) start. 17-03-18 03:50:32.184 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1144 17-03-18 03:50:32.184 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1144 17-03-18 03:50:32.184 -07 000000474 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-18 03:50:32.184 -07 000000474 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-18 03:50:32.184 -07 000000474 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) start. 17-03-18 03:50:32.374 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP 1337 17-03-18 03:50:32.374 -07 000000579 INF: FPGA: Recv CAMDBLSNAP 17-03-18 03:50:32.374 -07 000000610 INF: FPGA: 'CAMDBLSNAP 411 411 198 198 27967 150' command took 2 ms to send, 1337 ms to get response, and 1343 ms overall 17-03-18 03:50:32.374 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503 17-03-18 03:50:32.374 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 19 at Y-position 74.00830078125, Z-Position -0.127203683214961. ------ 17-03-18 03:50:32.384 -07 000000501 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.8526 mm, moving Z to -0.13322 mm 17-03-18 03:50:32.384 -07 000000501 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move 17-03-18 03:50:32.384 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-18 03:50:32.384 -07 000000606 INF: Y Motor: Entering MoveAbsStepped (target = 119764 steps, sync = True, waitForSettling = True) 17-03-18 03:50:32.384 -07 000000606 INF: Y Motor: Moving to 74.8526 mm, started at 74.0083 mm, delta = 0.8443 mm 17-03-18 03:50:32.384 -07 000000626 INF: Z Motor: Entering MoveAbsStepped (DAC = 29102, sync = True, waitForSettling = False) 17-03-18 03:50:32.384 -07 000000626 INF: Z Motor: Moving to -0.133220 mm, started at -0.127204 mm, distance = -6.02 um 17-03-18 03:50:32.384 -07 000000579 INF: FPGA: Recv FOCMRRCUR 17-03-18 03:50:32.394 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall 17-03-18 03:50:32.394 -07 000000626 INF: FPGA: Xmit ZDACW 29102\n [Z Motor] 17-03-18 03:50:32.394 -07 000000455 INF: FPGA: Recv ZDACW 17-03-18 03:50:32.404 -07 000000606 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 03:50:32.404 -07 000000626 INF: FPGA: 'ZDACW 29102' command took 2 ms to send, 0 ms to get response, and 13 ms overall 17-03-18 03:50:32.404 -07 000000579 INF: FPGA: Recv YRDPOS 151569 17-03-18 03:50:32.414 -07 000000569 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror] 17-03-18 03:50:32.414 -07 000000606 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 24 ms overall 17-03-18 03:50:32.414 -07 000000606 INF: Y Motor: Encoder = 151569 = motor step 118413.3 = 74.0083 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 03:50:32.414 -07 000000606 INF: Y Motor: Last commanded position = 74.0226 mm (118436.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True 17-03-18 03:50:32.414 -07 000000606 INF: Y Motor: Moving 1351 steps-29 17-03-18 03:50:32.424 -07 000000626 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-18 03:50:32.424 -07 000000382 INF: FPGA: Recv ZDACR 29102 17-03-18 03:50:32.434 -07 000000626 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall 17-03-18 03:50:32.434 -07 000000626 INF: Z Motor: MoveAbsStepped took 44 ms (did NOT wait for settling yet)) 17-03-18 03:50:32.434 -07 000000606 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor] 17-03-18 03:50:32.574 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) end. Duration was 389 ms. 17-03-18 03:50:32.574 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 389 ms. 17-03-18 03:50:32.574 -07 000000561 INF: Camera: CopyActivePixFullImage start. 17-03-18 03:50:32.574 -07 000000474 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) end. Duration was 387 ms. 17-03-18 03:50:32.574 -07 000000474 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 387 ms. 17-03-18 03:50:32.574 -07 000000474 INF: Camera: CopyActivePixFullImage start. 17-03-18 03:50:32.584 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-18 03:50:32.584 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms. 17-03-18 03:50:32.584 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 397 ms. 17-03-18 03:50:32.584 -07 000000474 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 398 ms. 17-03-18 03:50:32.614 -07 000000382 INF: FPGA: Recv FOCMRRFOC 17-03-18 03:50:32.614 -07 000000569 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 220 ms overall 17-03-18 03:50:32.804 -07 000000569 INF: FPGA: Recv YMVTILE 17-03-18 03:50:32.804 -07 000000606 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 398 ms overall 17-03-18 03:50:32.834 -07 000000606 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 03:50:32.844 -07 000000474 INF: FPGA: Recv YRDPOS 153256 17-03-18 03:50:32.844 -07 000000606 INF: FPGA: 'YRDPOS' command took 0 ms to send, 4 ms to get response, and 5 ms overall 17-03-18 03:50:32.844 -07 000000606 INF: Y Motor: Encoder = 153256 = motor step 119731.3 = 74.8320 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 03:50:32.844 -07 000000606 INF: Y Motor: Position error before settling (table move) = -42 encoder counts (-0.021 mm) 17-03-18 03:50:32.844 -07 000000606 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.844 mm, average velocity = 2.121 mm/sec 17-03-18 03:50:33.794 -07 000000606 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 03:50:33.794 -07 000000569 INF: FPGA: Recv YRDPOS 153256 17-03-18 03:50:33.804 -07 000000606 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:50:33.804 -07 000000606 INF: Y Motor: Encoder = 153256 = motor step 119731.3 = 74.8320 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 03:50:33.824 -07 000000606 INF: Y Motor: After move to 74.852608, error = -0.020576, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm 17-03-18 03:50:33.824 -07 000000606 INF: Y Motor: Position error after settling (table move) = -42 encoder counts (-0.021 mm), Delta during settling = 0 counts (0.000 mm) 17-03-18 03:50:33.824 -07 000000606 INF: Y Motor: Moved to 74.8320 after 1435 ms (table move) 17-03-18 03:50:33.824 -07 000000501 INF: Z Motor: EndOfMoveAbsStepped: target = -0.133220 mm (DAC = 29102) 17-03-18 03:50:33.824 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:50:33.824 -07 000000606 INF: FPGA: Recv ZSGSRD 30025 17-03-18 03:50:33.834 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall 17-03-18 03:50:33.834 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:50:33.834 -07 000000606 INF: FPGA: Recv ZSGSRD 30027 17-03-18 03:50:33.844 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:50:33.844 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:50:33.844 -07 000000606 INF: FPGA: Recv ZSGSRD 30024 17-03-18 03:50:33.854 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:50:33.854 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:50:33.854 -07 000000606 INF: FPGA: Recv ZSGSRD 30017 17-03-18 03:50:33.864 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:50:33.864 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:50:33.864 -07 000000444 INF: FPGA: Recv ZSGSRD 30027 17-03-18 03:50:33.874 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:50:33.874 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:50:33.874 -07 000000561 INF: FPGA: Recv ZSGSRD 30035 17-03-18 03:50:33.884 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:50:33.884 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:50:33.884 -07 000000444 INF: FPGA: Recv ZSGSRD 30032 17-03-18 03:50:33.894 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:50:33.894 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:50:33.894 -07 000000444 INF: FPGA: Recv ZSGSRD 30030 17-03-18 03:50:33.904 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:50:33.904 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:50:33.904 -07 000000606 INF: FPGA: Recv ZSGSRD 30024 17-03-18 03:50:33.914 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:50:33.914 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:50:33.914 -07 000000382 INF: FPGA: Recv ZSGSRD 30031 17-03-18 03:50:33.924 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:50:33.924 -07 000000501 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-18 03:50:33.924 -07 000000382 INF: FPGA: Recv ZPIEZORD 25774 17-03-18 03:50:33.934 -07 000000501 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:50:33.934 -07 000000501 INF: Z Motor: Piezo is near 35.1 V (nominally 0 to 100 V), expect near 44.4 V, since DAC is at 4.441 V. Piezo Error = -9.3 V. 17-03-18 03:50:33.934 -07 000000501 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.2 um, Read 10 ADC samples: Avg = 30027 (-132.4 uncal um), Error = 0.8 uncal um, Median = 30027 (-132.4 uncal um), StdDev = 5 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 30017 (-132.4 uncal um), Max = 30035 (-132.5 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 10 (0.1 uncal um) 17-03-18 03:50:33.934 -07 000000501 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30027, posNoise = 8, negNoise = 10 17-03-18 03:50:33.934 -07 000000501 INF: Z Motor: After move to -0.133220, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-18 03:50:33.934 -07 000000501 INF: Z Motor: Settle wait time = 1437 ms, measure time = 108 ms (allowed 150 ms), total time = 1545 ms 17-03-18 03:50:33.934 -07 000000501 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms 17-03-18 03:50:33.984 -07 000000501 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1596 ms 17-03-18 03:50:33.984 -07 000000501 INF: Y Motor: Restored settling times back to 3000 or 1100 ms 17-03-18 03:50:33.984 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-18 03:50:33.984 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-18 03:50:33.984 -07 000000480 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-18 03:50:33.984 -07 000000461 INF: Disarm and arm camera sensor 0: ROITrigger start. 17-03-18 03:50:33.984 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-18 03:50:33.984 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-18 03:50:33.984 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-18 03:50:33.984 -07 000000461 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start. 17-03-18 03:50:33.994 -07 000000461 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms. 17-03-18 03:50:33.994 -07 000000461 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start. 17-03-18 03:50:33.994 -07 000000461 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms. 17-03-18 03:50:33.994 -07 000000461 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms. 17-03-18 03:50:34.004 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera] 17-03-18 03:50:34.044 -07 000000569 INF: FPGA: Recv @CAMSNAP turning led on 40 17-03-18 03:50:34.344 -07 000000474 INF: FPGA: Recv @CAMSNAP img rdy 340 17-03-18 03:50:34.344 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340 17-03-18 03:50:34.344 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start. 17-03-18 03:50:34.344 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 682359904, 0x0, 559484976) start. 17-03-18 03:50:34.384 -07 000000480 INF: FPGA: Recv @CAMSNAP 380 17-03-18 03:50:34.384 -07 000000382 INF: FPGA: Recv CAMSNAP 17-03-18 03:50:34.384 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall 17-03-18 03:50:34.464 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 682359904, 0x0, 559484976) end. Duration was 115 ms. 17-03-18 03:50:34.464 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-18 03:50:34.464 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms. 17-03-18 03:50:34.464 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms. 17-03-18 03:50:34.484 -07 000000501 INF: Autofocus start 17-03-18 03:50:34.484 -07 000000501 INF: MeasureProfile start 17-03-18 03:50:34.484 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-18 03:50:34.484 -07 000000579 INF: FPGA: Recv FOCMRRCUR 17-03-18 03:50:34.494 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall 17-03-18 03:50:34.494 -07 000000626 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror] 17-03-18 03:50:34.494 -07 000000501 INF: MeasureProfile done 17-03-18 03:50:34.494 -07 000000501 INF: X=48 Z correction [um]=0.2069503 17-03-18 03:50:34.494 -07 000000501 INF: Autofocus finished 17-03-18 03:50:34.694 -07 000000561 INF: FPGA: Recv FOCMRRIMG 17-03-18 03:50:34.694 -07 000000626 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall 17-03-18 03:50:34.694 -07 000000610 INF: ------------ Scan Snapping tile 19 at Y-position 74.83203125, Z-position -0.133223169991791. ---------- 17-03-18 03:50:34.694 -07 000000610 INF: Cycle 117 Tile 19 Exposure Settings A 411 G 198 T 198 C 411 17-03-18 03:50:34.704 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27660, sync = True, waitForSettling = True) 17-03-18 03:50:34.704 -07 000000610 INF: Z Motor: Moving to -0.126619 mm, started at -0.133223 mm, distance = 6.60 um 17-03-18 03:50:34.704 -07 000000610 INF: FPGA: Xmit ZDACW 27660\n [Z Motor] 17-03-18 03:50:34.704 -07 000000444 INF: FPGA: Recv ZDACW 17-03-18 03:50:34.714 -07 000000610 INF: FPGA: 'ZDACW 27660' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:50:34.714 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-18 03:50:34.714 -07 000000455 INF: FPGA: Recv ZDACR 27660 17-03-18 03:50:34.724 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:50:34.724 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-18 03:50:34.874 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:50:34.874 -07 000000455 INF: FPGA: Recv ZSGSRD 29003 17-03-18 03:50:34.884 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-18 03:50:34.884 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:50:34.884 -07 000000579 INF: FPGA: Recv ZSGSRD 28999 17-03-18 03:50:34.894 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:50:34.894 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:50:34.894 -07 000000444 INF: FPGA: Recv ZSGSRD 28995 17-03-18 03:50:34.904 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:50:34.904 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:50:34.904 -07 000000579 INF: FPGA: Recv ZSGSRD 29001 17-03-18 03:50:34.914 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:50:34.914 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:50:34.914 -07 000000579 INF: FPGA: Recv ZSGSRD 29002 17-03-18 03:50:34.924 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:50:34.924 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:50:34.924 -07 000000579 INF: FPGA: Recv ZSGSRD 28993 17-03-18 03:50:34.934 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:50:34.934 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:50:34.934 -07 000000480 INF: FPGA: Recv ZSGSRD 28999 17-03-18 03:50:34.944 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:50:34.944 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:50:34.944 -07 000000480 INF: FPGA: Recv ZSGSRD 29002 17-03-18 03:50:34.954 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:50:34.954 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:50:34.954 -07 000000579 INF: FPGA: Recv ZSGSRD 28997 17-03-18 03:50:34.964 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:50:34.964 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 03:50:34.964 -07 000000444 INF: FPGA: Recv ZSGSRD 29002 17-03-18 03:50:34.974 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:50:34.974 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-18 03:50:34.974 -07 000000579 INF: FPGA: Recv ZPIEZORD 24426 17-03-18 03:50:34.984 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 03:50:34.984 -07 000000610 INF: Z Motor: Piezo is near 32.2 V (nominally 0 to 100 V), expect near 42.2 V, since DAC is at 4.221 V. Piezo Error = -10.0 V. 17-03-18 03:50:34.984 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -126.6 um, Read 10 ADC samples: Avg = 28999 (-125.8 uncal um), Error = 0.8 uncal um, Median = 29000 (-125.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 28993 (-125.8 uncal um), Max = 29003 (-125.9 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um) 17-03-18 03:50:34.984 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 28999, posNoise = 4, negNoise = 6 17-03-18 03:50:34.984 -07 000000610 INF: Z Motor: After move to -0.126619, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-18 03:50:34.984 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms) 17-03-18 03:50:34.984 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-18 03:50:34.984 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-18 03:50:34.984 -07 000000579 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-18 03:50:34.984 -07 000000444 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-18 03:50:34.984 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start. 17-03-18 03:50:34.984 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-18 03:50:34.984 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start. 17-03-18 03:50:34.984 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) start. 17-03-18 03:50:34.984 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms. 17-03-18 03:50:34.984 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start. 17-03-18 03:50:34.984 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms. 17-03-18 03:50:34.984 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start. 17-03-18 03:50:34.984 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms. 17-03-18 03:50:34.984 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start. 17-03-18 03:50:34.984 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms. 17-03-18 03:50:34.984 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start. 17-03-18 03:50:34.994 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms. 17-03-18 03:50:34.994 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms. 17-03-18 03:50:34.994 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms. 17-03-18 03:50:34.994 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms. 17-03-18 03:50:35.004 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 411 411 198 198 27837 150\n [Camera] 17-03-18 03:50:35.204 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning red on 195 17-03-18 03:50:35.614 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 603 17-03-18 03:50:35.614 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 603 17-03-18 03:50:35.614 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-18 03:50:35.614 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-18 03:50:35.614 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) start. 17-03-18 03:50:35.614 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 603 17-03-18 03:50:35.614 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 603 17-03-18 03:50:35.614 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-18 03:50:35.614 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-18 03:50:35.614 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) start. 17-03-18 03:50:35.804 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 27837 796 17-03-18 03:50:35.954 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning grn on 946 17-03-18 03:50:35.994 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) end. Duration was 383 ms. 17-03-18 03:50:35.994 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) end. Duration was 381 ms. 17-03-18 03:50:35.994 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 381 ms. 17-03-18 03:50:35.994 -07 000000579 INF: Camera: CopyActivePixFullImage start. 17-03-18 03:50:35.994 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms. 17-03-18 03:50:35.994 -07 000000480 INF: Camera: CopyActivePixFullImage start. 17-03-18 03:50:36.004 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-18 03:50:36.004 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-18 03:50:36.004 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 389 ms. 17-03-18 03:50:36.014 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms. 17-03-18 03:50:36.154 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1144 17-03-18 03:50:36.154 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1144 17-03-18 03:50:36.154 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-18 03:50:36.154 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-18 03:50:36.154 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 2620985504, 0x0, 391868352) start. 17-03-18 03:50:36.154 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1144 17-03-18 03:50:36.154 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1144 17-03-18 03:50:36.154 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-18 03:50:36.154 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-18 03:50:36.154 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 2684358704, 0x0, 418435064) start. 17-03-18 03:50:36.344 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP 1337 17-03-18 03:50:36.344 -07 000000444 INF: FPGA: Recv CAMDBLSNAP 17-03-18 03:50:36.344 -07 000000610 INF: FPGA: 'CAMDBLSNAP 411 411 198 198 27837 150' command took 2 ms to send, 1336 ms to get response, and 1344 ms overall 17-03-18 03:50:36.554 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 2620985504, 0x0, 391868352) end. Duration was 404 ms. 17-03-18 03:50:36.554 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 404 ms. 17-03-18 03:50:36.554 -07 000000480 INF: Camera: CopyActivePixFullImage start. 17-03-18 03:50:36.564 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 2684358704, 0x0, 418435064) end. Duration was 403 ms. 17-03-18 03:50:36.564 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 403 ms. 17-03-18 03:50:36.564 -07 000000579 INF: Camera: CopyActivePixFullImage start. 17-03-18 03:50:36.564 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-18 03:50:36.564 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms. 17-03-18 03:50:36.564 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 412 ms. 17-03-18 03:50:36.564 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) start. 17-03-18 03:50:36.574 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms. 17-03-18 03:50:36.614 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) end. Duration was 42 ms. 17-03-18 03:50:36.614 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) start. 17-03-18 03:50:36.614 -07 000000579 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-18 03:50:36.614 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 116. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1683, R2=1752, Total=3435. Warn if over 250 bubbles per interval. 17-03-18 03:50:36.654 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) end. Duration was 41 ms. 17-03-18 03:50:36.664 -07 000000610 INF: Enabling Skipping AutoFocus in the next 4 cycles. 17-03-18 03:50:36.664 -07 000000610 INF: Imaging Cycle 117: ScanTilesCommand Cycle 117 time end. Duration was 172655 ms. 17-03-18 03:50:36.664 -07 000000610 INF: =================== Cycle #117 =================== 17-03-18 03:50:36.664 -07 000000610 INF: =================== =================== 17-03-18 03:50:36.664 -07 000000579 INF: FPGA: Xmit EXLED1ADCR\n [GreenLED] 17-03-18 03:50:36.674 -07 000000626 INF: FPGA: Recv EXLED1ADCR 25 17-03-18 03:50:36.674 -07 000000579 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 3 ms overall 17-03-18 03:50:36.674 -07 000000579 INF: GreenLED: Using Green data: Photodiode ADC 25 --> 0.0 mW (old method), or 1.8 mW (new method). Difference = 1.8 mW 17-03-18 03:50:36.674 -07 000000579 INF: Predictive Diagnostic Log Cycle Entry Metrics: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 117, FrontChillerTemperature: 4.003063, FrontChillerHeatSinkTemperature: 0.421278, AmbientTemperature: 18.62668, FlowCellCompartmentTemperature: 22.0027, FlowCellTargetTemperature: 22, FlowCellHeatSinkTemperature: 18.31189, GreenLEDSensorTemperature: 26.8053, PhotodiodePowerAdcGreen: 25, PhotodiodePowerMwGreen: 1.835864 17-03-18 03:50:36.764 -07 000000610 INF: Y-Drift Offset assigned 0.002126916.