17-03-18 03:50:36.824 -07 000000610 INF: =================== Cycle #118 ===================
17-03-18 03:50:36.824 -07 000000610 INF: Y Motor: Entering MoveAbsStepped (target = 120609 steps, sync = True, waitForSettling = True)
17-03-18 03:50:36.824 -07 000000610 INF: Y Motor: Moving to 75.3806 mm, started at 74.8320 mm, delta = 0.5485 mm
17-03-18 03:50:36.824 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:50:36.824 -07 000000626 INF: FPGA: Recv YRDPOS 153256
17-03-18 03:50:36.834 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 03:50:36.834 -07 000000610 INF: Y Motor: Encoder = 153256 = motor step 119731.3 = 74.8320 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:50:36.834 -07 000000610 INF: Y Motor: Last commanded position = 74.8526 mm (119764.2 steps), delta from last commanded position = 0.5280 mm (844.8 steps). UsingTableMove = False
17-03-18 03:50:36.834 -07 000000610 INF: Y Motor: Moving to 154379 encoder counts
17-03-18 03:50:36.834 -07 000000610 INF: FPGA: Xmit YMVTO 154379\n [Y Motor]
17-03-18 03:50:36.894 -07 000000012 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 118, FrontChillerTemperature: 4.003063,
17-03-18 03:50:36.944 -07 000000467 INF: FPGA: Recv YMVTO 154377 872
17-03-18 03:50:36.944 -07 000000610 INF: FPGA: 'YMVTO 154379' command took 0 ms to send, 107 ms to get response, and 116 ms overall
17-03-18 03:50:36.944 -07 000000610 INF: Y Motor: Position error before settling = -2 encoder counts (-0.001 mm)
17-03-18 03:50:36.944 -07 000000610 INF: Y Motor: To move from 74.832 to 75.381 (0.549 mm) should take 877 steps, but required 872 steps (0.545 mm). Slippage = -0.003 mm (-0.01%).
17-03-18 03:50:36.944 -07 000000610 INF: Y Motor: FPGA move command 'YMVTO 154379' took 116 ms, distance = 0.549 mm, average velocity = 4.729 mm/sec
17-03-18 03:50:39.944 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:50:39.944 -07 000000012 INF: FPGA: Recv YRDPOS 154381
17-03-18 03:50:39.954 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:50:39.954 -07 000000610 INF: Y Motor: Encoder = 154381 = motor step 120610.2 = 75.3813 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:50:39.984 -07 000000610 INF: Y Motor: After move to 75.380580, error = 0.000768, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 03:50:39.984 -07 000000610 INF: Y Motor: Position error after settling = 2 encoder counts (0.001 mm), Delta during settling = 4 counts (0.002 mm)
17-03-18 03:50:39.984 -07 000000610 INF: Y Motor: Moved to 75.3813 after 3162 ms
17-03-18 03:50:39.994 -07 000000610 INF: =================== Cycle #118, Flow Cell Temp 60° ===================
17-03-18 03:50:39.994 -07 000000610 INF: =================== Cycle #118, Flow Cell Temp 60°, FC temperature to 60° ===================
17-03-18 03:50:39.994 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 60000000\n [FlowCellTempControl]
17-03-18 03:50:39.994 -07 000000444 INF: FPGA: Recv TEC2TEMP 
17-03-18 03:50:40.004 -07 000000610 INF: FPGA: 'TEC2TEMP 0 60000000' command took 1 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 03:50:40.004 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-18 03:50:40.004 -07 000000012 INF: FPGA: Recv TEC2EN 
17-03-18 03:50:40.014 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:50:40.014 -07 000000610 INF: =================== Cycle #118, Flow Cell Temp 60° ===================
17-03-18 03:50:40.014 -07 000000610 INF: =================== Cycle #118 ===================
17-03-18 03:50:40.014 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-18 03:50:40.014 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 03:50:40.044 -07 000000610 INF: ReagentValve: Recv 18\r
17-03-18 03:50:40.044 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 24 to 3. Moving 3 positions.
17-03-18 03:50:40.044 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-18 03:50:40.344 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 03:50:40.364 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-18 03:50:40.364 -07 000000610 INF: ReagentValve: Move+ from 24 to 3 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-18 03:50:40.414 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 03:50:40.434 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 03:50:40.434 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 03:50:40.534 -07 000000610 INF: =================== Cycle #118, Pumping Reagent PR2 (3) ===================
17-03-18 03:50:40.534 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1
17-03-18 03:50:40.554 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 03:50:40.584 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-18 03:50:40.584 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-18 03:50:40.584 -07 000000610 INF: =================== Cycle #118, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 03:50:40.714 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r
17-03-18 03:50:40.754 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 03:50:41.614 -07 000000579 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 03:50:41.614 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 117. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1683, R2=1752, Total=3435. Warn if over 250 bubbles per interval.
17-03-18 03:50:42.254 -07 000000579 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 118, FrontChillerTemperature: 3.986717,
17-03-18 03:50:43.884 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 03:50:43.914 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 03:50:44.334 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 03:50:44.364 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 03:50:44.784 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 03:50:44.814 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 03:50:44.814 -07 000000610 INF: LanePump: Waited 4059 ms for pump motion to complete
17-03-18 03:50:44.814 -07 000000610 INF: =================== Cycle #118, Pumping Reagent PR2 (3) ===================
17-03-18 03:50:44.944 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 03:50:44.974 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 03:50:44.974 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 03:50:45.104 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 03:50:45.134 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 03:50:45.134 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 03:50:45.134 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 03:50:45.264 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 03:50:45.294 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 03:50:45.724 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 03:50:45.754 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 03:50:45.754 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-18 03:50:45.754 -07 000000610 INF: =================== Cycle #118 ===================
17-03-18 03:50:46.614 -07 000000480 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 03:50:46.614 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 117. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1683, R2=1752, Total=3435. Warn if over 250 bubbles per interval.
17-03-18 03:50:46.974 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-18 03:50:46.974 -07 000000610 INF: ReagentValve: Go to position 4 - PumpToFlowcell start
17-03-18 03:50:46.974 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 03:50:46.994 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 03:50:46.994 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 3 to 4. Moving 1 positions.
17-03-18 03:50:46.994 -07 000000610 INF: ReagentValve: Xmit +04\r
17-03-18 03:50:47.674 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 03:50:47.694 -07 000000610 INF: ReagentValve: Recv 00CD\r
17-03-18 03:50:47.694 -07 000000610 INF: ReagentValve: Move+ from 3 to 4 took 205 steps, expected 204. Error = 1 steps (0.5%)
17-03-18 03:50:47.744 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 03:50:47.764 -07 000000610 INF: ReagentValve: Recv 04\r
17-03-18 03:50:47.764 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 03:50:47.864 -07 000000610 INF: =================== Cycle #118, Pumping Reagent CMS (4) ===================
17-03-18 03:50:47.864 -07 000000610 INF: LanePump: Pumping from 4, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-18 03:50:47.884 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 03:50:47.914 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 03:50:47.914 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 03:50:47.914 -07 000000610 INF: =================== Cycle #118, Pumping Reagent CMS (4), Aspirating port InputPort ===================
17-03-18 03:50:47.964 -07 000000474 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 118, FrontChillerTemperature: 4.0344,
17-03-18 03:50:48.044 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-18 03:50:48.084 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 03:50:49.524 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 03:50:49.554 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 03:50:49.974 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 03:50:50.004 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 03:50:50.004 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-18 03:50:50.004 -07 000000610 INF: =================== Cycle #118, Pumping Reagent CMS (4) ===================
17-03-18 03:50:50.134 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 03:50:50.164 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 03:50:50.164 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 03:50:50.294 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 03:50:50.324 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 03:50:50.324 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 03:50:50.324 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 03:50:50.454 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 03:50:50.484 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 03:50:50.914 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 03:50:50.944 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 03:50:50.944 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 03:50:50.944 -07 000000610 INF: =================== Cycle #118 ===================
17-03-18 03:50:51.614 -07 000000561 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 03:50:51.614 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 117. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1683, R2=1752, Total=3435. Warn if over 250 bubbles per interval.
17-03-18 03:50:52.164 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-18 03:50:52.164 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-18 03:50:52.164 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 03:50:52.184 -07 000000610 INF: ReagentValve: Recv 04\r
17-03-18 03:50:52.184 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 4 to 3. Moving 1 positions.
17-03-18 03:50:52.184 -07 000000610 INF: ReagentValve: Xmit -03\r
17-03-18 03:50:52.334 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 03:50:52.354 -07 000000610 INF: ReagentValve: Recv 00E1\r
17-03-18 03:50:52.354 -07 000000610 INF: ReagentValve: Move- from 4 to 3 took 225 steps, expected 204. Error = 21 steps (10.3%)
17-03-18 03:50:52.404 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 03:50:52.424 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 03:50:52.424 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 03:50:52.524 -07 000000610 INF: =================== Cycle #118, Pumping Reagent PR2 (3) ===================
17-03-18 03:50:52.524 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-18 03:50:52.524 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 03:50:52.554 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 03:50:52.554 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 03:50:52.554 -07 000000610 INF: =================== Cycle #118, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 03:50:52.684 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-18 03:50:52.724 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 03:50:53.324 -07 000000561 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 118, FrontChillerTemperature: 4.012614,
17-03-18 03:50:53.594 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 03:50:53.624 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 03:50:53.624 -07 000000610 INF: LanePump: Waited 898 ms for pump motion to complete
17-03-18 03:50:53.624 -07 000000610 INF: =================== Cycle #118, Pumping Reagent PR2 (3) ===================
17-03-18 03:50:53.754 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 03:50:53.784 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 03:50:53.784 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-18 03:50:53.914 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 03:50:53.944 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 03:50:53.944 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-18 03:50:53.944 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 03:50:54.074 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 03:50:54.104 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 03:50:54.534 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 03:50:54.564 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 03:50:54.564 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-18 03:50:54.564 -07 000000610 INF: =================== Cycle #118 ===================
17-03-18 03:50:54.564 -07 000000561 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 03:50:54.564 -07 000000569 INF: WaitCommand(10000) start
17-03-18 03:50:54.564 -07 000000561 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-18 03:50:55.784 -07 000000561 INF: AsyncDelayTimer waited 1216ms
17-03-18 03:50:55.784 -07 000000561 INF: LanePump: Xmit /1?\r
17-03-18 03:50:55.814 -07 000000561 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 03:50:55.814 -07 000000561 INF: LanePump: Current Position of Pump is: 1110
17-03-18 03:50:55.944 -07 000000561 INF: LanePump: Xmit /1V1500OA0R\r
17-03-18 03:50:55.984 -07 000000561 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 03:50:56.614 -07 000000382 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 03:50:56.614 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 117. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1683, R2=1752, Total=3435. Warn if over 250 bubbles per interval.
17-03-18 03:50:57.514 -07 000000561 INF: LanePump: Xmit /1Q\r
17-03-18 03:50:57.544 -07 000000561 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 03:50:57.964 -07 000000561 INF: LanePump: Xmit /1Q\r
17-03-18 03:50:57.994 -07 000000561 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 03:50:57.994 -07 000000561 INF: LanePump: Waited 2009 ms for pump motion to complete
17-03-18 03:50:57.994 -07 000000561 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 03:50:57.994 -07 000000561 INF: ===================  ===================
17-03-18 03:50:59.634 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 118, FrontChillerTemperature: 4.020806,
17-03-18 03:51:01.614 -07 000000561 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 03:51:01.614 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 117. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1683, R2=1752, Total=3435. Warn if over 250 bubbles per interval.
17-03-18 03:51:04.574 -07 000000569 INF: WaitCommand(10000) end
17-03-18 03:51:04.574 -07 000000610 INF: =================== Cycle #118, Pumping Reagent PR2 (3) ===================
17-03-18 03:51:04.574 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 250 µL, calling command Pumping to Flow Cell #1
17-03-18 03:51:04.574 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 03:51:04.614 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-18 03:51:04.614 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-18 03:51:04.614 -07 000000610 INF: =================== Cycle #118, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 03:51:04.744 -07 000000610 INF: LanePump: Xmit /1V400IP1500R\r
17-03-18 03:51:04.784 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 03:51:04.994 -07 000000382 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 118, FrontChillerTemperature: 3.973092,
17-03-18 03:51:06.614 -07 000000455 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 03:51:06.614 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 117. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1683, R2=1752, Total=3435. Warn if over 250 bubbles per interval.
17-03-18 03:51:10.364 -07 000000569 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 118, FrontChillerTemperature: 3.971733,
17-03-18 03:51:10.914 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 03:51:10.944 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 03:51:11.364 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 03:51:11.394 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 03:51:11.614 -07 000000561 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 1
17-03-18 03:51:11.614 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 117. Bubbles during last 5000 ms interval: R1=1, R2=1, Total=2. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1684, R2=1753, Total=3437. Warn if over 250 bubbles per interval.
17-03-18 03:51:11.814 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 03:51:11.844 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 03:51:12.264 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 03:51:12.294 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 03:51:12.714 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 03:51:12.744 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 03:51:12.744 -07 000000610 INF: LanePump: Waited 7959 ms for pump motion to complete
17-03-18 03:51:12.744 -07 000000610 INF: =================== Cycle #118, Pumping Reagent PR2 (3) ===================
17-03-18 03:51:12.874 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 03:51:12.904 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-18 03:51:12.904 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-18 03:51:13.034 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 03:51:13.064 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-18 03:51:13.064 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-18 03:51:13.064 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 03:51:13.194 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 03:51:13.224 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 03:51:13.654 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 03:51:13.684 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 03:51:13.684 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 03:51:13.684 -07 000000610 INF: =================== Cycle #118 ===================
17-03-18 03:51:14.904 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-18 03:51:14.904 -07 000000610 INF: ReagentValve: Go to position 1 - PumpToFlowcell start
17-03-18 03:51:14.904 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 03:51:14.924 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 03:51:14.924 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 1. Moving 2 positions.
17-03-18 03:51:14.924 -07 000000610 INF: ReagentValve: Xmit -01\r
17-03-18 03:51:15.134 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 03:51:15.154 -07 000000610 INF: ReagentValve: Recv 0198\r
17-03-18 03:51:15.154 -07 000000610 INF: ReagentValve: Move- from 3 to 1 took 408 steps, expected 408. Error = 0 steps (0.0%)
17-03-18 03:51:15.204 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 03:51:15.224 -07 000000610 INF: ReagentValve: Recv 01\r
17-03-18 03:51:15.224 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 03:51:15.324 -07 000000610 INF: =================== Cycle #118, Pumping Reagent IMT (1) ===================
17-03-18 03:51:15.324 -07 000000610 INF: LanePump: Pumping from 1, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-18 03:51:15.324 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 03:51:15.354 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-18 03:51:15.354 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-18 03:51:15.354 -07 000000610 INF: =================== Cycle #118, Pumping Reagent IMT (1), Aspirating port InputPort ===================
17-03-18 03:51:15.484 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-18 03:51:15.524 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 03:51:15.734 -07 000000561 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 118, FrontChillerTemperature: 3.983999,
17-03-18 03:51:16.614 -07 000000455 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 03:51:16.614 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 117. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1684, R2=1753, Total=3437. Warn if over 250 bubbles per interval.
17-03-18 03:51:16.964 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 03:51:16.994 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 03:51:17.414 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 03:51:17.444 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 03:51:17.444 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-18 03:51:17.444 -07 000000610 INF: =================== Cycle #118, Pumping Reagent IMT (1) ===================
17-03-18 03:51:17.574 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 03:51:17.604 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-18 03:51:17.604 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-18 03:51:17.734 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 03:51:17.764 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-18 03:51:17.764 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-18 03:51:17.764 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 03:51:17.894 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 03:51:17.924 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 03:51:18.354 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 03:51:18.384 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 03:51:18.384 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 03:51:18.384 -07 000000610 INF: =================== Cycle #118 ===================
17-03-18 03:51:19.604 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-18 03:51:19.604 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-18 03:51:19.604 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 03:51:19.624 -07 000000610 INF: ReagentValve: Recv 01\r
17-03-18 03:51:19.624 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 1 to 3. Moving 2 positions.
17-03-18 03:51:19.624 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-18 03:51:19.854 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 03:51:19.874 -07 000000610 INF: ReagentValve: Recv 01AC\r
17-03-18 03:51:19.874 -07 000000610 INF: ReagentValve: Move+ from 1 to 3 took 428 steps, expected 408. Error = 20 steps (4.9%)
17-03-18 03:51:19.924 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 03:51:19.944 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 03:51:19.944 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 03:51:20.044 -07 000000610 INF: =================== Cycle #118, Pumping Reagent PR2 (3) ===================
17-03-18 03:51:20.044 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-18 03:51:20.044 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 03:51:20.084 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-18 03:51:20.084 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-18 03:51:20.084 -07 000000610 INF: =================== Cycle #118, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 03:51:20.214 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-18 03:51:20.254 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 03:51:21.124 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 03:51:21.154 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 03:51:21.154 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-18 03:51:21.154 -07 000000610 INF: =================== Cycle #118, Pumping Reagent PR2 (3) ===================
17-03-18 03:51:21.284 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 03:51:21.314 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-18 03:51:21.314 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-18 03:51:21.444 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 03:51:21.474 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-18 03:51:21.474 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-18 03:51:21.474 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 03:51:21.604 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 03:51:21.614 -07 000000474 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 03:51:21.614 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 117. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1684, R2=1753, Total=3437. Warn if over 250 bubbles per interval.
17-03-18 03:51:21.634 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 03:51:21.764 -07 000000474 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 118, FrontChillerTemperature: 3.974486,
17-03-18 03:51:22.064 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 03:51:22.094 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 03:51:22.094 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 03:51:22.094 -07 000000610 INF: =================== Cycle #118 ===================
17-03-18 03:51:22.094 -07 000000610 INF: =================== Cycle #118, Flow Cell Temp 65° ===================
17-03-18 03:51:22.094 -07 000000610 INF: =================== Cycle #118, Flow Cell Temp 65°, FC temperature to 65° ===================
17-03-18 03:51:22.114 -07 000000626 INF: FPGA: Recv TEC2TEMP 
17-03-18 03:51:22.124 -07 000000610 INF: FPGA: 'TEC2TEMP 0 65000000' command took 1 ms to send, 0 ms to get response, and 24 ms overall
17-03-18 03:51:22.124 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-18 03:51:22.124 -07 000000626 INF: FPGA: Recv TEC2EN 
17-03-18 03:51:22.134 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:51:22.134 -07 000000610 INF: =================== Cycle #118, Flow Cell Temp 65° ===================
17-03-18 03:51:22.134 -07 000000610 INF: =================== Cycle #118 ===================
17-03-18 03:51:22.134 -07 000000610 INF: WaitCommand(30000) start
17-03-18 03:51:26.614 -07 000000590 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 03:51:26.614 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 117. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1684, R2=1753, Total=3437. Warn if over 250 bubbles per interval.
17-03-18 03:51:27.124 -07 000000382 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 118, FrontChillerTemperature: 4.003063,
17-03-18 03:51:31.614 -07 000000455 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 03:51:31.614 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 117. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1684, R2=1753, Total=3437. Warn if over 250 bubbles per interval.
17-03-18 03:51:32.494 -07 000000462 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 118, FrontChillerTemperature: 4.004458,
17-03-18 03:51:36.614 -07 000000608 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 03:51:36.614 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 117. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1684, R2=1753, Total=3437. Warn if over 250 bubbles per interval.
17-03-18 03:51:37.864 -07 000000462 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 118, FrontChillerTemperature: 3.981281,
17-03-18 03:51:41.614 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 03:51:41.614 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 117. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1684, R2=1753, Total=3437. Warn if over 250 bubbles per interval.
17-03-18 03:51:43.244 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 118, FrontChillerTemperature: 3.993549,
17-03-18 03:51:46.614 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 03:51:46.614 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 117. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1684, R2=1753, Total=3437. Warn if over 250 bubbles per interval.
17-03-18 03:51:48.604 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 118, FrontChillerTemperature: 4.001704,
17-03-18 03:51:51.614 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 03:51:51.614 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 117. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1684, R2=1753, Total=3437. Warn if over 250 bubbles per interval.
17-03-18 03:51:52.144 -07 000000610 INF: WaitCommand(30000) end
17-03-18 03:51:52.144 -07 000000610 INF: =================== Cycle #118, Pumping Reagent PR2 (3) ===================
17-03-18 03:51:52.144 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 5 µL, calling command Pumping to Flow Cell #1
17-03-18 03:51:52.224 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 03:51:52.254 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-18 03:51:52.254 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-18 03:51:52.254 -07 000000610 INF: =================== Cycle #118, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 03:51:52.384 -07 000000610 INF: LanePump: Xmit /1V400IP30R\r
17-03-18 03:51:52.424 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 03:51:52.964 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 03:51:52.994 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 03:51:52.994 -07 000000610 INF: LanePump: Waited 569 ms for pump motion to complete
17-03-18 03:51:52.994 -07 000000610 INF: =================== Cycle #118, Pumping Reagent PR2 (3) ===================
17-03-18 03:51:53.124 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 03:51:53.154 -07 000000610 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-18 03:51:53.154 -07 000000610 INF: LanePump: Current Position of Pump is: 1920
17-03-18 03:51:53.284 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 03:51:53.314 -07 000000610 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-18 03:51:53.314 -07 000000610 INF: LanePump: Current Position of Pump is: 1920
17-03-18 03:51:53.314 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 03:51:53.444 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 03:51:53.474 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 03:51:53.904 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 03:51:53.934 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 03:51:53.934 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-18 03:51:53.934 -07 000000610 INF: =================== Cycle #118 ===================
17-03-18 03:51:53.934 -07 000000512 INF: WaitCommand(30000) start
17-03-18 03:51:53.934 -07 000000626 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 03:51:53.934 -07 000000626 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-18 03:51:53.974 -07 000000591 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 118, FrontChillerTemperature: 3.986717,
17-03-18 03:51:55.154 -07 000000626 INF: AsyncDelayTimer waited 1216ms
17-03-18 03:51:55.154 -07 000000626 INF: LanePump: Xmit /1?\r
17-03-18 03:51:55.184 -07 000000626 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-18 03:51:55.184 -07 000000626 INF: LanePump: Current Position of Pump is: 1920
17-03-18 03:51:55.314 -07 000000626 INF: LanePump: Xmit /1V1500OA0R\r
17-03-18 03:51:55.354 -07 000000626 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 03:51:56.614 -07 000000590 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 03:51:56.614 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 117. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1684, R2=1753, Total=3437. Warn if over 250 bubbles per interval.
17-03-18 03:51:57.694 -07 000000626 INF: LanePump: Xmit /1Q\r
17-03-18 03:51:57.724 -07 000000626 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 03:51:58.144 -07 000000626 INF: LanePump: Xmit /1Q\r
17-03-18 03:51:58.174 -07 000000626 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 03:51:58.174 -07 000000626 INF: LanePump: Waited 2819 ms for pump motion to complete
17-03-18 03:51:58.174 -07 000000626 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 03:51:58.174 -07 000000626 INF: ===================  ===================
17-03-18 03:51:59.344 -07 000000590 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 118, FrontChillerTemperature: 4.005817,
17-03-18 03:52:01.614 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 03:52:01.614 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 117. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1684, R2=1753, Total=3437. Warn if over 250 bubbles per interval.
17-03-18 03:52:04.704 -07 000000590 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 118, FrontChillerTemperature: 4.011254,
17-03-18 03:52:06.614 -07 000000501 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 03:52:06.614 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 117. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1684, R2=1753, Total=3437. Warn if over 250 bubbles per interval.
17-03-18 03:52:10.064 -07 000000474 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 118, FrontChillerTemperature: 3.99219,
17-03-18 03:52:11.614 -07 000000591 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 03:52:11.614 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 117. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1684, R2=1753, Total=3437. Warn if over 250 bubbles per interval.
17-03-18 03:52:15.424 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 118, FrontChillerTemperature: 3.977204,
17-03-18 03:52:16.614 -07 000000561 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 03:52:16.614 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 117. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1684, R2=1753, Total=3437. Warn if over 250 bubbles per interval.
17-03-18 03:52:21.584 -07 000000502 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 118, FrontChillerTemperature: 3.975845,
17-03-18 03:52:21.614 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 03:52:21.614 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 117. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1684, R2=1753, Total=3437. Warn if over 250 bubbles per interval.
17-03-18 03:52:23.944 -07 000000512 INF: WaitCommand(30000) end
17-03-18 03:52:23.944 -07 000000610 INF: =================== Cycle #118, Flow Cell Temp 22° ===================
17-03-18 03:52:23.944 -07 000000610 INF: =================== Cycle #118, Flow Cell Temp 22°, FC temperature to 22° ===================
17-03-18 03:52:23.944 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 22000000\n [FlowCellTempControl]
17-03-18 03:52:23.954 -07 000000502 INF: FPGA: Recv TEC2TEMP 
17-03-18 03:52:23.954 -07 000000610 INF: FPGA: 'TEC2TEMP 0 22000000' command took 1 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 03:52:23.954 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-18 03:52:23.954 -07 000000502 INF: FPGA: Recv TEC2EN 
17-03-18 03:52:23.964 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 03:52:23.964 -07 000000610 INF: =================== Cycle #118, Flow Cell Temp 22° ===================
17-03-18 03:52:23.964 -07 000000610 INF: =================== Cycle #118 ===================
17-03-18 03:52:23.964 -07 000000610 INF: =================== Cycle #118, Pumping Reagent PR2 (3) ===================
17-03-18 03:52:23.964 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1
17-03-18 03:52:23.964 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 03:52:24.004 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-18 03:52:24.004 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-18 03:52:24.004 -07 000000610 INF: =================== Cycle #118, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 03:52:24.134 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r
17-03-18 03:52:24.174 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 03:52:26.614 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 2 R1 3
17-03-18 03:52:26.614 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 117. Bubbles during last 5000 ms interval: R1=3, R2=2, Total=5. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1687, R2=1755, Total=3442. Warn if over 250 bubbles per interval.
17-03-18 03:52:26.954 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 118, FrontChillerTemperature: 3.99219,
17-03-18 03:52:27.304 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 03:52:27.334 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 03:52:27.754 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 03:52:27.784 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 03:52:28.204 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 03:52:28.234 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 03:52:28.234 -07 000000610 INF: LanePump: Waited 4059 ms for pump motion to complete
17-03-18 03:52:28.234 -07 000000610 INF: =================== Cycle #118, Pumping Reagent PR2 (3) ===================
17-03-18 03:52:28.364 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 03:52:28.394 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 03:52:28.394 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 03:52:28.524 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 03:52:28.554 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 03:52:28.554 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 03:52:28.554 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 03:52:28.684 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 03:52:28.714 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 03:52:29.144 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 03:52:29.174 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 03:52:29.174 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 03:52:29.174 -07 000000610 INF: =================== Cycle #118 ===================
17-03-18 03:52:30.394 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-18 03:52:30.394 -07 000000610 INF: ReagentValve: Go to position 2 - PumpToFlowcell start
17-03-18 03:52:30.394 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 03:52:30.414 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 03:52:30.414 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 2. Moving 1 positions.
17-03-18 03:52:30.414 -07 000000610 INF: ReagentValve: Xmit -02\r
17-03-18 03:52:30.564 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 03:52:30.584 -07 000000610 INF: ReagentValve: Recv 00E3\r
17-03-18 03:52:30.584 -07 000000610 INF: ReagentValve: Move- from 3 to 2 took 227 steps, expected 204. Error = 23 steps (11.3%)
17-03-18 03:52:30.634 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 03:52:30.654 -07 000000610 INF: ReagentValve: Recv 02\r
17-03-18 03:52:30.654 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 03:52:30.754 -07 000000610 INF: =================== Cycle #118, Pumping Reagent USM (2) ===================
17-03-18 03:52:30.754 -07 000000610 INF: LanePump: Pumping from 2, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-18 03:52:30.754 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 03:52:30.784 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 03:52:30.784 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 03:52:30.784 -07 000000610 INF: =================== Cycle #118, Pumping Reagent USM (2), Aspirating port InputPort ===================
17-03-18 03:52:30.914 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-18 03:52:30.954 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 03:52:31.614 -07 000000501 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 3 R1 2
17-03-18 03:52:31.614 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 117. Bubbles during last 5000 ms interval: R1=2, R2=3, Total=5. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1689, R2=1758, Total=3447. Warn if over 250 bubbles per interval.
17-03-18 03:52:32.324 -07 000000611 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 118, FrontChillerTemperature: 4.005817,
17-03-18 03:52:32.394 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 03:52:32.424 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 03:52:32.844 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 03:52:32.874 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 03:52:32.874 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-18 03:52:32.874 -07 000000610 INF: =================== Cycle #118, Pumping Reagent USM (2) ===================
17-03-18 03:52:33.004 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 03:52:33.034 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 03:52:33.034 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 03:52:33.164 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 03:52:33.194 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 03:52:33.194 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 03:52:33.194 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 03:52:33.324 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 03:52:33.354 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 03:52:33.784 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 03:52:33.814 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 03:52:33.814 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 03:52:33.814 -07 000000610 INF: =================== Cycle #118 ===================
17-03-18 03:52:35.034 -07 000000610 INF: AsyncDelayTimer waited 1217ms
17-03-18 03:52:35.034 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-18 03:52:35.034 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 03:52:35.054 -07 000000610 INF: ReagentValve: Recv 02\r
17-03-18 03:52:35.054 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 2 to 3. Moving 1 positions.
17-03-18 03:52:35.054 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-18 03:52:35.204 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 03:52:35.224 -07 000000610 INF: ReagentValve: Recv 00E3\r
17-03-18 03:52:35.224 -07 000000610 INF: ReagentValve: Move+ from 2 to 3 took 227 steps, expected 204. Error = 23 steps (11.3%)
17-03-18 03:52:35.274 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 03:52:35.294 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 03:52:35.294 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 03:52:35.394 -07 000000610 INF: =================== Cycle #118, Pumping Reagent PR2 (3) ===================
17-03-18 03:52:35.394 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-18 03:52:35.394 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 03:52:35.424 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 03:52:35.424 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 03:52:35.424 -07 000000610 INF: =================== Cycle #118, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 03:52:35.554 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-18 03:52:35.594 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 03:52:36.464 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 03:52:36.494 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 03:52:36.494 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-18 03:52:36.494 -07 000000610 INF: =================== Cycle #118, Pumping Reagent PR2 (3) ===================
17-03-18 03:52:36.614 -07 000000590 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 03:52:36.614 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 117. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1689, R2=1758, Total=3447. Warn if over 250 bubbles per interval.
17-03-18 03:52:36.624 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 03:52:36.654 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 03:52:36.654 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-18 03:52:36.784 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 03:52:36.814 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 03:52:36.814 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-18 03:52:36.814 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 03:52:36.944 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 03:52:36.974 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 03:52:37.404 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 03:52:37.434 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 03:52:37.434 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 03:52:37.434 -07 000000610 INF: =================== Cycle #118 ===================
17-03-18 03:52:37.434 -07 000000611 INF: WaitCommand(10000) start
17-03-18 03:52:37.434 -07 000000561 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 03:52:37.434 -07 000000561 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-18 03:52:37.704 -07 000000501 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 118, FrontChillerTemperature: 4.024884,
17-03-18 03:52:38.654 -07 000000561 INF: AsyncDelayTimer waited 1215ms
17-03-18 03:52:38.654 -07 000000561 INF: LanePump: Xmit /1?\r
17-03-18 03:52:38.684 -07 000000561 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 03:52:38.684 -07 000000561 INF: LanePump: Current Position of Pump is: 1110
17-03-18 03:52:38.814 -07 000000561 INF: LanePump: Xmit /1V1500OA0R\r
17-03-18 03:52:38.854 -07 000000561 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 03:52:40.384 -07 000000561 INF: LanePump: Xmit /1Q\r
17-03-18 03:52:40.414 -07 000000561 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 03:52:40.834 -07 000000561 INF: LanePump: Xmit /1Q\r
17-03-18 03:52:40.864 -07 000000561 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 03:52:40.864 -07 000000561 INF: LanePump: Waited 2009 ms for pump motion to complete
17-03-18 03:52:40.864 -07 000000561 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 03:52:40.864 -07 000000561 INF: ===================  ===================
17-03-18 03:52:41.614 -07 000000561 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 1
17-03-18 03:52:41.614 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 117. Bubbles during last 5000 ms interval: R1=1, R2=0, Total=1. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1690, R2=1758, Total=3448. Warn if over 250 bubbles per interval.
17-03-18 03:52:43.064 -07 000000501 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 118, FrontChillerTemperature: 4.020806,
17-03-18 03:52:46.614 -07 000000474 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 03:52:46.614 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 117. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1690, R2=1758, Total=3448. Warn if over 250 bubbles per interval.
17-03-18 03:52:47.444 -07 000000611 INF: WaitCommand(10000) end
17-03-18 03:52:47.444 -07 000000610 INF: =================== Cycle #118, Imaging ===================
17-03-18 03:52:47.444 -07 000000610 INF: Imaging Cycle 118: ScanTilesCommand Cycle 118 time start.
17-03-18 03:52:47.444 -07 000000610 INF: ReagentValve: Go to position 24 (Plug) - Start of ScanTilesCommand
17-03-18 03:52:47.444 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 03:52:47.474 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 03:52:47.474 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 24. Moving 3 positions.
17-03-18 03:52:47.474 -07 000000610 INF: ReagentValve: Xmit -18\r
17-03-18 03:52:47.774 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 03:52:47.794 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-18 03:52:47.794 -07 000000610 INF: ReagentValve: Move- from 3 to 24 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-18 03:52:47.844 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 03:52:47.864 -07 000000610 INF: ReagentValve: Recv 18\r
17-03-18 03:52:47.864 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:52:47.864 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:52:47.864 -07 000000561 INF: RedLED: Snapping RedLED at power = 1930.000 mW, snap mode for ~0 ms start.
17-03-18 03:52:47.864 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:52:47.864 -07 000000561 INF: FPGA: Xmit EXLED1ON\n [RedLED]
17-03-18 03:52:47.864 -07 000000611 INF: FPGA: Recv EXLED1ON 
17-03-18 03:52:47.874 -07 000000561 INF: FPGA: 'EXLED1ON' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 03:52:47.874 -07 000000561 INF: FPGA: Xmit EXLED1ADCR\n [RedLED]
17-03-18 03:52:47.874 -07 000000462 INF: FPGA: Recv EXLED1ADCR 23136
17-03-18 03:52:47.884 -07 000000561 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:52:47.884 -07 000000561 INF: RedLED: Using Red data: Photodiode ADC 23136 --> 7.4 mW (old method), or 205.1 mW (new method). Difference = 197.6 mW
17-03-18 03:52:47.884 -07 000000561 INF: FPGA: Xmit EXLED1OFF\n [RedLED]
17-03-18 03:52:47.884 -07 000000512 INF: FPGA: Recv EXLED1OFF 
17-03-18 03:52:47.894 -07 000000561 INF: FPGA: 'EXLED1OFF' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:52:47.894 -07 000000561 INF: RedLED: LED was on for 20 ms
17-03-18 03:52:47.894 -07 000000561 INF: RedLED: Snapping RedLED at power = 1930.000 mW, snap mode for ~0 ms end. Duration was 25 ms.
17-03-18 03:52:47.894 -07 000000561 INF: GreenLED: Snapping GreenLED at power = 5964.000 mW, snap mode for ~0 ms start.
17-03-18 03:52:47.894 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:52:47.894 -07 000000561 INF: FPGA: Xmit EXLED2ON\n [GreenLED]
17-03-18 03:52:47.894 -07 000000590 INF: FPGA: Recv EXLED2ON 
17-03-18 03:52:47.904 -07 000000561 INF: FPGA: 'EXLED2ON' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 03:52:47.904 -07 000000561 INF: FPGA: Xmit EXLED1ADCR\n [GreenLED]
17-03-18 03:52:47.904 -07 000000590 INF: FPGA: Recv EXLED1ADCR 2105
17-03-18 03:52:47.914 -07 000000561 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:52:47.914 -07 000000561 INF: GreenLED: Using Green data: Photodiode ADC 2105 --> 0.9 mW (old method), or 182.9 mW (new method). Difference = 181.9 mW
17-03-18 03:52:47.914 -07 000000561 INF: FPGA: Xmit EXLED2OFF\n [GreenLED]
17-03-18 03:52:47.914 -07 000000512 INF: FPGA: Recv EXLED2OFF 
17-03-18 03:52:47.924 -07 000000561 INF: FPGA: 'EXLED2OFF' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:52:47.924 -07 000000561 INF: GreenLED: LED was on for 20 ms
17-03-18 03:52:47.924 -07 000000561 INF: GreenLED: Snapping GreenLED at power = 5964.000 mW, snap mode for ~0 ms end. Duration was 27 ms.
17-03-18 03:52:47.924 -07 000000610 INF: FPGA: Xmit EMCUR 80\n [Compensator]
17-03-18 03:52:47.924 -07 000000462 INF: FPGA: Recv EMCUR 
17-03-18 03:52:47.934 -07 000000610 INF: FPGA: 'EMCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 03:52:47.934 -07 000000610 INF: FPGA: Xmit EMOUT 20 70\n [Compensator]
17-03-18 03:52:48.434 -07 000000611 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 118, FrontChillerTemperature: 4.033041,
17-03-18 03:52:48.434 -07 000000591 INF: FPGA: Recv EMOUT
17-03-18 03:52:48.434 -07 000000610 INF: FPGA: 'EMOUT 20 70' command took 0 ms to send, 498 ms to get response, and 507 ms overall
17-03-18 03:52:48.454 -07 000000610 INF: FPGA: Xmit EMCUR 75\n [Compensator]
17-03-18 03:52:48.454 -07 000000462 INF: FPGA: Recv EMCUR 
17-03-18 03:52:48.464 -07 000000610 INF: FPGA: 'EMCUR 75' command took 0 ms to send, 0 ms to get response, and 21 ms overall
17-03-18 03:52:48.464 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 03:52:48.464 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 1 at Y-position 75.38134765625, Z-Position -0.126619079910061. ------
17-03-18 03:52:48.464 -07 000000625 INF: Y Motor: MoveYZ optimized starting. Moving Y to 59.9126 mm, moving Z to -0.17864 mm
17-03-18 03:52:48.464 -07 000000625 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 03:52:48.464 -07 000000561 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True)
17-03-18 03:52:48.464 -07 000000561 INF: Y Motor: Moving to 59.9126 mm, started at 75.3813 mm, delta = -15.4687 mm
17-03-18 03:52:48.464 -07 000000611 INF: Z Motor: Entering MoveAbsStepped (DAC = 39024, sync = True, waitForSettling = False)
17-03-18 03:52:48.464 -07 000000611 INF: Z Motor: Moving to -0.178640 mm, started at -0.126619 mm, distance = -52.02 um
17-03-18 03:52:48.484 -07 000000462 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 03:52:48.484 -07 000000474 INF: FPGA: Recv FOCMRRCUR 
17-03-18 03:52:48.494 -07 000000462 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-18 03:52:48.494 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:52:48.494 -07 000000512 INF: FPGA: Recv YRDPOS 154381
17-03-18 03:52:48.504 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-18 03:52:48.504 -07 000000561 INF: Y Motor: Encoder = 154381 = motor step 120610.2 = 75.3813 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:52:48.504 -07 000000561 INF: Y Motor: Last commanded position = 75.3806 mm (120608.9 steps), delta from last commanded position = -15.4680 mm (-24748.8 steps). UsingTableMove = False
17-03-18 03:52:48.504 -07 000000561 INF: Y Motor: Moving to 122701 encoder counts
17-03-18 03:52:48.504 -07 000000611 INF: FPGA: Xmit ZDACW 39024\n [Z Motor]
17-03-18 03:52:48.504 -07 000000591 INF: FPGA: Recv ZDACW
17-03-18 03:52:48.514 -07 000000611 INF: FPGA: 'ZDACW 39024' command took 1 ms to send, 0 ms to get response, and 40 ms overall
17-03-18 03:52:48.524 -07 000000462 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 03:52:48.534 -07 000000561 INF: FPGA: Xmit YMVTO 122701\n [Y Motor]
17-03-18 03:52:48.544 -07 000000611 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:52:48.544 -07 000000501 INF: FPGA: Recv ZDACR 39024
17-03-18 03:52:48.554 -07 000000611 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 39 ms overall
17-03-18 03:52:48.554 -07 000000611 INF: Z Motor: MoveAbsStepped took 80 ms (did NOT wait for settling yet))
17-03-18 03:52:48.724 -07 000000502 INF: FPGA: Recv FOCMRRFOC
17-03-18 03:52:48.724 -07 000000462 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 194 ms to get response, and 234 ms overall
17-03-18 03:52:50.214 -07 000000591 INF: FPGA: Recv YMVTO 122702 24778
17-03-18 03:52:50.214 -07 000000561 INF: FPGA: 'YMVTO 122701' command took 0 ms to send, 1676 ms to get response, and 1716 ms overall
17-03-18 03:52:50.214 -07 000000561 INF: Y Motor: Position error before settling = 1 encoder counts (0.000 mm)
17-03-18 03:52:50.214 -07 000000561 INF: Y Motor: To move from 75.381 to 59.913 (-15.469 mm) should take 24750 steps, but required 24778 steps (15.486 mm). Slippage = 0.018 mm (0.00%).
17-03-18 03:52:50.214 -07 000000561 INF: Y Motor: FPGA move command 'YMVTO 122701' took 1716 ms, distance = 15.469 mm, average velocity = 9.014 mm/sec
17-03-18 03:52:51.614 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 0
17-03-18 03:52:51.614 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 117. Bubbles during last 5000 ms interval: R1=0, R2=1, Total=1. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1690, R2=1759, Total=3449. Warn if over 250 bubbles per interval.
17-03-18 03:52:53.064 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:52:53.064 -07 000000474 INF: FPGA: Recv YRDPOS 122695
17-03-18 03:52:53.074 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:52:53.074 -07 000000561 INF: Y Motor: Encoder = 122695 = motor step 95855.5 = 59.9097 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:52:53.104 -07 000000561 INF: Y Motor: After move to 59.912609, error = -0.002941, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 03:52:53.104 -07 000000561 INF: Y Motor: Position error after settling = -6 encoder counts (-0.003 mm), Delta during settling = -7 counts (-0.003 mm)
17-03-18 03:52:53.104 -07 000000561 INF: Y Motor: Moved to 59.9097 after 4632 ms
17-03-18 03:52:53.104 -07 000000625 INF: Z Motor: EndOfMoveAbsStepped: target = -0.178640 mm (DAC = 39024)
17-03-18 03:52:53.104 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:52:53.104 -07 000000447 INF: FPGA: Recv ZSGSRD 37100
17-03-18 03:52:53.114 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 03:52:53.114 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:52:53.114 -07 000000618 INF: FPGA: Recv ZSGSRD 37099
17-03-18 03:52:53.124 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:52:53.124 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:52:53.124 -07 000000608 INF: FPGA: Recv ZSGSRD 37091
17-03-18 03:52:53.134 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:52:53.134 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:52:53.134 -07 000000501 INF: FPGA: Recv ZSGSRD 37100
17-03-18 03:52:53.144 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 03:52:53.144 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:52:53.144 -07 000000590 INF: FPGA: Recv ZSGSRD 37102
17-03-18 03:52:53.154 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:52:53.154 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:52:53.154 -07 000000561 INF: FPGA: Recv ZSGSRD 37095
17-03-18 03:52:53.164 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:52:53.164 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:52:53.164 -07 000000590 INF: FPGA: Recv ZSGSRD 37096
17-03-18 03:52:53.174 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:52:53.174 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:52:53.174 -07 000000501 INF: FPGA: Recv ZSGSRD 37101
17-03-18 03:52:53.184 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:52:53.184 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:52:53.184 -07 000000462 INF: FPGA: Recv ZSGSRD 37097
17-03-18 03:52:53.194 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:52:53.194 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:52:53.194 -07 000000501 INF: FPGA: Recv ZSGSRD 37101
17-03-18 03:52:53.204 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:52:53.204 -07 000000625 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:52:53.204 -07 000000590 INF: FPGA: Recv ZPIEZORD 33306
17-03-18 03:52:53.214 -07 000000625 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:52:53.214 -07 000000625 INF: Z Motor: Piezo is near 51.2 V (nominally 0 to 100 V), expect near 59.5 V, since DAC is at 5.955 V. Piezo Error = -8.4 V.
17-03-18 03:52:53.214 -07 000000625 INF: Z Motor: ReadAdcAverage: Commanded Z = -178.6 um, Read 10 ADC samples: Avg = 37098 (-177.8 uncal um), Error = 0.9 uncal um, Median = 37100 (-177.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 37091 (-177.7 uncal um), Max = 37102 (-177.8 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 03:52:53.214 -07 000000625 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37098, posNoise = 4, negNoise = 7
17-03-18 03:52:53.214 -07 000000625 INF: Z Motor: After move to -0.178640, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:52:53.214 -07 000000625 INF: Z Motor: Settle wait time = 4635 ms, measure time = 105 ms (allowed 150 ms), total time = 4740 ms
17-03-18 03:52:53.214 -07 000000625 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 03:52:53.264 -07 000000625 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 4793 ms
17-03-18 03:52:53.264 -07 000000625 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 03:52:53.264 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:52:53.264 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:52:53.264 -07 000000611 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:52:53.264 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:52:53.264 -07 000000447 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 03:52:53.264 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:52:53.264 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 03:52:53.264 -07 000000447 INF: Camera: sBCa_SetPowerMode(785074288, 1) start.
17-03-18 03:52:53.294 -07 000000447 INF: Camera: sBCa_SetPowerMode(785074288, 1) end. Duration was 23 ms.
17-03-18 03:52:53.294 -07 000000447 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 03:52:53.294 -07 000000447 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms.
17-03-18 03:52:53.294 -07 000000447 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 03:52:53.314 -07 000000447 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-18 03:52:53.314 -07 000000447 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 43 ms.
17-03-18 03:52:53.314 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 03:52:53.354 -07 000000447 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 03:52:53.654 -07 000000447 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 03:52:53.654 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 03:52:53.654 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 03:52:53.654 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1201016592, 0x0, 559484976) start.
17-03-18 03:52:53.694 -07 000000447 INF: FPGA: Recv @CAMSNAP 383
17-03-18 03:52:53.704 -07 000000447 INF: FPGA: Recv CAMSNAP
17-03-18 03:52:53.704 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 381 ms to get response, and 388 ms overall
17-03-18 03:52:53.784 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1201016592, 0x0, 559484976) end. Duration was 127 ms.
17-03-18 03:52:53.784 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:52:53.784 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 03:52:53.784 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-18 03:52:53.804 -07 000000611 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 03:52:53.804 -07 000000447 INF: Image SNR check: start
17-03-18 03:52:53.804 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-18 03:52:53.814 -07 000000611 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 03:52:53.814 -07 000000611 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 03:52:53.814 -07 000000447 INF: Image SNR check: pass  [peak (Max-Min)=146.95]
17-03-18 03:52:53.824 -07 000000447 INF: Autofocus start
17-03-18 03:52:53.824 -07 000000447 INF: MeasureProfile start
17-03-18 03:52:53.834 -07 000000447 INF: MeasureProfile done
17-03-18 03:52:53.834 -07 000000447 INF: X=-16  Z correction [um]=-0.1496812
17-03-18 03:52:53.834 -07 000000447 INF: Autofocus finished
17-03-18 03:52:53.844 -07 000000447 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 118, FrontChillerTemperature: 3.993549,
17-03-18 03:52:54.014 -07 000000502 INF: FPGA: Recv FOCMRRIMG
17-03-18 03:52:54.014 -07 000000611 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 03:52:54.014 -07 000000610 INF: ------------ Scan Snapping tile 1 at Y-position 59.90966796875, Z-position -0.178648774046183. ----------
17-03-18 03:52:54.014 -07 000000610 INF: Cycle	118	Tile	1	Exposure Settings		A	412	G	198	T	198	C	412
17-03-18 03:52:54.024 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37503, sync = True, waitForSettling = True)
17-03-18 03:52:54.024 -07 000000610 INF: Z Motor: Moving to -0.171678 mm, started at -0.178649 mm, distance = 6.97 um
17-03-18 03:52:54.024 -07 000000610 INF: FPGA: Xmit ZDACW 37503\n [Z Motor]
17-03-18 03:52:54.024 -07 000000611 INF: FPGA: Recv ZDACW
17-03-18 03:52:54.034 -07 000000610 INF: FPGA: 'ZDACW 37503' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 03:52:54.034 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:52:54.034 -07 000000447 INF: FPGA: Recv ZDACR 37503
17-03-18 03:52:54.044 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:52:54.044 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 03:52:54.194 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:52:54.194 -07 000000611 INF: FPGA: Recv ZSGSRD 36021
17-03-18 03:52:54.204 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:52:54.204 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:52:54.204 -07 000000502 INF: FPGA: Recv ZSGSRD 36012
17-03-18 03:52:54.214 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:52:54.214 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:52:54.214 -07 000000625 INF: FPGA: Recv ZSGSRD 36011
17-03-18 03:52:54.224 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:52:54.224 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:52:54.224 -07 000000447 INF: FPGA: Recv ZSGSRD 36006
17-03-18 03:52:54.234 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:52:54.234 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:52:54.234 -07 000000502 INF: FPGA: Recv ZSGSRD 36019
17-03-18 03:52:54.244 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:52:54.244 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:52:54.244 -07 000000512 INF: FPGA: Recv ZSGSRD 36012
17-03-18 03:52:54.254 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:52:54.254 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:52:54.254 -07 000000502 INF: FPGA: Recv ZSGSRD 36014
17-03-18 03:52:54.264 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:52:54.264 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:52:54.264 -07 000000512 INF: FPGA: Recv ZSGSRD 36011
17-03-18 03:52:54.274 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:52:54.274 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:52:54.274 -07 000000625 INF: FPGA: Recv ZSGSRD 36018
17-03-18 03:52:54.284 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:52:54.284 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:52:54.284 -07 000000611 INF: FPGA: Recv ZSGSRD 36012
17-03-18 03:52:54.294 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:52:54.294 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:52:54.294 -07 000000512 INF: FPGA: Recv ZPIEZORD 31835
17-03-18 03:52:54.304 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:52:54.304 -07 000000610 INF: Z Motor: Piezo is near 48.0 V (nominally 0 to 100 V), expect near 57.2 V, since DAC is at 5.723 V. Piezo Error = -9.2 V.
17-03-18 03:52:54.304 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.7 um, Read 10 ADC samples: Avg = 36014 (-170.8 uncal um), Error = 0.9 uncal um, Median = 36012 (-170.8 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 36006 (-170.8 uncal um), Max = 36021 (-170.9 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 03:52:54.304 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36014, posNoise = 7, negNoise = 8
17-03-18 03:52:54.304 -07 000000610 INF: Z Motor: After move to -0.171678, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:52:54.304 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 03:52:54.304 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:52:54.304 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:52:54.304 -07 000000625 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:52:54.304 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:52:54.304 -07 000000474 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 03:52:54.304 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:52:54.304 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 03:52:54.304 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 03:52:54.304 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 03:52:54.304 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 03:52:54.304 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 03:52:54.304 -07 000000502 INF: Camera: sBCa_SetPowerMode(785074704, 1) start.
17-03-18 03:52:54.314 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 03:52:54.314 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 03:52:54.324 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 03:52:54.324 -07 000000474 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 03:52:54.334 -07 000000502 INF: Camera: sBCa_SetPowerMode(785074704, 1) end. Duration was 23 ms.
17-03-18 03:52:54.334 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 03:52:54.334 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-18 03:52:54.334 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 03:52:54.354 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 03:52:54.354 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 44 ms.
17-03-18 03:52:54.354 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 412 412 198 198 37680 150\n [Camera]
17-03-18 03:52:54.554 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 03:52:54.964 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 604
17-03-18 03:52:54.964 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 604
17-03-18 03:52:54.964 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:52:54.964 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:52:54.964 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 2719780968, 0x0, 391868352) start.
17-03-18 03:52:54.964 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 604
17-03-18 03:52:54.964 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 604
17-03-18 03:52:54.974 -07 000000611 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:52:54.974 -07 000000611 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:52:54.974 -07 000000611 INF: Camera: sBCa_ReadImage(785074704, 2755203232, 0x0, 418435064) start.
17-03-18 03:52:55.154 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37680 797
17-03-18 03:52:55.304 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning grn on 947
17-03-18 03:52:55.364 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 2719780968, 0x0, 391868352) end. Duration was 400 ms.
17-03-18 03:52:55.364 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 03:52:55.364 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:52:55.374 -07 000000611 INF: Camera: sBCa_ReadImage(785074704, 2755203232, 0x0, 418435064) end. Duration was 400 ms.
17-03-18 03:52:55.374 -07 000000611 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 03:52:55.374 -07 000000611 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:52:55.374 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-18 03:52:55.374 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms.
17-03-18 03:52:55.374 -07 000000611 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 03:52:55.384 -07 000000611 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-18 03:52:55.504 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1145
17-03-18 03:52:55.504 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1145
17-03-18 03:52:55.504 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:52:55.504 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:52:55.504 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 2818576432, 0x0, 391868352) start.
17-03-18 03:52:55.504 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1145
17-03-18 03:52:55.504 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1145
17-03-18 03:52:55.504 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:52:55.664 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:52:55.664 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-18 03:52:55.694 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP 1338
17-03-18 03:52:55.704 -07 000000625 INF: FPGA: Recv CAMDBLSNAP
17-03-18 03:52:55.704 -07 000000610 INF: FPGA: 'CAMDBLSNAP 412 412 198 198 37680 150' command took 2 ms to send, 1340 ms to get response, and 1347 ms overall
17-03-18 03:52:55.704 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 03:52:55.704 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 2 at Y-position 59.90966796875, Z-Position -0.171684928084514. ------
17-03-18 03:52:55.704 -07 000000608 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 03:52:55.704 -07 000000611 INF: Y Motor: MoveYZ optimized starting. Moving Y to 60.7426 mm, moving Z to -0.17800 mm
17-03-18 03:52:55.704 -07 000000611 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 03:52:55.704 -07 000000625 INF: Y Motor: Entering MoveAbsStepped (target = 97188 steps, sync = True, waitForSettling = True)
17-03-18 03:52:55.704 -07 000000625 INF: Y Motor: Moving to 60.7426 mm, started at 59.9097 mm, delta = 0.8329 mm
17-03-18 03:52:55.704 -07 000000502 INF: Z Motor: Entering MoveAbsStepped (DAC = 38884, sync = True, waitForSettling = False)
17-03-18 03:52:55.704 -07 000000502 INF: Z Motor: Moving to -0.178000 mm, started at -0.171685 mm, distance = -6.31 um
17-03-18 03:52:55.704 -07 000000512 INF: FPGA: Recv FOCMRRCUR 
17-03-18 03:52:55.714 -07 000000608 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 03:52:55.714 -07 000000625 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:52:55.714 -07 000000501 INF: FPGA: Recv YRDPOS 122695
17-03-18 03:52:55.724 -07 000000502 INF: FPGA: Xmit ZDACW 38884\n [Z Motor]
17-03-18 03:52:55.724 -07 000000625 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-18 03:52:55.724 -07 000000625 INF: Y Motor: Encoder = 122695 = motor step 95855.5 = 59.9097 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:52:55.724 -07 000000625 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 03:52:55.724 -07 000000625 INF: Y Motor: Moving 1333 steps1
17-03-18 03:52:55.724 -07 000000590 INF: FPGA: Recv ZDACW
17-03-18 03:52:55.734 -07 000000608 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 03:52:55.734 -07 000000502 INF: FPGA: 'ZDACW 38884' command took 0 ms to send, 0 ms to get response, and 21 ms overall
17-03-18 03:52:55.744 -07 000000625 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 03:52:55.754 -07 000000502 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:52:55.754 -07 000000447 INF: FPGA: Recv ZDACR 38884
17-03-18 03:52:55.764 -07 000000502 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 03:52:55.764 -07 000000502 INF: Z Motor: MoveAbsStepped took 52 ms (did NOT wait for settling yet))
17-03-18 03:52:55.924 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 2818576432, 0x0, 391868352) end. Duration was 415 ms.
17-03-18 03:52:55.924 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 415 ms.
17-03-18 03:52:55.924 -07 000000474 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:52:55.924 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 03:52:55.924 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 422 ms.
17-03-18 03:52:55.934 -07 000000502 INF: FPGA: Recv FOCMRRFOC
17-03-18 03:52:55.934 -07 000000608 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 03:52:56.044 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 379 ms.
17-03-18 03:52:56.044 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-18 03:52:56.044 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:52:56.044 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-18 03:52:56.054 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 545 ms.
17-03-18 03:52:56.114 -07 000000502 INF: FPGA: Recv YMVTILE
17-03-18 03:52:56.114 -07 000000625 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 03:52:56.154 -07 000000625 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:52:56.164 -07 000000447 INF: FPGA: Recv YRDPOS 124379
17-03-18 03:52:56.164 -07 000000625 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 03:52:56.164 -07 000000625 INF: Y Motor: Encoder = 124379 = motor step 97171.1 = 60.7319 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:52:56.164 -07 000000625 INF: Y Motor: Position error before settling (table move) = -22 encoder counts (-0.011 mm)
17-03-18 03:52:56.164 -07 000000625 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.833 mm, average velocity = 2.098 mm/sec
17-03-18 03:52:56.614 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 03:52:56.614 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 117. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1690, R2=1759, Total=3449. Warn if over 250 bubbles per interval.
17-03-18 03:52:57.114 -07 000000625 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:52:57.114 -07 000000501 INF: FPGA: Recv YRDPOS 124379
17-03-18 03:52:57.124 -07 000000625 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:52:57.124 -07 000000625 INF: Y Motor: Encoder = 124379 = motor step 97171.1 = 60.7319 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:52:57.154 -07 000000625 INF: Y Motor: After move to 60.742607, error = -0.010674, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 03:52:57.154 -07 000000625 INF: Y Motor: Position error after settling (table move) = -22 encoder counts (-0.011 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 03:52:57.154 -07 000000625 INF: Y Motor: Moved to 60.7319 after 1443 ms (table move)
17-03-18 03:52:57.154 -07 000000611 INF: Z Motor: EndOfMoveAbsStepped: target = -0.178000 mm (DAC = 38884)
17-03-18 03:52:57.154 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:52:57.154 -07 000000561 INF: FPGA: Recv ZSGSRD 36994
17-03-18 03:52:57.164 -07 000000611 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 03:52:57.164 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:52:57.164 -07 000000625 INF: FPGA: Recv ZSGSRD 36996
17-03-18 03:52:57.174 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:52:57.174 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:52:57.174 -07 000000512 INF: FPGA: Recv ZSGSRD 37002
17-03-18 03:52:57.184 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:52:57.184 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:52:57.184 -07 000000625 INF: FPGA: Recv ZSGSRD 36998
17-03-18 03:52:57.194 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:52:57.194 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:52:57.194 -07 000000625 INF: FPGA: Recv ZSGSRD 37002
17-03-18 03:52:57.204 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:52:57.204 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:52:58.184 -07 000000590 INF: FPGA: Recv ZSGSRD 36997
17-03-18 03:52:58.184 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 970 ms to get response, and 980 ms overall
17-03-18 03:52:58.184 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:52:58.184 -07 000000625 INF: FPGA: Recv ZSGSRD 37009
17-03-18 03:52:58.194 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:52:58.194 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:52:58.194 -07 000000608 INF: FPGA: Recv ZSGSRD 37002
17-03-18 03:52:58.204 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:52:58.204 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:52:58.204 -07 000000512 INF: FPGA: Recv ZSGSRD 36996
17-03-18 03:52:58.214 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:52:58.214 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:52:58.214 -07 000000502 INF: FPGA: Recv ZSGSRD 36998
17-03-18 03:52:58.224 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:52:58.224 -07 000000611 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:52:58.224 -07 000000501 INF: FPGA: Recv ZPIEZORD 33179
17-03-18 03:52:58.234 -07 000000611 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:52:58.234 -07 000000611 INF: Z Motor: Piezo is near 50.9 V (nominally 0 to 100 V), expect near 59.3 V, since DAC is at 5.933 V. Piezo Error = -8.5 V.
17-03-18 03:52:58.234 -07 000000611 INF: Z Motor: ReadAdcAverage: Commanded Z = -178.0 um, Read 10 ADC samples: Avg = 36999 (-177.1 uncal um), Error = 0.9 uncal um, Median = 36998 (-177.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 36994 (-177.1 uncal um), Max = 37009 (-177.2 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 03:52:58.234 -07 000000611 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36999, posNoise = 10, negNoise = 5
17-03-18 03:52:58.234 -07 000000611 INF: Z Motor: After move to -0.178000, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:52:58.234 -07 000000611 INF: Z Motor: Settle wait time = 1446 ms, measure time = 1076 ms (allowed 150 ms), total time = 2522 ms
17-03-18 03:52:58.234 -07 000000611 INF: Z Motor: Warning: Actual position measuring time = 1076 ms, longer than max expected time of 150 ms
17-03-18 03:52:58.234 -07 000000611 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2525 ms
17-03-18 03:52:58.234 -07 000000611 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 03:52:58.234 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:52:58.234 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:52:58.234 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:52:58.234 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:52:58.234 -07 000000625 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 03:52:58.234 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:52:58.244 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 03:52:58.244 -07 000000625 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 03:52:58.244 -07 000000625 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 03:52:58.244 -07 000000625 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 03:52:58.254 -07 000000625 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-18 03:52:58.254 -07 000000625 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-18 03:52:58.254 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 03:52:58.304 -07 000000502 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 03:52:58.604 -07 000000447 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 03:52:58.604 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 03:52:58.604 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 03:52:58.604 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2334002848, 0x0, 559484976) start.
17-03-18 03:52:58.644 -07 000000590 INF: FPGA: Recv @CAMSNAP 380
17-03-18 03:52:58.644 -07 000000625 INF: FPGA: Recv CAMSNAP
17-03-18 03:52:58.644 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 373 ms to get response, and 384 ms overall
17-03-18 03:52:58.734 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2334002848, 0x0, 559484976) end. Duration was 126 ms.
17-03-18 03:52:58.734 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:52:58.734 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 03:52:58.734 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 131 ms.
17-03-18 03:52:58.744 -07 000000611 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 03:52:58.744 -07 000000512 INF: Autofocus start
17-03-18 03:52:58.744 -07 000000512 INF: MeasureProfile start
17-03-18 03:52:58.744 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-18 03:52:58.754 -07 000000611 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 03:52:58.754 -07 000000611 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 03:52:58.754 -07 000000512 INF: MeasureProfile done
17-03-18 03:52:58.754 -07 000000512 INF: X=0  Z correction [um]=-0.0713522
17-03-18 03:52:58.754 -07 000000512 INF: Autofocus finished
17-03-18 03:52:58.954 -07 000000512 INF: FPGA: Recv FOCMRRIMG
17-03-18 03:52:58.954 -07 000000611 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 03:52:58.954 -07 000000610 INF: ------------ Scan Snapping tile 2 at Y-position 60.73193359375, Z-position -0.178012777044149. ----------
17-03-18 03:52:58.954 -07 000000610 INF: Cycle	118	Tile	2	Exposure Settings		A	412	G	198	T	198	C	412
17-03-18 03:52:58.964 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37381, sync = True, waitForSettling = True)
17-03-18 03:52:58.964 -07 000000610 INF: Z Motor: Moving to -0.171119 mm, started at -0.178013 mm, distance = 6.89 um
17-03-18 03:52:58.964 -07 000000610 INF: FPGA: Xmit ZDACW 37381\n [Z Motor]
17-03-18 03:52:58.964 -07 000000608 INF: FPGA: Recv ZDACW
17-03-18 03:52:58.974 -07 000000610 INF: FPGA: 'ZDACW 37381' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 03:52:58.974 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:52:58.974 -07 000000561 INF: FPGA: Recv ZDACR 37381
17-03-18 03:52:58.984 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:52:58.984 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 03:52:59.134 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:52:59.134 -07 000000447 INF: FPGA: Recv ZSGSRD 35933
17-03-18 03:52:59.144 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:52:59.144 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:52:59.144 -07 000000611 INF: FPGA: Recv ZSGSRD 35924
17-03-18 03:52:59.154 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:52:59.154 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:52:59.154 -07 000000502 INF: FPGA: Recv ZSGSRD 35928
17-03-18 03:52:59.164 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:52:59.164 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:52:59.164 -07 000000561 INF: FPGA: Recv ZSGSRD 35923
17-03-18 03:52:59.174 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:52:59.174 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:52:59.174 -07 000000501 INF: FPGA: Recv ZSGSRD 35929
17-03-18 03:52:59.184 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:52:59.184 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:52:59.184 -07 000000608 INF: FPGA: Recv ZSGSRD 35932
17-03-18 03:52:59.194 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:52:59.204 -07 000000625 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 118, FrontChillerTemperature: 3.985358,
17-03-18 03:52:59.214 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:52:59.214 -07 000000561 INF: FPGA: Recv ZSGSRD 35929
17-03-18 03:52:59.224 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 03:52:59.244 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:52:59.244 -07 000000561 INF: FPGA: Recv ZSGSRD 35923
17-03-18 03:52:59.254 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 03:52:59.254 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:52:59.254 -07 000000501 INF: FPGA: Recv ZSGSRD 35934
17-03-18 03:52:59.264 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:52:59.284 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:52:59.284 -07 000000501 INF: FPGA: Recv ZSGSRD 35933
17-03-18 03:52:59.294 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 03:52:59.294 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:52:59.294 -07 000000512 INF: FPGA: Recv ZPIEZORD 31754
17-03-18 03:52:59.304 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:52:59.304 -07 000000610 INF: Z Motor: Piezo is near 47.8 V (nominally 0 to 100 V), expect near 57.0 V, since DAC is at 5.704 V. Piezo Error = -9.2 V.
17-03-18 03:52:59.304 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.1 um, Read 10 ADC samples: Avg = 35929 (-170.3 uncal um), Error = 0.9 uncal um, Median = 35929 (-170.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35923 (-170.2 uncal um), Max = 35934 (-170.3 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 03:52:59.304 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35929, posNoise = 5, negNoise = 6
17-03-18 03:52:59.304 -07 000000610 INF: Z Motor: After move to -0.171119, error = -0.000020, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:52:59.304 -07 000000610 INF: Z Motor: MoveAbsStepped took 339 ms)
17-03-18 03:52:59.304 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:52:59.304 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:52:59.304 -07 000000447 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:52:59.304 -07 000000590 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 03:52:59.304 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:52:59.304 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:52:59.304 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 03:52:59.304 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 03:52:59.304 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 03:52:59.304 -07 000000590 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 03:52:59.304 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 03:52:59.304 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 03:52:59.304 -07 000000590 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 03:52:59.304 -07 000000590 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 03:52:59.314 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 03:52:59.314 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 03:52:59.324 -07 000000590 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 14 ms.
17-03-18 03:52:59.324 -07 000000590 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 19 ms.
17-03-18 03:52:59.324 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms.
17-03-18 03:52:59.324 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 03:52:59.324 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 412 412 198 198 37558 150\n [Camera]
17-03-18 03:52:59.524 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 03:52:59.944 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 604
17-03-18 03:52:59.944 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 604
17-03-18 03:52:59.944 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:52:59.944 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 604
17-03-18 03:52:59.944 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 604
17-03-18 03:52:59.944 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:52:59.954 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:53:00.064 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) start.
17-03-18 03:53:00.064 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:53:00.064 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) start.
17-03-18 03:53:00.134 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37558 797
17-03-18 03:53:00.284 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP turning grn on 947
17-03-18 03:53:00.464 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) end. Duration was 396 ms.
17-03-18 03:53:00.464 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) end. Duration was 396 ms.
17-03-18 03:53:00.464 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-18 03:53:00.464 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:53:00.464 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 514 ms.
17-03-18 03:53:00.464 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:53:00.464 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 03:53:00.464 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 03:53:00.464 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 528 ms.
17-03-18 03:53:00.474 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 531 ms.
17-03-18 03:53:00.484 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1145
17-03-18 03:53:00.484 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1145
17-03-18 03:53:00.484 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:53:00.484 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1145
17-03-18 03:53:00.484 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1145
17-03-18 03:53:00.484 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:53:00.494 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:53:00.494 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-18 03:53:00.494 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:53:00.494 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2348678928, 0x0, 418435064) start.
17-03-18 03:53:00.674 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP 1337
17-03-18 03:53:00.674 -07 000000608 INF: FPGA: Recv CAMDBLSNAP
17-03-18 03:53:00.674 -07 000000610 INF: FPGA: 'CAMDBLSNAP 412 412 198 198 37558 150' command took 2 ms to send, 1333 ms to get response, and 1344 ms overall
17-03-18 03:53:00.674 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 03:53:00.674 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 3 at Y-position 60.73193359375, Z-Position -0.171138870052464. ------
17-03-18 03:53:00.684 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 03:53:00.684 -07 000000561 INF: Y Motor: MoveYZ optimized starting. Moving Y to 61.5726 mm, moving Z to -0.17778 mm
17-03-18 03:53:00.684 -07 000000561 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 03:53:00.684 -07 000000608 INF: FPGA: Recv FOCMRRCUR 
17-03-18 03:53:00.684 -07 000000462 INF: Y Motor: Entering MoveAbsStepped (target = 98516 steps, sync = True, waitForSettling = True)
17-03-18 03:53:00.684 -07 000000462 INF: Y Motor: Moving to 61.5726 mm, started at 60.7319 mm, delta = 0.8407 mm
17-03-18 03:53:00.684 -07 000000474 INF: Z Motor: Entering MoveAbsStepped (DAC = 38836, sync = True, waitForSettling = False)
17-03-18 03:53:00.684 -07 000000474 INF: Z Motor: Moving to -0.177780 mm, started at -0.171139 mm, distance = -6.64 um
17-03-18 03:53:00.694 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:00.694 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:53:00.694 -07 000000501 INF: FPGA: Recv YRDPOS 124379
17-03-18 03:53:00.704 -07 000000474 INF: FPGA: Xmit ZDACW 38836\n [Z Motor]
17-03-18 03:53:00.704 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-18 03:53:00.704 -07 000000462 INF: Y Motor: Encoder = 124379 = motor step 97171.1 = 60.7319 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:53:00.704 -07 000000462 INF: Y Motor: Last commanded position = 60.7426 mm (97188.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 03:53:00.704 -07 000000462 INF: Y Motor: Moving 1345 steps-22
17-03-18 03:53:00.704 -07 000000608 INF: FPGA: Recv ZDACW
17-03-18 03:53:00.714 -07 000000502 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 03:53:00.714 -07 000000474 INF: FPGA: 'ZDACW 38836' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-18 03:53:00.724 -07 000000462 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 03:53:00.734 -07 000000474 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:53:00.734 -07 000000611 INF: FPGA: Recv ZDACR 38836
17-03-18 03:53:00.744 -07 000000474 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 03:53:00.744 -07 000000474 INF: Z Motor: MoveAbsStepped took 53 ms (did NOT wait for settling yet))
17-03-18 03:53:00.884 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 398 ms.
17-03-18 03:53:00.884 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 03:53:00.884 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:53:00.894 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2348678928, 0x0, 418435064) end. Duration was 396 ms.
17-03-18 03:53:00.894 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-18 03:53:00.894 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:53:00.894 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 03:53:00.894 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-18 03:53:00.894 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:53:00.904 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 416 ms.
17-03-18 03:53:00.914 -07 000000625 INF: FPGA: Recv FOCMRRFOC
17-03-18 03:53:00.914 -07 000000502 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 03:53:01.104 -07 000000608 INF: FPGA: Recv YMVTILE
17-03-18 03:53:01.104 -07 000000462 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 371 ms to get response, and 400 ms overall
17-03-18 03:53:01.144 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:53:01.154 -07 000000474 INF: FPGA: Recv YRDPOS 126080
17-03-18 03:53:01.154 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 03:53:01.154 -07 000000462 INF: Y Motor: Encoder = 126080 = motor step 98500.0 = 61.5625 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:53:01.154 -07 000000462 INF: Y Motor: Position error before settling (table move) = -21 encoder counts (-0.010 mm)
17-03-18 03:53:01.154 -07 000000462 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 401 ms, distance = 0.841 mm, average velocity = 2.096 mm/sec
17-03-18 03:53:01.614 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 03:53:01.614 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 117. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1690, R2=1759, Total=3449. Warn if over 250 bubbles per interval.
17-03-18 03:53:02.104 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:53:02.104 -07 000000591 INF: FPGA: Recv YRDPOS 126080
17-03-18 03:53:02.114 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:02.114 -07 000000462 INF: Y Motor: Encoder = 126080 = motor step 98500.0 = 61.5625 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:53:02.144 -07 000000462 INF: Y Motor: After move to 61.572609, error = -0.010109, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 03:53:02.144 -07 000000462 INF: Y Motor: Position error after settling (table move) = -21 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 03:53:02.144 -07 000000462 INF: Y Motor: Moved to 61.5625 after 1454 ms (table move)
17-03-18 03:53:02.144 -07 000000561 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177780 mm (DAC = 38836)
17-03-18 03:53:02.144 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:53:02.144 -07 000000501 INF: FPGA: Recv ZSGSRD 36969
17-03-18 03:53:02.154 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 03:53:02.154 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:53:02.154 -07 000000474 INF: FPGA: Recv ZSGSRD 36961
17-03-18 03:53:02.164 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:02.164 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:53:02.164 -07 000000591 INF: FPGA: Recv ZSGSRD 36968
17-03-18 03:53:02.174 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:02.174 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:53:02.174 -07 000000012 INF: FPGA: Recv ZSGSRD 36963
17-03-18 03:53:02.184 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:02.184 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:53:02.184 -07 000000501 INF: FPGA: Recv ZSGSRD 36967
17-03-18 03:53:02.194 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:02.194 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:53:02.194 -07 000000590 INF: FPGA: Recv ZSGSRD 36970
17-03-18 03:53:02.204 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:02.204 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:53:02.204 -07 000000625 INF: FPGA: Recv ZSGSRD 36954
17-03-18 03:53:02.214 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:02.214 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:53:02.214 -07 000000611 INF: FPGA: Recv ZSGSRD 36961
17-03-18 03:53:02.224 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:02.224 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:53:02.224 -07 000000501 INF: FPGA: Recv ZSGSRD 36961
17-03-18 03:53:02.234 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:02.234 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:53:02.234 -07 000000590 INF: FPGA: Recv ZSGSRD 36963
17-03-18 03:53:02.244 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:02.244 -07 000000561 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:53:02.244 -07 000000512 INF: FPGA: Recv ZPIEZORD 33173
17-03-18 03:53:02.254 -07 000000561 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:02.254 -07 000000561 INF: Z Motor: Piezo is near 50.9 V (nominally 0 to 100 V), expect near 59.3 V, since DAC is at 5.926 V. Piezo Error = -8.4 V.
17-03-18 03:53:02.254 -07 000000561 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.8 um, Read 10 ADC samples: Avg = 36964 (-176.9 uncal um), Error = 0.9 uncal um, Median = 36963 (-176.9 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 36954 (-176.8 uncal um), Max = 36970 (-176.9 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-18 03:53:02.254 -07 000000561 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36964, posNoise = 6, negNoise = 10
17-03-18 03:53:02.254 -07 000000561 INF: Z Motor: After move to -0.177780, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:53:02.254 -07 000000561 INF: Z Motor: Settle wait time = 1458 ms, measure time = 105 ms (allowed 150 ms), total time = 1563 ms
17-03-18 03:53:02.254 -07 000000561 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 03:53:02.304 -07 000000561 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1619 ms
17-03-18 03:53:02.304 -07 000000561 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 03:53:02.304 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:53:02.304 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:53:02.304 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:53:02.304 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:53:02.304 -07 000000502 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 03:53:02.304 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:53:02.314 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 03:53:02.314 -07 000000502 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 03:53:02.314 -07 000000502 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 03:53:02.314 -07 000000502 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 03:53:02.324 -07 000000502 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 03:53:02.324 -07 000000502 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 13 ms.
17-03-18 03:53:02.324 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 03:53:02.374 -07 000000474 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 03:53:02.674 -07 000000501 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 03:53:02.674 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 03:53:02.674 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 03:53:02.674 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-18 03:53:02.704 -07 000000590 INF: FPGA: Recv @CAMSNAP 380
17-03-18 03:53:02.714 -07 000000502 INF: FPGA: Recv CAMSNAP
17-03-18 03:53:02.714 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 380 ms to get response, and 384 ms overall
17-03-18 03:53:02.784 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 03:53:02.784 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:53:02.784 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 03:53:02.784 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 03:53:02.814 -07 000000012 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 03:53:02.814 -07 000000625 INF: Autofocus start
17-03-18 03:53:02.814 -07 000000625 INF: MeasureProfile start
17-03-18 03:53:02.814 -07 000000480 INF: FPGA: Recv FOCMRRCUR 
17-03-18 03:53:02.824 -07 000000012 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 03:53:02.824 -07 000000012 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 03:53:02.824 -07 000000625 INF: MeasureProfile done
17-03-18 03:53:02.824 -07 000000625 INF: X=32  Z correction [um]=0.09220707
17-03-18 03:53:02.824 -07 000000625 INF: Autofocus finished
17-03-18 03:53:03.024 -07 000000611 INF: FPGA: Recv FOCMRRIMG
17-03-18 03:53:03.024 -07 000000012 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 03:53:03.024 -07 000000610 INF: ------------ Scan Snapping tile 3 at Y-position 61.5625, Z-position -0.177787929619187. ----------
17-03-18 03:53:03.024 -07 000000610 INF: Cycle	118	Tile	3	Exposure Settings		A	412	G	198	T	198	C	412
17-03-18 03:53:03.034 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37369, sync = True, waitForSettling = True)
17-03-18 03:53:03.034 -07 000000610 INF: Z Motor: Moving to -0.171064 mm, started at -0.177788 mm, distance = 6.72 um
17-03-18 03:53:03.034 -07 000000610 INF: FPGA: Xmit ZDACW 37369\n [Z Motor]
17-03-18 03:53:03.034 -07 000000462 INF: FPGA: Recv ZDACW
17-03-18 03:53:03.044 -07 000000610 INF: FPGA: 'ZDACW 37369' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 03:53:03.044 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:53:03.044 -07 000000591 INF: FPGA: Recv ZDACR 37369
17-03-18 03:53:03.054 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:03.054 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 03:53:03.204 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:53:03.204 -07 000000618 INF: FPGA: Recv ZSGSRD 35917
17-03-18 03:53:03.214 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:03.214 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:53:03.214 -07 000000474 INF: FPGA: Recv ZSGSRD 35923
17-03-18 03:53:03.224 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:03.224 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:53:03.224 -07 000000462 INF: FPGA: Recv ZSGSRD 35917
17-03-18 03:53:03.234 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:03.234 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:53:03.234 -07 000000480 INF: FPGA: Recv ZSGSRD 35923
17-03-18 03:53:03.244 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:03.244 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:53:03.244 -07 000000611 INF: FPGA: Recv ZSGSRD 35924
17-03-18 03:53:03.254 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:03.254 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:53:03.254 -07 000000590 INF: FPGA: Recv ZSGSRD 35916
17-03-18 03:53:03.264 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:03.264 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:53:03.264 -07 000000501 INF: FPGA: Recv ZSGSRD 35916
17-03-18 03:53:03.274 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:03.274 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:53:03.274 -07 000000480 INF: FPGA: Recv ZSGSRD 35922
17-03-18 03:53:03.284 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:03.284 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:53:03.284 -07 000000611 INF: FPGA: Recv ZSGSRD 35920
17-03-18 03:53:03.294 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:03.294 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:53:03.294 -07 000000462 INF: FPGA: Recv ZSGSRD 35923
17-03-18 03:53:03.304 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:03.304 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:53:03.304 -07 000000447 INF: FPGA: Recv ZPIEZORD 31766
17-03-18 03:53:03.314 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:03.314 -07 000000610 INF: Z Motor: Piezo is near 47.9 V (nominally 0 to 100 V), expect near 57.0 V, since DAC is at 5.702 V. Piezo Error = -9.2 V.
17-03-18 03:53:03.314 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.1 um, Read 10 ADC samples: Avg = 35920 (-170.2 uncal um), Error = 0.9 uncal um, Median = 35921 (-170.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35916 (-170.2 uncal um), Max = 35924 (-170.2 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 03:53:03.314 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35920, posNoise = 4, negNoise = 4
17-03-18 03:53:03.314 -07 000000610 INF: Z Motor: After move to -0.171064, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:53:03.314 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 03:53:03.314 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:53:03.314 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:53:03.324 -07 000000474 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:53:03.324 -07 000000591 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 03:53:03.324 -07 000000625 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:53:03.324 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:53:03.324 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 03:53:03.324 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 03:53:03.324 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 03:53:03.324 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 03:53:03.324 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 03:53:03.324 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 03:53:03.324 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-18 03:53:03.324 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 03:53:03.324 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 03:53:03.324 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 03:53:03.344 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 03:53:03.344 -07 000000591 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 03:53:03.344 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-18 03:53:03.344 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 03:53:03.344 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 412 412 198 198 37545 150\n [Camera]
17-03-18 03:53:03.544 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 03:53:03.954 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 604
17-03-18 03:53:03.954 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 604
17-03-18 03:53:03.964 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:53:03.964 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 604
17-03-18 03:53:03.964 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 604
17-03-18 03:53:03.964 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:53:03.964 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:53:03.964 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 03:53:03.964 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:53:03.964 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 2620985504, 0x0, 391868352) start.
17-03-18 03:53:04.154 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37545 797
17-03-18 03:53:04.304 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP turning grn on 950
17-03-18 03:53:04.364 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 2620985504, 0x0, 391868352) end. Duration was 394 ms.
17-03-18 03:53:04.364 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 03:53:04.364 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:53:04.364 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 398 ms.
17-03-18 03:53:04.364 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 03:53:04.364 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:53:04.364 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:53:04.364 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 408 ms.
17-03-18 03:53:04.374 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:53:04.374 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-18 03:53:04.504 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1145
17-03-18 03:53:04.504 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1145
17-03-18 03:53:04.504 -07 000000611 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:53:04.504 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1145
17-03-18 03:53:04.504 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1145
17-03-18 03:53:04.504 -07 000000611 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:53:04.504 -07 000000611 INF: Camera: sBCa_ReadImage(785074288, 2162365984, 0x0, 391868352) start.
17-03-18 03:53:04.504 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:53:04.504 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:53:04.504 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 2197788248, 0x0, 418435064) start.
17-03-18 03:53:04.604 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 118, FrontChillerTemperature: 3.993549,
17-03-18 03:53:04.694 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP 1338
17-03-18 03:53:04.694 -07 000000502 INF: FPGA: Recv CAMDBLSNAP
17-03-18 03:53:04.694 -07 000000610 INF: FPGA: 'CAMDBLSNAP 412 412 198 198 37545 150' command took 2 ms to send, 1342 ms to get response, and 1345 ms overall
17-03-18 03:53:04.694 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 03:53:04.694 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 4 at Y-position 61.5625, Z-Position -0.171081052143189. ------
17-03-18 03:53:04.694 -07 000000608 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 03:53:04.694 -07 000000512 INF: Y Motor: MoveYZ optimized starting. Moving Y to 62.4026 mm, moving Z to -0.17739 mm
17-03-18 03:53:04.694 -07 000000512 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 03:53:04.704 -07 000000462 INF: Y Motor: Entering MoveAbsStepped (target = 99844 steps, sync = True, waitForSettling = True)
17-03-18 03:53:04.704 -07 000000462 INF: Y Motor: Moving to 62.4026 mm, started at 61.5625 mm, delta = 0.8401 mm
17-03-18 03:53:04.704 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:53:04.704 -07 000000618 INF: Z Motor: Entering MoveAbsStepped (DAC = 38751, sync = True, waitForSettling = False)
17-03-18 03:53:04.704 -07 000000618 INF: Z Motor: Moving to -0.177391 mm, started at -0.171081 mm, distance = -6.31 um
17-03-18 03:53:04.704 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-18 03:53:04.704 -07 000000608 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 4 ms overall
17-03-18 03:53:04.704 -07 000000012 INF: FPGA: Recv YRDPOS 126081
17-03-18 03:53:04.714 -07 000000608 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 03:53:04.714 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 03:53:04.714 -07 000000462 INF: Y Motor: Encoder = 126081 = motor step 98500.8 = 61.5630 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:53:04.714 -07 000000462 INF: Y Motor: Last commanded position = 61.5726 mm (98516.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 03:53:04.714 -07 000000462 INF: Y Motor: Moving 1343 steps-21
17-03-18 03:53:04.724 -07 000000618 INF: FPGA: Xmit ZDACW 38751\n [Z Motor]
17-03-18 03:53:04.724 -07 000000012 INF: FPGA: Recv ZDACW
17-03-18 03:53:04.734 -07 000000618 INF: FPGA: 'ZDACW 38751' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-18 03:53:04.734 -07 000000462 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 03:53:04.744 -07 000000618 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:53:04.744 -07 000000502 INF: FPGA: Recv ZDACR 38751
17-03-18 03:53:04.754 -07 000000618 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 03:53:04.754 -07 000000618 INF: Z Motor: MoveAbsStepped took 48 ms (did NOT wait for settling yet))
17-03-18 03:53:04.894 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 2197788248, 0x0, 418435064) end. Duration was 390 ms.
17-03-18 03:53:04.894 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-18 03:53:04.894 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:53:04.904 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:53:04.904 -07 000000611 INF: Camera: sBCa_ReadImage(785074288, 2162365984, 0x0, 391868352) end. Duration was 397 ms.
17-03-18 03:53:04.904 -07 000000611 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 03:53:04.904 -07 000000611 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:53:04.904 -07 000000611 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:53:04.904 -07 000000611 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 03:53:04.914 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-18 03:53:04.914 -07 000000502 INF: FPGA: Recv FOCMRRFOC
17-03-18 03:53:04.914 -07 000000608 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 194 ms to get response, and 211 ms overall
17-03-18 03:53:05.104 -07 000000618 INF: FPGA: Recv YMVTILE
17-03-18 03:53:05.104 -07 000000462 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 391 ms overall
17-03-18 03:53:05.154 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:53:05.154 -07 000000502 INF: FPGA: Recv YRDPOS 127784
17-03-18 03:53:05.164 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 03:53:05.164 -07 000000462 INF: Y Motor: Encoder = 127784 = motor step 99831.3 = 62.3945 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:53:05.164 -07 000000462 INF: Y Motor: Position error before settling (table move) = -17 encoder counts (-0.008 mm)
17-03-18 03:53:05.164 -07 000000462 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 391 ms, distance = 0.840 mm, average velocity = 2.149 mm/sec
17-03-18 03:53:06.114 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:53:06.114 -07 000000590 INF: FPGA: Recv YRDPOS 127784
17-03-18 03:53:06.124 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:06.124 -07 000000462 INF: Y Motor: Encoder = 127784 = motor step 99831.3 = 62.3945 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:53:06.154 -07 000000462 INF: Y Motor: After move to 62.402607, error = -0.008076, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 03:53:06.154 -07 000000462 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 03:53:06.154 -07 000000462 INF: Y Motor: Moved to 62.3945 after 1450 ms (table move)
17-03-18 03:53:06.154 -07 000000512 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177391 mm (DAC = 38751)
17-03-18 03:53:06.154 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:53:06.154 -07 000000502 INF: FPGA: Recv ZSGSRD 36908
17-03-18 03:53:06.164 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 03:53:06.164 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:53:06.164 -07 000000012 INF: FPGA: Recv ZSGSRD 36902
17-03-18 03:53:06.174 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:06.174 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:53:06.174 -07 000000462 INF: FPGA: Recv ZSGSRD 36904
17-03-18 03:53:06.184 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:06.184 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:53:06.184 -07 000000618 INF: FPGA: Recv ZSGSRD 36901
17-03-18 03:53:06.194 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:06.194 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:53:06.194 -07 000000502 INF: FPGA: Recv ZSGSRD 36902
17-03-18 03:53:06.204 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:06.204 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:53:06.204 -07 000000618 INF: FPGA: Recv ZSGSRD 36901
17-03-18 03:53:06.214 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:06.214 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:53:06.214 -07 000000611 INF: FPGA: Recv ZSGSRD 36898
17-03-18 03:53:06.224 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:06.224 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:53:06.224 -07 000000590 INF: FPGA: Recv ZSGSRD 36905
17-03-18 03:53:06.234 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:06.234 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:53:06.234 -07 000000462 INF: FPGA: Recv ZSGSRD 36903
17-03-18 03:53:06.244 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:06.244 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:53:06.244 -07 000000618 INF: FPGA: Recv ZSGSRD 36908
17-03-18 03:53:06.254 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:06.254 -07 000000512 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:53:06.254 -07 000000590 INF: FPGA: Recv ZPIEZORD 33075
17-03-18 03:53:06.264 -07 000000512 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:06.264 -07 000000512 INF: Z Motor: Piezo is near 50.7 V (nominally 0 to 100 V), expect near 59.1 V, since DAC is at 5.913 V. Piezo Error = -8.5 V.
17-03-18 03:53:06.264 -07 000000512 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.4 um, Read 10 ADC samples: Avg = 36903 (-176.5 uncal um), Error = 0.9 uncal um, Median = 36902 (-176.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 36898 (-176.5 uncal um), Max = 36908 (-176.5 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 03:53:06.264 -07 000000512 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36903, posNoise = 5, negNoise = 5
17-03-18 03:53:06.264 -07 000000512 INF: Z Motor: After move to -0.177391, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:53:06.264 -07 000000512 INF: Z Motor: Settle wait time = 1453 ms, measure time = 105 ms (allowed 150 ms), total time = 1558 ms
17-03-18 03:53:06.264 -07 000000512 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 03:53:06.314 -07 000000512 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1611 ms
17-03-18 03:53:06.314 -07 000000512 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 03:53:06.314 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:53:06.314 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:53:06.314 -07 000000608 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:53:06.314 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:53:06.314 -07 000000012 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 03:53:06.314 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:53:06.314 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 03:53:06.314 -07 000000012 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 03:53:06.324 -07 000000012 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 03:53:06.324 -07 000000012 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 03:53:06.334 -07 000000012 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 8 ms.
17-03-18 03:53:06.334 -07 000000012 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 13 ms.
17-03-18 03:53:06.334 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 03:53:06.374 -07 000000590 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 03:53:06.614 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 03:53:06.614 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 117. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1690, R2=1759, Total=3449. Warn if over 250 bubbles per interval.
17-03-18 03:53:06.674 -07 000000502 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 03:53:06.674 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 03:53:06.674 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 03:53:06.684 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2147487792, 0x0, 559484976) start.
17-03-18 03:53:06.714 -07 000000012 INF: FPGA: Recv @CAMSNAP 380
17-03-18 03:53:06.714 -07 000000608 INF: FPGA: Recv CAMSNAP
17-03-18 03:53:06.714 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 378 ms to get response, and 384 ms overall
17-03-18 03:53:06.794 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2147487792, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 03:53:06.794 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:53:06.794 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-18 03:53:06.794 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 121 ms.
17-03-18 03:53:06.814 -07 000000608 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 03:53:06.814 -07 000000618 INF: Autofocus start
17-03-18 03:53:06.814 -07 000000618 INF: MeasureProfile start
17-03-18 03:53:06.814 -07 000000012 INF: FPGA: Recv FOCMRRCUR 
17-03-18 03:53:06.824 -07 000000608 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 03:53:06.824 -07 000000608 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 03:53:06.824 -07 000000618 INF: MeasureProfile done
17-03-18 03:53:06.824 -07 000000618 INF: X=-16  Z correction [um]=-0.1496812
17-03-18 03:53:06.824 -07 000000618 INF: Autofocus finished
17-03-18 03:53:07.024 -07 000000590 INF: FPGA: Recv FOCMRRIMG
17-03-18 03:53:07.024 -07 000000608 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 03:53:07.024 -07 000000610 INF: ------------ Scan Snapping tile 4 at Y-position 62.39453125, Z-position -0.17739605267854. ----------
17-03-18 03:53:07.024 -07 000000610 INF: Cycle	118	Tile	4	Exposure Settings		A	412	G	198	T	198	C	412
17-03-18 03:53:07.034 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37231, sync = True, waitForSettling = True)
17-03-18 03:53:07.034 -07 000000610 INF: Z Motor: Moving to -0.170433 mm, started at -0.177396 mm, distance = 6.96 um
17-03-18 03:53:07.034 -07 000000610 INF: FPGA: Xmit ZDACW 37231\n [Z Motor]
17-03-18 03:53:07.034 -07 000000611 INF: FPGA: Recv ZDACW
17-03-18 03:53:07.044 -07 000000610 INF: FPGA: 'ZDACW 37231' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 03:53:07.044 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:53:07.044 -07 000000012 INF: FPGA: Recv ZDACR 37231
17-03-18 03:53:07.054 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:07.054 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 03:53:07.204 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:53:07.204 -07 000000611 INF: FPGA: Recv ZSGSRD 35820
17-03-18 03:53:07.214 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:07.214 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:53:07.214 -07 000000590 INF: FPGA: Recv ZSGSRD 35820
17-03-18 03:53:07.224 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:07.224 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:53:07.224 -07 000000462 INF: FPGA: Recv ZSGSRD 35820
17-03-18 03:53:07.234 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:07.234 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:53:07.234 -07 000000012 INF: FPGA: Recv ZSGSRD 35817
17-03-18 03:53:07.244 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:53:07.244 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:53:07.244 -07 000000462 INF: FPGA: Recv ZSGSRD 35822
17-03-18 03:53:07.254 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:07.254 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:53:07.254 -07 000000012 INF: FPGA: Recv ZSGSRD 35820
17-03-18 03:53:07.264 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:07.264 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:53:07.264 -07 000000512 INF: FPGA: Recv ZSGSRD 35822
17-03-18 03:53:07.274 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:07.274 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:53:07.274 -07 000000608 INF: FPGA: Recv ZSGSRD 35827
17-03-18 03:53:07.284 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:07.284 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:53:07.284 -07 000000590 INF: FPGA: Recv ZSGSRD 35821
17-03-18 03:53:07.294 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:07.294 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:53:07.294 -07 000000502 INF: FPGA: Recv ZSGSRD 35820
17-03-18 03:53:07.304 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:07.304 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:53:07.304 -07 000000512 INF: FPGA: Recv ZPIEZORD 31607
17-03-18 03:53:07.314 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:07.314 -07 000000610 INF: Z Motor: Piezo is near 47.5 V (nominally 0 to 100 V), expect near 56.8 V, since DAC is at 5.681 V. Piezo Error = -9.3 V.
17-03-18 03:53:07.314 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.4 um, Read 10 ADC samples: Avg = 35821 (-169.6 uncal um), Error = 0.9 uncal um, Median = 35820 (-169.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35817 (-169.5 uncal um), Max = 35827 (-169.6 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 03:53:07.314 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35821, posNoise = 6, negNoise = 4
17-03-18 03:53:07.314 -07 000000610 INF: Z Motor: After move to -0.170433, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:53:07.314 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 03:53:07.314 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:53:07.314 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:53:07.314 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:53:07.314 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:53:07.314 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 03:53:07.314 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:53:07.314 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 03:53:07.314 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 03:53:07.314 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 03:53:07.314 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 03:53:07.314 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 03:53:07.314 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 03:53:07.324 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 03:53:07.324 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 03:53:07.324 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 03:53:07.324 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 03:53:07.334 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 03:53:07.334 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 03:53:07.334 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 03:53:07.334 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 03:53:07.334 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 412 412 198 198 37407 150\n [Camera]
17-03-18 03:53:07.534 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 03:53:07.944 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 604
17-03-18 03:53:07.944 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 604
17-03-18 03:53:07.944 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:53:07.944 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:53:07.944 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 2233210512, 0x0, 391868352) start.
17-03-18 03:53:07.944 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 604
17-03-18 03:53:07.944 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 604
17-03-18 03:53:07.944 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:53:07.944 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:53:07.944 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 03:53:08.134 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37407 797
17-03-18 03:53:08.284 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP turning grn on 947
17-03-18 03:53:08.334 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 383 ms.
17-03-18 03:53:08.334 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-18 03:53:08.334 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:53:08.334 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 2233210512, 0x0, 391868352) end. Duration was 388 ms.
17-03-18 03:53:08.334 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-18 03:53:08.334 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:53:08.334 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:53:08.344 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:53:08.344 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-18 03:53:08.344 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 03:53:08.484 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1145
17-03-18 03:53:08.484 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1145
17-03-18 03:53:08.484 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:53:08.484 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:53:08.484 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) start.
17-03-18 03:53:08.494 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1145
17-03-18 03:53:08.494 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1145
17-03-18 03:53:08.494 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:53:08.494 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:53:08.494 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) start.
17-03-18 03:53:08.674 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP 1337
17-03-18 03:53:08.674 -07 000000512 INF: FPGA: Recv CAMDBLSNAP
17-03-18 03:53:08.674 -07 000000610 INF: FPGA: 'CAMDBLSNAP 412 412 198 198 37407 150' command took 2 ms to send, 1338 ms to get response, and 1344 ms overall
17-03-18 03:53:08.684 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 03:53:08.684 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 5 at Y-position 62.39453125, Z-Position -0.170445055141154. ------
17-03-18 03:53:08.684 -07 000000462 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 03:53:08.684 -07 000000012 INF: Y Motor: MoveYZ optimized starting. Moving Y to 63.2326 mm, moving Z to -0.17692 mm
17-03-18 03:53:08.684 -07 000000012 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 03:53:08.684 -07 000000611 INF: Y Motor: Entering MoveAbsStepped (target = 101172 steps, sync = True, waitForSettling = True)
17-03-18 03:53:08.684 -07 000000611 INF: Y Motor: Moving to 63.2326 mm, started at 62.3945 mm, delta = 0.8381 mm
17-03-18 03:53:08.684 -07 000000502 INF: Z Motor: Entering MoveAbsStepped (DAC = 38648, sync = True, waitForSettling = False)
17-03-18 03:53:08.684 -07 000000502 INF: Z Motor: Moving to -0.176919 mm, started at -0.170445 mm, distance = -6.47 um
17-03-18 03:53:08.694 -07 000000502 INF: FPGA: Xmit ZDACW 38648\n [Z Motor]
17-03-18 03:53:08.694 -07 000000608 INF: FPGA: Recv FOCMRRCUR 
17-03-18 03:53:08.694 -07 000000462 INF: FPGA: 'FOCMRRCUR 80' command took 1 ms to send, 1 ms to get response, and 8 ms overall
17-03-18 03:53:08.694 -07 000000512 INF: FPGA: Recv ZDACW
17-03-18 03:53:08.704 -07 000000502 INF: FPGA: 'ZDACW 38648' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:53:08.704 -07 000000611 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:53:08.704 -07 000000480 INF: FPGA: Recv YRDPOS 127784
17-03-18 03:53:08.714 -07 000000462 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 03:53:08.714 -07 000000611 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 21 ms overall
17-03-18 03:53:08.714 -07 000000611 INF: Y Motor: Encoder = 127784 = motor step 99831.3 = 62.3945 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:53:08.714 -07 000000611 INF: Y Motor: Last commanded position = 62.4026 mm (99844.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 03:53:08.714 -07 000000611 INF: Y Motor: Moving 1341 steps-17
17-03-18 03:53:08.724 -07 000000502 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:53:08.724 -07 000000608 INF: FPGA: Recv ZDACR 38648
17-03-18 03:53:08.734 -07 000000611 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 03:53:08.734 -07 000000502 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 03:53:08.734 -07 000000502 INF: Z Motor: MoveAbsStepped took 41 ms (did NOT wait for settling yet))
17-03-18 03:53:08.894 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) end. Duration was 404 ms.
17-03-18 03:53:08.894 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-18 03:53:08.894 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:53:08.894 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) end. Duration was 401 ms.
17-03-18 03:53:08.894 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 03:53:08.894 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:53:08.894 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:53:08.894 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 03:53:08.894 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 413 ms.
17-03-18 03:53:08.904 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-18 03:53:08.914 -07 000000590 INF: FPGA: Recv FOCMRRFOC
17-03-18 03:53:08.914 -07 000000462 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 220 ms overall
17-03-18 03:53:09.104 -07 000000512 INF: FPGA: Recv YMVTILE
17-03-18 03:53:09.104 -07 000000611 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 03:53:09.154 -07 000000611 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:53:09.154 -07 000000625 INF: FPGA: Recv YRDPOS 129480
17-03-18 03:53:09.164 -07 000000611 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 03:53:09.164 -07 000000611 INF: Y Motor: Encoder = 129480 = motor step 101156.3 = 63.2227 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:53:09.164 -07 000000611 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-18 03:53:09.164 -07 000000611 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.838 mm, average velocity = 2.111 mm/sec
17-03-18 03:53:09.964 -07 000000590 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 118, FrontChillerTemperature: 4.005817,
17-03-18 03:53:10.114 -07 000000611 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:53:10.114 -07 000000608 INF: FPGA: Recv YRDPOS 129481
17-03-18 03:53:10.124 -07 000000611 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:53:10.124 -07 000000611 INF: Y Motor: Encoder = 129481 = motor step 101157.0 = 63.2231 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:53:10.154 -07 000000611 INF: Y Motor: After move to 63.232609, error = -0.009464, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 03:53:10.154 -07 000000611 INF: Y Motor: Position error after settling (table move) = -19 encoder counts (-0.009 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 03:53:10.154 -07 000000611 INF: Y Motor: Moved to 63.2231 after 1466 ms (table move)
17-03-18 03:53:10.154 -07 000000012 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176919 mm (DAC = 38648)
17-03-18 03:53:10.154 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:53:10.164 -07 000000618 INF: FPGA: Recv ZSGSRD 36839
17-03-18 03:53:10.164 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-18 03:53:10.164 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:53:10.164 -07 000000480 INF: FPGA: Recv ZSGSRD 36819
17-03-18 03:53:10.174 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 03:53:10.174 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:53:10.174 -07 000000590 INF: FPGA: Recv ZSGSRD 36829
17-03-18 03:53:10.184 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:10.184 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:53:10.184 -07 000000480 INF: FPGA: Recv ZSGSRD 36834
17-03-18 03:53:10.194 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:10.194 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:53:10.194 -07 000000590 INF: FPGA: Recv ZSGSRD 36830
17-03-18 03:53:10.204 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:10.204 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:53:10.204 -07 000000611 INF: FPGA: Recv ZSGSRD 36828
17-03-18 03:53:10.214 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:10.214 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:53:10.214 -07 000000608 INF: FPGA: Recv ZSGSRD 36829
17-03-18 03:53:10.224 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:10.224 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:53:10.224 -07 000000625 INF: FPGA: Recv ZSGSRD 36826
17-03-18 03:53:10.234 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:10.234 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:53:10.234 -07 000000608 INF: FPGA: Recv ZSGSRD 36825
17-03-18 03:53:10.244 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:10.244 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:53:10.244 -07 000000611 INF: FPGA: Recv ZSGSRD 36831
17-03-18 03:53:10.254 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:10.254 -07 000000012 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:53:10.254 -07 000000480 INF: FPGA: Recv ZPIEZORD 32956
17-03-18 03:53:10.264 -07 000000012 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:10.264 -07 000000012 INF: Z Motor: Piezo is near 50.4 V (nominally 0 to 100 V), expect near 59.0 V, since DAC is at 5.897 V. Piezo Error = -8.6 V.
17-03-18 03:53:10.264 -07 000000012 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.9 um, Read 10 ADC samples: Avg = 36829 (-176.0 uncal um), Error = 0.9 uncal um, Median = 36829 (-176.0 uncal um), StdDev = 5 (0.0 uncal um), Range = 20 (0.1 uncal um), Min = 36819 (-176.0 uncal um), Max = 36839 (-176.1 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-18 03:53:10.264 -07 000000012 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36829, posNoise = 10, negNoise = 10
17-03-18 03:53:10.264 -07 000000012 INF: Z Motor: After move to -0.176919, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:53:10.264 -07 000000012 INF: Z Motor: Settle wait time = 1469 ms, measure time = 102 ms (allowed 150 ms), total time = 1571 ms
17-03-18 03:53:10.264 -07 000000012 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-18 03:53:10.314 -07 000000012 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1624 ms
17-03-18 03:53:10.314 -07 000000012 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 03:53:10.314 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:53:10.314 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:53:10.314 -07 000000590 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:53:10.314 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:53:10.314 -07 000000608 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 03:53:10.314 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:53:10.314 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 03:53:10.314 -07 000000608 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 03:53:10.324 -07 000000608 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 03:53:10.324 -07 000000608 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 03:53:10.324 -07 000000608 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 03:53:10.324 -07 000000608 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-18 03:53:10.334 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 03:53:10.374 -07 000000480 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 03:53:10.674 -07 000000590 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 03:53:10.674 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 03:53:10.674 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 03:53:10.674 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2268632776, 0x0, 559484976) start.
17-03-18 03:53:10.714 -07 000000590 INF: FPGA: Recv @CAMSNAP 380
17-03-18 03:53:10.714 -07 000000012 INF: FPGA: Recv CAMSNAP
17-03-18 03:53:10.714 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 03:53:10.794 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2268632776, 0x0, 559484976) end. Duration was 117 ms.
17-03-18 03:53:10.794 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:53:10.794 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 03:53:10.794 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-18 03:53:10.814 -07 000000608 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 03:53:10.814 -07 000000590 INF: Autofocus start
17-03-18 03:53:10.814 -07 000000590 INF: MeasureProfile start
17-03-18 03:53:10.814 -07 000000611 INF: FPGA: Recv FOCMRRCUR 
17-03-18 03:53:10.824 -07 000000608 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 03:53:10.824 -07 000000608 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 03:53:10.834 -07 000000590 INF: MeasureProfile done
17-03-18 03:53:10.834 -07 000000590 INF: X=48  Z correction [um]=0.1739867
17-03-18 03:53:10.834 -07 000000590 INF: Autofocus finished
17-03-18 03:53:11.024 -07 000000611 INF: FPGA: Recv FOCMRRIMG
17-03-18 03:53:11.024 -07 000000608 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 204 ms overall
17-03-18 03:53:11.024 -07 000000610 INF: ------------ Scan Snapping tile 5 at Y-position 63.22314453125, Z-position -0.176920660980049. ----------
17-03-18 03:53:11.024 -07 000000610 INF: Cycle	118	Tile	5	Exposure Settings		A	412	G	198	T	198	C	412
17-03-18 03:53:11.034 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37198, sync = True, waitForSettling = True)
17-03-18 03:53:11.034 -07 000000610 INF: Z Motor: Moving to -0.170282 mm, started at -0.176921 mm, distance = 6.64 um
17-03-18 03:53:11.034 -07 000000610 INF: FPGA: Xmit ZDACW 37198\n [Z Motor]
17-03-18 03:53:11.034 -07 000000591 INF: FPGA: Recv ZDACW
17-03-18 03:53:11.044 -07 000000610 INF: FPGA: 'ZDACW 37198' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 03:53:11.044 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:53:11.044 -07 000000474 INF: FPGA: Recv ZDACR 37198
17-03-18 03:53:11.054 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:11.054 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 03:53:11.204 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:53:11.204 -07 000000474 INF: FPGA: Recv ZSGSRD 35797
17-03-18 03:53:11.214 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:11.214 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:53:11.214 -07 000000474 INF: FPGA: Recv ZSGSRD 35796
17-03-18 03:53:11.224 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:11.224 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:53:11.224 -07 000000474 INF: FPGA: Recv ZSGSRD 35797
17-03-18 03:53:11.234 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:11.234 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:53:11.234 -07 000000474 INF: FPGA: Recv ZSGSRD 35798
17-03-18 03:53:11.244 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:11.244 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:53:11.244 -07 000000625 INF: FPGA: Recv ZSGSRD 35796
17-03-18 03:53:11.254 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:11.254 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:53:11.254 -07 000000625 INF: FPGA: Recv ZSGSRD 35805
17-03-18 03:53:11.264 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:11.264 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:53:11.264 -07 000000474 INF: FPGA: Recv ZSGSRD 35795
17-03-18 03:53:11.274 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:11.274 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:53:11.274 -07 000000474 INF: FPGA: Recv ZSGSRD 35796
17-03-18 03:53:11.284 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:11.284 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:53:11.284 -07 000000474 INF: FPGA: Recv ZSGSRD 35798
17-03-18 03:53:11.294 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:11.294 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:53:11.294 -07 000000590 INF: FPGA: Recv ZSGSRD 35802
17-03-18 03:53:11.304 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:11.304 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:53:11.304 -07 000000474 INF: FPGA: Recv ZPIEZORD 31564
17-03-18 03:53:11.314 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:11.314 -07 000000610 INF: Z Motor: Piezo is near 47.4 V (nominally 0 to 100 V), expect near 56.8 V, since DAC is at 5.676 V. Piezo Error = -9.3 V.
17-03-18 03:53:11.314 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.3 um, Read 10 ADC samples: Avg = 35798 (-169.4 uncal um), Error = 0.9 uncal um, Median = 35797 (-169.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35795 (-169.4 uncal um), Max = 35805 (-169.5 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 03:53:11.314 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35798, posNoise = 7, negNoise = 3
17-03-18 03:53:11.314 -07 000000610 INF: Z Motor: After move to -0.170282, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:53:11.314 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-18 03:53:11.314 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:53:11.314 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:53:11.314 -07 000000611 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:53:11.314 -07 000000474 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:53:11.314 -07 000000012 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 03:53:11.314 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:53:11.314 -07 000000591 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 03:53:11.314 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 03:53:11.314 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 03:53:11.314 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 03:53:11.324 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 03:53:11.324 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 03:53:11.324 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 03:53:11.324 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 03:53:11.324 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 03:53:11.324 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 03:53:11.334 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 03:53:11.334 -07 000000012 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 03:53:11.344 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 03:53:11.344 -07 000000591 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 03:53:11.344 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 412 412 198 198 37375 150\n [Camera]
17-03-18 03:53:11.544 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 03:53:11.614 -07 000000618 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 03:53:11.614 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 117. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1690, R2=1759, Total=3449. Warn if over 250 bubbles per interval.
17-03-18 03:53:11.954 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 604
17-03-18 03:53:11.954 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 604
17-03-18 03:53:11.954 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:53:11.954 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:53:11.954 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 03:53:11.954 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 604
17-03-18 03:53:11.954 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 604
17-03-18 03:53:11.954 -07 000000611 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:53:11.954 -07 000000611 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:53:11.954 -07 000000611 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-18 03:53:12.144 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37375 797
17-03-18 03:53:12.294 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP turning grn on 947
17-03-18 03:53:12.354 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 395 ms.
17-03-18 03:53:12.354 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 03:53:12.354 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:53:12.354 -07 000000611 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 393 ms.
17-03-18 03:53:12.354 -07 000000611 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-18 03:53:12.354 -07 000000611 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:53:12.354 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 03:53:12.354 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 03:53:12.354 -07 000000611 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 03:53:12.364 -07 000000611 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 405 ms.
17-03-18 03:53:12.494 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1145
17-03-18 03:53:12.494 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1145
17-03-18 03:53:12.494 -07 000000611 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:53:12.494 -07 000000611 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:53:12.494 -07 000000611 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-18 03:53:12.494 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1145
17-03-18 03:53:12.494 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1145
17-03-18 03:53:12.494 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:53:12.494 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:53:12.494 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-18 03:53:12.684 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP 1337
17-03-18 03:53:12.684 -07 000000590 INF: FPGA: Recv CAMDBLSNAP
17-03-18 03:53:12.684 -07 000000610 INF: FPGA: 'CAMDBLSNAP 412 412 198 198 37375 150' command took 2 ms to send, 1337 ms to get response, and 1344 ms overall
17-03-18 03:53:12.684 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 03:53:12.684 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 6 at Y-position 63.22314453125, Z-Position -0.170297298261894. ------
17-03-18 03:53:12.694 -07 000000480 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 03:53:12.694 -07 000000625 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.0626 mm, moving Z to -0.17676 mm
17-03-18 03:53:12.694 -07 000000625 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 03:53:12.694 -07 000000608 INF: Y Motor: Entering MoveAbsStepped (target = 102500 steps, sync = True, waitForSettling = True)
17-03-18 03:53:12.694 -07 000000608 INF: Y Motor: Moving to 64.0626 mm, started at 63.2231 mm, delta = 0.8395 mm
17-03-18 03:53:12.694 -07 000000012 INF: Z Motor: Entering MoveAbsStepped (DAC = 38613, sync = True, waitForSettling = False)
17-03-18 03:53:12.694 -07 000000012 INF: Z Motor: Moving to -0.176759 mm, started at -0.170297 mm, distance = -6.46 um
17-03-18 03:53:12.694 -07 000000474 INF: FPGA: Recv FOCMRRCUR 
17-03-18 03:53:12.704 -07 000000480 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 03:53:12.704 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:53:12.704 -07 000000447 INF: FPGA: Recv YRDPOS 129481
17-03-18 03:53:12.714 -07 000000480 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 03:53:12.714 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-18 03:53:12.714 -07 000000608 INF: Y Motor: Encoder = 129481 = motor step 101157.0 = 63.2231 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:53:12.714 -07 000000608 INF: Y Motor: Last commanded position = 63.2326 mm (101172.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 03:53:12.714 -07 000000608 INF: Y Motor: Moving 1343 steps-20
17-03-18 03:53:12.724 -07 000000012 INF: FPGA: Xmit ZDACW 38613\n [Z Motor]
17-03-18 03:53:12.724 -07 000000618 INF: FPGA: Recv ZDACW
17-03-18 03:53:12.734 -07 000000608 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 03:53:12.734 -07 000000012 INF: FPGA: 'ZDACW 38613' command took 0 ms to send, 0 ms to get response, and 31 ms overall
17-03-18 03:53:12.744 -07 000000012 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:53:12.744 -07 000000447 INF: FPGA: Recv ZDACR 38613
17-03-18 03:53:12.754 -07 000000012 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 03:53:12.754 -07 000000012 INF: Z Motor: MoveAbsStepped took 51 ms (did NOT wait for settling yet))
17-03-18 03:53:12.884 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 388 ms.
17-03-18 03:53:12.884 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-18 03:53:12.884 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:53:12.884 -07 000000611 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 393 ms.
17-03-18 03:53:12.884 -07 000000611 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-18 03:53:12.884 -07 000000611 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:53:12.894 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:53:12.894 -07 000000611 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 03:53:12.894 -07 000000611 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 03:53:12.894 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 03:53:12.914 -07 000000611 INF: FPGA: Recv FOCMRRFOC
17-03-18 03:53:12.914 -07 000000480 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 212 ms overall
17-03-18 03:53:13.104 -07 000000618 INF: FPGA: Recv YMVTILE
17-03-18 03:53:13.104 -07 000000608 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 03:53:13.154 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:53:13.154 -07 000000474 INF: FPGA: Recv YRDPOS 131186
17-03-18 03:53:13.164 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 03:53:13.164 -07 000000608 INF: Y Motor: Encoder = 131186 = motor step 102489.1 = 64.0557 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:53:13.164 -07 000000608 INF: Y Motor: Position error before settling (table move) = -14 encoder counts (-0.007 mm)
17-03-18 03:53:13.164 -07 000000608 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.839 mm, average velocity = 2.115 mm/sec
17-03-18 03:53:14.114 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:53:14.114 -07 000000590 INF: FPGA: Recv YRDPOS 131186
17-03-18 03:53:14.124 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:53:14.124 -07 000000608 INF: Y Motor: Encoder = 131186 = motor step 102489.1 = 64.0557 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:53:14.144 -07 000000608 INF: Y Motor: After move to 64.062607, error = -0.006943, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 03:53:14.144 -07 000000608 INF: Y Motor: Position error after settling (table move) = -14 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 03:53:14.154 -07 000000608 INF: Y Motor: Moved to 64.0557 after 1451 ms (table move)
17-03-18 03:53:14.154 -07 000000625 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176759 mm (DAC = 38613)
17-03-18 03:53:14.154 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:53:14.154 -07 000000474 INF: FPGA: Recv ZSGSRD 36811
17-03-18 03:53:14.164 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 03:53:14.164 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:53:14.164 -07 000000474 INF: FPGA: Recv ZSGSRD 36801
17-03-18 03:53:14.174 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:14.174 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:53:14.174 -07 000000474 INF: FPGA: Recv ZSGSRD 36803
17-03-18 03:53:14.184 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:14.184 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:53:14.184 -07 000000474 INF: FPGA: Recv ZSGSRD 36811
17-03-18 03:53:14.194 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:14.194 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:53:14.194 -07 000000474 INF: FPGA: Recv ZSGSRD 36782
17-03-18 03:53:14.204 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:14.204 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:53:14.204 -07 000000480 INF: FPGA: Recv ZSGSRD 36801
17-03-18 03:53:14.214 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:14.214 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:53:14.214 -07 000000480 INF: FPGA: Recv ZSGSRD 36798
17-03-18 03:53:14.224 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:14.224 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:53:14.224 -07 000000501 INF: FPGA: Recv ZSGSRD 36811
17-03-18 03:53:14.234 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:14.234 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:53:14.234 -07 000000474 INF: FPGA: Recv ZSGSRD 36802
17-03-18 03:53:14.244 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:14.244 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:53:14.244 -07 000000474 INF: FPGA: Recv ZSGSRD 36806
17-03-18 03:53:14.254 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:14.254 -07 000000625 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:53:14.254 -07 000000501 INF: FPGA: Recv ZPIEZORD 32899
17-03-18 03:53:14.264 -07 000000625 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:14.264 -07 000000625 INF: Z Motor: Piezo is near 50.3 V (nominally 0 to 100 V), expect near 58.9 V, since DAC is at 5.892 V. Piezo Error = -8.6 V.
17-03-18 03:53:14.264 -07 000000625 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.8 um, Read 10 ADC samples: Avg = 36803 (-175.9 uncal um), Error = 0.9 uncal um, Median = 36802 (-175.9 uncal um), StdDev = 9 (0.1 uncal um), Range = 29 (0.2 uncal um), Min = 36782 (-175.7 uncal um), Max = 36811 (-175.9 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 21 (0.1 uncal um)
17-03-18 03:53:14.264 -07 000000625 INF: Z Motor: ADC noise = 21, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36803, posNoise = 8, negNoise = 21
17-03-18 03:53:14.264 -07 000000625 INF: Z Motor: After move to -0.176759, error = 0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:53:14.264 -07 000000625 INF: Z Motor: Settle wait time = 1456 ms, measure time = 106 ms (allowed 150 ms), total time = 1562 ms
17-03-18 03:53:14.264 -07 000000625 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-18 03:53:14.314 -07 000000625 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1614 ms
17-03-18 03:53:14.314 -07 000000625 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 03:53:14.314 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:53:14.314 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:53:14.314 -07 000000480 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:53:14.314 -07 000000590 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 03:53:14.314 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:53:14.314 -07 000000591 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:53:14.314 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 03:53:14.314 -07 000000590 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 03:53:14.324 -07 000000590 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 03:53:14.324 -07 000000590 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 03:53:14.334 -07 000000590 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 8 ms.
17-03-18 03:53:14.334 -07 000000590 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-18 03:53:14.334 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 03:53:14.384 -07 000000618 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 03:53:14.684 -07 000000608 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 03:53:14.684 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 03:53:14.684 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 03:53:14.684 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2673282832, 0x0, 559484976) start.
17-03-18 03:53:14.724 -07 000000474 INF: FPGA: Recv @CAMSNAP 380
17-03-18 03:53:14.724 -07 000000447 INF: FPGA: Recv CAMSNAP
17-03-18 03:53:14.724 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 380 ms to get response, and 384 ms overall
17-03-18 03:53:14.794 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2673282832, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 03:53:14.794 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:53:14.794 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 03:53:14.794 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 03:53:14.824 -07 000000012 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 03:53:14.824 -07 000000480 INF: Autofocus start
17-03-18 03:53:14.824 -07 000000480 INF: MeasureProfile start
17-03-18 03:53:14.824 -07 000000447 INF: FPGA: Recv FOCMRRCUR 
17-03-18 03:53:14.834 -07 000000012 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 03:53:14.834 -07 000000012 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 03:53:14.834 -07 000000480 INF: MeasureProfile done
17-03-18 03:53:14.834 -07 000000480 INF: X=-64  Z correction [um]=-0.4038377
17-03-18 03:53:14.834 -07 000000480 INF: Autofocus finished
17-03-18 03:53:15.034 -07 000000625 INF: FPGA: Recv FOCMRRIMG
17-03-18 03:53:15.034 -07 000000012 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 03:53:15.034 -07 000000610 INF: ------------ Scan Snapping tile 6 at Y-position 64.0556640625, Z-position -0.176753631464363. ----------
17-03-18 03:53:15.034 -07 000000610 INF: Cycle	118	Tile	6	Exposure Settings		A	412	G	198	T	198	C	412
17-03-18 03:53:15.044 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37037, sync = True, waitForSettling = True)
17-03-18 03:53:15.044 -07 000000610 INF: Z Motor: Moving to -0.169545 mm, started at -0.176754 mm, distance = 7.21 um
17-03-18 03:53:15.044 -07 000000610 INF: FPGA: Xmit ZDACW 37037\n [Z Motor]
17-03-18 03:53:15.044 -07 000000608 INF: FPGA: Recv ZDACW
17-03-18 03:53:15.054 -07 000000610 INF: FPGA: 'ZDACW 37037' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 03:53:15.054 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:53:15.054 -07 000000611 INF: FPGA: Recv ZDACR 37037
17-03-18 03:53:15.064 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:15.064 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 03:53:15.214 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:53:15.214 -07 000000608 INF: FPGA: Recv ZSGSRD 35681
17-03-18 03:53:15.224 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:15.224 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:53:15.224 -07 000000625 INF: FPGA: Recv ZSGSRD 35680
17-03-18 03:53:15.234 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:15.234 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:53:15.234 -07 000000608 INF: FPGA: Recv ZSGSRD 35683
17-03-18 03:53:15.244 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:15.244 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:53:15.244 -07 000000625 INF: FPGA: Recv ZSGSRD 35680
17-03-18 03:53:15.254 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:15.254 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:53:15.254 -07 000000012 INF: FPGA: Recv ZSGSRD 35677
17-03-18 03:53:15.264 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:15.264 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:53:15.264 -07 000000501 INF: FPGA: Recv ZSGSRD 35683
17-03-18 03:53:15.274 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:15.274 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:53:15.274 -07 000000625 INF: FPGA: Recv ZSGSRD 35683
17-03-18 03:53:15.284 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:15.284 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:53:15.284 -07 000000501 INF: FPGA: Recv ZSGSRD 35690
17-03-18 03:53:15.294 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:15.294 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:53:15.294 -07 000000625 INF: FPGA: Recv ZSGSRD 35680
17-03-18 03:53:15.304 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:53:15.304 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:53:15.304 -07 000000625 INF: FPGA: Recv ZSGSRD 35676
17-03-18 03:53:15.314 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:15.314 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:53:15.314 -07 000000012 INF: FPGA: Recv ZPIEZORD 31379
17-03-18 03:53:15.324 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:15.324 -07 000000610 INF: Z Motor: Piezo is near 47.0 V (nominally 0 to 100 V), expect near 56.5 V, since DAC is at 5.651 V. Piezo Error = -9.5 V.
17-03-18 03:53:15.324 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.5 um, Read 10 ADC samples: Avg = 35681 (-168.7 uncal um), Error = 0.9 uncal um, Median = 35680 (-168.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 35676 (-168.6 uncal um), Max = 35690 (-168.7 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 03:53:15.324 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35681, posNoise = 9, negNoise = 5
17-03-18 03:53:15.324 -07 000000610 INF: Z Motor: After move to -0.169545, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:53:15.324 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 03:53:15.324 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:53:15.324 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:53:15.324 -07 000000012 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:53:15.324 -07 000000625 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:53:15.324 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 03:53:15.324 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:53:15.324 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 03:53:15.324 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 03:53:15.324 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 03:53:15.324 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 03:53:15.324 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 03:53:15.324 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 03:53:15.334 -07 000000608 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 118, FrontChillerTemperature: 4.028963,
17-03-18 03:53:15.334 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 03:53:15.334 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 03:53:15.334 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 03:53:15.334 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 03:53:15.344 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 11 ms.
17-03-18 03:53:15.344 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 03:53:15.344 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 11 ms.
17-03-18 03:53:15.344 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 03:53:15.354 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 412 412 198 198 37214 150\n [Camera]
17-03-18 03:53:15.544 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 03:53:15.964 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 604
17-03-18 03:53:15.964 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 604
17-03-18 03:53:15.964 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:53:15.964 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:53:15.964 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) start.
17-03-18 03:53:15.964 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 604
17-03-18 03:53:15.964 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 604
17-03-18 03:53:15.964 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:53:15.964 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:53:15.964 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2486767776, 0x0, 418435064) start.
17-03-18 03:53:16.154 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37214 797
17-03-18 03:53:16.304 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning grn on 950
17-03-18 03:53:16.354 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) end. Duration was 395 ms.
17-03-18 03:53:16.354 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 03:53:16.354 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:53:16.364 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2486767776, 0x0, 418435064) end. Duration was 394 ms.
17-03-18 03:53:16.364 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-18 03:53:16.364 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:53:16.364 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:53:16.364 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 03:53:16.364 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:53:16.374 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-18 03:53:16.504 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1145
17-03-18 03:53:16.504 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1145
17-03-18 03:53:16.504 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:53:16.504 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:53:16.504 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2684358704, 0x0, 391868352) start.
17-03-18 03:53:16.504 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1145
17-03-18 03:53:16.504 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1145
17-03-18 03:53:16.504 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:53:16.504 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:53:16.504 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 2719780968, 0x0, 418435064) start.
17-03-18 03:53:16.614 -07 000000480 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 03:53:16.614 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 117. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1690, R2=1759, Total=3449. Warn if over 250 bubbles per interval.
17-03-18 03:53:16.694 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP 1338
17-03-18 03:53:16.694 -07 000000501 INF: FPGA: Recv CAMDBLSNAP
17-03-18 03:53:16.694 -07 000000610 INF: FPGA: 'CAMDBLSNAP 412 412 198 198 37214 150' command took 2 ms to send, 1335 ms to get response, and 1350 ms overall
17-03-18 03:53:16.694 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 03:53:16.694 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 7 at Y-position 64.0556640625, Z-Position -0.169545665441308. ------
17-03-18 03:53:16.704 -07 000000611 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 03:53:16.704 -07 000000561 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.8926 mm, moving Z to -0.17593 mm
17-03-18 03:53:16.704 -07 000000561 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 03:53:16.704 -07 000000608 INF: FPGA: Recv FOCMRRCUR 
17-03-18 03:53:16.704 -07 000000501 INF: Y Motor: Entering MoveAbsStepped (target = 103828 steps, sync = True, waitForSettling = True)
17-03-18 03:53:16.704 -07 000000501 INF: Y Motor: Moving to 64.8926 mm, started at 64.0557 mm, delta = 0.8369 mm
17-03-18 03:53:16.704 -07 000000480 INF: Z Motor: Entering MoveAbsStepped (DAC = 38432, sync = True, waitForSettling = False)
17-03-18 03:53:16.704 -07 000000480 INF: Z Motor: Moving to -0.175930 mm, started at -0.169546 mm, distance = -6.38 um
17-03-18 03:53:16.714 -07 000000611 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:16.714 -07 000000480 INF: FPGA: Xmit ZDACW 38432\n [Z Motor]
17-03-18 03:53:16.714 -07 000000608 INF: FPGA: Recv ZDACW
17-03-18 03:53:16.724 -07 000000480 INF: FPGA: 'ZDACW 38432' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-18 03:53:16.724 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:53:16.724 -07 000000591 INF: FPGA: Recv YRDPOS 131186
17-03-18 03:53:16.734 -07 000000611 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 03:53:16.734 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-18 03:53:16.734 -07 000000501 INF: Y Motor: Encoder = 131186 = motor step 102489.1 = 64.0557 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:53:16.734 -07 000000501 INF: Y Motor: Last commanded position = 64.0626 mm (102500.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 03:53:16.734 -07 000000501 INF: Y Motor: Moving 1339 steps-14
17-03-18 03:53:16.744 -07 000000480 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:53:16.744 -07 000000591 INF: FPGA: Recv ZDACR 38432
17-03-18 03:53:16.754 -07 000000501 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 03:53:16.754 -07 000000480 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 03:53:16.754 -07 000000480 INF: Z Motor: MoveAbsStepped took 43 ms (did NOT wait for settling yet))
17-03-18 03:53:16.904 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2684358704, 0x0, 391868352) end. Duration was 400 ms.
17-03-18 03:53:16.904 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 03:53:16.904 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:53:16.904 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 2719780968, 0x0, 418435064) end. Duration was 400 ms.
17-03-18 03:53:16.904 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 03:53:16.904 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:53:16.914 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:53:16.914 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 03:53:16.914 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms.
17-03-18 03:53:16.924 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-18 03:53:16.934 -07 000000591 INF: FPGA: Recv FOCMRRFOC
17-03-18 03:53:16.934 -07 000000611 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 03:53:17.124 -07 000000591 INF: FPGA: Recv YMVTILE
17-03-18 03:53:17.124 -07 000000501 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 03:53:17.174 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:53:17.174 -07 000000611 INF: FPGA: Recv YRDPOS 132869
17-03-18 03:53:17.184 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 03:53:17.184 -07 000000501 INF: Y Motor: Encoder = 132869 = motor step 103803.9 = 64.8774 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:53:17.184 -07 000000501 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-18 03:53:17.184 -07 000000501 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.837 mm, average velocity = 2.108 mm/sec
17-03-18 03:53:18.134 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:53:18.134 -07 000000608 INF: FPGA: Recv YRDPOS 132869
17-03-18 03:53:18.144 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:53:18.144 -07 000000501 INF: Y Motor: Encoder = 132869 = motor step 103803.9 = 64.8774 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:53:18.174 -07 000000501 INF: Y Motor: After move to 64.892609, error = -0.015167, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 03:53:18.174 -07 000000501 INF: Y Motor: Position error after settling (table move) = -31 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 03:53:18.174 -07 000000501 INF: Y Motor: Moved to 64.8774 after 1464 ms (table move)
17-03-18 03:53:18.174 -07 000000561 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175930 mm (DAC = 38432)
17-03-18 03:53:18.174 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:53:18.174 -07 000000462 INF: FPGA: Recv ZSGSRD 36672
17-03-18 03:53:18.184 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 03:53:18.184 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:53:18.184 -07 000000462 INF: FPGA: Recv ZSGSRD 36679
17-03-18 03:53:18.194 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:18.194 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:53:18.194 -07 000000462 INF: FPGA: Recv ZSGSRD 36669
17-03-18 03:53:18.204 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:18.204 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:53:18.204 -07 000000480 INF: FPGA: Recv ZSGSRD 36672
17-03-18 03:53:18.214 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:18.214 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:53:18.214 -07 000000591 INF: FPGA: Recv ZSGSRD 36680
17-03-18 03:53:18.224 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:18.224 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:53:18.224 -07 000000462 INF: FPGA: Recv ZSGSRD 36674
17-03-18 03:53:18.234 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:18.234 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:53:18.234 -07 000000591 INF: FPGA: Recv ZSGSRD 36675
17-03-18 03:53:18.244 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:18.244 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:53:18.244 -07 000000618 INF: FPGA: Recv ZSGSRD 36672
17-03-18 03:53:18.254 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:18.254 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:53:18.254 -07 000000611 INF: FPGA: Recv ZSGSRD 36670
17-03-18 03:53:18.264 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:18.264 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:53:18.264 -07 000000591 INF: FPGA: Recv ZSGSRD 36685
17-03-18 03:53:18.274 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:18.274 -07 000000561 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:53:18.274 -07 000000591 INF: FPGA: Recv ZPIEZORD 32749
17-03-18 03:53:18.284 -07 000000561 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:18.284 -07 000000561 INF: Z Motor: Piezo is near 50.0 V (nominally 0 to 100 V), expect near 58.6 V, since DAC is at 5.864 V. Piezo Error = -8.7 V.
17-03-18 03:53:18.284 -07 000000561 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.9 um, Read 10 ADC samples: Avg = 36675 (-175.0 uncal um), Error = 0.9 uncal um, Median = 36673 (-175.0 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 36669 (-175.0 uncal um), Max = 36685 (-175.1 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 03:53:18.284 -07 000000561 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36675, posNoise = 10, negNoise = 6
17-03-18 03:53:18.284 -07 000000561 INF: Z Motor: After move to -0.175930, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:53:18.284 -07 000000561 INF: Z Motor: Settle wait time = 1468 ms, measure time = 105 ms (allowed 150 ms), total time = 1573 ms
17-03-18 03:53:18.284 -07 000000561 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 03:53:18.334 -07 000000561 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1629 ms
17-03-18 03:53:18.334 -07 000000561 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 03:53:18.334 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:53:18.334 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:53:18.334 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:53:18.334 -07 000000625 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:53:18.334 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 03:53:18.334 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:53:18.334 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 03:53:18.334 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 03:53:18.344 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 03:53:18.344 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 03:53:18.344 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 03:53:18.344 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 03:53:18.354 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 03:53:18.394 -07 000000561 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 03:53:18.694 -07 000000608 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 03:53:18.694 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 03:53:18.694 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 03:53:18.694 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1512312592, 0x0, 559484976) start.
17-03-18 03:53:18.734 -07 000000512 INF: FPGA: Recv @CAMSNAP 380
17-03-18 03:53:18.734 -07 000000611 INF: FPGA: Recv CAMSNAP
17-03-18 03:53:18.734 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 03:53:18.814 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1512312592, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 03:53:18.814 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:53:18.814 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 03:53:18.814 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 03:53:18.834 -07 000000561 INF: Autofocus start
17-03-18 03:53:18.834 -07 000000561 INF: MeasureProfile start
17-03-18 03:53:18.834 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 03:53:18.834 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-18 03:53:18.844 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 03:53:18.844 -07 000000512 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 03:53:18.844 -07 000000561 INF: MeasureProfile done
17-03-18 03:53:18.844 -07 000000561 INF: X=16  Z correction [um]=0.01042744
17-03-18 03:53:18.844 -07 000000561 INF: Autofocus finished
17-03-18 03:53:19.044 -07 000000012 INF: FPGA: Recv FOCMRRIMG
17-03-18 03:53:19.044 -07 000000512 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 03:53:19.044 -07 000000610 INF: ------------ Scan Snapping tile 7 at Y-position 64.87744140625, Z-position -0.175931332310218. ----------
17-03-18 03:53:19.044 -07 000000610 INF: Cycle	118	Tile	7	Exposure Settings		A	412	G	198	T	198	C	412
17-03-18 03:53:19.054 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36946, sync = True, waitForSettling = True)
17-03-18 03:53:19.054 -07 000000610 INF: Z Motor: Moving to -0.169128 mm, started at -0.175931 mm, distance = 6.80 um
17-03-18 03:53:19.054 -07 000000610 INF: FPGA: Xmit ZDACW 36946\n [Z Motor]
17-03-18 03:53:19.054 -07 000000591 INF: FPGA: Recv ZDACW
17-03-18 03:53:19.064 -07 000000610 INF: FPGA: 'ZDACW 36946' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 03:53:19.064 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:53:19.064 -07 000000561 INF: FPGA: Recv ZDACR 36946
17-03-18 03:53:19.074 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:19.074 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 03:53:19.224 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:53:19.224 -07 000000512 INF: FPGA: Recv ZSGSRD 35619
17-03-18 03:53:19.234 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:53:19.234 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:53:19.234 -07 000000561 INF: FPGA: Recv ZSGSRD 35618
17-03-18 03:53:19.244 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:19.244 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:53:19.244 -07 000000625 INF: FPGA: Recv ZSGSRD 35618
17-03-18 03:53:19.254 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:19.254 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:53:19.254 -07 000000561 INF: FPGA: Recv ZSGSRD 35615
17-03-18 03:53:19.264 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:19.264 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:53:19.264 -07 000000591 INF: FPGA: Recv ZSGSRD 35619
17-03-18 03:53:19.274 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:19.274 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:53:19.274 -07 000000625 INF: FPGA: Recv ZSGSRD 35621
17-03-18 03:53:19.284 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:19.284 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:53:19.284 -07 000000561 INF: FPGA: Recv ZSGSRD 35615
17-03-18 03:53:19.294 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:19.294 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:53:19.294 -07 000000608 INF: FPGA: Recv ZSGSRD 35609
17-03-18 03:53:19.304 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:19.304 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:53:19.304 -07 000000625 INF: FPGA: Recv ZSGSRD 35617
17-03-18 03:53:19.314 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:19.314 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:53:19.314 -07 000000561 INF: FPGA: Recv ZSGSRD 35613
17-03-18 03:53:19.324 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:19.324 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:53:19.324 -07 000000512 INF: FPGA: Recv ZPIEZORD 31306
17-03-18 03:53:19.334 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:19.334 -07 000000610 INF: Z Motor: Piezo is near 46.9 V (nominally 0 to 100 V), expect near 56.4 V, since DAC is at 5.638 V. Piezo Error = -9.5 V.
17-03-18 03:53:19.334 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.1 um, Read 10 ADC samples: Avg = 35616 (-168.3 uncal um), Error = 0.9 uncal um, Median = 35618 (-168.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35609 (-168.2 uncal um), Max = 35621 (-168.3 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 03:53:19.334 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35616, posNoise = 5, negNoise = 7
17-03-18 03:53:19.334 -07 000000610 INF: Z Motor: After move to -0.169128, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:53:19.334 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 03:53:19.334 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:53:19.334 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:53:19.334 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:53:19.334 -07 000000625 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:53:19.334 -07 000000608 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 03:53:19.334 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:53:19.334 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 03:53:19.334 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 03:53:19.334 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 03:53:19.334 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 03:53:19.334 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 03:53:19.334 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 03:53:19.344 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 03:53:19.344 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 03:53:19.344 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 03:53:19.344 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 03:53:19.354 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-18 03:53:19.354 -07 000000608 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 03:53:19.354 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-18 03:53:19.354 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 03:53:19.354 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 412 412 198 198 37123 150\n [Camera]
17-03-18 03:53:19.554 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 03:53:19.964 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 604
17-03-18 03:53:19.964 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 604
17-03-18 03:53:19.964 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:53:19.964 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:53:19.964 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 2755203232, 0x0, 391868352) start.
17-03-18 03:53:19.974 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 604
17-03-18 03:53:19.974 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 604
17-03-18 03:53:19.974 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:53:20.114 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:53:20.114 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-18 03:53:20.164 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37123 797
17-03-18 03:53:20.314 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning grn on 947
17-03-18 03:53:20.364 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 2755203232, 0x0, 391868352) end. Duration was 396 ms.
17-03-18 03:53:20.364 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 03:53:20.364 -07 000000625 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:53:20.364 -07 000000625 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:53:20.364 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 03:53:20.484 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 373 ms.
17-03-18 03:53:20.484 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 373 ms.
17-03-18 03:53:20.484 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:53:20.484 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-18 03:53:20.494 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 522 ms.
17-03-18 03:53:20.504 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1145
17-03-18 03:53:20.504 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1145
17-03-18 03:53:20.514 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:53:20.514 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1145
17-03-18 03:53:20.514 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1145
17-03-18 03:53:20.514 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:53:20.514 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:53:20.514 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2334002848, 0x0, 391868352) start.
17-03-18 03:53:20.514 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:53:20.514 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-18 03:53:20.704 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP 1337
17-03-18 03:53:20.704 -07 000000561 INF: FPGA: Recv CAMDBLSNAP
17-03-18 03:53:20.704 -07 000000610 INF: FPGA: 'CAMDBLSNAP 412 412 198 198 37123 150' command took 2 ms to send, 1342 ms to get response, and 1346 ms overall
17-03-18 03:53:20.704 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 03:53:20.704 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 8 at Y-position 64.87744140625, Z-Position -0.169128091652093. ------
17-03-18 03:53:20.704 -07 000000625 INF: Y Motor: MoveYZ optimized starting. Moving Y to 65.7226 mm, moving Z to -0.17583 mm
17-03-18 03:53:20.714 -07 000000625 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 03:53:20.714 -07 000000591 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 03:53:20.714 -07 000000561 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 118, FrontChillerTemperature: 4.018051,
17-03-18 03:53:20.714 -07 000000561 INF: Y Motor: Entering MoveAbsStepped (target = 105156 steps, sync = True, waitForSettling = True)
17-03-18 03:53:20.714 -07 000000561 INF: Y Motor: Moving to 65.7226 mm, started at 64.8774 mm, delta = 0.8452 mm
17-03-18 03:53:20.734 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:53:20.914 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 398 ms.
17-03-18 03:53:20.914 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 03:53:20.914 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:53:20.914 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2334002848, 0x0, 391868352) end. Duration was 400 ms.
17-03-18 03:53:20.914 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 03:53:20.914 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:53:20.924 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 03:53:20.924 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 03:53:20.924 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 413 ms.
17-03-18 03:53:20.934 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 416 ms.
17-03-18 03:53:20.934 -07 000000512 INF: Z Motor: Entering MoveAbsStepped (DAC = 38409, sync = True, waitForSettling = False)
17-03-18 03:53:20.934 -07 000000512 INF: Z Motor: Moving to -0.175825 mm, started at -0.169128 mm, distance = -6.70 um
17-03-18 03:53:20.934 -07 000000512 INF: FPGA: Xmit ZDACW 38409\n [Z Motor]
17-03-18 03:53:20.934 -07 000000608 INF: FPGA: Recv FOCMRRCUR 
17-03-18 03:53:20.934 -07 000000608 INF: FPGA: Recv YRDPOS 132870
17-03-18 03:53:20.934 -07 000000608 INF: FPGA: Recv ZDACW
17-03-18 03:53:20.934 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 199 ms to get response, and 224 ms overall
17-03-18 03:53:20.934 -07 000000561 INF: Y Motor: Encoder = 132870 = motor step 103804.7 = 64.8779 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:53:20.944 -07 000000512 INF: FPGA: 'ZDACW 38409' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 03:53:20.944 -07 000000512 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:53:20.944 -07 000000591 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 219 ms to get response, and 230 ms overall
17-03-18 03:53:20.944 -07 000000608 INF: FPGA: Recv ZDACR 38409
17-03-18 03:53:20.944 -07 000000561 INF: Y Motor: Last commanded position = 64.8926 mm (103828.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 03:53:20.944 -07 000000561 INF: Y Motor: Moving 1351 steps-31
17-03-18 03:53:20.954 -07 000000512 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:20.954 -07 000000512 INF: Z Motor: MoveAbsStepped took 15 ms (did NOT wait for settling yet))
17-03-18 03:53:20.954 -07 000000561 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 03:53:20.974 -07 000000591 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 03:53:21.174 -07 000000618 INF: FPGA: Recv FOCMRRFOC
17-03-18 03:53:21.174 -07 000000591 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 232 ms overall
17-03-18 03:53:21.324 -07 000000480 INF: FPGA: Recv YMVTILE
17-03-18 03:53:21.324 -07 000000561 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 385 ms overall
17-03-18 03:53:21.374 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:53:21.374 -07 000000590 INF: FPGA: Recv YRDPOS 134580
17-03-18 03:53:21.384 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 03:53:21.384 -07 000000561 INF: Y Motor: Encoder = 134580 = motor step 105140.6 = 65.7129 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:53:21.384 -07 000000561 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-18 03:53:21.384 -07 000000561 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 385 ms, distance = 0.845 mm, average velocity = 2.195 mm/sec
17-03-18 03:53:21.614 -07 000000474 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 03:53:21.614 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 117. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1690, R2=1759, Total=3449. Warn if over 250 bubbles per interval.
17-03-18 03:53:22.334 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:53:22.334 -07 000000501 INF: FPGA: Recv YRDPOS 134580
17-03-18 03:53:22.344 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:53:22.344 -07 000000561 INF: Y Motor: Encoder = 134580 = motor step 105140.6 = 65.7129 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:53:22.374 -07 000000561 INF: Y Motor: After move to 65.722610, error = -0.009720, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 03:53:22.374 -07 000000561 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 03:53:22.374 -07 000000561 INF: Y Motor: Moved to 65.7129 after 1662 ms (table move)
17-03-18 03:53:22.384 -07 000000625 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175825 mm (DAC = 38409)
17-03-18 03:53:22.384 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:53:22.384 -07 000000501 INF: FPGA: Recv ZSGSRD 36662
17-03-18 03:53:22.394 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:22.394 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:53:22.394 -07 000000512 INF: FPGA: Recv ZSGSRD 36656
17-03-18 03:53:22.404 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:22.404 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:53:22.404 -07 000000512 INF: FPGA: Recv ZSGSRD 36658
17-03-18 03:53:22.414 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:22.414 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:53:22.414 -07 000000512 INF: FPGA: Recv ZSGSRD 36660
17-03-18 03:53:22.424 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:22.424 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:53:22.424 -07 000000512 INF: FPGA: Recv ZSGSRD 36652
17-03-18 03:53:22.434 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:22.434 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:53:22.434 -07 000000512 INF: FPGA: Recv ZSGSRD 36657
17-03-18 03:53:22.444 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:22.444 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:53:22.444 -07 000000447 INF: FPGA: Recv ZSGSRD 36660
17-03-18 03:53:22.454 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:22.454 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:53:22.454 -07 000000447 INF: FPGA: Recv ZSGSRD 36660
17-03-18 03:53:22.464 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:22.464 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:53:22.464 -07 000000447 INF: FPGA: Recv ZSGSRD 36666
17-03-18 03:53:22.474 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:22.474 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:53:22.474 -07 000000501 INF: FPGA: Recv ZSGSRD 36664
17-03-18 03:53:22.484 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:22.484 -07 000000625 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:53:22.484 -07 000000501 INF: FPGA: Recv ZPIEZORD 32743
17-03-18 03:53:22.494 -07 000000625 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:22.494 -07 000000625 INF: Z Motor: Piezo is near 49.9 V (nominally 0 to 100 V), expect near 58.6 V, since DAC is at 5.861 V. Piezo Error = -8.7 V.
17-03-18 03:53:22.494 -07 000000625 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.8 um, Read 10 ADC samples: Avg = 36660 (-174.9 uncal um), Error = 0.9 uncal um, Median = 36660 (-174.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 36652 (-174.9 uncal um), Max = 36666 (-175.0 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 03:53:22.494 -07 000000625 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36660, posNoise = 6, negNoise = 8
17-03-18 03:53:22.494 -07 000000625 INF: Z Motor: After move to -0.175825, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:53:22.494 -07 000000625 INF: Z Motor: Settle wait time = 1446 ms, measure time = 109 ms (allowed 150 ms), total time = 1555 ms
17-03-18 03:53:22.494 -07 000000625 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-18 03:53:22.544 -07 000000625 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1830 ms
17-03-18 03:53:22.544 -07 000000625 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 03:53:22.544 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:53:22.544 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:53:22.554 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:53:22.554 -07 000000608 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:53:22.554 -07 000000474 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 03:53:22.554 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:53:22.554 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 03:53:22.554 -07 000000474 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 03:53:22.554 -07 000000474 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 03:53:22.554 -07 000000474 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 03:53:22.564 -07 000000474 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 03:53:22.564 -07 000000474 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-18 03:53:22.564 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 03:53:22.614 -07 000000561 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 03:53:22.914 -07 000000591 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 03:53:22.914 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 03:53:22.914 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 03:53:22.914 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2602438304, 0x0, 559484976) start.
17-03-18 03:53:22.954 -07 000000480 INF: FPGA: Recv @CAMSNAP 380
17-03-18 03:53:22.954 -07 000000561 INF: FPGA: Recv CAMSNAP
17-03-18 03:53:22.954 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 381 ms to get response, and 384 ms overall
17-03-18 03:53:23.024 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2602438304, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 03:53:23.024 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:53:23.024 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 03:53:23.024 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 03:53:23.054 -07 000000618 INF: Autofocus start
17-03-18 03:53:23.054 -07 000000618 INF: MeasureProfile start
17-03-18 03:53:23.054 -07 000000608 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 03:53:23.054 -07 000000590 INF: FPGA: Recv FOCMRRCUR 
17-03-18 03:53:23.064 -07 000000608 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 03:53:23.064 -07 000000608 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 03:53:23.064 -07 000000618 INF: MeasureProfile done
17-03-18 03:53:23.064 -07 000000618 INF: X=0  Z correction [um]=-0.0713522
17-03-18 03:53:23.064 -07 000000618 INF: Autofocus finished
17-03-18 03:53:23.264 -07 000000590 INF: FPGA: Recv FOCMRRIMG
17-03-18 03:53:23.264 -07 000000608 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 03:53:23.264 -07 000000610 INF: ------------ Scan Snapping tile 8 at Y-position 65.712890625, Z-position -0.175834969128092. ----------
17-03-18 03:53:23.394 -07 000000610 INF: Cycle	118	Tile	8	Exposure Settings		A	412	G	198	T	198	C	412
17-03-18 03:53:23.394 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36906, sync = True, waitForSettling = True)
17-03-18 03:53:23.394 -07 000000610 INF: Z Motor: Moving to -0.168945 mm, started at -0.175835 mm, distance = 6.89 um
17-03-18 03:53:23.394 -07 000000610 INF: FPGA: Xmit ZDACW 36906\n [Z Motor]
17-03-18 03:53:23.394 -07 000000608 INF: FPGA: Recv ZDACW
17-03-18 03:53:23.404 -07 000000610 INF: FPGA: 'ZDACW 36906' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 03:53:23.404 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:53:23.404 -07 000000512 INF: FPGA: Recv ZDACR 36906
17-03-18 03:53:23.414 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:23.414 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 03:53:23.564 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:53:23.564 -07 000000512 INF: FPGA: Recv ZSGSRD 35593
17-03-18 03:53:23.574 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:53:23.574 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:53:23.574 -07 000000480 INF: FPGA: Recv ZSGSRD 35586
17-03-18 03:53:23.584 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:23.584 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:53:23.584 -07 000000512 INF: FPGA: Recv ZSGSRD 35587
17-03-18 03:53:23.594 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:23.594 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:53:23.594 -07 000000625 INF: FPGA: Recv ZSGSRD 35586
17-03-18 03:53:23.604 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:23.604 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:53:23.604 -07 000000608 INF: FPGA: Recv ZSGSRD 35594
17-03-18 03:53:23.614 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:23.614 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:53:23.614 -07 000000480 INF: FPGA: Recv ZSGSRD 35590
17-03-18 03:53:23.624 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:23.624 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:53:23.624 -07 000000512 INF: FPGA: Recv ZSGSRD 35588
17-03-18 03:53:23.634 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:23.634 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:53:23.634 -07 000000625 INF: FPGA: Recv ZSGSRD 35594
17-03-18 03:53:23.644 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:23.644 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:53:23.644 -07 000000480 INF: FPGA: Recv ZSGSRD 35591
17-03-18 03:53:23.654 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:23.654 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:53:23.654 -07 000000512 INF: FPGA: Recv ZSGSRD 35583
17-03-18 03:53:23.664 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:23.664 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:53:23.664 -07 000000480 INF: FPGA: Recv ZPIEZORD 31330
17-03-18 03:53:23.674 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:23.674 -07 000000610 INF: Z Motor: Piezo is near 46.9 V (nominally 0 to 100 V), expect near 56.3 V, since DAC is at 5.631 V. Piezo Error = -9.4 V.
17-03-18 03:53:23.674 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.9 um, Read 10 ADC samples: Avg = 35589 (-168.1 uncal um), Error = 0.9 uncal um, Median = 35589 (-168.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35583 (-168.0 uncal um), Max = 35594 (-168.1 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 03:53:23.674 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35589, posNoise = 5, negNoise = 6
17-03-18 03:53:23.674 -07 000000610 INF: Z Motor: After move to -0.168945, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:53:23.674 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-18 03:53:23.674 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:53:23.674 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:53:23.674 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:53:23.674 -07 000000447 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:53:23.674 -07 000000590 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 03:53:23.674 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:53:23.674 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 03:53:23.674 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 03:53:23.674 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 03:53:23.674 -07 000000590 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 03:53:23.674 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 03:53:23.674 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 03:53:23.684 -07 000000590 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 03:53:23.684 -07 000000590 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 03:53:23.684 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 03:53:23.684 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 03:53:23.694 -07 000000590 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 03:53:23.694 -07 000000590 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 03:53:23.694 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 03:53:23.694 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 03:53:23.694 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 412 412 198 198 37083 150\n [Camera]
17-03-18 03:53:23.894 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning red on 194
17-03-18 03:53:24.314 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 607
17-03-18 03:53:24.314 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 607
17-03-18 03:53:24.314 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:53:24.314 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 607
17-03-18 03:53:24.314 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 607
17-03-18 03:53:24.314 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:53:24.314 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:53:24.314 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-18 03:53:24.314 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:53:24.314 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 2334002848, 0x0, 418435064) start.
17-03-18 03:53:24.504 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37083 797
17-03-18 03:53:24.644 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP turning grn on 947
17-03-18 03:53:24.714 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 397 ms.
17-03-18 03:53:24.714 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 03:53:24.714 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:53:24.714 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 2334002848, 0x0, 418435064) end. Duration was 395 ms.
17-03-18 03:53:24.714 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 03:53:24.714 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:53:24.714 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 03:53:24.714 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-18 03:53:24.724 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 03:53:24.724 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-18 03:53:24.844 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1145
17-03-18 03:53:24.844 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1145
17-03-18 03:53:24.844 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:53:24.854 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1145
17-03-18 03:53:24.854 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1145
17-03-18 03:53:24.854 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:53:24.854 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:53:24.854 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) start.
17-03-18 03:53:24.854 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:53:24.854 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 2617114384, 0x0, 418435064) start.
17-03-18 03:53:25.034 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP 1337
17-03-18 03:53:25.044 -07 000000447 INF: FPGA: Recv CAMDBLSNAP
17-03-18 03:53:25.044 -07 000000610 INF: FPGA: 'CAMDBLSNAP 412 412 198 198 37083 150' command took 2 ms to send, 1340 ms to get response, and 1344 ms overall
17-03-18 03:53:25.044 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 03:53:25.044 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 9 at Y-position 65.712890625, Z-Position -0.168954637924266. ------
17-03-18 03:53:25.044 -07 000000447 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 03:53:25.244 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 2617114384, 0x0, 418435064) end. Duration was 387 ms.
17-03-18 03:53:25.244 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-18 03:53:25.244 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:53:25.244 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) end. Duration was 390 ms.
17-03-18 03:53:25.244 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-18 03:53:25.244 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:53:25.254 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 03:53:25.254 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:53:25.254 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 03:53:25.254 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 405 ms.
17-03-18 03:53:25.264 -07 000000590 INF: Y Motor: MoveYZ optimized starting. Moving Y to 66.5526 mm, moving Z to -0.17543 mm
17-03-18 03:53:25.264 -07 000000590 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 03:53:25.264 -07 000000561 INF: FPGA: Recv FOCMRRCUR 
17-03-18 03:53:25.264 -07 000000447 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 216 ms to get response, and 221 ms overall
17-03-18 03:53:25.264 -07 000000447 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 03:53:25.264 -07 000000561 INF: Y Motor: Entering MoveAbsStepped (target = 106484 steps, sync = True, waitForSettling = True)
17-03-18 03:53:25.264 -07 000000561 INF: Y Motor: Moving to 66.5526 mm, started at 65.7129 mm, delta = 0.8397 mm
17-03-18 03:53:25.274 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:53:26.034 -07 000000611 INF: Z Motor: Entering MoveAbsStepped (DAC = 38323, sync = True, waitForSettling = False)
17-03-18 03:53:26.034 -07 000000611 INF: Z Motor: Moving to -0.175431 mm, started at -0.168955 mm, distance = -6.48 um
17-03-18 03:53:26.034 -07 000000611 INF: FPGA: Xmit ZDACW 38323\n [Z Motor]
17-03-18 03:53:26.564 -07 000000012 INF: FPGA: Recv YRDPOS 134580
17-03-18 03:53:26.564 -07 000000012 INF: FPGA: Recv FOCMRRFOC
17-03-18 03:53:26.564 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1280 ms to get response, and 1291 ms overall
17-03-18 03:53:26.564 -07 000000012 INF: FPGA: Recv ZDACW
17-03-18 03:53:26.564 -07 000000611 INF: FPGA: 'ZDACW 38323' command took 0 ms to send, 520 ms to get response, and 529 ms overall
17-03-18 03:53:26.564 -07 000000561 INF: Y Motor: Encoder = 134580 = motor step 105140.6 = 65.7129 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:53:26.564 -07 000000561 INF: Y Motor: Last commanded position = 65.7226 mm (105156.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 03:53:26.564 -07 000000561 INF: Y Motor: Moving 1344 steps-20
17-03-18 03:53:26.564 -07 000000447 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 1290 ms to get response, and 1293 ms overall
17-03-18 03:53:26.564 -07 000000611 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:53:26.564 -07 000000012 INF: FPGA: Recv ZDACR 38323
17-03-18 03:53:26.574 -07 000000611 INF: FPGA: 'ZDACR' command took 1 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 03:53:26.574 -07 000000611 INF: Z Motor: MoveAbsStepped took 538 ms (did NOT wait for settling yet))
17-03-18 03:53:26.574 -07 000000561 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 03:53:26.614 -07 000000447 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 03:53:26.614 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 117. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1690, R2=1759, Total=3449. Warn if over 250 bubbles per interval.
17-03-18 03:53:26.944 -07 000000611 INF: FPGA: Recv YMVTILE
17-03-18 03:53:26.944 -07 000000561 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 386 ms overall
17-03-18 03:53:26.994 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:53:27.004 -07 000000611 INF: FPGA: Recv YRDPOS 136269
17-03-18 03:53:27.004 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 03:53:27.004 -07 000000561 INF: Y Motor: Encoder = 136269 = motor step 106460.2 = 66.5376 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:53:27.004 -07 000000561 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-18 03:53:27.004 -07 000000561 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 387 ms, distance = 0.840 mm, average velocity = 2.170 mm/sec
17-03-18 03:53:27.184 -07 000000502 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 118, FrontChillerTemperature: 4.011254,
17-03-18 03:53:27.954 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:53:27.954 -07 000000625 INF: FPGA: Recv YRDPOS 136270
17-03-18 03:53:27.964 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:27.964 -07 000000561 INF: Y Motor: Encoder = 136270 = motor step 106460.9 = 66.5381 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:53:27.994 -07 000000561 INF: Y Motor: After move to 66.552605, error = -0.014519, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 03:53:27.994 -07 000000561 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 03:53:27.994 -07 000000561 INF: Y Motor: Moved to 66.5381 after 2724 ms (table move)
17-03-18 03:53:27.994 -07 000000590 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175431 mm (DAC = 38323)
17-03-18 03:53:27.994 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:53:27.994 -07 000000608 INF: FPGA: Recv ZSGSRD 36599
17-03-18 03:53:28.004 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 03:53:28.004 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:53:28.004 -07 000000502 INF: FPGA: Recv ZSGSRD 36607
17-03-18 03:53:28.014 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:28.014 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:53:28.014 -07 000000447 INF: FPGA: Recv ZSGSRD 36605
17-03-18 03:53:28.024 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:28.024 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:53:28.024 -07 000000611 INF: FPGA: Recv ZSGSRD 36596
17-03-18 03:53:28.034 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:28.034 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:53:28.034 -07 000000502 INF: FPGA: Recv ZSGSRD 36599
17-03-18 03:53:28.044 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:28.044 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:53:28.044 -07 000000012 INF: FPGA: Recv ZSGSRD 36605
17-03-18 03:53:28.054 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:28.054 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:53:28.054 -07 000000611 INF: FPGA: Recv ZSGSRD 36596
17-03-18 03:53:28.064 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:28.064 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:53:28.064 -07 000000608 INF: FPGA: Recv ZSGSRD 36599
17-03-18 03:53:28.074 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:28.074 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:53:28.074 -07 000000625 INF: FPGA: Recv ZSGSRD 36595
17-03-18 03:53:28.084 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:28.084 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:53:28.084 -07 000000447 INF: FPGA: Recv ZSGSRD 36609
17-03-18 03:53:28.094 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:28.094 -07 000000590 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:53:28.094 -07 000000012 INF: FPGA: Recv ZPIEZORD 32686
17-03-18 03:53:28.104 -07 000000590 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:28.104 -07 000000590 INF: Z Motor: Piezo is near 49.8 V (nominally 0 to 100 V), expect near 58.5 V, since DAC is at 5.848 V. Piezo Error = -8.7 V.
17-03-18 03:53:28.104 -07 000000590 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.4 um, Read 10 ADC samples: Avg = 36601 (-174.6 uncal um), Error = 0.9 uncal um, Median = 36599 (-174.6 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 36595 (-174.5 uncal um), Max = 36609 (-174.6 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 03:53:28.104 -07 000000590 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36601, posNoise = 8, negNoise = 6
17-03-18 03:53:28.104 -07 000000590 INF: Z Motor: After move to -0.175431, error = -0.000024, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:53:28.104 -07 000000590 INF: Z Motor: Settle wait time = 1964 ms, measure time = 104 ms (allowed 150 ms), total time = 2068 ms
17-03-18 03:53:28.104 -07 000000590 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-18 03:53:28.154 -07 000000590 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2887 ms
17-03-18 03:53:28.154 -07 000000590 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 03:53:28.154 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:53:28.154 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:53:28.154 -07 000000590 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:53:28.154 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:53:28.154 -07 000000625 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 03:53:28.154 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:53:28.154 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 03:53:28.154 -07 000000625 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 03:53:28.164 -07 000000625 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 03:53:28.164 -07 000000625 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 03:53:28.174 -07 000000625 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-18 03:53:28.174 -07 000000625 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 14 ms.
17-03-18 03:53:28.174 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 03:53:28.214 -07 000000502 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 03:53:28.514 -07 000000590 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 03:53:28.514 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 03:53:28.524 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 03:53:28.624 -07 000000502 INF: FPGA: Recv @CAMSNAP 380
17-03-18 03:53:28.624 -07 000000502 INF: FPGA: Recv CAMSNAP
17-03-18 03:53:28.624 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2602438304, 0x0, 559484976) start.
17-03-18 03:53:28.624 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 448 ms to get response, and 454 ms overall
17-03-18 03:53:28.754 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2602438304, 0x0, 559484976) end. Duration was 126 ms.
17-03-18 03:53:28.754 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:53:28.754 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 03:53:28.754 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 236 ms.
17-03-18 03:53:28.824 -07 000000561 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 03:53:28.824 -07 000000480 INF: Autofocus start
17-03-18 03:53:28.824 -07 000000480 INF: MeasureProfile start
17-03-18 03:53:28.824 -07 000000447 INF: FPGA: Recv FOCMRRCUR 
17-03-18 03:53:28.834 -07 000000561 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 03:53:28.834 -07 000000561 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 03:53:28.834 -07 000000480 INF: MeasureProfile done
17-03-18 03:53:28.834 -07 000000480 INF: X=0  Z correction [um]=-0.0713522
17-03-18 03:53:28.834 -07 000000480 INF: Autofocus finished
17-03-18 03:53:29.034 -07 000000012 INF: FPGA: Recv FOCMRRIMG
17-03-18 03:53:29.034 -07 000000561 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 03:53:29.034 -07 000000610 INF: ------------ Scan Snapping tile 9 at Y-position 66.5380859375, Z-position -0.175455940611728. ----------
17-03-18 03:53:29.034 -07 000000610 INF: Cycle	118	Tile	9	Exposure Settings		A	412	G	198	T	198	C	412
17-03-18 03:53:29.044 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36820, sync = True, waitForSettling = True)
17-03-18 03:53:29.044 -07 000000610 INF: Z Motor: Moving to -0.168551 mm, started at -0.175456 mm, distance = 6.90 um
17-03-18 03:53:29.044 -07 000000610 INF: FPGA: Xmit ZDACW 36820\n [Z Motor]
17-03-18 03:53:29.044 -07 000000512 INF: FPGA: Recv ZDACW
17-03-18 03:53:29.054 -07 000000610 INF: FPGA: 'ZDACW 36820' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 03:53:29.054 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:53:29.054 -07 000000625 INF: FPGA: Recv ZDACR 36820
17-03-18 03:53:29.064 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:29.064 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 03:53:29.214 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:53:29.214 -07 000000512 INF: FPGA: Recv ZSGSRD 35530
17-03-18 03:53:29.224 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:53:29.224 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:53:29.224 -07 000000512 INF: FPGA: Recv ZSGSRD 35529
17-03-18 03:53:29.234 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:29.234 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:53:29.234 -07 000000512 INF: FPGA: Recv ZSGSRD 35531
17-03-18 03:53:29.244 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:29.244 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:53:29.244 -07 000000480 INF: FPGA: Recv ZSGSRD 35528
17-03-18 03:53:29.254 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:29.254 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:53:29.254 -07 000000512 INF: FPGA: Recv ZSGSRD 35528
17-03-18 03:53:29.264 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:29.264 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:53:29.264 -07 000000512 INF: FPGA: Recv ZSGSRD 35531
17-03-18 03:53:29.274 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:29.274 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:53:29.274 -07 000000512 INF: FPGA: Recv ZSGSRD 35528
17-03-18 03:53:29.284 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:29.284 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:53:29.284 -07 000000512 INF: FPGA: Recv ZSGSRD 35527
17-03-18 03:53:29.294 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:29.294 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:53:29.294 -07 000000611 INF: FPGA: Recv ZSGSRD 35529
17-03-18 03:53:29.304 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:29.304 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:53:29.304 -07 000000512 INF: FPGA: Recv ZSGSRD 35530
17-03-18 03:53:29.314 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:29.314 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:53:29.314 -07 000000611 INF: FPGA: Recv ZPIEZORD 31259
17-03-18 03:53:29.324 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:29.324 -07 000000610 INF: Z Motor: Piezo is near 46.8 V (nominally 0 to 100 V), expect near 56.2 V, since DAC is at 5.618 V. Piezo Error = -9.4 V.
17-03-18 03:53:29.324 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.6 um, Read 10 ADC samples: Avg = 35529 (-167.7 uncal um), Error = 0.9 uncal um, Median = 35529 (-167.7 uncal um), StdDev = 1 (0.0 uncal um), Range = 4 (0.0 uncal um), Min = 35527 (-167.7 uncal um), Max = 35531 (-167.7 uncal um), Pos Noise = 2 (0.0 uncal um), Neg Noise = 2 (0.0 uncal um)
17-03-18 03:53:29.324 -07 000000610 INF: Z Motor: ADC noise = 2, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35529, posNoise = 2, negNoise = 2
17-03-18 03:53:29.324 -07 000000610 INF: Z Motor: After move to -0.168551, error = -0.000018, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:53:29.324 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-18 03:53:29.324 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:53:29.324 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:53:29.324 -07 000000625 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:53:29.324 -07 000000611 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:53:29.324 -07 000000447 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 03:53:29.324 -07 000000608 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 03:53:29.324 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 03:53:29.324 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:53:29.324 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 03:53:29.324 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 03:53:29.324 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 03:53:29.324 -07 000000447 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 03:53:29.334 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 03:53:29.334 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 03:53:29.334 -07 000000447 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 03:53:29.334 -07 000000447 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 03:53:29.344 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-18 03:53:29.344 -07 000000608 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 03:53:29.344 -07 000000447 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 03:53:29.344 -07 000000447 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 03:53:29.354 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 412 412 198 198 36997 150\n [Camera]
17-03-18 03:53:29.554 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 03:53:29.964 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 604
17-03-18 03:53:29.964 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 604
17-03-18 03:53:29.964 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:53:29.964 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 604
17-03-18 03:53:29.964 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 604
17-03-18 03:53:29.964 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:53:29.964 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:53:29.964 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-18 03:53:29.974 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:53:29.974 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2334002848, 0x0, 418435064) start.
17-03-18 03:53:30.154 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36997 797
17-03-18 03:53:30.304 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP turning grn on 947
17-03-18 03:53:30.354 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2334002848, 0x0, 418435064) end. Duration was 382 ms.
17-03-18 03:53:30.354 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-18 03:53:30.354 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:53:30.354 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:53:30.354 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 390 ms.
17-03-18 03:53:30.354 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-18 03:53:30.354 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:53:30.364 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:53:30.364 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 03:53:30.364 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-18 03:53:30.504 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1145
17-03-18 03:53:30.504 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1145
17-03-18 03:53:30.504 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:53:30.504 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1145
17-03-18 03:53:30.504 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1145
17-03-18 03:53:30.504 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:53:30.514 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:53:30.514 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) start.
17-03-18 03:53:30.514 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:53:30.514 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 2612709080, 0x0, 418435064) start.
17-03-18 03:53:30.694 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP 1338
17-03-18 03:53:30.694 -07 000000625 INF: FPGA: Recv CAMDBLSNAP
17-03-18 03:53:30.694 -07 000000610 INF: FPGA: 'CAMDBLSNAP 412 412 198 198 36997 150' command took 2 ms to send, 1337 ms to get response, and 1347 ms overall
17-03-18 03:53:30.694 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 03:53:30.694 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 10 at Y-position 66.5380859375, Z-Position -0.16856918519576. ------
17-03-18 03:53:30.704 -07 000000512 INF: Y Motor: MoveYZ optimized starting. Moving Y to 67.3826 mm, moving Z to -0.17539 mm
17-03-18 03:53:30.704 -07 000000512 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 03:53:30.704 -07 000000625 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 03:53:30.914 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 2612709080, 0x0, 418435064) end. Duration was 402 ms.
17-03-18 03:53:30.914 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-18 03:53:30.914 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:53:30.914 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) end. Duration was 402 ms.
17-03-18 03:53:30.914 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 03:53:30.914 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:53:30.924 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 03:53:30.924 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 03:53:30.924 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 416 ms.
17-03-18 03:53:30.924 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 419 ms.
17-03-18 03:53:30.934 -07 000000480 INF: Y Motor: Entering MoveAbsStepped (target = 107812 steps, sync = True, waitForSettling = True)
17-03-18 03:53:30.934 -07 000000480 INF: Y Motor: Moving to 67.3826 mm, started at 66.5381 mm, delta = 0.8445 mm
17-03-18 03:53:30.934 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:53:30.934 -07 000000590 INF: FPGA: Recv FOCMRRCUR 
17-03-18 03:53:30.934 -07 000000590 INF: FPGA: Recv YRDPOS 136270
17-03-18 03:53:30.934 -07 000000625 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 226 ms to get response, and 231 ms overall
17-03-18 03:53:30.934 -07 000000590 INF: Z Motor: Entering MoveAbsStepped (DAC = 38315, sync = True, waitForSettling = False)
17-03-18 03:53:30.934 -07 000000590 INF: Z Motor: Moving to -0.175395 mm, started at -0.168569 mm, distance = -6.83 um
17-03-18 03:53:30.944 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 03:53:30.944 -07 000000480 INF: Y Motor: Encoder = 136270 = motor step 106460.9 = 66.5381 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:53:30.944 -07 000000480 INF: Y Motor: Last commanded position = 66.5526 mm (106484.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 03:53:30.944 -07 000000480 INF: Y Motor: Moving 1351 steps-31
17-03-18 03:53:30.944 -07 000000590 INF: FPGA: Xmit ZDACW 38315\n [Z Motor]
17-03-18 03:53:30.954 -07 000000625 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 03:53:30.964 -07 000000480 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 03:53:31.824 -07 000000462 INF: FPGA: Recv ZDACW
17-03-18 03:53:31.824 -07 000000462 INF: FPGA: Recv FOCMRRFOC
17-03-18 03:53:31.824 -07 000000462 INF: FPGA: Recv YMVTILE
17-03-18 03:53:31.824 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 03:53:31.824 -07 000000480 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 850 ms to get response, and 880 ms overall
17-03-18 03:53:31.824 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 117. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1690, R2=1759, Total=3449. Warn if over 250 bubbles per interval.
17-03-18 03:53:31.824 -07 000000590 INF: FPGA: 'ZDACW 38315' command took 0 ms to send, 870 ms to get response, and 882 ms overall
17-03-18 03:53:31.824 -07 000000625 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 860 ms to get response, and 884 ms overall
17-03-18 03:53:31.824 -07 000000590 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:53:31.824 -07 000000462 INF: FPGA: Recv ZDACR 38315
17-03-18 03:53:31.834 -07 000000590 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 03:53:31.834 -07 000000590 INF: Z Motor: MoveAbsStepped took 892 ms (did NOT wait for settling yet))
17-03-18 03:53:31.874 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:53:31.874 -07 000000462 INF: FPGA: Recv YRDPOS 137975
17-03-18 03:53:31.884 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 03:53:31.884 -07 000000480 INF: Y Motor: Encoder = 137975 = motor step 107793.0 = 67.3706 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:53:31.884 -07 000000480 INF: Y Motor: Position error before settling (table move) = -25 encoder counts (-0.012 mm)
17-03-18 03:53:31.884 -07 000000480 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 880 ms, distance = 0.845 mm, average velocity = 0.960 mm/sec
17-03-18 03:53:32.564 -07 000000618 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 118, FrontChillerTemperature: 4.023489,
17-03-18 03:53:32.834 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:53:32.834 -07 000000618 INF: FPGA: Recv YRDPOS 137975
17-03-18 03:53:32.844 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:53:32.844 -07 000000480 INF: Y Motor: Encoder = 137975 = motor step 107793.0 = 67.3706 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:53:32.874 -07 000000480 INF: Y Motor: After move to 67.382607, error = -0.012001, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 03:53:32.874 -07 000000480 INF: Y Motor: Position error after settling (table move) = -25 encoder counts (-0.012 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 03:53:32.874 -07 000000480 INF: Y Motor: Moved to 67.3706 after 1938 ms (table move)
17-03-18 03:53:32.874 -07 000000512 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175395 mm (DAC = 38315)
17-03-18 03:53:32.874 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:53:32.874 -07 000000502 INF: FPGA: Recv ZSGSRD 36590
17-03-18 03:53:32.884 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 03:53:32.884 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:53:32.884 -07 000000462 INF: FPGA: Recv ZSGSRD 36596
17-03-18 03:53:32.894 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:32.894 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:53:32.894 -07 000000480 INF: FPGA: Recv ZSGSRD 36595
17-03-18 03:53:32.904 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:32.904 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:53:32.904 -07 000000501 INF: FPGA: Recv ZSGSRD 36589
17-03-18 03:53:32.914 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:32.914 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:53:32.914 -07 000000462 INF: FPGA: Recv ZSGSRD 36591
17-03-18 03:53:32.924 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:32.924 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:53:32.924 -07 000000502 INF: FPGA: Recv ZSGSRD 36591
17-03-18 03:53:32.934 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:32.934 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:53:32.934 -07 000000462 INF: FPGA: Recv ZSGSRD 36598
17-03-18 03:53:32.944 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:32.944 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:53:32.944 -07 000000501 INF: FPGA: Recv ZSGSRD 36595
17-03-18 03:53:32.954 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:32.954 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:53:32.954 -07 000000480 INF: FPGA: Recv ZSGSRD 36591
17-03-18 03:53:32.964 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:32.964 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:53:32.964 -07 000000502 INF: FPGA: Recv ZSGSRD 36595
17-03-18 03:53:32.974 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:32.974 -07 000000512 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:53:32.974 -07 000000462 INF: FPGA: Recv ZPIEZORD 32691
17-03-18 03:53:32.984 -07 000000512 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:32.984 -07 000000512 INF: Z Motor: Piezo is near 49.8 V (nominally 0 to 100 V), expect near 58.5 V, since DAC is at 5.846 V. Piezo Error = -8.6 V.
17-03-18 03:53:32.984 -07 000000512 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.4 um, Read 10 ADC samples: Avg = 36593 (-174.5 uncal um), Error = 0.9 uncal um, Median = 36593 (-174.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 36589 (-174.5 uncal um), Max = 36598 (-174.5 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 03:53:32.984 -07 000000512 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36593, posNoise = 5, negNoise = 4
17-03-18 03:53:32.984 -07 000000512 INF: Z Motor: After move to -0.175395, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:53:32.984 -07 000000512 INF: Z Motor: Settle wait time = 1936 ms, measure time = 107 ms (allowed 150 ms), total time = 2043 ms
17-03-18 03:53:32.984 -07 000000512 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-18 03:53:33.034 -07 000000512 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2324 ms
17-03-18 03:53:33.034 -07 000000512 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 03:53:33.034 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:53:33.034 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:53:33.034 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:53:33.034 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:53:33.034 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 03:53:33.044 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:53:33.044 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 03:53:33.044 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 03:53:33.044 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 03:53:33.044 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 03:53:33.054 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 03:53:33.054 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 03:53:33.054 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 03:53:33.104 -07 000000474 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 03:53:33.394 -07 000000608 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 03:53:33.394 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 03:53:33.404 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 03:53:33.404 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 583729424, 0x0, 559484976) start.
17-03-18 03:53:33.434 -07 000000012 INF: FPGA: Recv @CAMSNAP 380
17-03-18 03:53:33.444 -07 000000462 INF: FPGA: Recv CAMSNAP
17-03-18 03:53:33.444 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 380 ms to get response, and 384 ms overall
17-03-18 03:53:33.524 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 583729424, 0x0, 559484976) end. Duration was 125 ms.
17-03-18 03:53:33.524 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:53:33.524 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 03:53:33.524 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms.
17-03-18 03:53:33.544 -07 000000561 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 03:53:33.544 -07 000000512 INF: Autofocus start
17-03-18 03:53:33.544 -07 000000512 INF: MeasureProfile start
17-03-18 03:53:33.544 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-18 03:53:33.554 -07 000000561 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 03:53:33.554 -07 000000561 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 03:53:33.554 -07 000000512 INF: MeasureProfile done
17-03-18 03:53:33.554 -07 000000512 INF: X=32  Z correction [um]=0.09220707
17-03-18 03:53:33.554 -07 000000512 INF: Autofocus finished
17-03-18 03:53:33.754 -07 000000012 INF: FPGA: Recv FOCMRRIMG
17-03-18 03:53:33.754 -07 000000561 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 03:53:33.754 -07 000000610 INF: ------------ Scan Snapping tile 10 at Y-position 67.37060546875, Z-position -0.175404546914594. ----------
17-03-18 03:53:33.754 -07 000000610 INF: Cycle	118	Tile	10	Exposure Settings		A	412	G	198	T	198	C	412
17-03-18 03:53:33.764 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36847, sync = True, waitForSettling = True)
17-03-18 03:53:33.764 -07 000000610 INF: Z Motor: Moving to -0.168675 mm, started at -0.175405 mm, distance = 6.73 um
17-03-18 03:53:33.764 -07 000000610 INF: FPGA: Xmit ZDACW 36847\n [Z Motor]
17-03-18 03:53:33.764 -07 000000591 INF: FPGA: Recv ZDACW
17-03-18 03:53:33.774 -07 000000610 INF: FPGA: 'ZDACW 36847' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:33.774 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:53:33.774 -07 000000502 INF: FPGA: Recv ZDACR 36847
17-03-18 03:53:33.784 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:33.784 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 03:53:33.934 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:53:33.934 -07 000000480 INF: FPGA: Recv ZSGSRD 35549
17-03-18 03:53:33.944 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:53:33.944 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:53:33.944 -07 000000591 INF: FPGA: Recv ZSGSRD 35546
17-03-18 03:53:33.954 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:33.954 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:53:33.954 -07 000000502 INF: FPGA: Recv ZSGSRD 35550
17-03-18 03:53:33.964 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:33.964 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:53:33.964 -07 000000591 INF: FPGA: Recv ZSGSRD 35546
17-03-18 03:53:33.974 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:33.974 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:53:33.974 -07 000000625 INF: FPGA: Recv ZSGSRD 35548
17-03-18 03:53:33.984 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:33.984 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:53:33.984 -07 000000502 INF: FPGA: Recv ZSGSRD 35548
17-03-18 03:53:33.994 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:33.994 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:53:33.994 -07 000000618 INF: FPGA: Recv ZSGSRD 35547
17-03-18 03:53:34.004 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:34.004 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:53:34.004 -07 000000625 INF: FPGA: Recv ZSGSRD 35553
17-03-18 03:53:34.014 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:34.014 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:53:34.014 -07 000000618 INF: FPGA: Recv ZSGSRD 35545
17-03-18 03:53:34.024 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:34.024 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:53:34.024 -07 000000625 INF: FPGA: Recv ZSGSRD 35543
17-03-18 03:53:34.034 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:34.034 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:53:34.034 -07 000000618 INF: FPGA: Recv ZPIEZORD 31255
17-03-18 03:53:34.044 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:34.044 -07 000000610 INF: Z Motor: Piezo is near 46.8 V (nominally 0 to 100 V), expect near 56.2 V, since DAC is at 5.622 V. Piezo Error = -9.5 V.
17-03-18 03:53:34.044 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.7 um, Read 10 ADC samples: Avg = 35548 (-167.8 uncal um), Error = 0.9 uncal um, Median = 35548 (-167.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35543 (-167.8 uncal um), Max = 35553 (-167.9 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 03:53:34.044 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35548, posNoise = 5, negNoise = 5
17-03-18 03:53:34.044 -07 000000610 INF: Z Motor: After move to -0.168675, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:53:34.044 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 03:53:34.044 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:53:34.044 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:53:34.044 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:53:34.044 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:53:34.044 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 03:53:34.044 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 03:53:34.044 -07 000000611 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 03:53:34.044 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:53:34.044 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 03:53:34.044 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 03:53:34.044 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 03:53:34.044 -07 000000611 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 03:53:34.054 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 03:53:34.054 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 03:53:34.054 -07 000000611 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 03:53:34.054 -07 000000611 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 03:53:34.064 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-18 03:53:34.064 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 03:53:34.064 -07 000000611 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 03:53:34.064 -07 000000611 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 03:53:34.074 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 412 412 198 198 37024 150\n [Camera]
17-03-18 03:53:34.274 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 03:53:34.684 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 604
17-03-18 03:53:34.684 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 604
17-03-18 03:53:34.684 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:53:34.684 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:53:34.684 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 03:53:34.684 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 604
17-03-18 03:53:34.684 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 604
17-03-18 03:53:34.684 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:53:34.684 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:53:34.684 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 2162365984, 0x0, 418435064) start.
17-03-18 03:53:34.874 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37024 797
17-03-18 03:53:35.024 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning grn on 947
17-03-18 03:53:35.084 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 397 ms.
17-03-18 03:53:35.084 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 03:53:35.084 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:53:35.084 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 2162365984, 0x0, 418435064) end. Duration was 397 ms.
17-03-18 03:53:35.084 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:53:35.084 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 03:53:35.084 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 03:53:35.084 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:53:35.084 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:53:35.094 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 408 ms.
17-03-18 03:53:35.224 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1145
17-03-18 03:53:35.224 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1145
17-03-18 03:53:35.224 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:53:35.334 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1145
17-03-18 03:53:35.334 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1145
17-03-18 03:53:35.334 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:53:35.344 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:53:35.344 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-18 03:53:35.344 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:53:35.344 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2334002848, 0x0, 418435064) start.
17-03-18 03:53:35.414 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP 1338
17-03-18 03:53:35.414 -07 000000561 INF: FPGA: Recv CAMDBLSNAP
17-03-18 03:53:35.414 -07 000000610 INF: FPGA: 'CAMDBLSNAP 412 412 198 198 37024 150' command took 2 ms to send, 1335 ms to get response, and 1345 ms overall
17-03-18 03:53:35.414 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 03:53:35.414 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 11 at Y-position 67.37060546875, Z-Position -0.168691245226453. ------
17-03-18 03:53:35.424 -07 000000561 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 03:53:35.744 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 401 ms.
17-03-18 03:53:35.744 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 03:53:35.744 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:53:35.744 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2334002848, 0x0, 418435064) end. Duration was 401 ms.
17-03-18 03:53:35.744 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-18 03:53:35.744 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:53:35.754 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 03:53:35.754 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 526 ms.
17-03-18 03:53:35.754 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 03:53:35.754 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 420 ms.
17-03-18 03:53:35.764 -07 000000502 INF: Y Motor: MoveYZ optimized starting. Moving Y to 68.2126 mm, moving Z to -0.17498 mm
17-03-18 03:53:35.764 -07 000000502 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 03:53:35.764 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-18 03:53:35.764 -07 000000561 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 338 ms to get response, and 346 ms overall
17-03-18 03:53:35.764 -07 000000561 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 03:53:35.774 -07 000000618 INF: Y Motor: Entering MoveAbsStepped (target = 109140 steps, sync = True, waitForSettling = True)
17-03-18 03:53:35.774 -07 000000618 INF: Y Motor: Moving to 68.2126 mm, started at 67.3706 mm, delta = 0.8420 mm
17-03-18 03:53:35.784 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:53:36.324 -07 000000447 INF: Z Motor: Entering MoveAbsStepped (DAC = 38224, sync = True, waitForSettling = False)
17-03-18 03:53:36.324 -07 000000447 INF: Z Motor: Moving to -0.174978 mm, started at -0.168691 mm, distance = -6.29 um
17-03-18 03:53:36.324 -07 000000447 INF: FPGA: Xmit ZDACW 38224\n [Z Motor]
17-03-18 03:53:36.824 -07 000000590 INF: FPGA: Recv YRDPOS 137975
17-03-18 03:53:36.824 -07 000000590 INF: FPGA: Recv FOCMRRFOC
17-03-18 03:53:36.824 -07 000000590 INF: FPGA: Recv ZDACW
17-03-18 03:53:36.824 -07 000000590 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 03:53:36.824 -07 000000561 INF: FPGA: 'FOCMRRFOC' command took 2 ms to send, 1040 ms to get response, and 1051 ms overall
17-03-18 03:53:36.824 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1030 ms to get response, and 1048 ms overall
17-03-18 03:53:36.824 -07 000000447 INF: FPGA: 'ZDACW 38224' command took 0 ms to send, 490 ms to get response, and 498 ms overall
17-03-18 03:53:36.824 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 117. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1690, R2=1759, Total=3449. Warn if over 250 bubbles per interval.
17-03-18 03:53:36.824 -07 000000618 INF: Y Motor: Encoder = 137975 = motor step 107793.0 = 67.3706 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:53:36.824 -07 000000618 INF: Y Motor: Last commanded position = 67.3826 mm (107812.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 03:53:36.824 -07 000000618 INF: Y Motor: Moving 1347 steps-25
17-03-18 03:53:36.824 -07 000000447 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:53:36.824 -07 000000590 INF: FPGA: Recv ZDACR 38224
17-03-18 03:53:36.834 -07 000000447 INF: FPGA: 'ZDACR' command took 1 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 03:53:36.834 -07 000000618 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 03:53:36.834 -07 000000447 INF: Z Motor: MoveAbsStepped took 508 ms (did NOT wait for settling yet))
17-03-18 03:53:37.214 -07 000000561 INF: FPGA: Recv YMVTILE
17-03-18 03:53:37.214 -07 000000618 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 372 ms to get response, and 390 ms overall
17-03-18 03:53:37.264 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:53:37.264 -07 000000561 INF: FPGA: Recv YRDPOS 139681
17-03-18 03:53:37.274 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 03:53:37.274 -07 000000618 INF: Y Motor: Encoder = 139681 = motor step 109125.8 = 68.2036 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:53:37.274 -07 000000618 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-18 03:53:37.274 -07 000000618 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 390 ms, distance = 0.842 mm, average velocity = 2.159 mm/sec
17-03-18 03:53:37.924 -07 000000012 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 118, FrontChillerTemperature: 4.027603,
17-03-18 03:53:38.224 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:53:38.224 -07 000000625 INF: FPGA: Recv YRDPOS 139681
17-03-18 03:53:38.234 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:53:38.234 -07 000000618 INF: Y Motor: Encoder = 139681 = motor step 109125.8 = 68.2036 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:53:38.264 -07 000000618 INF: Y Motor: After move to 68.212608, error = -0.008995, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 03:53:38.264 -07 000000618 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 03:53:38.264 -07 000000618 INF: Y Motor: Moved to 68.2036 after 2490 ms (table move)
17-03-18 03:53:38.264 -07 000000502 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174978 mm (DAC = 38224)
17-03-18 03:53:38.264 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:53:38.264 -07 000000590 INF: FPGA: Recv ZSGSRD 36532
17-03-18 03:53:38.274 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 03:53:38.274 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:53:38.274 -07 000000462 INF: FPGA: Recv ZSGSRD 36524
17-03-18 03:53:38.284 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:38.284 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:53:38.284 -07 000000561 INF: FPGA: Recv ZSGSRD 36524
17-03-18 03:53:38.294 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:38.294 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:53:38.294 -07 000000447 INF: FPGA: Recv ZSGSRD 36524
17-03-18 03:53:38.304 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:38.304 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:53:38.304 -07 000000012 INF: FPGA: Recv ZSGSRD 36524
17-03-18 03:53:38.314 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:38.314 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:53:38.314 -07 000000474 INF: FPGA: Recv ZSGSRD 36528
17-03-18 03:53:38.324 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:38.324 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:53:38.324 -07 000000561 INF: FPGA: Recv ZSGSRD 36526
17-03-18 03:53:38.334 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:38.334 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:53:38.334 -07 000000447 INF: FPGA: Recv ZSGSRD 36529
17-03-18 03:53:38.344 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:38.344 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:53:38.344 -07 000000590 INF: FPGA: Recv ZSGSRD 36530
17-03-18 03:53:38.354 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:38.354 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:53:38.354 -07 000000611 INF: FPGA: Recv ZSGSRD 36533
17-03-18 03:53:38.364 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:38.364 -07 000000502 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:53:38.364 -07 000000625 INF: FPGA: Recv ZPIEZORD 32603
17-03-18 03:53:38.374 -07 000000502 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:38.374 -07 000000502 INF: Z Motor: Piezo is near 49.6 V (nominally 0 to 100 V), expect near 58.3 V, since DAC is at 5.833 V. Piezo Error = -8.7 V.
17-03-18 03:53:38.374 -07 000000502 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.0 um, Read 10 ADC samples: Avg = 36527 (-174.1 uncal um), Error = 0.9 uncal um, Median = 36527 (-174.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 36524 (-174.1 uncal um), Max = 36533 (-174.1 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 03:53:38.374 -07 000000502 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36527, posNoise = 6, negNoise = 3
17-03-18 03:53:38.374 -07 000000502 INF: Z Motor: After move to -0.174978, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:53:38.374 -07 000000502 INF: Z Motor: Settle wait time = 1944 ms, measure time = 105 ms (allowed 150 ms), total time = 2049 ms
17-03-18 03:53:38.374 -07 000000502 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 03:53:38.424 -07 000000502 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2658 ms
17-03-18 03:53:38.424 -07 000000502 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 03:53:38.424 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:53:38.424 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:53:38.424 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:53:38.424 -07 000000012 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 03:53:38.424 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:53:38.424 -07 000000474 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:53:38.424 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 03:53:38.424 -07 000000012 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 03:53:38.434 -07 000000012 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 03:53:38.434 -07 000000012 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 03:53:38.444 -07 000000012 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-18 03:53:38.444 -07 000000012 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-18 03:53:38.444 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 03:53:38.484 -07 000000591 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 03:53:38.784 -07 000000462 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 03:53:38.784 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 03:53:38.784 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 03:53:38.794 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 03:53:38.824 -07 000000618 INF: FPGA: Recv @CAMSNAP 380
17-03-18 03:53:38.824 -07 000000625 INF: FPGA: Recv CAMSNAP
17-03-18 03:53:38.824 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 379 ms to get response, and 384 ms overall
17-03-18 03:53:38.914 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 126 ms.
17-03-18 03:53:38.914 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:53:38.914 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 03:53:38.914 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-18 03:53:39.024 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 03:53:39.024 -07 000000480 INF: Autofocus start
17-03-18 03:53:39.024 -07 000000480 INF: MeasureProfile start
17-03-18 03:53:39.024 -07 000000611 INF: FPGA: Recv FOCMRRCUR 
17-03-18 03:53:39.034 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 03:53:39.034 -07 000000512 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 03:53:39.034 -07 000000480 INF: MeasureProfile done
17-03-18 03:53:39.034 -07 000000480 INF: X=16  Z correction [um]=0.01042744
17-03-18 03:53:39.034 -07 000000480 INF: Autofocus finished
17-03-18 03:53:39.234 -07 000000591 INF: FPGA: Recv FOCMRRIMG
17-03-18 03:53:39.234 -07 000000512 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 03:53:39.234 -07 000000610 INF: ------------ Scan Snapping tile 11 at Y-position 68.20361328125, Z-position -0.174980548913237. ----------
17-03-18 03:53:39.234 -07 000000610 INF: Cycle	118	Tile	11	Exposure Settings		A	412	G	198	T	198	C	412
17-03-18 03:53:39.244 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36739, sync = True, waitForSettling = True)
17-03-18 03:53:39.244 -07 000000610 INF: Z Motor: Moving to -0.168180 mm, started at -0.174981 mm, distance = 6.80 um
17-03-18 03:53:39.244 -07 000000610 INF: FPGA: Xmit ZDACW 36739\n [Z Motor]
17-03-18 03:53:39.244 -07 000000611 INF: FPGA: Recv ZDACW
17-03-18 03:53:39.254 -07 000000610 INF: FPGA: 'ZDACW 36739' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 03:53:39.254 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:53:39.254 -07 000000561 INF: FPGA: Recv ZDACR 36739
17-03-18 03:53:39.264 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:39.264 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 03:53:39.414 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:53:39.414 -07 000000608 INF: FPGA: Recv ZSGSRD 35472
17-03-18 03:53:39.424 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:53:39.424 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:53:39.424 -07 000000447 INF: FPGA: Recv ZSGSRD 35470
17-03-18 03:53:39.434 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:39.434 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:53:39.434 -07 000000625 INF: FPGA: Recv ZSGSRD 35467
17-03-18 03:53:39.444 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:39.444 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:53:39.444 -07 000000611 INF: FPGA: Recv ZSGSRD 35468
17-03-18 03:53:39.454 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:39.454 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:53:39.454 -07 000000608 INF: FPGA: Recv ZSGSRD 35472
17-03-18 03:53:39.464 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:39.464 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:53:39.464 -07 000000447 INF: FPGA: Recv ZSGSRD 35470
17-03-18 03:53:39.474 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:39.474 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:53:39.474 -07 000000561 INF: FPGA: Recv ZSGSRD 35469
17-03-18 03:53:39.484 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:39.484 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:53:39.484 -07 000000012 INF: FPGA: Recv ZSGSRD 35477
17-03-18 03:53:39.494 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:39.494 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:53:39.494 -07 000000611 INF: FPGA: Recv ZSGSRD 35464
17-03-18 03:53:39.504 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:39.504 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:53:39.504 -07 000000501 INF: FPGA: Recv ZSGSRD 35469
17-03-18 03:53:39.514 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:39.514 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:53:39.514 -07 000000474 INF: FPGA: Recv ZPIEZORD 31207
17-03-18 03:53:39.524 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:39.524 -07 000000610 INF: Z Motor: Piezo is near 46.7 V (nominally 0 to 100 V), expect near 56.1 V, since DAC is at 5.606 V. Piezo Error = -9.4 V.
17-03-18 03:53:39.524 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.2 um, Read 10 ADC samples: Avg = 35470 (-167.3 uncal um), Error = 0.9 uncal um, Median = 35470 (-167.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 35464 (-167.3 uncal um), Max = 35477 (-167.4 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 03:53:39.524 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35470, posNoise = 7, negNoise = 6
17-03-18 03:53:39.524 -07 000000610 INF: Z Motor: After move to -0.168180, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:53:39.524 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 03:53:39.524 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:53:39.524 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:53:39.524 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 03:53:39.524 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:53:39.524 -07 000000447 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 03:53:39.524 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 03:53:39.524 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:53:39.524 -07 000000591 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:53:39.524 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 03:53:39.524 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 03:53:39.524 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 03:53:39.524 -07 000000447 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 03:53:39.534 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 03:53:39.534 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 03:53:39.534 -07 000000447 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-18 03:53:39.534 -07 000000447 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 03:53:39.544 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 14 ms.
17-03-18 03:53:39.544 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 19 ms.
17-03-18 03:53:39.544 -07 000000447 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms.
17-03-18 03:53:39.544 -07 000000447 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 03:53:39.544 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 412 412 198 198 36915 150\n [Camera]
17-03-18 03:53:39.744 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 03:53:40.164 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 604
17-03-18 03:53:40.164 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 604
17-03-18 03:53:40.164 -07 000000611 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:53:40.164 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 604
17-03-18 03:53:40.164 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 604
17-03-18 03:53:40.164 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:53:40.274 -07 000000611 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:53:40.274 -07 000000611 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) start.
17-03-18 03:53:40.274 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:53:40.274 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-18 03:53:40.354 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36915 797
17-03-18 03:53:40.504 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning grn on 947
17-03-18 03:53:40.674 -07 000000611 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) end. Duration was 397 ms.
17-03-18 03:53:40.674 -07 000000611 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 03:53:40.674 -07 000000611 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:53:40.674 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 396 ms.
17-03-18 03:53:40.674 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-18 03:53:40.674 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:53:40.674 -07 000000611 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:53:40.674 -07 000000611 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 512 ms.
17-03-18 03:53:40.674 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:53:40.684 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 519 ms.
17-03-18 03:53:40.704 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1146
17-03-18 03:53:40.704 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1146
17-03-18 03:53:40.704 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:53:40.704 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1146
17-03-18 03:53:40.704 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1146
17-03-18 03:53:40.704 -07 000000474 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:53:40.714 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:53:40.714 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 2334002848, 0x0, 391868352) start.
17-03-18 03:53:40.714 -07 000000474 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:53:40.714 -07 000000474 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) start.
17-03-18 03:53:40.894 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP 1337
17-03-18 03:53:40.894 -07 000000012 INF: FPGA: Recv CAMDBLSNAP
17-03-18 03:53:40.894 -07 000000610 INF: FPGA: 'CAMDBLSNAP 412 412 198 198 36915 150' command took 2 ms to send, 1333 ms to get response, and 1344 ms overall
17-03-18 03:53:40.894 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 03:53:40.894 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 12 at Y-position 68.20361328125, Z-Position -0.168190156679396. ------
17-03-18 03:53:40.894 -07 000000012 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 03:53:41.104 -07 000000474 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) end. Duration was 392 ms.
17-03-18 03:53:41.104 -07 000000474 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-18 03:53:41.104 -07 000000474 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:53:41.104 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 2334002848, 0x0, 391868352) end. Duration was 395 ms.
17-03-18 03:53:41.104 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 03:53:41.104 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:53:41.114 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 03:53:41.114 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 03:53:41.114 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 408 ms.
17-03-18 03:53:41.114 -07 000000474 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-18 03:53:41.124 -07 000000480 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.0426 mm, moving Z to -0.17484 mm
17-03-18 03:53:41.124 -07 000000480 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 03:53:41.124 -07 000000474 INF: FPGA: Recv FOCMRRCUR 
17-03-18 03:53:41.124 -07 000000012 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 228 ms to get response, and 230 ms overall
17-03-18 03:53:41.124 -07 000000012 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 03:53:41.134 -07 000000474 INF: Y Motor: Entering MoveAbsStepped (target = 110468 steps, sync = True, waitForSettling = True)
17-03-18 03:53:41.134 -07 000000474 INF: Y Motor: Moving to 69.0426 mm, started at 68.2036 mm, delta = 0.8390 mm
17-03-18 03:53:41.134 -07 000000474 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:53:41.824 -07 000000447 INF: Z Motor: Entering MoveAbsStepped (DAC = 38193, sync = True, waitForSettling = False)
17-03-18 03:53:41.824 -07 000000447 INF: Z Motor: Moving to -0.174836 mm, started at -0.168190 mm, distance = -6.65 um
17-03-18 03:53:41.824 -07 000000447 INF: FPGA: Xmit ZDACW 38193\n [Z Motor]
17-03-18 03:53:42.824 -07 000000591 INF: FPGA: Recv YRDPOS 139682
17-03-18 03:53:42.824 -07 000000591 INF: FPGA: Recv FOCMRRFOC
17-03-18 03:53:42.824 -07 000000591 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 03:53:42.824 -07 000000012 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 1690 ms to get response, and 1691 ms overall
17-03-18 03:53:42.824 -07 000000591 INF: FPGA: Recv ZDACW
17-03-18 03:53:42.824 -07 000000447 INF: FPGA: 'ZDACW 38193' command took 0 ms to send, 991 ms to get response, and 999 ms overall
17-03-18 03:53:42.824 -07 000000447 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:53:42.824 -07 000000474 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1680 ms to get response, and 1690 ms overall
17-03-18 03:53:42.824 -07 000000474 INF: Y Motor: Encoder = 139682 = motor step 109126.6 = 68.2041 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:53:42.824 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 117. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1690, R2=1759, Total=3449. Warn if over 250 bubbles per interval.
17-03-18 03:53:42.824 -07 000000591 INF: FPGA: Recv ZDACR 38193
17-03-18 03:53:42.824 -07 000000474 INF: Y Motor: Last commanded position = 68.2126 mm (109140.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 03:53:42.824 -07 000000474 INF: Y Motor: Moving 1342 steps-18
17-03-18 03:53:42.834 -07 000000447 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 03:53:42.834 -07 000000447 INF: Z Motor: MoveAbsStepped took 1008 ms (did NOT wait for settling yet))
17-03-18 03:53:42.834 -07 000000474 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 03:53:43.204 -07 000000447 INF: FPGA: Recv YMVTILE
17-03-18 03:53:43.204 -07 000000474 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 369 ms to get response, and 379 ms overall
17-03-18 03:53:43.254 -07 000000474 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:53:43.264 -07 000000012 INF: FPGA: Recv YRDPOS 141365
17-03-18 03:53:43.264 -07 000000474 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 03:53:43.264 -07 000000474 INF: Y Motor: Encoder = 141365 = motor step 110441.4 = 69.0259 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:53:43.264 -07 000000474 INF: Y Motor: Position error before settling (table move) = -34 encoder counts (-0.017 mm)
17-03-18 03:53:43.264 -07 000000474 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 379 ms, distance = 0.839 mm, average velocity = 2.214 mm/sec
17-03-18 03:53:43.444 -07 000000012 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 118, FrontChillerTemperature: 3.993549,
17-03-18 03:53:44.214 -07 000000474 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:53:44.214 -07 000000447 INF: FPGA: Recv YRDPOS 141365
17-03-18 03:53:44.224 -07 000000474 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:44.224 -07 000000474 INF: Y Motor: Encoder = 141365 = motor step 110441.4 = 69.0259 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:53:44.244 -07 000000474 INF: Y Motor: After move to 69.042610, error = -0.016731, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 03:53:44.244 -07 000000474 INF: Y Motor: Position error after settling (table move) = -34 encoder counts (-0.017 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 03:53:44.244 -07 000000474 INF: Y Motor: Moved to 69.0259 after 3119 ms (table move)
17-03-18 03:53:44.254 -07 000000480 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174836 mm (DAC = 38193)
17-03-18 03:53:44.254 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:53:44.254 -07 000000447 INF: FPGA: Recv ZSGSRD 36504
17-03-18 03:53:44.264 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 03:53:44.264 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:53:44.264 -07 000000474 INF: FPGA: Recv ZSGSRD 36510
17-03-18 03:53:44.274 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:44.274 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:53:44.274 -07 000000590 INF: FPGA: Recv ZSGSRD 36504
17-03-18 03:53:44.284 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:44.284 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:53:44.284 -07 000000447 INF: FPGA: Recv ZSGSRD 36507
17-03-18 03:53:44.294 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:44.294 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:53:44.294 -07 000000590 INF: FPGA: Recv ZSGSRD 36503
17-03-18 03:53:44.304 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:44.304 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:53:44.304 -07 000000501 INF: FPGA: Recv ZSGSRD 36502
17-03-18 03:53:44.314 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:44.314 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:53:44.314 -07 000000012 INF: FPGA: Recv ZSGSRD 36504
17-03-18 03:53:44.324 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:44.324 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:53:44.324 -07 000000591 INF: FPGA: Recv ZSGSRD 36505
17-03-18 03:53:44.334 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:44.334 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:53:44.334 -07 000000012 INF: FPGA: Recv ZSGSRD 36511
17-03-18 03:53:44.344 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:44.344 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:53:44.344 -07 000000501 INF: FPGA: Recv ZSGSRD 36508
17-03-18 03:53:44.354 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:44.354 -07 000000480 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:53:44.354 -07 000000591 INF: FPGA: Recv ZPIEZORD 32615
17-03-18 03:53:44.364 -07 000000480 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:44.364 -07 000000480 INF: Z Motor: Piezo is near 49.7 V (nominally 0 to 100 V), expect near 58.3 V, since DAC is at 5.828 V. Piezo Error = -8.6 V.
17-03-18 03:53:44.364 -07 000000480 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.8 um, Read 10 ADC samples: Avg = 36506 (-174.0 uncal um), Error = 0.9 uncal um, Median = 36504 (-173.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 36502 (-173.9 uncal um), Max = 36511 (-174.0 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 03:53:44.364 -07 000000480 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36506, posNoise = 5, negNoise = 4
17-03-18 03:53:44.364 -07 000000480 INF: Z Motor: After move to -0.174836, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:53:44.364 -07 000000480 INF: Z Motor: Settle wait time = 2431 ms, measure time = 108 ms (allowed 150 ms), total time = 2539 ms
17-03-18 03:53:44.364 -07 000000480 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-18 03:53:44.414 -07 000000480 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 3285 ms
17-03-18 03:53:44.414 -07 000000480 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 03:53:44.414 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:53:44.414 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:53:44.414 -07 000000590 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:53:44.414 -07 000000474 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:53:44.414 -07 000000591 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 03:53:44.414 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:53:44.414 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 03:53:44.414 -07 000000591 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 03:53:44.424 -07 000000591 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 03:53:44.424 -07 000000591 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 03:53:44.434 -07 000000591 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-18 03:53:44.434 -07 000000591 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-18 03:53:44.434 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 03:53:44.484 -07 000000501 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 03:53:44.784 -07 000000012 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 03:53:44.784 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 03:53:44.784 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 03:53:44.784 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2637860568, 0x0, 559484976) start.
17-03-18 03:53:44.824 -07 000000447 INF: FPGA: Recv @CAMSNAP 380
17-03-18 03:53:44.824 -07 000000591 INF: FPGA: Recv CAMSNAP
17-03-18 03:53:44.824 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 382 ms to get response, and 384 ms overall
17-03-18 03:53:44.914 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2637860568, 0x0, 559484976) end. Duration was 127 ms.
17-03-18 03:53:44.914 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:53:44.914 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 03:53:44.914 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-18 03:53:44.924 -07 000000012 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 03:53:44.924 -07 000000474 INF: Autofocus start
17-03-18 03:53:44.924 -07 000000474 INF: MeasureProfile start
17-03-18 03:53:44.924 -07 000000591 INF: FPGA: Recv FOCMRRCUR 
17-03-18 03:53:44.934 -07 000000012 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 03:53:44.934 -07 000000012 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 03:53:44.934 -07 000000474 INF: MeasureProfile done
17-03-18 03:53:44.934 -07 000000474 INF: X=16  Z correction [um]=0.01042744
17-03-18 03:53:44.934 -07 000000474 INF: Autofocus finished
17-03-18 03:53:45.134 -07 000000590 INF: FPGA: Recv FOCMRRIMG
17-03-18 03:53:45.134 -07 000000012 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 03:53:45.134 -07 000000610 INF: ------------ Scan Snapping tile 12 at Y-position 69.02587890625, Z-position -0.17484564045826. ----------
17-03-18 03:53:45.134 -07 000000610 INF: Cycle	118	Tile	12	Exposure Settings		A	412	G	198	T	198	C	412
17-03-18 03:53:45.144 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36708, sync = True, waitForSettling = True)
17-03-18 03:53:45.144 -07 000000610 INF: Z Motor: Moving to -0.168038 mm, started at -0.174846 mm, distance = 6.81 um
17-03-18 03:53:45.144 -07 000000610 INF: FPGA: Xmit ZDACW 36708\n [Z Motor]
17-03-18 03:53:45.144 -07 000000590 INF: FPGA: Recv ZDACW
17-03-18 03:53:45.154 -07 000000610 INF: FPGA: 'ZDACW 36708' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:45.154 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:53:45.154 -07 000000591 INF: FPGA: Recv ZDACR 36708
17-03-18 03:53:45.164 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:45.164 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 03:53:45.314 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:53:45.314 -07 000000012 INF: FPGA: Recv ZSGSRD 35449
17-03-18 03:53:45.324 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:53:45.324 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:53:45.324 -07 000000625 INF: FPGA: Recv ZSGSRD 35453
17-03-18 03:53:45.334 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:45.334 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:53:45.334 -07 000000474 INF: FPGA: Recv ZSGSRD 35447
17-03-18 03:53:45.344 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:45.344 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:53:45.344 -07 000000501 INF: FPGA: Recv ZSGSRD 35452
17-03-18 03:53:45.354 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:45.354 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:53:45.354 -07 000000625 INF: FPGA: Recv ZSGSRD 35448
17-03-18 03:53:45.364 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 03:53:45.364 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:53:45.364 -07 000000590 INF: FPGA: Recv ZSGSRD 35448
17-03-18 03:53:45.374 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:45.374 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:53:45.374 -07 000000591 INF: FPGA: Recv ZSGSRD 35446
17-03-18 03:53:45.384 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:45.384 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:53:45.384 -07 000000474 INF: FPGA: Recv ZSGSRD 35450
17-03-18 03:53:45.394 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:45.394 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:53:45.394 -07 000000625 INF: FPGA: Recv ZSGSRD 35451
17-03-18 03:53:45.404 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:45.404 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:53:45.404 -07 000000447 INF: FPGA: Recv ZSGSRD 35444
17-03-18 03:53:45.414 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:45.414 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:53:45.414 -07 000000591 INF: FPGA: Recv ZPIEZORD 31172
17-03-18 03:53:45.424 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:45.424 -07 000000610 INF: Z Motor: Piezo is near 46.6 V (nominally 0 to 100 V), expect near 56.0 V, since DAC is at 5.601 V. Piezo Error = -9.4 V.
17-03-18 03:53:45.424 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.0 um, Read 10 ADC samples: Avg = 35449 (-167.2 uncal um), Error = 0.9 uncal um, Median = 35448 (-167.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35444 (-167.2 uncal um), Max = 35453 (-167.2 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 03:53:45.424 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35449, posNoise = 4, negNoise = 5
17-03-18 03:53:45.424 -07 000000610 INF: Z Motor: After move to -0.168038, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:53:45.424 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 03:53:45.424 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:53:45.424 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:53:45.424 -07 000000590 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:53:45.424 -07 000000447 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:53:45.424 -07 000000012 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 03:53:45.424 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:53:45.424 -07 000000591 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 03:53:45.424 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 03:53:45.424 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 03:53:45.424 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 03:53:45.424 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 03:53:45.424 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 03:53:45.434 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-18 03:53:45.434 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 03:53:45.434 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-18 03:53:45.434 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 03:53:45.444 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 03:53:45.444 -07 000000012 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 03:53:45.444 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-18 03:53:45.444 -07 000000591 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 03:53:45.454 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 412 412 198 198 36885 150\n [Camera]
17-03-18 03:53:45.654 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 03:53:46.064 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 604
17-03-18 03:53:46.064 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 604
17-03-18 03:53:46.064 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:53:46.064 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:53:46.064 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 03:53:46.064 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 604
17-03-18 03:53:46.064 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 604
17-03-18 03:53:46.064 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:53:46.064 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:53:46.064 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 2162365984, 0x0, 418435064) start.
17-03-18 03:53:46.254 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36885 797
17-03-18 03:53:46.404 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP turning grn on 947
17-03-18 03:53:46.454 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 389 ms.
17-03-18 03:53:46.454 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-18 03:53:46.454 -07 000000474 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:53:46.454 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:53:46.454 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-18 03:53:46.454 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 2162365984, 0x0, 418435064) end. Duration was 391 ms.
17-03-18 03:53:46.454 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-18 03:53:46.454 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:53:46.464 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:53:46.464 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-18 03:53:46.604 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1145
17-03-18 03:53:46.604 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1145
17-03-18 03:53:46.604 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:53:46.604 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1145
17-03-18 03:53:46.604 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:53:46.604 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 2197788248, 0x0, 391868352) start.
17-03-18 03:53:46.604 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1145
17-03-18 03:53:46.604 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:53:46.604 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:53:46.604 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 2233210512, 0x0, 418435064) start.
17-03-18 03:53:46.614 -07 000000012 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 03:53:46.614 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 117. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1690, R2=1759, Total=3449. Warn if over 250 bubbles per interval.
17-03-18 03:53:46.794 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP 1338
17-03-18 03:53:46.794 -07 000000625 INF: FPGA: Recv CAMDBLSNAP
17-03-18 03:53:46.794 -07 000000610 INF: FPGA: 'CAMDBLSNAP 412 412 198 198 36885 150' command took 2 ms to send, 1335 ms to get response, and 1344 ms overall
17-03-18 03:53:46.794 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 03:53:46.794 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 13 at Y-position 69.02587890625, Z-Position -0.168055248224419. ------
17-03-18 03:53:46.804 -07 000000591 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 03:53:46.804 -07 000000480 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.8726 mm, moving Z to -0.17438 mm
17-03-18 03:53:46.804 -07 000000480 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 03:53:46.804 -07 000000012 INF: FPGA: Recv FOCMRRCUR 
17-03-18 03:53:46.804 -07 000000625 INF: Y Motor: Entering MoveAbsStepped (target = 111796 steps, sync = True, waitForSettling = True)
17-03-18 03:53:46.804 -07 000000625 INF: Y Motor: Moving to 69.8726 mm, started at 69.0259 mm, delta = 0.8467 mm
17-03-18 03:53:46.804 -07 000000447 INF: Z Motor: Entering MoveAbsStepped (DAC = 38092, sync = True, waitForSettling = False)
17-03-18 03:53:46.804 -07 000000447 INF: Z Motor: Moving to -0.174374 mm, started at -0.168055 mm, distance = -6.32 um
17-03-18 03:53:46.814 -07 000000591 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 03:53:46.814 -07 000000625 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:53:46.814 -07 000000501 INF: FPGA: Recv YRDPOS 141366
17-03-18 03:53:46.824 -07 000000447 INF: FPGA: Xmit ZDACW 38092\n [Z Motor]
17-03-18 03:53:46.824 -07 000000625 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-18 03:53:46.824 -07 000000625 INF: Y Motor: Encoder = 141366 = motor step 110442.2 = 69.0264 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:53:46.824 -07 000000012 INF: FPGA: Recv ZDACW
17-03-18 03:53:46.824 -07 000000625 INF: Y Motor: Last commanded position = 69.0426 mm (110468.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 03:53:46.824 -07 000000625 INF: Y Motor: Moving 1354 steps-34
17-03-18 03:53:46.834 -07 000000591 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 03:53:46.834 -07 000000447 INF: FPGA: 'ZDACW 38092' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-18 03:53:46.844 -07 000000625 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 03:53:46.854 -07 000000447 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:53:46.854 -07 000000012 INF: FPGA: Recv ZDACR 38092
17-03-18 03:53:46.864 -07 000000447 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 03:53:46.864 -07 000000447 INF: Z Motor: MoveAbsStepped took 53 ms (did NOT wait for settling yet))
17-03-18 03:53:46.984 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 2233210512, 0x0, 418435064) end. Duration was 378 ms.
17-03-18 03:53:46.984 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-18 03:53:46.984 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:53:46.984 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 2197788248, 0x0, 391868352) end. Duration was 381 ms.
17-03-18 03:53:46.984 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-18 03:53:46.984 -07 000000474 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:53:46.994 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 03:53:46.994 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 03:53:46.994 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-18 03:53:46.994 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-18 03:53:47.034 -07 000000590 INF: FPGA: Recv FOCMRRFOC
17-03-18 03:53:47.034 -07 000000591 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 03:53:47.214 -07 000000590 INF: FPGA: Recv YMVTILE
17-03-18 03:53:47.214 -07 000000625 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 394 ms overall
17-03-18 03:53:47.264 -07 000000625 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:53:47.274 -07 000000590 INF: FPGA: Recv YRDPOS 143077
17-03-18 03:53:47.274 -07 000000625 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 03:53:47.274 -07 000000625 INF: Y Motor: Encoder = 143077 = motor step 111778.9 = 69.8618 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:53:47.274 -07 000000625 INF: Y Motor: Position error before settling (table move) = -22 encoder counts (-0.011 mm)
17-03-18 03:53:47.274 -07 000000625 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.847 mm, average velocity = 2.149 mm/sec
17-03-18 03:53:48.224 -07 000000625 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:53:48.224 -07 000000591 INF: FPGA: Recv YRDPOS 143078
17-03-18 03:53:48.234 -07 000000625 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:48.234 -07 000000625 INF: Y Motor: Encoder = 143078 = motor step 111779.7 = 69.8623 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:53:48.264 -07 000000625 INF: Y Motor: After move to 69.872612, error = -0.010307, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 03:53:48.264 -07 000000625 INF: Y Motor: Position error after settling (table move) = -21 encoder counts (-0.010 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 03:53:48.264 -07 000000625 INF: Y Motor: Moved to 69.8623 after 1455 ms (table move)
17-03-18 03:53:48.264 -07 000000480 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174374 mm (DAC = 38092)
17-03-18 03:53:48.264 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:53:48.264 -07 000000590 INF: FPGA: Recv ZSGSRD 36433
17-03-18 03:53:48.274 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 03:53:48.274 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:53:48.274 -07 000000625 INF: FPGA: Recv ZSGSRD 36435
17-03-18 03:53:48.284 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:48.284 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:53:48.284 -07 000000625 INF: FPGA: Recv ZSGSRD 36434
17-03-18 03:53:48.294 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:48.294 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:53:48.294 -07 000000590 INF: FPGA: Recv ZSGSRD 36436
17-03-18 03:53:48.304 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:48.304 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:53:48.304 -07 000000590 INF: FPGA: Recv ZSGSRD 36431
17-03-18 03:53:48.314 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:48.314 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:53:48.314 -07 000000590 INF: FPGA: Recv ZSGSRD 36429
17-03-18 03:53:48.324 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:48.324 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:53:48.324 -07 000000590 INF: FPGA: Recv ZSGSRD 36432
17-03-18 03:53:48.334 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:48.334 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:53:48.344 -07 000000590 INF: FPGA: Recv ZSGSRD 36438
17-03-18 03:53:48.344 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 03:53:48.344 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:53:48.344 -07 000000590 INF: FPGA: Recv ZSGSRD 36436
17-03-18 03:53:48.354 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:48.354 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:53:48.354 -07 000000590 INF: FPGA: Recv ZSGSRD 36435
17-03-18 03:53:48.364 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:48.364 -07 000000480 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:53:48.364 -07 000000590 INF: FPGA: Recv ZPIEZORD 32484
17-03-18 03:53:48.374 -07 000000480 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:48.374 -07 000000480 INF: Z Motor: Piezo is near 49.4 V (nominally 0 to 100 V), expect near 58.1 V, since DAC is at 5.812 V. Piezo Error = -8.7 V.
17-03-18 03:53:48.374 -07 000000480 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.4 um, Read 10 ADC samples: Avg = 36434 (-173.5 uncal um), Error = 0.9 uncal um, Median = 36434 (-173.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 36429 (-173.5 uncal um), Max = 36438 (-173.5 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 03:53:48.374 -07 000000480 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36434, posNoise = 4, negNoise = 5
17-03-18 03:53:48.374 -07 000000480 INF: Z Motor: After move to -0.174374, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:53:48.374 -07 000000480 INF: Z Motor: Settle wait time = 1458 ms, measure time = 106 ms (allowed 150 ms), total time = 1564 ms
17-03-18 03:53:48.374 -07 000000480 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-18 03:53:48.424 -07 000000480 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1617 ms
17-03-18 03:53:48.424 -07 000000480 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 03:53:48.424 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:53:48.424 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:53:48.424 -07 000000591 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:53:48.424 -07 000000590 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:53:48.424 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 03:53:48.424 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:53:48.434 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 03:53:48.434 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 03:53:48.434 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 03:53:48.434 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 03:53:48.444 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 9 ms.
17-03-18 03:53:48.444 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 14 ms.
17-03-18 03:53:48.444 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 03:53:48.494 -07 000000591 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 03:53:48.784 -07 000000591 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 03:53:48.794 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 03:53:48.794 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 03:53:48.794 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2373830416, 0x0, 559484976) start.
17-03-18 03:53:48.814 -07 000000590 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 118, FrontChillerTemperature: 3.990831,
17-03-18 03:53:48.824 -07 000000480 INF: FPGA: Recv @CAMSNAP 380
17-03-18 03:53:48.834 -07 000000591 INF: FPGA: Recv CAMSNAP
17-03-18 03:53:48.834 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 380 ms to get response, and 385 ms overall
17-03-18 03:53:48.914 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2373830416, 0x0, 559484976) end. Duration was 126 ms.
17-03-18 03:53:48.914 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:53:48.914 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 03:53:48.914 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms.
17-03-18 03:53:48.934 -07 000000591 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 03:53:48.934 -07 000000480 INF: Autofocus start
17-03-18 03:53:48.934 -07 000000480 INF: MeasureProfile start
17-03-18 03:53:48.934 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-18 03:53:48.944 -07 000000591 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 03:53:48.944 -07 000000591 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 03:53:48.944 -07 000000480 INF: MeasureProfile done
17-03-18 03:53:48.944 -07 000000480 INF: X=0  Z correction [um]=-0.0713522
17-03-18 03:53:48.944 -07 000000480 INF: Autofocus finished
17-03-18 03:53:49.144 -07 000000462 INF: FPGA: Recv FOCMRRIMG
17-03-18 03:53:49.144 -07 000000591 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 03:53:49.144 -07 000000610 INF: ------------ Scan Snapping tile 13 at Y-position 69.8623046875, Z-position -0.174383097184054. ----------
17-03-18 03:53:49.144 -07 000000610 INF: Cycle	118	Tile	13	Exposure Settings		A	412	G	198	T	198	C	412
17-03-18 03:53:49.154 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36589, sync = True, waitForSettling = True)
17-03-18 03:53:49.154 -07 000000610 INF: Z Motor: Moving to -0.167494 mm, started at -0.174383 mm, distance = 6.89 um
17-03-18 03:53:49.154 -07 000000610 INF: FPGA: Xmit ZDACW 36589\n [Z Motor]
17-03-18 03:53:49.154 -07 000000462 INF: FPGA: Recv ZDACW
17-03-18 03:53:49.164 -07 000000610 INF: FPGA: 'ZDACW 36589' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:49.164 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:53:49.164 -07 000000501 INF: FPGA: Recv ZDACR 36589
17-03-18 03:53:49.174 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:49.174 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 03:53:49.324 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:53:49.324 -07 000000611 INF: FPGA: Recv ZSGSRD 35366
17-03-18 03:53:49.334 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:53:49.334 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:53:49.334 -07 000000462 INF: FPGA: Recv ZSGSRD 35363
17-03-18 03:53:49.344 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:49.344 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:53:49.344 -07 000000462 INF: FPGA: Recv ZSGSRD 35361
17-03-18 03:53:49.354 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:49.354 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:53:49.354 -07 000000462 INF: FPGA: Recv ZSGSRD 35358
17-03-18 03:53:49.364 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:49.364 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:53:49.364 -07 000000462 INF: FPGA: Recv ZSGSRD 35366
17-03-18 03:53:49.374 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:49.374 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:53:49.374 -07 000000462 INF: FPGA: Recv ZSGSRD 35364
17-03-18 03:53:49.384 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:49.384 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:53:49.384 -07 000000611 INF: FPGA: Recv ZSGSRD 35363
17-03-18 03:53:49.394 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:49.394 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:53:49.394 -07 000000611 INF: FPGA: Recv ZSGSRD 35369
17-03-18 03:53:49.404 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:49.404 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:53:49.404 -07 000000611 INF: FPGA: Recv ZSGSRD 35357
17-03-18 03:53:49.414 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:49.414 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:53:49.414 -07 000000611 INF: FPGA: Recv ZSGSRD 35363
17-03-18 03:53:49.424 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:49.424 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:53:49.424 -07 000000611 INF: FPGA: Recv ZPIEZORD 31078
17-03-18 03:53:49.434 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:49.434 -07 000000610 INF: Z Motor: Piezo is near 46.4 V (nominally 0 to 100 V), expect near 55.8 V, since DAC is at 5.583 V. Piezo Error = -9.4 V.
17-03-18 03:53:49.434 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.5 um, Read 10 ADC samples: Avg = 35363 (-166.6 uncal um), Error = 0.9 uncal um, Median = 35363 (-166.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35357 (-166.6 uncal um), Max = 35369 (-166.7 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 03:53:49.434 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35363, posNoise = 6, negNoise = 6
17-03-18 03:53:49.434 -07 000000610 INF: Z Motor: After move to -0.167494, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:53:49.434 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-18 03:53:49.434 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:53:49.434 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:53:49.434 -07 000000590 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:53:49.434 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 03:53:49.434 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:53:49.434 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:53:49.434 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 03:53:49.434 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 03:53:49.434 -07 000000591 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 03:53:49.434 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 03:53:49.434 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 03:53:49.434 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 03:53:49.434 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-18 03:53:49.444 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 03:53:49.444 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 03:53:49.444 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 03:53:49.454 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 03:53:49.454 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 03:53:49.454 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 17 ms.
17-03-18 03:53:49.454 -07 000000591 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 03:53:49.464 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 412 412 198 198 36766 150\n [Camera]
17-03-18 03:53:49.654 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 03:53:50.074 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 604
17-03-18 03:53:50.074 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 604
17-03-18 03:53:50.074 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:53:50.074 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:53:50.074 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 03:53:50.074 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 604
17-03-18 03:53:50.074 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 604
17-03-18 03:53:50.074 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:53:50.074 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:53:50.074 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start.
17-03-18 03:53:50.264 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36766 797
17-03-18 03:53:50.414 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning grn on 950
17-03-18 03:53:50.474 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 397 ms.
17-03-18 03:53:50.474 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 03:53:50.474 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:53:50.474 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:53:50.474 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 03:53:50.474 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 399 ms.
17-03-18 03:53:50.474 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 03:53:50.474 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:53:50.474 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:53:50.484 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-18 03:53:50.614 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1145
17-03-18 03:53:50.614 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1145
17-03-18 03:53:50.614 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:53:50.614 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:53:50.614 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) start.
17-03-18 03:53:50.614 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1145
17-03-18 03:53:50.614 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1145
17-03-18 03:53:50.614 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:53:50.614 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:53:50.614 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 03:53:50.804 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP 1337
17-03-18 03:53:50.804 -07 000000512 INF: FPGA: Recv CAMDBLSNAP
17-03-18 03:53:50.804 -07 000000610 INF: FPGA: 'CAMDBLSNAP 412 412 198 198 36766 150' command took 2 ms to send, 1334 ms to get response, and 1344 ms overall
17-03-18 03:53:50.804 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 03:53:50.804 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 14 at Y-position 69.8623046875, Z-Position -0.167502765980228. ------
17-03-18 03:53:50.814 -07 000000012 INF: Y Motor: MoveYZ optimized starting. Moving Y to 70.7026 mm, moving Z to -0.17344 mm
17-03-18 03:53:50.814 -07 000000012 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 03:53:50.814 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 03:53:50.814 -07 000000502 INF: Y Motor: Entering MoveAbsStepped (target = 113124 steps, sync = True, waitForSettling = True)
17-03-18 03:53:50.814 -07 000000502 INF: Y Motor: Moving to 70.7026 mm, started at 69.8623 mm, delta = 0.8403 mm
17-03-18 03:53:50.814 -07 000000611 INF: Z Motor: Entering MoveAbsStepped (DAC = 37888, sync = True, waitForSettling = False)
17-03-18 03:53:50.814 -07 000000611 INF: Z Motor: Moving to -0.173440 mm, started at -0.167503 mm, distance = -5.94 um
17-03-18 03:53:50.814 -07 000000462 INF: FPGA: Recv FOCMRRCUR 
17-03-18 03:53:50.824 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 03:53:50.824 -07 000000611 INF: FPGA: Xmit ZDACW 37888\n [Z Motor]
17-03-18 03:53:50.824 -07 000000590 INF: FPGA: Recv ZDACW
17-03-18 03:53:50.834 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:53:50.834 -07 000000611 INF: FPGA: 'ZDACW 37888' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-18 03:53:50.834 -07 000000590 INF: FPGA: Recv YRDPOS 143078
17-03-18 03:53:50.844 -07 000000512 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 03:53:50.844 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-18 03:53:50.844 -07 000000502 INF: Y Motor: Encoder = 143078 = motor step 111779.7 = 69.8623 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:53:50.844 -07 000000502 INF: Y Motor: Last commanded position = 69.8726 mm (111796.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 03:53:50.844 -07 000000502 INF: Y Motor: Moving 1344 steps-22
17-03-18 03:53:50.854 -07 000000611 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:53:50.854 -07 000000590 INF: FPGA: Recv ZDACR 37888
17-03-18 03:53:50.864 -07 000000502 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 03:53:50.864 -07 000000611 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 03:53:50.864 -07 000000611 INF: Z Motor: MoveAbsStepped took 45 ms (did NOT wait for settling yet))
17-03-18 03:53:51.024 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) end. Duration was 403 ms.
17-03-18 03:53:51.024 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 03:53:51.024 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:53:51.024 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 402 ms.
17-03-18 03:53:51.024 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-18 03:53:51.024 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:53:51.024 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 03:53:51.024 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms.
17-03-18 03:53:51.024 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 03:53:51.034 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-18 03:53:51.714 -07 000000590 INF: FPGA: Recv FOCMRRFOC
17-03-18 03:53:51.714 -07 000000590 INF: FPGA: Recv YMVTILE
17-03-18 03:53:51.714 -07 000000590 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 03:53:51.714 -07 000000502 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 840 ms to get response, and 870 ms overall
17-03-18 03:53:51.714 -07 000000512 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 861 ms to get response, and 891 ms overall
17-03-18 03:53:51.714 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 117. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1690, R2=1759, Total=3449. Warn if over 250 bubbles per interval.
17-03-18 03:53:51.764 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:53:51.764 -07 000000462 INF: FPGA: Recv YRDPOS 144768
17-03-18 03:53:51.774 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:51.774 -07 000000502 INF: Y Motor: Encoder = 144768 = motor step 113100.0 = 70.6875 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:53:51.774 -07 000000502 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-18 03:53:51.774 -07 000000502 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 870 ms, distance = 0.840 mm, average velocity = 0.966 mm/sec
17-03-18 03:53:52.724 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:53:52.724 -07 000000512 INF: FPGA: Recv YRDPOS 144768
17-03-18 03:53:52.734 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:53:52.734 -07 000000502 INF: Y Motor: Encoder = 144768 = motor step 113100.0 = 70.6875 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:53:52.774 -07 000000502 INF: Y Motor: After move to 70.702606, error = -0.015106, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 03:53:52.774 -07 000000502 INF: Y Motor: Position error after settling (table move) = -31 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 03:53:52.774 -07 000000502 INF: Y Motor: Moved to 70.6875 after 1957 ms (table move)
17-03-18 03:53:52.774 -07 000000012 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173440 mm (DAC = 37888)
17-03-18 03:53:52.774 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:53:52.784 -07 000000462 INF: FPGA: Recv ZSGSRD 36287
17-03-18 03:53:52.784 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 03:53:52.784 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:53:52.784 -07 000000611 INF: FPGA: Recv ZSGSRD 36288
17-03-18 03:53:52.794 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 03:53:52.794 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:53:52.794 -07 000000502 INF: FPGA: Recv ZSGSRD 36289
17-03-18 03:53:52.804 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:52.804 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:53:52.804 -07 000000611 INF: FPGA: Recv ZSGSRD 36284
17-03-18 03:53:52.814 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:52.814 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:53:52.814 -07 000000447 INF: FPGA: Recv ZSGSRD 36289
17-03-18 03:53:52.824 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:52.824 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:53:52.824 -07 000000512 INF: FPGA: Recv ZSGSRD 36291
17-03-18 03:53:52.834 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:52.834 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:53:52.834 -07 000000512 INF: FPGA: Recv ZSGSRD 36285
17-03-18 03:53:52.844 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:52.844 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:53:52.844 -07 000000512 INF: FPGA: Recv ZSGSRD 36289
17-03-18 03:53:52.854 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:52.854 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:53:52.854 -07 000000512 INF: FPGA: Recv ZSGSRD 36291
17-03-18 03:53:52.864 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:52.864 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:53:52.864 -07 000000512 INF: FPGA: Recv ZSGSRD 36293
17-03-18 03:53:52.874 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:52.874 -07 000000012 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:53:52.874 -07 000000512 INF: FPGA: Recv ZPIEZORD 32326
17-03-18 03:53:52.884 -07 000000012 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:52.884 -07 000000012 INF: Z Motor: Piezo is near 49.1 V (nominally 0 to 100 V), expect near 57.8 V, since DAC is at 5.781 V. Piezo Error = -8.8 V.
17-03-18 03:53:52.884 -07 000000012 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.4 um, Read 10 ADC samples: Avg = 36289 (-172.6 uncal um), Error = 0.9 uncal um, Median = 36289 (-172.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 36284 (-172.5 uncal um), Max = 36293 (-172.6 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 03:53:52.884 -07 000000012 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36289, posNoise = 4, negNoise = 5
17-03-18 03:53:52.884 -07 000000012 INF: Z Motor: After move to -0.173440, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:53:52.884 -07 000000012 INF: Z Motor: Settle wait time = 1962 ms, measure time = 103 ms (allowed 150 ms), total time = 2065 ms
17-03-18 03:53:52.884 -07 000000012 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-18 03:53:52.934 -07 000000012 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2117 ms
17-03-18 03:53:52.934 -07 000000012 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 03:53:52.934 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:53:52.934 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:53:52.934 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:53:52.934 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:53:52.934 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 03:53:52.934 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:53:52.944 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 03:53:52.944 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 03:53:52.944 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 03:53:52.944 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 03:53:52.944 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 03:53:52.944 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-18 03:53:52.954 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 03:53:52.994 -07 000000474 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 03:53:53.294 -07 000000447 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 03:53:53.294 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 03:53:53.294 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 03:53:53.424 -07 000000502 INF: FPGA: Recv @CAMSNAP 380
17-03-18 03:53:53.424 -07 000000502 INF: FPGA: Recv CAMSNAP
17-03-18 03:53:53.424 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 468 ms to get response, and 475 ms overall
17-03-18 03:53:53.424 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2147487792, 0x0, 559484976) start.
17-03-18 03:53:53.544 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2147487792, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 03:53:53.544 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:53:53.544 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 03:53:53.544 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 246 ms.
17-03-18 03:53:53.624 -07 000000618 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 03:53:53.624 -07 000000512 INF: Autofocus start
17-03-18 03:53:53.624 -07 000000512 INF: MeasureProfile start
17-03-18 03:53:53.624 -07 000000611 INF: FPGA: Recv FOCMRRCUR 
17-03-18 03:53:53.634 -07 000000618 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 03:53:53.634 -07 000000618 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 03:53:53.634 -07 000000512 INF: MeasureProfile done
17-03-18 03:53:53.634 -07 000000512 INF: X=112  Z correction [um]=0.5011052
17-03-18 03:53:53.634 -07 000000512 INF: Autofocus finished
17-03-18 03:53:53.834 -07 000000502 INF: FPGA: Recv FOCMRRIMG
17-03-18 03:53:53.834 -07 000000618 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 03:53:53.834 -07 000000610 INF: ------------ Scan Snapping tile 14 at Y-position 70.6875, Z-position -0.173451586423498. ----------
17-03-18 03:53:53.834 -07 000000610 INF: Cycle	118	Tile	14	Exposure Settings		A	412	G	198	T	198	C	412
17-03-18 03:53:53.844 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36510, sync = True, waitForSettling = True)
17-03-18 03:53:53.844 -07 000000610 INF: Z Motor: Moving to -0.167132 mm, started at -0.173452 mm, distance = 6.32 um
17-03-18 03:53:53.844 -07 000000610 INF: FPGA: Xmit ZDACW 36510\n [Z Motor]
17-03-18 03:53:53.844 -07 000000591 INF: FPGA: Recv ZDACW
17-03-18 03:53:53.854 -07 000000610 INF: FPGA: 'ZDACW 36510' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:53.864 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:53:53.864 -07 000000502 INF: FPGA: Recv ZDACR 36510
17-03-18 03:53:53.874 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 03:53:53.874 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 03:53:54.024 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:53:54.024 -07 000000462 INF: FPGA: Recv ZSGSRD 35309
17-03-18 03:53:54.034 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:53:54.034 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:53:54.034 -07 000000618 INF: FPGA: Recv ZSGSRD 35307
17-03-18 03:53:54.044 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:54.044 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:53:54.044 -07 000000512 INF: FPGA: Recv ZSGSRD 35300
17-03-18 03:53:54.054 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:54.054 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:53:54.054 -07 000000618 INF: FPGA: Recv ZSGSRD 35311
17-03-18 03:53:54.064 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:54.064 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:53:54.064 -07 000000474 INF: FPGA: Recv ZSGSRD 35310
17-03-18 03:53:54.074 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:54.074 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:53:54.074 -07 000000501 INF: FPGA: Recv ZSGSRD 35303
17-03-18 03:53:54.084 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:54.084 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:53:54.084 -07 000000501 INF: FPGA: Recv ZSGSRD 35304
17-03-18 03:53:54.094 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:54.094 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:53:54.094 -07 000000474 INF: FPGA: Recv ZSGSRD 35308
17-03-18 03:53:54.104 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:54.104 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:53:54.104 -07 000000611 INF: FPGA: Recv ZSGSRD 35305
17-03-18 03:53:54.114 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:54.114 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:53:54.114 -07 000000474 INF: FPGA: Recv ZSGSRD 35305
17-03-18 03:53:54.124 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:54.124 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:53:54.124 -07 000000611 INF: FPGA: Recv ZPIEZORD 31004
17-03-18 03:53:54.134 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:54.134 -07 000000610 INF: Z Motor: Piezo is near 46.2 V (nominally 0 to 100 V), expect near 55.7 V, since DAC is at 5.571 V. Piezo Error = -9.5 V.
17-03-18 03:53:54.134 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.1 um, Read 10 ADC samples: Avg = 35306 (-166.3 uncal um), Error = 0.9 uncal um, Median = 35306 (-166.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35300 (-166.2 uncal um), Max = 35311 (-166.3 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 03:53:54.134 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35306, posNoise = 5, negNoise = 6
17-03-18 03:53:54.134 -07 000000610 INF: Z Motor: After move to -0.167132, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:53:54.134 -07 000000610 INF: Z Motor: MoveAbsStepped took 290 ms)
17-03-18 03:53:54.134 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:53:54.134 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:53:54.134 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:53:54.134 -07 000000591 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 03:53:54.134 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:53:54.134 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 03:53:54.134 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 03:53:54.134 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:53:54.134 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 03:53:54.134 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 03:53:54.134 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 03:53:54.134 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 03:53:54.144 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 03:53:54.144 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 03:53:54.144 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 03:53:54.144 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 03:53:54.144 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 03:53:54.144 -07 000000591 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 03:53:54.154 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 03:53:54.154 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 03:53:54.154 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 412 412 198 198 36686 150\n [Camera]
17-03-18 03:53:54.194 -07 000000611 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 118, FrontChillerTemperature: 4.003063,
17-03-18 03:53:54.354 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 03:53:54.764 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 604
17-03-18 03:53:54.764 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 604
17-03-18 03:53:54.764 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:53:54.764 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 604
17-03-18 03:53:54.764 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 604
17-03-18 03:53:54.774 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:53:54.774 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:53:54.774 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-18 03:53:54.774 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:53:54.774 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2334002848, 0x0, 418435064) start.
17-03-18 03:53:54.954 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36686 797
17-03-18 03:53:55.104 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning grn on 947
17-03-18 03:53:55.164 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 394 ms.
17-03-18 03:53:55.164 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 03:53:55.164 -07 000000474 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:53:55.174 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2334002848, 0x0, 418435064) end. Duration was 395 ms.
17-03-18 03:53:55.174 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 03:53:55.174 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:53:55.174 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:53:55.174 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 03:53:55.174 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:53:55.184 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-18 03:53:55.304 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1145
17-03-18 03:53:55.304 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1145
17-03-18 03:53:55.304 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:53:55.314 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1145
17-03-18 03:53:55.314 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1145
17-03-18 03:53:55.314 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:53:55.424 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:53:55.424 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) start.
17-03-18 03:53:55.424 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:53:55.424 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) start.
17-03-18 03:53:55.494 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP 1337
17-03-18 03:53:55.494 -07 000000474 INF: FPGA: Recv CAMDBLSNAP
17-03-18 03:53:55.494 -07 000000610 INF: FPGA: 'CAMDBLSNAP 412 412 198 198 36686 150' command took 2 ms to send, 1339 ms to get response, and 1345 ms overall
17-03-18 03:53:55.504 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 03:53:55.504 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 15 at Y-position 70.6875, Z-Position -0.167136585888147. ------
17-03-18 03:53:55.504 -07 000000618 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 03:53:55.504 -07 000000012 INF: Y Motor: MoveYZ optimized starting. Moving Y to 71.5326 mm, moving Z to -0.17386 mm
17-03-18 03:53:55.504 -07 000000012 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 03:53:55.504 -07 000000608 INF: Y Motor: Entering MoveAbsStepped (target = 114452 steps, sync = True, waitForSettling = True)
17-03-18 03:53:55.504 -07 000000501 INF: Z Motor: Entering MoveAbsStepped (DAC = 37980, sync = True, waitForSettling = False)
17-03-18 03:53:55.504 -07 000000501 INF: Z Motor: Moving to -0.173861 mm, started at -0.167137 mm, distance = -6.72 um
17-03-18 03:53:55.504 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-18 03:53:55.504 -07 000000608 INF: Y Motor: Moving to 71.5326 mm, started at 70.6875 mm, delta = 0.8451 mm
17-03-18 03:53:55.514 -07 000000618 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 03:53:55.514 -07 000000501 INF: FPGA: Xmit ZDACW 37980\n [Z Motor]
17-03-18 03:53:55.514 -07 000000590 INF: FPGA: Recv ZDACW
17-03-18 03:53:55.524 -07 000000501 INF: FPGA: 'ZDACW 37980' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-18 03:53:55.524 -07 000000501 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:53:55.524 -07 000000611 INF: FPGA: Recv ZDACR 37980
17-03-18 03:53:55.534 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:53:55.534 -07 000000501 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:55.534 -07 000000501 INF: Z Motor: MoveAbsStepped took 23 ms (did NOT wait for settling yet))
17-03-18 03:53:55.534 -07 000000611 INF: FPGA: Recv YRDPOS 144768
17-03-18 03:53:55.544 -07 000000618 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 03:53:55.544 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 31 ms overall
17-03-18 03:53:55.544 -07 000000608 INF: Y Motor: Encoder = 144768 = motor step 113100.0 = 70.6875 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:53:55.544 -07 000000608 INF: Y Motor: Last commanded position = 70.7026 mm (113124.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 03:53:55.544 -07 000000608 INF: Y Motor: Moving 1352 steps-31
17-03-18 03:53:55.554 -07 000000608 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 03:53:55.744 -07 000000501 INF: FPGA: Recv FOCMRRFOC
17-03-18 03:53:55.744 -07 000000618 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 232 ms overall
17-03-18 03:53:55.824 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) end. Duration was 401 ms.
17-03-18 03:53:55.824 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-18 03:53:55.824 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:53:55.824 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) end. Duration was 400 ms.
17-03-18 03:53:55.824 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 03:53:55.824 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:53:55.824 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 03:53:55.824 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 03:53:55.824 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 521 ms.
17-03-18 03:53:55.834 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 524 ms.
17-03-18 03:53:55.924 -07 000000611 INF: FPGA: Recv YMVTILE
17-03-18 03:53:55.924 -07 000000608 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-18 03:53:55.974 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:53:55.974 -07 000000591 INF: FPGA: Recv YRDPOS 146468
17-03-18 03:53:55.984 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 03:53:55.984 -07 000000608 INF: Y Motor: Encoder = 146468 = motor step 114428.1 = 71.5176 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:53:55.984 -07 000000608 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-18 03:53:55.984 -07 000000608 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 387 ms, distance = 0.845 mm, average velocity = 2.184 mm/sec
17-03-18 03:53:56.614 -07 000000625 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 03:53:56.614 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 117. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1690, R2=1759, Total=3449. Warn if over 250 bubbles per interval.
17-03-18 03:53:56.934 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:53:56.934 -07 000000474 INF: FPGA: Recv YRDPOS 146468
17-03-18 03:53:56.944 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:53:56.944 -07 000000608 INF: Y Motor: Encoder = 146468 = motor step 114428.1 = 71.5176 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:53:56.964 -07 000000608 INF: Y Motor: After move to 71.532608, error = -0.015030, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 03:53:56.964 -07 000000608 INF: Y Motor: Position error after settling (table move) = -31 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 03:53:56.974 -07 000000608 INF: Y Motor: Moved to 71.5176 after 1462 ms (table move)
17-03-18 03:53:56.974 -07 000000012 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173861 mm (DAC = 37980)
17-03-18 03:53:56.974 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:53:56.974 -07 000000502 INF: FPGA: Recv ZSGSRD 36360
17-03-18 03:53:56.984 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 03:53:56.984 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:53:56.984 -07 000000591 INF: FPGA: Recv ZSGSRD 36350
17-03-18 03:53:56.994 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:56.994 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:53:56.994 -07 000000502 INF: FPGA: Recv ZSGSRD 36358
17-03-18 03:53:57.004 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:57.004 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:53:57.004 -07 000000447 INF: FPGA: Recv ZSGSRD 36350
17-03-18 03:53:57.014 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:57.014 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:53:57.014 -07 000000591 INF: FPGA: Recv ZSGSRD 36361
17-03-18 03:53:57.024 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:57.024 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:53:57.024 -07 000000502 INF: FPGA: Recv ZSGSRD 36356
17-03-18 03:53:57.034 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:57.034 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:53:57.034 -07 000000608 INF: FPGA: Recv ZSGSRD 36345
17-03-18 03:53:57.044 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:57.044 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:53:57.044 -07 000000502 INF: FPGA: Recv ZSGSRD 36350
17-03-18 03:53:57.054 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:57.054 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:53:57.054 -07 000000447 INF: FPGA: Recv ZSGSRD 36361
17-03-18 03:53:57.064 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:57.064 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:53:57.064 -07 000000591 INF: FPGA: Recv ZSGSRD 36351
17-03-18 03:53:57.074 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:57.074 -07 000000012 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:53:57.074 -07 000000608 INF: FPGA: Recv ZPIEZORD 32411
17-03-18 03:53:57.084 -07 000000012 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:57.084 -07 000000012 INF: Z Motor: Piezo is near 49.2 V (nominally 0 to 100 V), expect near 58.0 V, since DAC is at 5.795 V. Piezo Error = -8.7 V.
17-03-18 03:53:57.084 -07 000000012 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.9 um, Read 10 ADC samples: Avg = 36354 (-173.0 uncal um), Error = 0.9 uncal um, Median = 36354 (-173.0 uncal um), StdDev = 6 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 36345 (-172.9 uncal um), Max = 36361 (-173.0 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-18 03:53:57.084 -07 000000012 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36354, posNoise = 7, negNoise = 9
17-03-18 03:53:57.084 -07 000000012 INF: Z Motor: After move to -0.173861, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:53:57.084 -07 000000012 INF: Z Motor: Settle wait time = 1466 ms, measure time = 108 ms (allowed 150 ms), total time = 1574 ms
17-03-18 03:53:57.084 -07 000000012 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-18 03:53:57.134 -07 000000012 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1625 ms
17-03-18 03:53:57.134 -07 000000012 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 03:53:57.134 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:53:57.134 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:53:57.134 -07 000000591 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:53:57.134 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:53:57.134 -07 000000608 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 03:53:57.134 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:53:57.134 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 03:53:57.134 -07 000000608 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 03:53:57.144 -07 000000608 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 03:53:57.144 -07 000000608 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 03:53:57.144 -07 000000608 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 03:53:57.144 -07 000000608 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-18 03:53:57.154 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 03:53:57.194 -07 000000625 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 03:53:57.494 -07 000000447 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 03:53:57.494 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 03:53:57.494 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 03:53:57.494 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 596199184, 0x0, 559484976) start.
17-03-18 03:53:57.534 -07 000000591 INF: FPGA: Recv @CAMSNAP 380
17-03-18 03:53:57.534 -07 000000012 INF: FPGA: Recv CAMSNAP
17-03-18 03:53:57.534 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 385 ms overall
17-03-18 03:53:57.624 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 596199184, 0x0, 559484976) end. Duration was 123 ms.
17-03-18 03:53:57.624 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:53:57.624 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 03:53:57.624 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 126 ms.
17-03-18 03:53:57.634 -07 000000447 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 03:53:57.634 -07 000000618 INF: Autofocus start
17-03-18 03:53:57.634 -07 000000618 INF: MeasureProfile start
17-03-18 03:53:57.634 -07 000000012 INF: FPGA: Recv FOCMRRCUR 
17-03-18 03:53:57.644 -07 000000447 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 03:53:57.644 -07 000000447 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 03:53:57.644 -07 000000618 INF: MeasureProfile done
17-03-18 03:53:57.644 -07 000000618 INF: X=16  Z correction [um]=0.01042744
17-03-18 03:53:57.644 -07 000000618 INF: Autofocus finished
17-03-18 03:53:57.844 -07 000000608 INF: FPGA: Recv FOCMRRIMG
17-03-18 03:53:57.844 -07 000000447 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 03:53:57.844 -07 000000610 INF: ------------ Scan Snapping tile 15 at Y-position 71.517578125, Z-position -0.173869160212713. ----------
17-03-18 03:53:57.844 -07 000000610 INF: Cycle	118	Tile	15	Exposure Settings		A	412	G	198	T	198	C	412
17-03-18 03:53:57.854 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36495, sync = True, waitForSettling = True)
17-03-18 03:53:57.854 -07 000000610 INF: Z Motor: Moving to -0.167063 mm, started at -0.173869 mm, distance = 6.81 um
17-03-18 03:53:57.854 -07 000000610 INF: FPGA: Xmit ZDACW 36495\n [Z Motor]
17-03-18 03:53:57.854 -07 000000474 INF: FPGA: Recv ZDACW
17-03-18 03:53:57.864 -07 000000610 INF: FPGA: 'ZDACW 36495' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:57.864 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:53:57.864 -07 000000512 INF: FPGA: Recv ZDACR 36495
17-03-18 03:53:57.874 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:57.874 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 03:53:58.024 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:53:58.024 -07 000000474 INF: FPGA: Recv ZSGSRD 35300
17-03-18 03:53:58.034 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:53:58.034 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:53:58.034 -07 000000590 INF: FPGA: Recv ZSGSRD 35300
17-03-18 03:53:58.044 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:58.044 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:53:58.044 -07 000000618 INF: FPGA: Recv ZSGSRD 35301
17-03-18 03:53:58.054 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:58.054 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:53:58.054 -07 000000474 INF: FPGA: Recv ZSGSRD 35296
17-03-18 03:53:58.064 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:58.064 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:53:58.064 -07 000000512 INF: FPGA: Recv ZSGSRD 35294
17-03-18 03:53:58.074 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:58.074 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:53:58.074 -07 000000590 INF: FPGA: Recv ZSGSRD 35298
17-03-18 03:53:58.084 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:58.084 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:53:58.084 -07 000000618 INF: FPGA: Recv ZSGSRD 35295
17-03-18 03:53:58.094 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:58.094 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:53:58.094 -07 000000512 INF: FPGA: Recv ZSGSRD 35295
17-03-18 03:53:58.104 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:58.104 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:53:58.104 -07 000000590 INF: FPGA: Recv ZSGSRD 35290
17-03-18 03:53:58.114 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:58.114 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:53:58.114 -07 000000512 INF: FPGA: Recv ZSGSRD 35293
17-03-18 03:53:58.124 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:58.124 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:53:58.124 -07 000000590 INF: FPGA: Recv ZPIEZORD 31014
17-03-18 03:53:58.134 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:53:58.134 -07 000000610 INF: Z Motor: Piezo is near 46.3 V (nominally 0 to 100 V), expect near 55.7 V, since DAC is at 5.569 V. Piezo Error = -9.4 V.
17-03-18 03:53:58.134 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.1 um, Read 10 ADC samples: Avg = 35296 (-166.2 uncal um), Error = 0.9 uncal um, Median = 35296 (-166.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35290 (-166.2 uncal um), Max = 35301 (-166.2 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 03:53:58.134 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35296, posNoise = 5, negNoise = 6
17-03-18 03:53:58.134 -07 000000610 INF: Z Motor: After move to -0.167063, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:53:58.134 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-18 03:53:58.134 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:53:58.134 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:53:58.134 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:53:58.134 -07 000000474 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:53:58.134 -07 000000608 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 03:53:58.134 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 03:53:58.134 -07 000000611 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 03:53:58.134 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:53:58.134 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 03:53:58.134 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 03:53:58.134 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 03:53:58.134 -07 000000611 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 03:53:58.134 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 03:53:58.134 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 03:53:58.144 -07 000000611 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 03:53:58.144 -07 000000611 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 03:53:58.144 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 03:53:58.144 -07 000000608 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 03:53:58.154 -07 000000611 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 03:53:58.154 -07 000000611 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 03:53:58.154 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 412 412 198 198 36671 150\n [Camera]
17-03-18 03:53:58.354 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 03:53:58.764 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 604
17-03-18 03:53:58.764 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 604
17-03-18 03:53:58.764 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:53:58.764 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 604
17-03-18 03:53:58.764 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 604
17-03-18 03:53:58.764 -07 000000474 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:53:58.764 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:53:58.764 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-18 03:53:58.774 -07 000000474 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:53:58.774 -07 000000474 INF: Camera: sBCa_ReadImage(785074704, 2334002848, 0x0, 418435064) start.
17-03-18 03:53:58.954 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36671 797
17-03-18 03:53:59.104 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP turning grn on 947
17-03-18 03:53:59.164 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 396 ms.
17-03-18 03:53:59.164 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 03:53:59.164 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:53:59.164 -07 000000474 INF: Camera: sBCa_ReadImage(785074704, 2334002848, 0x0, 418435064) end. Duration was 395 ms.
17-03-18 03:53:59.164 -07 000000474 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 03:53:59.164 -07 000000474 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:53:59.164 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:53:59.164 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 03:53:59.174 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:53:59.174 -07 000000474 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-18 03:53:59.304 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1147
17-03-18 03:53:59.304 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1147
17-03-18 03:53:59.304 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:53:59.314 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1147
17-03-18 03:53:59.314 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1147
17-03-18 03:53:59.314 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:53:59.314 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:53:59.314 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 03:53:59.314 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:53:59.314 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 2620985504, 0x0, 391868352) start.
17-03-18 03:53:59.494 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP 1337
17-03-18 03:53:59.494 -07 000000501 INF: FPGA: Recv CAMDBLSNAP
17-03-18 03:53:59.494 -07 000000610 INF: FPGA: 'CAMDBLSNAP 412 412 198 198 36671 150' command took 2 ms to send, 1337 ms to get response, and 1345 ms overall
17-03-18 03:53:59.504 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 03:53:59.504 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 16 at Y-position 71.517578125, Z-Position -0.16707234376673. ------
17-03-18 03:53:59.504 -07 000000474 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 03:53:59.504 -07 000000462 INF: Y Motor: MoveYZ optimized starting. Moving Y to 72.3626 mm, moving Z to -0.17348 mm
17-03-18 03:53:59.504 -07 000000462 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 03:53:59.504 -07 000000012 INF: Y Motor: Entering MoveAbsStepped (target = 115780 steps, sync = True, waitForSettling = True)
17-03-18 03:53:59.504 -07 000000611 INF: Z Motor: Entering MoveAbsStepped (DAC = 37897, sync = True, waitForSettling = False)
17-03-18 03:53:59.504 -07 000000611 INF: Z Motor: Moving to -0.173481 mm, started at -0.167072 mm, distance = -6.41 um
17-03-18 03:53:59.504 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-18 03:53:59.504 -07 000000012 INF: Y Motor: Moving to 72.3626 mm, started at 71.5176 mm, delta = 0.8450 mm
17-03-18 03:53:59.514 -07 000000474 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 03:53:59.514 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:53:59.514 -07 000000502 INF: FPGA: Recv YRDPOS 146469
17-03-18 03:53:59.524 -07 000000611 INF: FPGA: Xmit ZDACW 37897\n [Z Motor]
17-03-18 03:53:59.524 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-18 03:53:59.524 -07 000000012 INF: Y Motor: Encoder = 146469 = motor step 114428.9 = 71.5181 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:53:59.524 -07 000000502 INF: FPGA: Recv ZDACW
17-03-18 03:53:59.524 -07 000000012 INF: Y Motor: Last commanded position = 71.5326 mm (114452.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 03:53:59.524 -07 000000012 INF: Y Motor: Moving 1351 steps-31
17-03-18 03:53:59.534 -07 000000611 INF: FPGA: 'ZDACW 37897' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-18 03:53:59.534 -07 000000474 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 03:53:59.544 -07 000000012 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 03:53:59.554 -07 000000611 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:53:59.554 -07 000000512 INF: FPGA: Recv ZDACR 37897
17-03-18 03:53:59.564 -07 000000611 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 03:53:59.564 -07 000000611 INF: Z Motor: MoveAbsStepped took 54 ms (did NOT wait for settling yet))
17-03-18 03:53:59.574 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 118, FrontChillerTemperature: 4.001704,
17-03-18 03:53:59.714 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 398 ms.
17-03-18 03:53:59.714 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 03:53:59.714 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:53:59.714 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 2620985504, 0x0, 391868352) end. Duration was 394 ms.
17-03-18 03:53:59.714 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 03:53:59.714 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:53:59.714 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 03:53:59.714 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 03:53:59.714 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-18 03:53:59.724 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-18 03:53:59.734 -07 000000618 INF: FPGA: Recv FOCMRRFOC
17-03-18 03:53:59.734 -07 000000474 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 222 ms overall
17-03-18 03:53:59.914 -07 000000591 INF: FPGA: Recv YMVTILE
17-03-18 03:53:59.914 -07 000000012 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 392 ms overall
17-03-18 03:53:59.964 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:53:59.974 -07 000000590 INF: FPGA: Recv YRDPOS 148169
17-03-18 03:53:59.974 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 03:53:59.974 -07 000000012 INF: Y Motor: Encoder = 148169 = motor step 115757.0 = 72.3481 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:53:59.974 -07 000000012 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-18 03:53:59.974 -07 000000012 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 393 ms, distance = 0.845 mm, average velocity = 2.150 mm/sec
17-03-18 03:54:00.924 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:54:00.924 -07 000000625 INF: FPGA: Recv YRDPOS 148170
17-03-18 03:54:00.934 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:54:00.934 -07 000000012 INF: Y Motor: Encoder = 148170 = motor step 115757.8 = 72.3486 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:54:00.964 -07 000000012 INF: Y Motor: After move to 72.362610, error = -0.013977, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 03:54:00.964 -07 000000012 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 03:54:00.964 -07 000000012 INF: Y Motor: Moved to 72.3486 after 1454 ms (table move)
17-03-18 03:54:00.964 -07 000000462 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173481 mm (DAC = 37897)
17-03-18 03:54:00.964 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:00.964 -07 000000625 INF: FPGA: Recv ZSGSRD 36298
17-03-18 03:54:00.974 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 03:54:00.974 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:00.974 -07 000000625 INF: FPGA: Recv ZSGSRD 36294
17-03-18 03:54:00.984 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:00.984 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:00.984 -07 000000012 INF: FPGA: Recv ZSGSRD 36300
17-03-18 03:54:00.994 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:00.994 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:00.994 -07 000000012 INF: FPGA: Recv ZSGSRD 36297
17-03-18 03:54:01.004 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:01.004 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:01.004 -07 000000502 INF: FPGA: Recv ZSGSRD 36290
17-03-18 03:54:01.014 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:01.014 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:01.014 -07 000000501 INF: FPGA: Recv ZSGSRD 36295
17-03-18 03:54:01.024 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:01.024 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:01.024 -07 000000501 INF: FPGA: Recv ZSGSRD 36297
17-03-18 03:54:01.034 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:01.034 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:01.034 -07 000000625 INF: FPGA: Recv ZSGSRD 36295
17-03-18 03:54:01.044 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 03:54:01.044 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:01.044 -07 000000625 INF: FPGA: Recv ZSGSRD 36295
17-03-18 03:54:01.054 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:01.054 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:01.054 -07 000000625 INF: FPGA: Recv ZSGSRD 36301
17-03-18 03:54:01.064 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:01.064 -07 000000462 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:54:01.064 -07 000000501 INF: FPGA: Recv ZPIEZORD 32299
17-03-18 03:54:01.074 -07 000000462 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:01.074 -07 000000462 INF: Z Motor: Piezo is near 49.0 V (nominally 0 to 100 V), expect near 57.8 V, since DAC is at 5.783 V. Piezo Error = -8.8 V.
17-03-18 03:54:01.074 -07 000000462 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.5 um, Read 10 ADC samples: Avg = 36296 (-172.6 uncal um), Error = 0.9 uncal um, Median = 36296 (-172.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 36290 (-172.6 uncal um), Max = 36301 (-172.6 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 03:54:01.074 -07 000000462 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36296, posNoise = 5, negNoise = 6
17-03-18 03:54:01.074 -07 000000462 INF: Z Motor: After move to -0.173481, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:54:01.074 -07 000000462 INF: Z Motor: Settle wait time = 1458 ms, measure time = 106 ms (allowed 150 ms), total time = 1564 ms
17-03-18 03:54:01.074 -07 000000462 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-18 03:54:01.124 -07 000000462 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1616 ms
17-03-18 03:54:01.124 -07 000000462 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 03:54:01.124 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:54:01.124 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:54:01.124 -07 000000012 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:54:01.124 -07 000000591 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:54:01.124 -07 000000590 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 03:54:01.124 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:54:01.124 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 03:54:01.124 -07 000000590 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 03:54:01.124 -07 000000590 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 03:54:01.134 -07 000000590 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 03:54:01.144 -07 000000590 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 03:54:01.144 -07 000000590 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-18 03:54:01.144 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 03:54:01.194 -07 000000501 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 03:54:01.494 -07 000000462 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 03:54:01.494 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 03:54:01.494 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 03:54:01.494 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 618216056, 0x0, 559484976) start.
17-03-18 03:54:01.534 -07 000000012 INF: FPGA: Recv @CAMSNAP 380
17-03-18 03:54:01.534 -07 000000625 INF: FPGA: Recv CAMSNAP
17-03-18 03:54:01.534 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 381 ms to get response, and 384 ms overall
17-03-18 03:54:01.624 -07 000000590 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 03:54:01.624 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 618216056, 0x0, 559484976) end. Duration was 127 ms.
17-03-18 03:54:01.624 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:54:01.624 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 03:54:01.624 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 130 ms.
17-03-18 03:54:01.624 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 117. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1690, R2=1759, Total=3449. Warn if over 250 bubbles per interval.
17-03-18 03:54:01.634 -07 000000618 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 03:54:01.634 -07 000000591 INF: Autofocus start
17-03-18 03:54:01.634 -07 000000591 INF: MeasureProfile start
17-03-18 03:54:01.634 -07 000000012 INF: FPGA: Recv FOCMRRCUR 
17-03-18 03:54:01.644 -07 000000618 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 03:54:01.644 -07 000000618 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 03:54:01.644 -07 000000591 INF: MeasureProfile done
17-03-18 03:54:01.644 -07 000000591 INF: X=0  Z correction [um]=-0.0713522
17-03-18 03:54:01.644 -07 000000591 INF: Autofocus finished
17-03-18 03:54:01.844 -07 000000512 INF: FPGA: Recv FOCMRRIMG
17-03-18 03:54:01.844 -07 000000618 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 03:54:01.844 -07 000000610 INF: ------------ Scan Snapping tile 16 at Y-position 72.3486328125, Z-position -0.173496555908491. ----------
17-03-18 03:54:01.844 -07 000000610 INF: Cycle	118	Tile	16	Exposure Settings		A	412	G	198	T	198	C	412
17-03-18 03:54:01.854 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36394, sync = True, waitForSettling = True)
17-03-18 03:54:01.854 -07 000000610 INF: Z Motor: Moving to -0.166601 mm, started at -0.173497 mm, distance = 6.90 um
17-03-18 03:54:01.854 -07 000000610 INF: FPGA: Xmit ZDACW 36394\n [Z Motor]
17-03-18 03:54:01.854 -07 000000474 INF: FPGA: Recv ZDACW
17-03-18 03:54:01.864 -07 000000610 INF: FPGA: 'ZDACW 36394' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:01.864 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:54:01.864 -07 000000447 INF: FPGA: Recv ZDACR 36394
17-03-18 03:54:01.874 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:01.874 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 03:54:02.024 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:02.024 -07 000000462 INF: FPGA: Recv ZSGSRD 35224
17-03-18 03:54:02.034 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:54:02.034 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:02.034 -07 000000618 INF: FPGA: Recv ZSGSRD 35226
17-03-18 03:54:02.044 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:02.044 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:02.044 -07 000000625 INF: FPGA: Recv ZSGSRD 35221
17-03-18 03:54:02.054 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:02.054 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:02.054 -07 000000447 INF: FPGA: Recv ZSGSRD 35223
17-03-18 03:54:02.064 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:02.064 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:02.064 -07 000000625 INF: FPGA: Recv ZSGSRD 35228
17-03-18 03:54:02.074 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:02.074 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:02.074 -07 000000618 INF: FPGA: Recv ZSGSRD 35225
17-03-18 03:54:02.084 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:02.084 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:02.084 -07 000000462 INF: FPGA: Recv ZSGSRD 35224
17-03-18 03:54:02.094 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:02.094 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:02.094 -07 000000447 INF: FPGA: Recv ZSGSRD 35227
17-03-18 03:54:02.104 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:02.104 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:02.104 -07 000000462 INF: FPGA: Recv ZSGSRD 35224
17-03-18 03:54:02.114 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:02.114 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:02.114 -07 000000447 INF: FPGA: Recv ZSGSRD 35226
17-03-18 03:54:02.124 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:02.124 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:54:02.124 -07 000000462 INF: FPGA: Recv ZPIEZORD 30895
17-03-18 03:54:02.134 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:02.134 -07 000000610 INF: Z Motor: Piezo is near 46.0 V (nominally 0 to 100 V), expect near 55.5 V, since DAC is at 5.553 V. Piezo Error = -9.5 V.
17-03-18 03:54:02.134 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.6 um, Read 10 ADC samples: Avg = 35225 (-165.7 uncal um), Error = 0.9 uncal um, Median = 35224 (-165.7 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 35221 (-165.7 uncal um), Max = 35228 (-165.8 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 03:54:02.134 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35225, posNoise = 3, negNoise = 4
17-03-18 03:54:02.134 -07 000000610 INF: Z Motor: After move to -0.166601, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:54:02.134 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 03:54:02.134 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:54:02.134 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:54:02.134 -07 000000590 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:54:02.134 -07 000000012 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:54:02.134 -07 000000625 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 03:54:02.134 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:54:02.134 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 03:54:02.134 -07 000000625 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 03:54:02.134 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 03:54:02.134 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 03:54:02.134 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 03:54:02.134 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 03:54:02.134 -07 000000625 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 03:54:02.134 -07 000000625 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 03:54:02.144 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 03:54:02.144 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 03:54:02.144 -07 000000625 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 03:54:02.144 -07 000000625 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 03:54:02.154 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 03:54:02.154 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 03:54:02.154 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 412 412 198 198 36570 150\n [Camera]
17-03-18 03:54:02.354 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 03:54:02.764 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 604
17-03-18 03:54:02.764 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 604
17-03-18 03:54:02.764 -07 000000611 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:54:02.764 -07 000000611 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:54:02.764 -07 000000611 INF: Camera: sBCa_ReadImage(785074288, 2162365984, 0x0, 391868352) start.
17-03-18 03:54:02.764 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 604
17-03-18 03:54:02.764 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 604
17-03-18 03:54:02.764 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:54:02.764 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:54:02.764 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 2197788248, 0x0, 418435064) start.
17-03-18 03:54:02.954 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36570 797
17-03-18 03:54:03.104 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning grn on 948
17-03-18 03:54:03.154 -07 000000611 INF: Camera: sBCa_ReadImage(785074288, 2162365984, 0x0, 391868352) end. Duration was 385 ms.
17-03-18 03:54:03.154 -07 000000611 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-18 03:54:03.154 -07 000000611 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:54:03.154 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 2197788248, 0x0, 418435064) end. Duration was 384 ms.
17-03-18 03:54:03.154 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-18 03:54:03.154 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:54:03.154 -07 000000611 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 03:54:03.154 -07 000000611 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-18 03:54:03.154 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 03:54:03.164 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-18 03:54:03.304 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1148
17-03-18 03:54:03.304 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1148
17-03-18 03:54:03.304 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:54:03.304 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:54:03.304 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 2233210512, 0x0, 391868352) start.
17-03-18 03:54:03.314 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1149
17-03-18 03:54:03.314 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1149
17-03-18 03:54:03.314 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:54:03.314 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:54:03.314 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 03:54:03.494 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP 1337
17-03-18 03:54:03.494 -07 000000590 INF: FPGA: Recv CAMDBLSNAP
17-03-18 03:54:03.494 -07 000000610 INF: FPGA: 'CAMDBLSNAP 412 412 198 198 36570 150' command took 2 ms to send, 1336 ms to get response, and 1344 ms overall
17-03-18 03:54:03.494 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 03:54:03.494 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 17 at Y-position 72.3486328125, Z-Position -0.166616224704665. ------
17-03-18 03:54:03.504 -07 000000474 INF: Y Motor: MoveYZ optimized starting. Moving Y to 73.1926 mm, moving Z to -0.17311 mm
17-03-18 03:54:03.504 -07 000000474 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 03:54:03.504 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 03:54:03.504 -07 000000618 INF: Y Motor: Entering MoveAbsStepped (target = 117108 steps, sync = True, waitForSettling = True)
17-03-18 03:54:03.504 -07 000000618 INF: Y Motor: Moving to 73.1926 mm, started at 72.3486 mm, delta = 0.8440 mm
17-03-18 03:54:03.504 -07 000000611 INF: Z Motor: Entering MoveAbsStepped (DAC = 37815, sync = True, waitForSettling = False)
17-03-18 03:54:03.504 -07 000000611 INF: Z Motor: Moving to -0.173106 mm, started at -0.166616 mm, distance = -6.49 um
17-03-18 03:54:03.504 -07 000000590 INF: FPGA: Recv FOCMRRCUR 
17-03-18 03:54:03.514 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 03:54:03.514 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:54:03.514 -07 000000501 INF: FPGA: Recv YRDPOS 148170
17-03-18 03:54:03.524 -07 000000611 INF: FPGA: Xmit ZDACW 37815\n [Z Motor]
17-03-18 03:54:03.524 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-18 03:54:03.524 -07 000000618 INF: Y Motor: Encoder = 148170 = motor step 115757.8 = 72.3486 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:54:03.524 -07 000000618 INF: Y Motor: Last commanded position = 72.3626 mm (115780.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 03:54:03.524 -07 000000618 INF: Y Motor: Moving 1350 steps-30
17-03-18 03:54:03.524 -07 000000501 INF: FPGA: Recv ZDACW
17-03-18 03:54:03.534 -07 000000512 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 03:54:03.534 -07 000000611 INF: FPGA: 'ZDACW 37815' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-18 03:54:03.544 -07 000000618 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 03:54:03.554 -07 000000611 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:54:03.554 -07 000000625 INF: FPGA: Recv ZDACR 37815
17-03-18 03:54:03.564 -07 000000611 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 03:54:03.564 -07 000000611 INF: Z Motor: MoveAbsStepped took 54 ms (did NOT wait for settling yet))
17-03-18 03:54:03.694 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 2233210512, 0x0, 391868352) end. Duration was 380 ms.
17-03-18 03:54:03.694 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-18 03:54:03.694 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:54:03.694 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 380 ms.
17-03-18 03:54:03.694 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-18 03:54:03.694 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:54:03.694 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:54:03.694 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-18 03:54:03.694 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-18 03:54:03.704 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-18 03:54:03.734 -07 000000501 INF: FPGA: Recv FOCMRRFOC
17-03-18 03:54:03.734 -07 000000512 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 03:54:03.914 -07 000000502 INF: FPGA: Recv YMVTILE
17-03-18 03:54:03.914 -07 000000618 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 369 ms to get response, and 397 ms overall
17-03-18 03:54:03.974 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:54:03.974 -07 000000590 INF: FPGA: Recv YRDPOS 149862
17-03-18 03:54:03.984 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:03.984 -07 000000618 INF: Y Motor: Encoder = 149862 = motor step 117079.7 = 73.1748 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:54:03.984 -07 000000618 INF: Y Motor: Position error before settling (table move) = -36 encoder counts (-0.018 mm)
17-03-18 03:54:03.984 -07 000000618 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.844 mm, average velocity = 2.121 mm/sec
17-03-18 03:54:04.934 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:54:04.934 -07 000000502 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 118, FrontChillerTemperature: 3.985358,
17-03-18 03:54:04.934 -07 000000502 INF: FPGA: Recv YRDPOS 149862
17-03-18 03:54:04.944 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:04.944 -07 000000618 INF: Y Motor: Encoder = 149862 = motor step 117079.7 = 73.1748 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:54:04.974 -07 000000618 INF: Y Motor: After move to 73.192604, error = -0.017799, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 03:54:04.974 -07 000000618 INF: Y Motor: Position error after settling (table move) = -36 encoder counts (-0.018 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 03:54:04.974 -07 000000618 INF: Y Motor: Moved to 73.1748 after 1469 ms (table move)
17-03-18 03:54:04.974 -07 000000474 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173106 mm (DAC = 37815)
17-03-18 03:54:04.984 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:04.984 -07 000000618 INF: FPGA: Recv ZSGSRD 36238
17-03-18 03:54:04.994 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-18 03:54:04.994 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:04.994 -07 000000618 INF: FPGA: Recv ZSGSRD 36239
17-03-18 03:54:05.004 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:05.004 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:05.004 -07 000000618 INF: FPGA: Recv ZSGSRD 36234
17-03-18 03:54:05.014 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:05.014 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:05.014 -07 000000618 INF: FPGA: Recv ZSGSRD 36239
17-03-18 03:54:05.024 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:05.024 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:05.024 -07 000000618 INF: FPGA: Recv ZSGSRD 36241
17-03-18 03:54:05.034 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:05.034 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:05.034 -07 000000618 INF: FPGA: Recv ZSGSRD 36234
17-03-18 03:54:05.044 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:05.044 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:05.044 -07 000000462 INF: FPGA: Recv ZSGSRD 36239
17-03-18 03:54:05.054 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:05.054 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:05.054 -07 000000462 INF: FPGA: Recv ZSGSRD 36240
17-03-18 03:54:05.064 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:05.064 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:05.064 -07 000000462 INF: FPGA: Recv ZSGSRD 36240
17-03-18 03:54:05.074 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:05.074 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:05.074 -07 000000502 INF: FPGA: Recv ZSGSRD 36236
17-03-18 03:54:05.084 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:05.084 -07 000000474 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:54:05.084 -07 000000502 INF: FPGA: Recv ZPIEZORD 32249
17-03-18 03:54:05.094 -07 000000474 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:05.094 -07 000000474 INF: Z Motor: Piezo is near 48.9 V (nominally 0 to 100 V), expect near 57.7 V, since DAC is at 5.770 V. Piezo Error = -8.8 V.
17-03-18 03:54:05.094 -07 000000474 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.1 um, Read 10 ADC samples: Avg = 36238 (-172.2 uncal um), Error = 0.9 uncal um, Median = 36239 (-172.2 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 36234 (-172.2 uncal um), Max = 36241 (-172.3 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 03:54:05.094 -07 000000474 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36238, posNoise = 3, negNoise = 4
17-03-18 03:54:05.094 -07 000000474 INF: Z Motor: After move to -0.173106, error = -0.000018, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:54:05.094 -07 000000474 INF: Z Motor: Settle wait time = 1472 ms, measure time = 113 ms (allowed 150 ms), total time = 1585 ms
17-03-18 03:54:05.094 -07 000000474 INF: Z Motor: Waiting extra 37 ms after reading position to reach expected total of 150 ms
17-03-18 03:54:05.134 -07 000000474 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1627 ms
17-03-18 03:54:05.134 -07 000000474 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 03:54:05.134 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:54:05.134 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:54:05.134 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:54:05.134 -07 000000590 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:54:05.134 -07 000000625 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 03:54:05.134 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:54:05.134 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 03:54:05.134 -07 000000625 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 03:54:05.144 -07 000000625 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 03:54:05.144 -07 000000625 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 03:54:05.154 -07 000000625 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 9 ms.
17-03-18 03:54:05.154 -07 000000625 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 14 ms.
17-03-18 03:54:05.154 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 03:54:05.194 -07 000000611 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 03:54:05.494 -07 000000590 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 03:54:05.494 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 03:54:05.494 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 03:54:05.494 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2268632776, 0x0, 559484976) start.
17-03-18 03:54:05.534 -07 000000512 INF: FPGA: Recv @CAMSNAP 380
17-03-18 03:54:05.534 -07 000000611 INF: FPGA: Recv CAMSNAP
17-03-18 03:54:05.534 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 378 ms to get response, and 384 ms overall
17-03-18 03:54:05.624 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2268632776, 0x0, 559484976) end. Duration was 121 ms.
17-03-18 03:54:05.624 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:54:05.624 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 03:54:05.624 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 123 ms.
17-03-18 03:54:05.634 -07 000000501 INF: Autofocus start
17-03-18 03:54:05.634 -07 000000501 INF: MeasureProfile start
17-03-18 03:54:05.634 -07 000000012 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 03:54:05.634 -07 000000625 INF: FPGA: Recv FOCMRRCUR 
17-03-18 03:54:05.644 -07 000000012 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 03:54:05.644 -07 000000012 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 03:54:05.644 -07 000000501 INF: MeasureProfile done
17-03-18 03:54:05.644 -07 000000501 INF: X=32  Z correction [um]=0.09220707
17-03-18 03:54:05.644 -07 000000501 INF: Autofocus finished
17-03-18 03:54:05.844 -07 000000611 INF: FPGA: Recv FOCMRRIMG
17-03-18 03:54:05.844 -07 000000012 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 03:54:05.844 -07 000000610 INF: ------------ Scan Snapping tile 17 at Y-position 73.1748046875, Z-position -0.173123951604269. ----------
17-03-18 03:54:05.844 -07 000000610 INF: Cycle	118	Tile	17	Exposure Settings		A	412	G	198	T	198	C	412
17-03-18 03:54:05.854 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36348, sync = True, waitForSettling = True)
17-03-18 03:54:05.854 -07 000000610 INF: Z Motor: Moving to -0.166390 mm, started at -0.173124 mm, distance = 6.73 um
17-03-18 03:54:05.854 -07 000000610 INF: FPGA: Xmit ZDACW 36348\n [Z Motor]
17-03-18 03:54:05.854 -07 000000591 INF: FPGA: Recv ZDACW
17-03-18 03:54:05.864 -07 000000610 INF: FPGA: 'ZDACW 36348' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:05.864 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:54:05.864 -07 000000618 INF: FPGA: Recv ZDACR 36348
17-03-18 03:54:05.874 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:05.874 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 03:54:06.024 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:06.024 -07 000000618 INF: FPGA: Recv ZSGSRD 35191
17-03-18 03:54:06.034 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:54:06.034 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:06.034 -07 000000447 INF: FPGA: Recv ZSGSRD 35192
17-03-18 03:54:06.044 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:06.044 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:06.044 -07 000000618 INF: FPGA: Recv ZSGSRD 35191
17-03-18 03:54:06.054 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:06.054 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:06.054 -07 000000474 INF: FPGA: Recv ZSGSRD 35186
17-03-18 03:54:06.064 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:06.064 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:06.064 -07 000000618 INF: FPGA: Recv ZSGSRD 35193
17-03-18 03:54:06.074 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:06.074 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:06.074 -07 000000447 INF: FPGA: Recv ZSGSRD 35195
17-03-18 03:54:06.084 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:06.084 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:06.084 -07 000000462 INF: FPGA: Recv ZSGSRD 35191
17-03-18 03:54:06.094 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:06.094 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:06.094 -07 000000447 INF: FPGA: Recv ZSGSRD 35192
17-03-18 03:54:06.104 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:06.104 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:06.104 -07 000000462 INF: FPGA: Recv ZSGSRD 35190
17-03-18 03:54:06.114 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:06.114 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:06.114 -07 000000501 INF: FPGA: Recv ZSGSRD 35195
17-03-18 03:54:06.124 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:06.124 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:54:06.124 -07 000000462 INF: FPGA: Recv ZPIEZORD 30891
17-03-18 03:54:06.134 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:06.134 -07 000000610 INF: Z Motor: Piezo is near 46.0 V (nominally 0 to 100 V), expect near 55.5 V, since DAC is at 5.546 V. Piezo Error = -9.5 V.
17-03-18 03:54:06.134 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.4 um, Read 10 ADC samples: Avg = 35192 (-165.5 uncal um), Error = 0.9 uncal um, Median = 35192 (-165.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35186 (-165.5 uncal um), Max = 35195 (-165.6 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 03:54:06.134 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35192, posNoise = 3, negNoise = 6
17-03-18 03:54:06.134 -07 000000610 INF: Z Motor: After move to -0.166390, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:54:06.134 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 03:54:06.134 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:54:06.134 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:54:06.134 -07 000000590 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:54:06.134 -07 000000474 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:54:06.134 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 03:54:06.134 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:54:06.134 -07 000000625 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 03:54:06.134 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 03:54:06.134 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 03:54:06.134 -07 000000625 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 03:54:06.134 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 03:54:06.134 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 03:54:06.134 -07 000000625 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 03:54:06.134 -07 000000625 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 03:54:06.144 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 03:54:06.144 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 03:54:06.144 -07 000000625 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 03:54:06.144 -07 000000625 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 03:54:06.144 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 03:54:06.144 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 03:54:06.154 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 412 412 198 198 36525 150\n [Camera]
17-03-18 03:54:06.354 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 03:54:06.624 -07 000000474 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 03:54:06.624 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 117. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1690, R2=1759, Total=3449. Warn if over 250 bubbles per interval.
17-03-18 03:54:06.764 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 604
17-03-18 03:54:06.764 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 604
17-03-18 03:54:06.764 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:54:06.764 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:54:06.764 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) start.
17-03-18 03:54:06.764 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 604
17-03-18 03:54:06.764 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 604
17-03-18 03:54:06.764 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:54:06.764 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:54:06.764 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) start.
17-03-18 03:54:06.954 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36525 797
17-03-18 03:54:07.104 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning grn on 947
17-03-18 03:54:07.144 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) end. Duration was 377 ms.
17-03-18 03:54:07.144 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-18 03:54:07.144 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:54:07.144 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) end. Duration was 375 ms.
17-03-18 03:54:07.144 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-18 03:54:07.144 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:54:07.144 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 03:54:07.144 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-18 03:54:07.144 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 03:54:07.154 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-18 03:54:07.304 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1145
17-03-18 03:54:07.304 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1145
17-03-18 03:54:07.304 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:54:07.304 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:54:07.304 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 03:54:07.304 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1145
17-03-18 03:54:07.304 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1145
17-03-18 03:54:07.314 -07 000000474 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:54:07.314 -07 000000474 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:54:07.314 -07 000000474 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-18 03:54:07.494 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP 1337
17-03-18 03:54:07.494 -07 000000502 INF: FPGA: Recv CAMDBLSNAP
17-03-18 03:54:07.494 -07 000000610 INF: FPGA: 'CAMDBLSNAP 412 412 198 198 36525 150' command took 2 ms to send, 1336 ms to get response, and 1345 ms overall
17-03-18 03:54:07.494 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 03:54:07.494 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 18 at Y-position 73.1748046875, Z-Position -0.166404225703987. ------
17-03-18 03:54:07.504 -07 000000618 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.0226 mm, moving Z to -0.17234 mm
17-03-18 03:54:07.504 -07 000000618 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 03:54:07.504 -07 000000591 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 03:54:07.504 -07 000000625 INF: Y Motor: Entering MoveAbsStepped (target = 118436 steps, sync = True, waitForSettling = True)
17-03-18 03:54:07.504 -07 000000625 INF: Y Motor: Moving to 74.0226 mm, started at 73.1748 mm, delta = 0.8478 mm
17-03-18 03:54:07.504 -07 000000462 INF: Z Motor: Entering MoveAbsStepped (DAC = 37648, sync = True, waitForSettling = False)
17-03-18 03:54:07.504 -07 000000462 INF: Z Motor: Moving to -0.172341 mm, started at -0.166404 mm, distance = -5.94 um
17-03-18 03:54:07.504 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-18 03:54:07.514 -07 000000591 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 03:54:07.514 -07 000000625 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:54:07.514 -07 000000447 INF: FPGA: Recv YRDPOS 149863
17-03-18 03:54:07.524 -07 000000462 INF: FPGA: Xmit ZDACW 37648\n [Z Motor]
17-03-18 03:54:07.524 -07 000000625 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-18 03:54:07.524 -07 000000625 INF: Y Motor: Encoder = 149863 = motor step 117080.5 = 73.1753 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:54:07.524 -07 000000501 INF: FPGA: Recv ZDACW
17-03-18 03:54:07.524 -07 000000625 INF: Y Motor: Last commanded position = 73.1926 mm (117108.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 03:54:07.524 -07 000000625 INF: Y Motor: Moving 1356 steps-36
17-03-18 03:54:07.534 -07 000000591 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 03:54:07.534 -07 000000462 INF: FPGA: 'ZDACW 37648' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-18 03:54:07.544 -07 000000625 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 03:54:07.554 -07 000000462 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:54:07.554 -07 000000590 INF: FPGA: Recv ZDACR 37648
17-03-18 03:54:07.564 -07 000000462 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 03:54:07.564 -07 000000462 INF: Z Motor: MoveAbsStepped took 55 ms (did NOT wait for settling yet))
17-03-18 03:54:07.704 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 395 ms.
17-03-18 03:54:07.704 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 03:54:07.704 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:54:07.704 -07 000000474 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 393 ms.
17-03-18 03:54:07.704 -07 000000474 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-18 03:54:07.704 -07 000000474 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:54:07.704 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:54:07.714 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 03:54:07.714 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 03:54:07.714 -07 000000474 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-18 03:54:07.734 -07 000000512 INF: FPGA: Recv FOCMRRFOC
17-03-18 03:54:07.734 -07 000000591 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 03:54:07.914 -07 000000502 INF: FPGA: Recv YMVTILE
17-03-18 03:54:07.924 -07 000000625 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 370 ms to get response, and 393 ms overall
17-03-18 03:54:07.954 -07 000000625 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:54:07.964 -07 000000474 INF: FPGA: Recv YRDPOS 151566
17-03-18 03:54:07.974 -07 000000625 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:54:07.974 -07 000000625 INF: Y Motor: Encoder = 151566 = motor step 118410.9 = 74.0068 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:54:07.974 -07 000000625 INF: Y Motor: Position error before settling (table move) = -32 encoder counts (-0.016 mm)
17-03-18 03:54:07.974 -07 000000625 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 393 ms, distance = 0.848 mm, average velocity = 2.157 mm/sec
17-03-18 03:54:08.924 -07 000000625 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:54:08.924 -07 000000611 INF: FPGA: Recv YRDPOS 151567
17-03-18 03:54:08.934 -07 000000625 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:54:08.934 -07 000000625 INF: Y Motor: Encoder = 151567 = motor step 118411.7 = 74.0073 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:54:08.954 -07 000000625 INF: Y Motor: After move to 74.022606, error = -0.015282, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 03:54:08.954 -07 000000625 INF: Y Motor: Position error after settling (table move) = -31 encoder counts (-0.015 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 03:54:08.954 -07 000000625 INF: Y Motor: Moved to 74.0073 after 1448 ms (table move)
17-03-18 03:54:08.954 -07 000000618 INF: Z Motor: EndOfMoveAbsStepped: target = -0.172341 mm (DAC = 37648)
17-03-18 03:54:08.954 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:08.954 -07 000000625 INF: FPGA: Recv ZSGSRD 36116
17-03-18 03:54:08.964 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 03:54:08.964 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:08.964 -07 000000625 INF: FPGA: Recv ZSGSRD 36122
17-03-18 03:54:08.974 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:08.974 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:08.974 -07 000000474 INF: FPGA: Recv ZSGSRD 36124
17-03-18 03:54:08.984 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:08.984 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:08.984 -07 000000474 INF: FPGA: Recv ZSGSRD 36125
17-03-18 03:54:08.994 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:08.994 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:08.994 -07 000000591 INF: FPGA: Recv ZSGSRD 36120
17-03-18 03:54:09.004 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:09.004 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:09.004 -07 000000591 INF: FPGA: Recv ZSGSRD 36117
17-03-18 03:54:09.014 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:09.014 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:09.014 -07 000000591 INF: FPGA: Recv ZSGSRD 36112
17-03-18 03:54:09.024 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:09.024 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:09.024 -07 000000591 INF: FPGA: Recv ZSGSRD 36117
17-03-18 03:54:09.034 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:09.034 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:09.034 -07 000000591 INF: FPGA: Recv ZSGSRD 36117
17-03-18 03:54:09.044 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:09.044 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:09.044 -07 000000591 INF: FPGA: Recv ZSGSRD 36121
17-03-18 03:54:09.054 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:09.054 -07 000000618 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:54:09.054 -07 000000591 INF: FPGA: Recv ZPIEZORD 32146
17-03-18 03:54:09.064 -07 000000618 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:09.064 -07 000000618 INF: Z Motor: Piezo is near 48.7 V (nominally 0 to 100 V), expect near 57.4 V, since DAC is at 5.745 V. Piezo Error = -8.8 V.
17-03-18 03:54:09.064 -07 000000618 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.3 um, Read 10 ADC samples: Avg = 36119 (-171.5 uncal um), Error = 0.9 uncal um, Median = 36118 (-171.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 36112 (-171.4 uncal um), Max = 36125 (-171.5 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 03:54:09.064 -07 000000618 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36119, posNoise = 6, negNoise = 7
17-03-18 03:54:09.064 -07 000000618 INF: Z Motor: After move to -0.172341, error = -0.000018, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:54:09.064 -07 000000618 INF: Z Motor: Settle wait time = 1451 ms, measure time = 104 ms (allowed 150 ms), total time = 1555 ms
17-03-18 03:54:09.064 -07 000000618 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-18 03:54:09.114 -07 000000618 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1607 ms
17-03-18 03:54:09.114 -07 000000618 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 03:54:09.114 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:54:09.114 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:54:09.114 -07 000000590 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:54:09.114 -07 000000591 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:54:09.114 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 03:54:09.114 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:54:09.124 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 03:54:09.124 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 03:54:09.124 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 03:54:09.124 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 03:54:09.134 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 03:54:09.134 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 03:54:09.134 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 03:54:09.184 -07 000000501 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 03:54:09.484 -07 000000512 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 03:54:09.484 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 03:54:09.484 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 03:54:09.484 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2673282832, 0x0, 559484976) start.
17-03-18 03:54:09.524 -07 000000618 INF: FPGA: Recv @CAMSNAP 381
17-03-18 03:54:09.524 -07 000000590 INF: FPGA: Recv CAMSNAP
17-03-18 03:54:09.524 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 382 ms to get response, and 386 ms overall
17-03-18 03:54:09.604 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2673282832, 0x0, 559484976) end. Duration was 119 ms.
17-03-18 03:54:09.604 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:54:09.604 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-18 03:54:09.604 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 122 ms.
17-03-18 03:54:09.624 -07 000000012 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 03:54:09.624 -07 000000462 INF: Autofocus start
17-03-18 03:54:09.624 -07 000000462 INF: MeasureProfile start
17-03-18 03:54:09.634 -07 000000512 INF: FPGA: Recv FOCMRRCUR 
17-03-18 03:54:09.634 -07 000000012 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 03:54:09.634 -07 000000012 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 03:54:09.644 -07 000000462 INF: MeasureProfile done
17-03-18 03:54:09.644 -07 000000462 INF: X=16  Z correction [um]=0.01042744
17-03-18 03:54:09.644 -07 000000462 INF: Autofocus finished
17-03-18 03:54:09.834 -07 000000501 INF: FPGA: Recv FOCMRRIMG
17-03-18 03:54:09.834 -07 000000012 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 202 ms overall
17-03-18 03:54:09.834 -07 000000610 INF: ------------ Scan Snapping tile 18 at Y-position 74.00732421875, Z-position -0.172359470359399. ----------
17-03-18 03:54:09.834 -07 000000610 INF: Cycle	118	Tile	18	Exposure Settings		A	412	G	198	T	198	C	412
17-03-18 03:54:09.844 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36163, sync = True, waitForSettling = True)
17-03-18 03:54:09.844 -07 000000610 INF: Z Motor: Moving to -0.165544 mm, started at -0.172359 mm, distance = 6.82 um
17-03-18 03:54:09.844 -07 000000610 INF: FPGA: Xmit ZDACW 36163\n [Z Motor]
17-03-18 03:54:09.844 -07 000000591 INF: FPGA: Recv ZDACW
17-03-18 03:54:09.854 -07 000000610 INF: FPGA: 'ZDACW 36163' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 03:54:09.854 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:54:09.854 -07 000000625 INF: FPGA: Recv ZDACR 36163
17-03-18 03:54:09.864 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:09.864 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 03:54:10.014 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:10.014 -07 000000590 INF: FPGA: Recv ZSGSRD 35061
17-03-18 03:54:10.024 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:54:10.044 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:10.044 -07 000000512 INF: FPGA: Recv ZSGSRD 35058
17-03-18 03:54:10.054 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 03:54:10.054 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:10.054 -07 000000012 INF: FPGA: Recv ZSGSRD 35059
17-03-18 03:54:10.064 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:10.064 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:10.064 -07 000000591 INF: FPGA: Recv ZSGSRD 35065
17-03-18 03:54:10.074 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:10.074 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:10.074 -07 000000012 INF: FPGA: Recv ZSGSRD 35061
17-03-18 03:54:10.084 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:54:10.084 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:10.084 -07 000000591 INF: FPGA: Recv ZSGSRD 35064
17-03-18 03:54:10.094 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:10.094 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:10.094 -07 000000611 INF: FPGA: Recv ZSGSRD 35060
17-03-18 03:54:10.104 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:10.104 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:10.104 -07 000000591 INF: FPGA: Recv ZSGSRD 35063
17-03-18 03:54:10.114 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:10.114 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:10.114 -07 000000512 INF: FPGA: Recv ZSGSRD 35058
17-03-18 03:54:10.124 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:10.124 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:10.124 -07 000000611 INF: FPGA: Recv ZSGSRD 35057
17-03-18 03:54:10.134 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:10.134 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:54:10.134 -07 000000591 INF: FPGA: Recv ZPIEZORD 30702
17-03-18 03:54:10.144 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:10.144 -07 000000610 INF: Z Motor: Piezo is near 45.6 V (nominally 0 to 100 V), expect near 55.2 V, since DAC is at 5.518 V. Piezo Error = -9.6 V.
17-03-18 03:54:10.144 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -165.5 um, Read 10 ADC samples: Avg = 35061 (-164.7 uncal um), Error = 0.8 uncal um, Median = 35060 (-164.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35057 (-164.7 uncal um), Max = 35065 (-164.7 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 03:54:10.144 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35061, posNoise = 4, negNoise = 4
17-03-18 03:54:10.144 -07 000000610 INF: Z Motor: After move to -0.165544, error = -0.000019, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:54:10.144 -07 000000610 INF: Z Motor: MoveAbsStepped took 299 ms)
17-03-18 03:54:10.144 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:54:10.144 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:54:10.144 -07 000000474 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:54:10.144 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 03:54:10.144 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:54:10.144 -07 000000590 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 03:54:10.144 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 03:54:10.144 -07 000000447 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:54:10.144 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 03:54:10.144 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 03:54:10.144 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-18 03:54:10.144 -07 000000590 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 03:54:10.154 -07 000000590 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 03:54:10.154 -07 000000590 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 03:54:10.154 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 5 ms.
17-03-18 03:54:10.154 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 03:54:10.164 -07 000000590 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 03:54:10.164 -07 000000590 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 03:54:10.164 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-18 03:54:10.164 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 17 ms.
17-03-18 03:54:10.164 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 412 412 198 198 36339 150\n [Camera]
17-03-18 03:54:10.304 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 118, FrontChillerTemperature: 3.986717,
17-03-18 03:54:10.364 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 03:54:10.774 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 604
17-03-18 03:54:10.774 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 604
17-03-18 03:54:10.774 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:54:10.774 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:54:10.774 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-18 03:54:10.784 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 604
17-03-18 03:54:10.784 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 604
17-03-18 03:54:10.784 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:54:10.784 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:54:10.784 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-18 03:54:10.974 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36339 797
17-03-18 03:54:11.124 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP turning grn on 950
17-03-18 03:54:11.174 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 394 ms.
17-03-18 03:54:11.174 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-18 03:54:11.174 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:54:11.174 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 392 ms.
17-03-18 03:54:11.174 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-18 03:54:11.174 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:54:11.174 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 03:54:11.174 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 03:54:11.174 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 03:54:11.184 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-18 03:54:11.324 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1145
17-03-18 03:54:11.324 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1145
17-03-18 03:54:11.324 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:54:11.324 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:54:11.324 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) start.
17-03-18 03:54:11.324 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1145
17-03-18 03:54:11.324 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1145
17-03-18 03:54:11.324 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:54:11.324 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:54:11.324 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 2486767776, 0x0, 418435064) start.
17-03-18 03:54:11.514 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP 1338
17-03-18 03:54:11.514 -07 000000625 INF: FPGA: Recv CAMDBLSNAP
17-03-18 03:54:11.514 -07 000000610 INF: FPGA: 'CAMDBLSNAP 412 412 198 198 36339 150' command took 2 ms to send, 1341 ms to get response, and 1345 ms overall
17-03-18 03:54:11.514 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 03:54:11.514 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 19 at Y-position 74.00732421875, Z-Position -0.165562653913416. ------
17-03-18 03:54:11.514 -07 000000501 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.8526 mm, moving Z to -0.17180 mm
17-03-18 03:54:11.514 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 03:54:11.514 -07 000000501 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 03:54:11.514 -07 000000502 INF: Y Motor: Entering MoveAbsStepped (target = 119764 steps, sync = True, waitForSettling = True)
17-03-18 03:54:11.514 -07 000000502 INF: Y Motor: Moving to 74.8526 mm, started at 74.0073 mm, delta = 0.8453 mm
17-03-18 03:54:11.514 -07 000000590 INF: Z Motor: Entering MoveAbsStepped (DAC = 37531, sync = True, waitForSettling = False)
17-03-18 03:54:11.514 -07 000000590 INF: Z Motor: Moving to -0.171806 mm, started at -0.165563 mm, distance = -6.24 um
17-03-18 03:54:11.524 -07 000000590 INF: FPGA: Xmit ZDACW 37531\n [Z Motor]
17-03-18 03:54:11.524 -07 000000611 INF: FPGA: Recv FOCMRRCUR 
17-03-18 03:54:11.524 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 5 ms overall
17-03-18 03:54:11.524 -07 000000625 INF: FPGA: Recv ZDACW
17-03-18 03:54:11.534 -07 000000590 INF: FPGA: 'ZDACW 37531' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:54:11.534 -07 000000512 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 03:54:11.544 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:54:11.544 -07 000000447 INF: FPGA: Recv YRDPOS 151567
17-03-18 03:54:11.554 -07 000000590 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:54:11.554 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 31 ms overall
17-03-18 03:54:11.554 -07 000000502 INF: Y Motor: Encoder = 151567 = motor step 118411.7 = 74.0073 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:54:11.554 -07 000000502 INF: Y Motor: Last commanded position = 74.0226 mm (118436.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 03:54:11.554 -07 000000502 INF: Y Motor: Moving 1352 steps-32
17-03-18 03:54:11.554 -07 000000611 INF: FPGA: Recv ZDACR 37531
17-03-18 03:54:11.564 -07 000000590 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 03:54:11.564 -07 000000590 INF: Z Motor: MoveAbsStepped took 41 ms (did NOT wait for settling yet))
17-03-18 03:54:11.564 -07 000000502 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 03:54:11.624 -07 000000437 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 03:54:11.624 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 117. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1690, R2=1759, Total=3449. Warn if over 250 bubbles per interval.
17-03-18 03:54:11.714 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 2486767776, 0x0, 418435064) end. Duration was 391 ms.
17-03-18 03:54:11.714 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-18 03:54:11.714 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:54:11.714 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) end. Duration was 396 ms.
17-03-18 03:54:11.714 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 03:54:11.714 -07 000000474 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:54:11.724 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:54:11.724 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 03:54:11.724 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 03:54:11.724 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-18 03:54:11.734 -07 000000590 INF: FPGA: Recv FOCMRRFOC
17-03-18 03:54:11.734 -07 000000512 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 208 ms overall
17-03-18 03:54:11.934 -07 000000611 INF: FPGA: Recv YMVTILE
17-03-18 03:54:11.934 -07 000000502 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-18 03:54:11.964 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:54:11.974 -07 000000437 INF: FPGA: Recv YRDPOS 153253
17-03-18 03:54:11.974 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 03:54:11.974 -07 000000502 INF: Y Motor: Encoder = 153253 = motor step 119728.9 = 74.8306 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:54:11.974 -07 000000502 INF: Y Motor: Position error before settling (table move) = -45 encoder counts (-0.022 mm)
17-03-18 03:54:11.974 -07 000000502 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 387 ms, distance = 0.845 mm, average velocity = 2.184 mm/sec
17-03-18 03:54:12.924 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:54:12.924 -07 000000447 INF: FPGA: Recv YRDPOS 153253
17-03-18 03:54:12.934 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:54:12.934 -07 000000502 INF: Y Motor: Encoder = 153253 = motor step 119728.9 = 74.8306 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:54:12.944 -07 000000502 INF: Y Motor: After move to 74.852608, error = -0.022041, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 03:54:12.944 -07 000000502 INF: Y Motor: Position error after settling (table move) = -45 encoder counts (-0.022 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 03:54:12.944 -07 000000502 INF: Y Motor: Moved to 74.8306 after 1431 ms (table move)
17-03-18 03:54:12.954 -07 000000501 INF: Z Motor: EndOfMoveAbsStepped: target = -0.171806 mm (DAC = 37531)
17-03-18 03:54:12.954 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:12.954 -07 000000437 INF: FPGA: Recv ZSGSRD 36038
17-03-18 03:54:12.964 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 03:54:12.964 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:12.964 -07 000000591 INF: FPGA: Recv ZSGSRD 36031
17-03-18 03:54:12.974 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:12.974 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:12.974 -07 000000012 INF: FPGA: Recv ZSGSRD 36034
17-03-18 03:54:12.984 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:12.984 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:12.984 -07 000000611 INF: FPGA: Recv ZSGSRD 36033
17-03-18 03:54:12.994 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:12.994 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:12.994 -07 000000474 INF: FPGA: Recv ZSGSRD 36037
17-03-18 03:54:13.004 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:13.004 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:13.004 -07 000000611 INF: FPGA: Recv ZSGSRD 36041
17-03-18 03:54:13.014 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:13.014 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:13.014 -07 000000608 INF: FPGA: Recv ZSGSRD 36038
17-03-18 03:54:13.024 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:13.024 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:13.024 -07 000000474 INF: FPGA: Recv ZSGSRD 36038
17-03-18 03:54:13.034 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:13.034 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:13.034 -07 000000462 INF: FPGA: Recv ZSGSRD 36030
17-03-18 03:54:13.044 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:13.044 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:13.044 -07 000000611 INF: FPGA: Recv ZSGSRD 36031
17-03-18 03:54:13.054 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:13.054 -07 000000501 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:54:13.054 -07 000000611 INF: FPGA: Recv ZPIEZORD 32009
17-03-18 03:54:13.064 -07 000000501 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:13.064 -07 000000501 INF: Z Motor: Piezo is near 48.4 V (nominally 0 to 100 V), expect near 57.3 V, since DAC is at 5.727 V. Piezo Error = -8.9 V.
17-03-18 03:54:13.064 -07 000000501 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.8 um, Read 10 ADC samples: Avg = 36035 (-170.9 uncal um), Error = 0.9 uncal um, Median = 36036 (-170.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 36030 (-170.9 uncal um), Max = 36041 (-171.0 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 03:54:13.064 -07 000000501 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36035, posNoise = 6, negNoise = 5
17-03-18 03:54:13.064 -07 000000501 INF: Z Motor: After move to -0.171806, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:54:13.064 -07 000000501 INF: Z Motor: Settle wait time = 1434 ms, measure time = 107 ms (allowed 150 ms), total time = 1541 ms
17-03-18 03:54:13.064 -07 000000501 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-18 03:54:13.114 -07 000000501 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1594 ms
17-03-18 03:54:13.114 -07 000000501 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 03:54:13.114 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:54:13.114 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:54:13.114 -07 000000474 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:54:13.114 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:54:13.114 -07 000000437 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 03:54:13.114 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:54:13.114 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 03:54:13.114 -07 000000437 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 03:54:13.124 -07 000000437 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 03:54:13.124 -07 000000437 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 03:54:13.134 -07 000000437 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-18 03:54:13.134 -07 000000437 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-18 03:54:13.134 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 03:54:13.184 -07 000000501 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 03:54:13.484 -07 000000502 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 03:54:13.484 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 03:54:13.484 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 03:54:13.484 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1512312592, 0x0, 559484976) start.
17-03-18 03:54:13.524 -07 000000447 INF: FPGA: Recv @CAMSNAP 381
17-03-18 03:54:13.524 -07 000000462 INF: FPGA: Recv CAMSNAP
17-03-18 03:54:13.524 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 383 ms to get response, and 386 ms overall
17-03-18 03:54:13.604 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1512312592, 0x0, 559484976) end. Duration was 126 ms.
17-03-18 03:54:13.604 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:54:13.614 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-18 03:54:13.614 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 130 ms.
17-03-18 03:54:13.624 -07 000000608 INF: Autofocus start
17-03-18 03:54:13.624 -07 000000608 INF: MeasureProfile start
17-03-18 03:54:13.624 -07 000000590 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 03:54:13.624 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-18 03:54:13.634 -07 000000590 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 03:54:13.634 -07 000000590 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 03:54:13.644 -07 000000608 INF: MeasureProfile done
17-03-18 03:54:13.644 -07 000000608 INF: X=-16  Z correction [um]=-0.1496812
17-03-18 03:54:13.644 -07 000000608 INF: Autofocus finished
17-03-18 03:54:13.834 -07 000000447 INF: FPGA: Recv FOCMRRIMG
17-03-18 03:54:13.834 -07 000000590 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 03:54:13.834 -07 000000610 INF: ------------ Scan Snapping tile 19 at Y-position 74.83056640625, Z-position -0.171819836539491. ----------
17-03-18 03:54:13.834 -07 000000610 INF: Cycle	118	Tile	19	Exposure Settings		A	412	G	198	T	198	C	412
17-03-18 03:54:13.844 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36010, sync = True, waitForSettling = True)
17-03-18 03:54:13.844 -07 000000610 INF: Z Motor: Moving to -0.164843 mm, started at -0.171820 mm, distance = 6.98 um
17-03-18 03:54:13.844 -07 000000610 INF: FPGA: Xmit ZDACW 36010\n [Z Motor]
17-03-18 03:54:13.844 -07 000000474 INF: FPGA: Recv ZDACW
17-03-18 03:54:13.854 -07 000000610 INF: FPGA: 'ZDACW 36010' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:13.854 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:54:13.854 -07 000000502 INF: FPGA: Recv ZDACR 36010
17-03-18 03:54:13.864 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:13.864 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 03:54:14.014 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:14.014 -07 000000437 INF: FPGA: Recv ZSGSRD 34951
17-03-18 03:54:14.024 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:14.024 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:14.024 -07 000000625 INF: FPGA: Recv ZSGSRD 34955
17-03-18 03:54:14.034 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:14.034 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:14.034 -07 000000437 INF: FPGA: Recv ZSGSRD 34951
17-03-18 03:54:14.044 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:14.044 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:14.044 -07 000000590 INF: FPGA: Recv ZSGSRD 34952
17-03-18 03:54:14.054 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:14.054 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:14.054 -07 000000437 INF: FPGA: Recv ZSGSRD 34949
17-03-18 03:54:14.064 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:14.064 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:14.064 -07 000000590 INF: FPGA: Recv ZSGSRD 34953
17-03-18 03:54:14.074 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:14.074 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:14.074 -07 000000625 INF: FPGA: Recv ZSGSRD 34953
17-03-18 03:54:14.084 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:14.084 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:14.084 -07 000000502 INF: FPGA: Recv ZSGSRD 34943
17-03-18 03:54:14.094 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:14.094 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:14.094 -07 000000590 INF: FPGA: Recv ZSGSRD 34950
17-03-18 03:54:14.104 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:14.104 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:14.104 -07 000000437 INF: FPGA: Recv ZSGSRD 34954
17-03-18 03:54:14.114 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:14.114 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:54:14.114 -07 000000625 INF: FPGA: Recv ZPIEZORD 30597
17-03-18 03:54:14.124 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:14.124 -07 000000610 INF: Z Motor: Piezo is near 45.4 V (nominally 0 to 100 V), expect near 54.9 V, since DAC is at 5.495 V. Piezo Error = -9.6 V.
17-03-18 03:54:14.124 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -164.8 um, Read 10 ADC samples: Avg = 34951 (-164.0 uncal um), Error = 0.8 uncal um, Median = 34952 (-164.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 34943 (-163.9 uncal um), Max = 34955 (-164.0 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 03:54:14.124 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 34951, posNoise = 4, negNoise = 8
17-03-18 03:54:14.124 -07 000000610 INF: Z Motor: After move to -0.164843, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:54:14.124 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 03:54:14.124 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:54:14.124 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:54:14.124 -07 000000012 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:54:14.124 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 03:54:14.124 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 03:54:14.124 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:54:14.124 -07 000000608 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 03:54:14.124 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:54:14.124 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 03:54:14.124 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 03:54:14.124 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 03:54:14.124 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 03:54:14.124 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 03:54:14.134 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 03:54:14.134 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 03:54:14.134 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 03:54:14.134 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 03:54:14.134 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 03:54:14.144 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 03:54:14.144 -07 000000608 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 03:54:14.144 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 412 412 198 198 36187 150\n [Camera]
17-03-18 03:54:14.344 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 03:54:14.754 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 604
17-03-18 03:54:14.754 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 604
17-03-18 03:54:14.754 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:54:14.754 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:54:14.754 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 2684358704, 0x0, 391868352) start.
17-03-18 03:54:14.754 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 604
17-03-18 03:54:14.754 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 604
17-03-18 03:54:14.754 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:54:14.764 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:54:14.764 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 2719780968, 0x0, 418435064) start.
17-03-18 03:54:14.944 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36187 797
17-03-18 03:54:15.094 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP turning grn on 947
17-03-18 03:54:15.134 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 2684358704, 0x0, 391868352) end. Duration was 379 ms.
17-03-18 03:54:15.134 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-18 03:54:15.134 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:54:15.134 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 2719780968, 0x0, 418435064) end. Duration was 378 ms.
17-03-18 03:54:15.134 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-18 03:54:15.134 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:54:15.144 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 03:54:15.144 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-18 03:54:15.144 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 03:54:15.154 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-18 03:54:15.294 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1145
17-03-18 03:54:15.294 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1145
17-03-18 03:54:15.294 -07 000000437 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:54:15.434 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1145
17-03-18 03:54:15.434 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1145
17-03-18 03:54:15.434 -07 000000437 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:54:15.434 -07 000000437 INF: Camera: sBCa_ReadImage(785074288, 2755203232, 0x0, 391868352) start.
17-03-18 03:54:15.434 -07 000000625 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:54:15.434 -07 000000625 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:54:15.434 -07 000000625 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-18 03:54:15.484 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP 1338
17-03-18 03:54:15.484 -07 000000512 INF: FPGA: Recv CAMDBLSNAP
17-03-18 03:54:15.484 -07 000000610 INF: FPGA: 'CAMDBLSNAP 412 412 198 198 36187 150' command took 2 ms to send, 1339 ms to get response, and 1345 ms overall
17-03-18 03:54:15.764 -07 000000462 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 118, FrontChillerTemperature: 3.981281,
17-03-18 03:54:15.834 -07 000000625 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 392 ms.
17-03-18 03:54:15.834 -07 000000625 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-18 03:54:15.834 -07 000000625 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:54:15.834 -07 000000437 INF: Camera: sBCa_ReadImage(785074288, 2755203232, 0x0, 391868352) end. Duration was 399 ms.
17-03-18 03:54:15.834 -07 000000437 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 03:54:15.834 -07 000000437 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:54:15.834 -07 000000625 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 03:54:15.834 -07 000000437 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:54:15.834 -07 000000437 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 538 ms.
17-03-18 03:54:15.834 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) start.
17-03-18 03:54:15.844 -07 000000625 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-18 03:54:15.874 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) end. Duration was 43 ms.
17-03-18 03:54:15.874 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) start.
17-03-18 03:54:15.924 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) end. Duration was 43 ms.
17-03-18 03:54:15.924 -07 000000610 INF: Move compensator for Bottom-surface imaging.
17-03-18 03:54:15.924 -07 000000610 INF: FPGA: Xmit EMCUR 80\n [Compensator]
17-03-18 03:54:15.924 -07 000000462 INF: FPGA: Recv EMCUR 
17-03-18 03:54:15.934 -07 000000610 INF: FPGA: 'EMCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 03:54:15.934 -07 000000610 INF: FPGA: Xmit EMIN 20 40\n [Compensator]
17-03-18 03:54:16.434 -07 000000608 INF: FPGA: Recv EMIN
17-03-18 03:54:16.434 -07 000000610 INF: FPGA: 'EMIN 20 40' command took 0 ms to send, 493 ms to get response, and 502 ms overall
17-03-18 03:54:16.434 -07 000000610 INF: FPGA: Xmit EMCUR 60\n [Compensator]
17-03-18 03:54:16.434 -07 000000462 INF: FPGA: Recv EMCUR 
17-03-18 03:54:16.444 -07 000000610 INF: FPGA: 'EMCUR 60' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 03:54:16.444 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 03:54:16.444 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 1 at Y-position 74.83056640625, Z-Position -0.164855990577822. ------
17-03-18 03:54:16.444 -07 000000611 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 03:54:16.444 -07 000000512 INF: Y Motor: MoveYZ optimized starting. Moving Y to 59.9126 mm, moving Z to -0.13949 mm
17-03-18 03:54:16.444 -07 000000512 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 03:54:16.454 -07 000000437 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True)
17-03-18 03:54:16.454 -07 000000437 INF: Y Motor: Moving to 59.9126 mm, started at 74.8306 mm, delta = -14.9180 mm
17-03-18 03:54:16.454 -07 000000591 INF: FPGA: Recv FOCMRRCUR 
17-03-18 03:54:16.454 -07 000000611 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 03:54:16.454 -07 000000437 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:54:16.454 -07 000000474 INF: Z Motor: Entering MoveAbsStepped (DAC = 30471, sync = True, waitForSettling = False)
17-03-18 03:54:16.454 -07 000000474 INF: Z Motor: Moving to -0.139487 mm, started at -0.164856 mm, distance = 25.37 um
17-03-18 03:54:16.454 -07 000000462 INF: FPGA: Recv YRDPOS 153255
17-03-18 03:54:16.464 -07 000000611 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 03:54:16.464 -07 000000437 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:16.464 -07 000000437 INF: Y Motor: Encoder = 153255 = motor step 119730.5 = 74.8315 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:54:16.464 -07 000000437 INF: Y Motor: Last commanded position = 74.8526 mm (119764.2 steps), delta from last commanded position = -14.9400 mm (-23904.0 steps). UsingTableMove = False
17-03-18 03:54:16.464 -07 000000437 INF: Y Motor: Moving to 122701 encoder counts
17-03-18 03:54:16.474 -07 000000474 INF: FPGA: Xmit ZDACW 30471\n [Z Motor]
17-03-18 03:54:16.474 -07 000000590 INF: FPGA: Recv ZDACW
17-03-18 03:54:16.484 -07 000000437 INF: FPGA: Xmit YMVTO 122701\n [Y Motor]
17-03-18 03:54:16.484 -07 000000474 INF: FPGA: 'ZDACW 30471' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-18 03:54:16.494 -07 000000474 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:54:16.494 -07 000000590 INF: FPGA: Recv ZDACR 30471
17-03-18 03:54:16.504 -07 000000474 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 03:54:16.504 -07 000000474 INF: Z Motor: MoveAbsStepped took 48 ms (did NOT wait for settling yet))
17-03-18 03:54:16.614 -07 000000591 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 03:54:16.614 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 117. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1690, R2=1759, Total=3449. Warn if over 250 bubbles per interval.
17-03-18 03:54:16.664 -07 000000590 INF: FPGA: Recv FOCMRRFOC
17-03-18 03:54:16.664 -07 000000611 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 211 ms overall
17-03-18 03:54:18.114 -07 000000474 INF: FPGA: Recv YMVTO 122703 23903
17-03-18 03:54:18.114 -07 000000437 INF: FPGA: 'YMVTO 122701' command took 0 ms to send, 1622 ms to get response, and 1642 ms overall
17-03-18 03:54:18.114 -07 000000437 INF: Y Motor: Position error before settling = 2 encoder counts (0.001 mm)
17-03-18 03:54:18.114 -07 000000437 INF: Y Motor: To move from 74.832 to 59.913 (-14.918 mm) should take 23870 steps, but required 23903 steps (14.939 mm). Slippage = 0.021 mm (0.00%).
17-03-18 03:54:18.114 -07 000000437 INF: Y Motor: FPGA move command 'YMVTO 122701' took 1643 ms, distance = 14.918 mm, average velocity = 9.080 mm/sec
17-03-18 03:54:20.964 -07 000000437 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:54:20.964 -07 000000625 INF: FPGA: Recv YRDPOS 122696
17-03-18 03:54:20.974 -07 000000437 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:54:20.974 -07 000000437 INF: Y Motor: Encoder = 122696 = motor step 95856.3 = 59.9102 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:54:21.004 -07 000000437 INF: Y Motor: After move to 59.912609, error = -0.002453, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 03:54:21.004 -07 000000437 INF: Y Motor: Position error after settling = -5 encoder counts (-0.002 mm), Delta during settling = -7 counts (-0.003 mm)
17-03-18 03:54:21.004 -07 000000437 INF: Y Motor: Moved to 59.9102 after 4559 ms
17-03-18 03:54:21.014 -07 000000512 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139487 mm (DAC = 30471)
17-03-18 03:54:21.014 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:21.014 -07 000000590 INF: FPGA: Recv ZSGSRD 31010
17-03-18 03:54:21.024 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 03:54:21.024 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:21.024 -07 000000474 INF: FPGA: Recv ZSGSRD 31012
17-03-18 03:54:21.034 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:21.034 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:21.034 -07 000000474 INF: FPGA: Recv ZSGSRD 30997
17-03-18 03:54:21.044 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:21.044 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:21.044 -07 000000474 INF: FPGA: Recv ZSGSRD 31003
17-03-18 03:54:21.054 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:21.054 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:21.054 -07 000000474 INF: FPGA: Recv ZSGSRD 31006
17-03-18 03:54:21.064 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:21.064 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:21.064 -07 000000625 INF: FPGA: Recv ZSGSRD 31002
17-03-18 03:54:21.074 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:21.074 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:21.074 -07 000000625 INF: FPGA: Recv ZSGSRD 31008
17-03-18 03:54:21.084 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:21.084 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:21.084 -07 000000608 INF: FPGA: Recv ZSGSRD 31003
17-03-18 03:54:21.094 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:21.094 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:21.094 -07 000000608 INF: FPGA: Recv ZSGSRD 31001
17-03-18 03:54:21.104 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:21.104 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:21.104 -07 000000608 INF: FPGA: Recv ZSGSRD 31006
17-03-18 03:54:21.114 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:21.114 -07 000000512 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:54:21.114 -07 000000462 INF: FPGA: Recv ZPIEZORD 26444
17-03-18 03:54:21.124 -07 000000512 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:21.124 -07 000000512 INF: Z Motor: Piezo is near 36.5 V (nominally 0 to 100 V), expect near 46.5 V, since DAC is at 4.650 V. Piezo Error = -10.0 V.
17-03-18 03:54:21.124 -07 000000512 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.5 um, Read 10 ADC samples: Avg = 31005 (-138.7 uncal um), Error = 0.8 uncal um, Median = 31004 (-138.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 30997 (-138.7 uncal um), Max = 31012 (-138.7 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 03:54:21.124 -07 000000512 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 31005, posNoise = 7, negNoise = 8
17-03-18 03:54:21.124 -07 000000512 INF: Z Motor: After move to -0.139487, error = -0.000019, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:54:21.124 -07 000000512 INF: Z Motor: Settle wait time = 4562 ms, measure time = 106 ms (allowed 150 ms), total time = 4668 ms
17-03-18 03:54:21.124 -07 000000512 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-18 03:54:21.144 -07 000000447 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 118, FrontChillerTemperature: 4.011254,
17-03-18 03:54:21.174 -07 000000512 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 4722 ms
17-03-18 03:54:21.174 -07 000000512 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 03:54:21.174 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:54:21.174 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:54:21.174 -07 000000591 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:54:21.174 -07 000000447 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:54:21.174 -07 000000608 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 03:54:21.174 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:54:21.174 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 03:54:21.174 -07 000000608 INF: Camera: sBCa_SetPowerMode(785074288, 1) start.
17-03-18 03:54:21.204 -07 000000608 INF: Camera: sBCa_SetPowerMode(785074288, 1) end. Duration was 22 ms.
17-03-18 03:54:21.204 -07 000000608 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 03:54:21.204 -07 000000608 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 03:54:21.204 -07 000000608 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 03:54:21.214 -07 000000608 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-18 03:54:21.214 -07 000000608 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 39 ms.
17-03-18 03:54:21.214 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 03:54:21.264 -07 000000611 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 03:54:21.564 -07 000000611 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 03:54:21.564 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 03:54:21.564 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 03:54:21.564 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-18 03:54:21.604 -07 000000474 INF: FPGA: Recv @CAMSNAP 380
17-03-18 03:54:21.604 -07 000000611 INF: FPGA: Recv CAMSNAP
17-03-18 03:54:21.604 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 375 ms to get response, and 386 ms overall
17-03-18 03:54:21.614 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 03:54:21.684 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 120 ms.
17-03-18 03:54:21.684 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:54:21.684 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 03:54:21.684 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 123 ms.
17-03-18 03:54:21.694 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 117. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1690, R2=1759, Total=3449. Warn if over 250 bubbles per interval.
17-03-18 03:54:21.704 -07 000000012 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 03:54:21.704 -07 000000590 INF: Image SNR check: start
17-03-18 03:54:21.714 -07 000000512 INF: FPGA: Recv FOCMRRCUR 
17-03-18 03:54:21.714 -07 000000012 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 6 ms overall
17-03-18 03:54:21.714 -07 000000012 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 03:54:21.724 -07 000000590 INF: Image SNR check: pass  [peak (Max-Min)=127.22]
17-03-18 03:54:21.724 -07 000000590 INF: Autofocus start
17-03-18 03:54:21.724 -07 000000590 INF: MeasureProfile start
17-03-18 03:54:21.734 -07 000000590 INF: MeasureProfile done
17-03-18 03:54:21.734 -07 000000590 INF: X=-38  Z correction [um]=-0.1883801
17-03-18 03:54:21.734 -07 000000590 INF: Autofocus finished
17-03-18 03:54:21.914 -07 000000608 INF: FPGA: Recv FOCMRRIMG
17-03-18 03:54:21.914 -07 000000012 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 195 ms to get response, and 202 ms overall
17-03-18 03:54:21.924 -07 000000610 INF: ------------ Scan Snapping tile 1 at Y-position 59.91015625, Z-position -0.139506049466433. ----------
17-03-18 03:54:21.924 -07 000000610 INF: Cycle	118	Tile	1	Exposure Settings		A	412	G	198	T	198	C	412
17-03-18 03:54:21.924 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28942, sync = True, waitForSettling = True)
17-03-18 03:54:21.924 -07 000000610 INF: Z Motor: Moving to -0.132488 mm, started at -0.139506 mm, distance = 7.02 um
17-03-18 03:54:21.924 -07 000000610 INF: FPGA: Xmit ZDACW 28942\n [Z Motor]
17-03-18 03:54:21.924 -07 000000590 INF: FPGA: Recv ZDACW
17-03-18 03:54:21.934 -07 000000610 INF: FPGA: 'ZDACW 28942' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 03:54:21.934 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:54:21.934 -07 000000462 INF: FPGA: Recv ZDACR 28942
17-03-18 03:54:21.944 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:21.944 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 03:54:22.094 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:22.094 -07 000000462 INF: FPGA: Recv ZSGSRD 29914
17-03-18 03:54:22.104 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:22.104 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:22.104 -07 000000462 INF: FPGA: Recv ZSGSRD 29915
17-03-18 03:54:22.114 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:22.114 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:22.114 -07 000000462 INF: FPGA: Recv ZSGSRD 29916
17-03-18 03:54:22.124 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:22.124 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:22.124 -07 000000462 INF: FPGA: Recv ZSGSRD 29904
17-03-18 03:54:22.134 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:22.134 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:22.134 -07 000000462 INF: FPGA: Recv ZSGSRD 29910
17-03-18 03:54:22.144 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:22.144 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:22.144 -07 000000590 INF: FPGA: Recv ZSGSRD 29920
17-03-18 03:54:22.154 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:22.154 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:22.154 -07 000000012 INF: FPGA: Recv ZSGSRD 29909
17-03-18 03:54:22.164 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:22.164 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:22.164 -07 000000012 INF: FPGA: Recv ZSGSRD 29912
17-03-18 03:54:22.174 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:22.174 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:22.174 -07 000000625 INF: FPGA: Recv ZSGSRD 29912
17-03-18 03:54:22.184 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:22.184 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:22.184 -07 000000625 INF: FPGA: Recv ZSGSRD 29911
17-03-18 03:54:22.194 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:22.194 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:54:22.194 -07 000000625 INF: FPGA: Recv ZPIEZORD 25256
17-03-18 03:54:22.204 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:22.204 -07 000000610 INF: Z Motor: Piezo is near 34.0 V (nominally 0 to 100 V), expect near 44.2 V, since DAC is at 4.416 V. Piezo Error = -10.2 V.
17-03-18 03:54:22.204 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.5 um, Read 10 ADC samples: Avg = 29912 (-131.7 uncal um), Error = 0.8 uncal um, Median = 29912 (-131.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 29904 (-131.6 uncal um), Max = 29920 (-131.8 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 03:54:22.204 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29912, posNoise = 8, negNoise = 8
17-03-18 03:54:22.204 -07 000000610 INF: Z Motor: After move to -0.132488, error = 0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:54:22.204 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-18 03:54:22.204 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:54:22.204 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:54:22.204 -07 000000591 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:54:22.204 -07 000000625 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 03:54:22.204 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:54:22.204 -07 000000437 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:54:22.204 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 03:54:22.204 -07 000000625 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 03:54:22.204 -07 000000447 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 03:54:22.204 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 03:54:22.204 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 03:54:22.204 -07 000000447 INF: Camera: sBCa_SetPowerMode(785074704, 1) start.
17-03-18 03:54:22.214 -07 000000625 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 03:54:22.214 -07 000000625 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 03:54:22.214 -07 000000625 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 03:54:22.214 -07 000000625 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 12 ms.
17-03-18 03:54:22.224 -07 000000447 INF: Camera: sBCa_SetPowerMode(785074704, 1) end. Duration was 20 ms.
17-03-18 03:54:22.224 -07 000000447 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 03:54:22.234 -07 000000447 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 03:54:22.234 -07 000000447 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 03:54:22.244 -07 000000447 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 03:54:22.244 -07 000000447 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 33 ms.
17-03-18 03:54:22.244 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 412 412 198 198 29119 150\n [Camera]
17-03-18 03:54:22.444 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 03:54:22.854 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 604
17-03-18 03:54:22.854 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 604
17-03-18 03:54:22.854 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:54:22.854 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 604
17-03-18 03:54:22.854 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 604
17-03-18 03:54:22.854 -07 000000625 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:54:22.854 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:54:22.854 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 2334002848, 0x0, 391868352) start.
17-03-18 03:54:22.864 -07 000000625 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:54:22.864 -07 000000625 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-18 03:54:23.044 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29119 797
17-03-18 03:54:23.194 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP turning grn on 947
17-03-18 03:54:23.234 -07 000000625 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 370 ms.
17-03-18 03:54:23.234 -07 000000625 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 370 ms.
17-03-18 03:54:23.234 -07 000000625 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:54:23.234 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 2334002848, 0x0, 391868352) end. Duration was 376 ms.
17-03-18 03:54:23.234 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-18 03:54:23.234 -07 000000474 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:54:23.234 -07 000000625 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 03:54:23.244 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 03:54:23.244 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-18 03:54:23.244 -07 000000625 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-18 03:54:23.394 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1145
17-03-18 03:54:23.394 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1145
17-03-18 03:54:23.394 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:54:23.514 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1145
17-03-18 03:54:23.514 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1145
17-03-18 03:54:23.514 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:54:23.524 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:54:23.524 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:54:23.524 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-18 03:54:23.524 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 2334002848, 0x0, 418435064) start.
17-03-18 03:54:23.584 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP 1338
17-03-18 03:54:23.584 -07 000000012 INF: FPGA: Recv CAMDBLSNAP
17-03-18 03:54:23.584 -07 000000610 INF: FPGA: 'CAMDBLSNAP 412 412 198 198 29119 150' command took 5 ms to send, 1337 ms to get response, and 1345 ms overall
17-03-18 03:54:23.584 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 03:54:23.584 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 2 at Y-position 59.91015625, Z-Position -0.132484385595489. ------
17-03-18 03:54:23.594 -07 000000462 INF: Y Motor: MoveYZ optimized starting. Moving Y to 60.7426 mm, moving Z to -0.13894 mm
17-03-18 03:54:23.594 -07 000000462 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 03:54:23.594 -07 000000625 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 03:54:23.594 -07 000000437 INF: Y Motor: Entering MoveAbsStepped (target = 97188 steps, sync = True, waitForSettling = True)
17-03-18 03:54:23.594 -07 000000437 INF: Y Motor: Moving to 60.7426 mm, started at 59.9102 mm, delta = 0.8325 mm
17-03-18 03:54:23.594 -07 000000012 INF: Z Motor: Entering MoveAbsStepped (DAC = 30351, sync = True, waitForSettling = False)
17-03-18 03:54:23.594 -07 000000012 INF: Z Motor: Moving to -0.138938 mm, started at -0.132484 mm, distance = -6.45 um
17-03-18 03:54:23.594 -07 000000512 INF: FPGA: Recv FOCMRRCUR 
17-03-18 03:54:23.604 -07 000000625 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 03:54:23.604 -07 000000437 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:54:23.604 -07 000000474 INF: FPGA: Recv YRDPOS 122696
17-03-18 03:54:23.614 -07 000000012 INF: FPGA: Xmit ZDACW 30351\n [Z Motor]
17-03-18 03:54:23.614 -07 000000437 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-18 03:54:23.614 -07 000000437 INF: Y Motor: Encoder = 122696 = motor step 95856.3 = 59.9102 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:54:23.614 -07 000000437 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 03:54:23.614 -07 000000437 INF: Y Motor: Moving 1332 steps2
17-03-18 03:54:23.614 -07 000000474 INF: FPGA: Recv ZDACW
17-03-18 03:54:23.624 -07 000000625 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 03:54:23.624 -07 000000012 INF: FPGA: 'ZDACW 30351' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-18 03:54:23.634 -07 000000437 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 03:54:23.644 -07 000000012 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:54:23.644 -07 000000590 INF: FPGA: Recv ZDACR 30351
17-03-18 03:54:23.654 -07 000000012 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 03:54:23.654 -07 000000012 INF: Z Motor: MoveAbsStepped took 53 ms (did NOT wait for settling yet))
17-03-18 03:54:23.824 -07 000000611 INF: FPGA: Recv FOCMRRFOC
17-03-18 03:54:23.824 -07 000000625 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 194 ms to get response, and 223 ms overall
17-03-18 03:54:23.924 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 396 ms.
17-03-18 03:54:23.924 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 03:54:23.924 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:54:23.924 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 2334002848, 0x0, 418435064) end. Duration was 396 ms.
17-03-18 03:54:23.924 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-18 03:54:23.924 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:54:23.924 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 03:54:23.924 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 531 ms.
17-03-18 03:54:23.924 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 03:54:23.934 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 415 ms.
17-03-18 03:54:24.004 -07 000000512 INF: FPGA: Recv YMVTILE
17-03-18 03:54:24.004 -07 000000437 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 395 ms overall
17-03-18 03:54:24.044 -07 000000437 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:54:24.044 -07 000000447 INF: FPGA: Recv YRDPOS 124380
17-03-18 03:54:24.054 -07 000000437 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 03:54:24.054 -07 000000437 INF: Y Motor: Encoder = 124380 = motor step 97171.9 = 60.7324 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:54:24.054 -07 000000437 INF: Y Motor: Position error before settling (table move) = -21 encoder counts (-0.010 mm)
17-03-18 03:54:24.054 -07 000000437 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.832 mm, average velocity = 2.097 mm/sec
17-03-18 03:54:25.004 -07 000000437 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:54:25.004 -07 000000512 INF: FPGA: Recv YRDPOS 124380
17-03-18 03:54:25.014 -07 000000437 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:54:25.014 -07 000000437 INF: Y Motor: Encoder = 124380 = motor step 97171.9 = 60.7324 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:54:25.044 -07 000000437 INF: Y Motor: After move to 60.742607, error = -0.010185, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 03:54:25.044 -07 000000437 INF: Y Motor: Position error after settling (table move) = -21 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 03:54:25.044 -07 000000437 INF: Y Motor: Moved to 60.7324 after 1445 ms (table move)
17-03-18 03:54:25.044 -07 000000462 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138938 mm (DAC = 30351)
17-03-18 03:54:25.044 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:25.044 -07 000000611 INF: FPGA: Recv ZSGSRD 30921
17-03-18 03:54:25.054 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 03:54:25.054 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:25.054 -07 000000625 INF: FPGA: Recv ZSGSRD 30916
17-03-18 03:54:25.064 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:25.064 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:25.064 -07 000000512 INF: FPGA: Recv ZSGSRD 30921
17-03-18 03:54:25.074 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:25.074 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:25.074 -07 000000437 INF: FPGA: Recv ZSGSRD 30916
17-03-18 03:54:25.084 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:25.084 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:25.084 -07 000000512 INF: FPGA: Recv ZSGSRD 30918
17-03-18 03:54:25.094 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:25.094 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:25.094 -07 000000591 INF: FPGA: Recv ZSGSRD 30920
17-03-18 03:54:25.104 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:25.104 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:25.104 -07 000000625 INF: FPGA: Recv ZSGSRD 30915
17-03-18 03:54:25.114 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:54:25.114 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:25.114 -07 000000474 INF: FPGA: Recv ZSGSRD 30912
17-03-18 03:54:25.124 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:25.124 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:25.124 -07 000000437 INF: FPGA: Recv ZSGSRD 30912
17-03-18 03:54:25.134 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:25.134 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:25.134 -07 000000012 INF: FPGA: Recv ZSGSRD 30921
17-03-18 03:54:25.144 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:25.144 -07 000000462 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:54:25.144 -07 000000437 INF: FPGA: Recv ZPIEZORD 26655
17-03-18 03:54:25.154 -07 000000462 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:25.154 -07 000000462 INF: Z Motor: Piezo is near 36.9 V (nominally 0 to 100 V), expect near 46.3 V, since DAC is at 4.631 V. Piezo Error = -9.4 V.
17-03-18 03:54:25.154 -07 000000462 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.9 um, Read 10 ADC samples: Avg = 30917 (-138.1 uncal um), Error = 0.8 uncal um, Median = 30917 (-138.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 30912 (-138.1 uncal um), Max = 30921 (-138.2 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 03:54:25.154 -07 000000462 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30917, posNoise = 4, negNoise = 5
17-03-18 03:54:25.154 -07 000000462 INF: Z Motor: After move to -0.138938, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:54:25.154 -07 000000462 INF: Z Motor: Settle wait time = 1449 ms, measure time = 105 ms (allowed 150 ms), total time = 1554 ms
17-03-18 03:54:25.154 -07 000000462 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 03:54:25.204 -07 000000462 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1606 ms
17-03-18 03:54:25.204 -07 000000462 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 03:54:25.204 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:54:25.204 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:54:25.204 -07 000000447 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:54:25.204 -07 000000591 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:54:25.204 -07 000000474 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 03:54:25.204 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:54:25.204 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 03:54:25.204 -07 000000474 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 03:54:25.214 -07 000000474 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 03:54:25.214 -07 000000474 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 03:54:25.224 -07 000000474 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-18 03:54:25.224 -07 000000474 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms.
17-03-18 03:54:25.224 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 03:54:25.274 -07 000000625 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 03:54:25.574 -07 000000625 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 03:54:25.574 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 03:54:25.574 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 03:54:25.574 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 03:54:25.614 -07 000000590 INF: FPGA: Recv @CAMSNAP 380
17-03-18 03:54:25.614 -07 000000512 INF: FPGA: Recv CAMSNAP
17-03-18 03:54:25.614 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 374 ms to get response, and 385 ms overall
17-03-18 03:54:25.704 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 127 ms.
17-03-18 03:54:25.704 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:54:25.704 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 03:54:25.704 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 130 ms.
17-03-18 03:54:25.714 -07 000000437 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 03:54:25.714 -07 000000512 INF: Autofocus start
17-03-18 03:54:25.714 -07 000000512 INF: MeasureProfile start
17-03-18 03:54:25.714 -07 000000590 INF: FPGA: Recv FOCMRRCUR 
17-03-18 03:54:25.724 -07 000000437 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 03:54:25.724 -07 000000437 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 03:54:25.724 -07 000000512 INF: MeasureProfile done
17-03-18 03:54:25.724 -07 000000512 INF: X=0  Z correction [um]=-0.02394831
17-03-18 03:54:25.724 -07 000000512 INF: Autofocus finished
17-03-18 03:54:25.924 -07 000000474 INF: FPGA: Recv FOCMRRIMG
17-03-18 03:54:25.924 -07 000000437 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 195 ms to get response, and 204 ms overall
17-03-18 03:54:25.934 -07 000000610 INF: ------------ Scan Snapping tile 2 at Y-position 60.732421875, Z-position -0.138940718797959. ----------
17-03-18 03:54:25.934 -07 000000610 INF: Cycle	118	Tile	2	Exposure Settings		A	412	G	198	T	198	C	412
17-03-18 03:54:25.934 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28859, sync = True, waitForSettling = True)
17-03-18 03:54:25.934 -07 000000610 INF: Z Motor: Moving to -0.132108 mm, started at -0.138941 mm, distance = 6.83 um
17-03-18 03:54:25.934 -07 000000610 INF: FPGA: Xmit ZDACW 28859\n [Z Motor]
17-03-18 03:54:25.934 -07 000000591 INF: FPGA: Recv ZDACW
17-03-18 03:54:25.944 -07 000000610 INF: FPGA: 'ZDACW 28859' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 03:54:25.944 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:54:25.944 -07 000000591 INF: FPGA: Recv ZDACR 28859
17-03-18 03:54:25.954 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:25.954 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 03:54:26.104 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:26.104 -07 000000462 INF: FPGA: Recv ZSGSRD 29849
17-03-18 03:54:26.114 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:26.114 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:26.114 -07 000000591 INF: FPGA: Recv ZSGSRD 29861
17-03-18 03:54:26.124 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:26.124 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:26.124 -07 000000591 INF: FPGA: Recv ZSGSRD 29849
17-03-18 03:54:26.134 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:26.134 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:26.134 -07 000000591 INF: FPGA: Recv ZSGSRD 29851
17-03-18 03:54:26.144 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:26.144 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:26.144 -07 000000625 INF: FPGA: Recv ZSGSRD 29862
17-03-18 03:54:26.154 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:26.154 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:26.154 -07 000000437 INF: FPGA: Recv ZSGSRD 29854
17-03-18 03:54:26.164 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:26.164 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:26.164 -07 000000437 INF: FPGA: Recv ZSGSRD 29855
17-03-18 03:54:26.174 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:26.194 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:26.194 -07 000000462 INF: FPGA: Recv ZSGSRD 29858
17-03-18 03:54:26.204 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 03:54:26.224 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:26.224 -07 000000437 INF: FPGA: Recv ZSGSRD 29851
17-03-18 03:54:26.234 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 03:54:26.254 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:26.254 -07 000000590 INF: FPGA: Recv ZSGSRD 29854
17-03-18 03:54:26.264 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-18 03:54:26.264 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:54:26.264 -07 000000462 INF: FPGA: Recv ZPIEZORD 25256
17-03-18 03:54:26.274 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:26.274 -07 000000610 INF: Z Motor: Piezo is near 34.0 V (nominally 0 to 100 V), expect near 44.0 V, since DAC is at 4.404 V. Piezo Error = -10.1 V.
17-03-18 03:54:26.274 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.1 um, Read 10 ADC samples: Avg = 29854 (-131.3 uncal um), Error = 0.8 uncal um, Median = 29854 (-131.3 uncal um), StdDev = 5 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 29849 (-131.3 uncal um), Max = 29862 (-131.4 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 03:54:26.274 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29854, posNoise = 8, negNoise = 5
17-03-18 03:54:26.274 -07 000000610 INF: Z Motor: After move to -0.132108, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:54:26.274 -07 000000610 INF: Z Motor: MoveAbsStepped took 338 ms)
17-03-18 03:54:26.274 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:54:26.274 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:54:26.274 -07 000000611 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:54:26.274 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:54:26.274 -07 000000447 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 03:54:26.274 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:54:26.274 -07 000000437 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 03:54:26.274 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 03:54:26.274 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 03:54:26.274 -07 000000447 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 03:54:26.274 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 03:54:26.274 -07 000000437 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 03:54:26.284 -07 000000447 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 03:54:26.284 -07 000000447 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 03:54:26.284 -07 000000437 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-18 03:54:26.284 -07 000000437 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 03:54:26.294 -07 000000447 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 03:54:26.294 -07 000000447 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 03:54:26.294 -07 000000437 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 03:54:26.294 -07 000000437 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 03:54:26.304 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 412 412 198 198 29035 150\n [Camera]
17-03-18 03:54:26.504 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 03:54:26.504 -07 000000474 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 118, FrontChillerTemperature: 3.997626,
17-03-18 03:54:26.614 -07 000000590 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 03:54:26.614 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 117. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1690, R2=1759, Total=3449. Warn if over 250 bubbles per interval.
17-03-18 03:54:26.914 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 608
17-03-18 03:54:26.914 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 608
17-03-18 03:54:26.914 -07 000000437 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:54:26.914 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 608
17-03-18 03:54:26.914 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 608
17-03-18 03:54:26.914 -07 000000474 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:54:26.924 -07 000000437 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:54:26.924 -07 000000437 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) start.
17-03-18 03:54:26.924 -07 000000474 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:54:26.924 -07 000000474 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) start.
17-03-18 03:54:27.104 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29035 797
17-03-18 03:54:27.254 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP turning grn on 947
17-03-18 03:54:27.314 -07 000000437 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) end. Duration was 396 ms.
17-03-18 03:54:27.314 -07 000000437 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 03:54:27.314 -07 000000437 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:54:27.324 -07 000000474 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) end. Duration was 396 ms.
17-03-18 03:54:27.324 -07 000000437 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:54:27.324 -07 000000437 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 03:54:27.324 -07 000000474 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 03:54:27.324 -07 000000474 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:54:27.324 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:54:27.334 -07 000000474 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-18 03:54:27.454 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1145
17-03-18 03:54:27.454 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1145
17-03-18 03:54:27.454 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:54:27.564 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1145
17-03-18 03:54:27.564 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1145
17-03-18 03:54:27.564 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:54:27.574 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:54:27.574 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-18 03:54:27.574 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:54:27.574 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 2334002848, 0x0, 418435064) start.
17-03-18 03:54:27.644 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP 1337
17-03-18 03:54:27.644 -07 000000462 INF: FPGA: Recv CAMDBLSNAP
17-03-18 03:54:27.644 -07 000000610 INF: FPGA: 'CAMDBLSNAP 412 412 198 198 29035 150' command took 2 ms to send, 1335 ms to get response, and 1344 ms overall
17-03-18 03:54:27.644 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 03:54:27.644 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 3 at Y-position 60.732421875, Z-Position -0.132111781291267. ------
17-03-18 03:54:27.654 -07 000000012 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 03:54:27.654 -07 000000611 INF: Y Motor: MoveYZ optimized starting. Moving Y to 61.5726 mm, moving Z to -0.13882 mm
17-03-18 03:54:27.654 -07 000000611 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 03:54:27.654 -07 000000512 INF: Y Motor: Entering MoveAbsStepped (target = 98516 steps, sync = True, waitForSettling = True)
17-03-18 03:54:27.654 -07 000000512 INF: Y Motor: Moving to 61.5726 mm, started at 60.7324 mm, delta = 0.8402 mm
17-03-18 03:54:27.654 -07 000000625 INF: Z Motor: Entering MoveAbsStepped (DAC = 30326, sync = True, waitForSettling = False)
17-03-18 03:54:27.654 -07 000000625 INF: Z Motor: Moving to -0.138824 mm, started at -0.132112 mm, distance = -6.71 um
17-03-18 03:54:27.654 -07 000000590 INF: FPGA: Recv FOCMRRCUR 
17-03-18 03:54:27.664 -07 000000012 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:27.664 -07 000000625 INF: FPGA: Xmit ZDACW 30326\n [Z Motor]
17-03-18 03:54:27.664 -07 000000437 INF: FPGA: Recv ZDACW
17-03-18 03:54:27.674 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:54:27.674 -07 000000625 INF: FPGA: 'ZDACW 30326' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-18 03:54:27.674 -07 000000501 INF: FPGA: Recv YRDPOS 124381
17-03-18 03:54:27.684 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-18 03:54:27.684 -07 000000512 INF: Y Motor: Encoder = 124381 = motor step 97172.7 = 60.7329 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:54:27.684 -07 000000012 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 03:54:27.684 -07 000000512 INF: Y Motor: Last commanded position = 60.7426 mm (97188.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 03:54:27.684 -07 000000512 INF: Y Motor: Moving 1344 steps-21
17-03-18 03:54:27.694 -07 000000625 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:54:27.694 -07 000000590 INF: FPGA: Recv ZDACR 30326
17-03-18 03:54:27.704 -07 000000625 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 03:54:27.704 -07 000000625 INF: Z Motor: MoveAbsStepped took 46 ms (did NOT wait for settling yet))
17-03-18 03:54:27.704 -07 000000512 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 03:54:27.884 -07 000000590 INF: FPGA: Recv FOCMRRFOC
17-03-18 03:54:27.884 -07 000000012 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 222 ms overall
17-03-18 03:54:27.974 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 2334002848, 0x0, 418435064) end. Duration was 401 ms.
17-03-18 03:54:27.974 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 03:54:27.974 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:54:27.974 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 401 ms.
17-03-18 03:54:27.974 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 03:54:27.974 -07 000000474 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:54:27.974 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 03:54:27.974 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 03:54:27.974 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 523 ms.
17-03-18 03:54:27.984 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 419 ms.
17-03-18 03:54:28.074 -07 000000625 INF: FPGA: Recv YMVTILE
17-03-18 03:54:28.074 -07 000000512 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 393 ms overall
17-03-18 03:54:28.124 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:54:28.124 -07 000000447 INF: FPGA: Recv YRDPOS 126082
17-03-18 03:54:28.134 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 03:54:28.134 -07 000000512 INF: Y Motor: Encoder = 126082 = motor step 98501.6 = 61.5635 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:54:28.134 -07 000000512 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm)
17-03-18 03:54:28.134 -07 000000512 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 393 ms, distance = 0.840 mm, average velocity = 2.138 mm/sec
17-03-18 03:54:29.084 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:54:29.084 -07 000000012 INF: FPGA: Recv YRDPOS 126082
17-03-18 03:54:29.094 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:29.094 -07 000000512 INF: Y Motor: Encoder = 126082 = motor step 98501.6 = 61.5635 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:54:29.114 -07 000000512 INF: Y Motor: After move to 61.572609, error = -0.009132, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 03:54:29.124 -07 000000512 INF: Y Motor: Position error after settling (table move) = -19 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 03:54:29.124 -07 000000512 INF: Y Motor: Moved to 61.5635 after 1467 ms (table move)
17-03-18 03:54:29.124 -07 000000611 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138824 mm (DAC = 30326)
17-03-18 03:54:29.124 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:29.124 -07 000000512 INF: FPGA: Recv ZSGSRD 30911
17-03-18 03:54:29.134 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 03:54:29.134 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:29.134 -07 000000012 INF: FPGA: Recv ZSGSRD 30910
17-03-18 03:54:29.144 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:29.144 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:29.144 -07 000000012 INF: FPGA: Recv ZSGSRD 30902
17-03-18 03:54:29.154 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:29.154 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:29.154 -07 000000012 INF: FPGA: Recv ZSGSRD 30901
17-03-18 03:54:29.164 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:29.164 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:29.164 -07 000000012 INF: FPGA: Recv ZSGSRD 30898
17-03-18 03:54:29.174 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:29.174 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:29.174 -07 000000012 INF: FPGA: Recv ZSGSRD 30894
17-03-18 03:54:29.184 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:29.184 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:29.184 -07 000000012 INF: FPGA: Recv ZSGSRD 30896
17-03-18 03:54:29.194 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:29.194 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:29.194 -07 000000012 INF: FPGA: Recv ZSGSRD 30898
17-03-18 03:54:29.204 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:29.204 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:29.204 -07 000000012 INF: FPGA: Recv ZSGSRD 30900
17-03-18 03:54:29.214 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:29.214 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:29.214 -07 000000012 INF: FPGA: Recv ZSGSRD 30897
17-03-18 03:54:29.224 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:29.224 -07 000000611 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:54:29.224 -07 000000012 INF: FPGA: Recv ZPIEZORD 26632
17-03-18 03:54:29.234 -07 000000611 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:29.234 -07 000000611 INF: Z Motor: Piezo is near 36.9 V (nominally 0 to 100 V), expect near 46.3 V, since DAC is at 4.627 V. Piezo Error = -9.4 V.
17-03-18 03:54:29.234 -07 000000611 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.8 um, Read 10 ADC samples: Avg = 30901 (-138.0 uncal um), Error = 0.8 uncal um, Median = 30899 (-138.0 uncal um), StdDev = 6 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 30894 (-138.0 uncal um), Max = 30911 (-138.1 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 03:54:29.234 -07 000000611 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30901, posNoise = 10, negNoise = 7
17-03-18 03:54:29.234 -07 000000611 INF: Z Motor: After move to -0.138824, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:54:29.234 -07 000000611 INF: Z Motor: Settle wait time = 1470 ms, measure time = 107 ms (allowed 150 ms), total time = 1577 ms
17-03-18 03:54:29.234 -07 000000611 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-18 03:54:29.284 -07 000000611 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1629 ms
17-03-18 03:54:29.284 -07 000000611 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 03:54:29.284 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:54:29.284 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:54:29.284 -07 000000590 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:54:29.284 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:54:29.284 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 03:54:29.284 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:54:29.284 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 03:54:29.284 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 03:54:29.294 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 03:54:29.294 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 03:54:29.294 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 03:54:29.294 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-18 03:54:29.304 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 03:54:29.344 -07 000000437 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 03:54:29.644 -07 000000512 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 03:54:29.644 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 03:54:29.644 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 03:54:29.644 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 03:54:29.684 -07 000000590 INF: FPGA: Recv @CAMSNAP 380
17-03-18 03:54:29.684 -07 000000437 INF: FPGA: Recv CAMSNAP
17-03-18 03:54:29.684 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 384 ms overall
17-03-18 03:54:29.764 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 03:54:29.764 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:54:29.764 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 03:54:29.764 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 03:54:29.784 -07 000000625 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 03:54:29.784 -07 000000611 INF: Autofocus start
17-03-18 03:54:29.784 -07 000000611 INF: MeasureProfile start
17-03-18 03:54:29.784 -07 000000447 INF: FPGA: Recv FOCMRRCUR 
17-03-18 03:54:29.794 -07 000000625 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 03:54:29.794 -07 000000625 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 03:54:29.794 -07 000000611 INF: MeasureProfile done
17-03-18 03:54:29.794 -07 000000611 INF: X=32  Z correction [um]=0.1299841
17-03-18 03:54:29.794 -07 000000611 INF: Autofocus finished
17-03-18 03:54:29.994 -07 000000474 INF: FPGA: Recv FOCMRRIMG
17-03-18 03:54:29.994 -07 000000625 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 03:54:29.994 -07 000000610 INF: ------------ Scan Snapping tile 3 at Y-position 61.5634765625, Z-position -0.13883793140369. ----------
17-03-18 03:54:29.994 -07 000000610 INF: Cycle	118	Tile	3	Exposure Settings		A	412	G	198	T	198	C	412
17-03-18 03:54:30.004 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28867, sync = True, waitForSettling = True)
17-03-18 03:54:30.004 -07 000000610 INF: Z Motor: Moving to -0.132145 mm, started at -0.138838 mm, distance = 6.69 um
17-03-18 03:54:30.004 -07 000000610 INF: FPGA: Xmit ZDACW 28867\n [Z Motor]
17-03-18 03:54:30.004 -07 000000512 INF: FPGA: Recv ZDACW
17-03-18 03:54:30.014 -07 000000610 INF: FPGA: 'ZDACW 28867' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:30.014 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:54:30.014 -07 000000618 INF: FPGA: Recv ZDACR 28867
17-03-18 03:54:30.024 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:30.024 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 03:54:30.174 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:30.174 -07 000000590 INF: FPGA: Recv ZSGSRD 29857
17-03-18 03:54:30.184 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:54:30.184 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:30.184 -07 000000462 INF: FPGA: Recv ZSGSRD 29869
17-03-18 03:54:30.194 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:30.194 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:30.194 -07 000000611 INF: FPGA: Recv ZSGSRD 29858
17-03-18 03:54:30.204 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:30.204 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:30.204 -07 000000447 INF: FPGA: Recv ZSGSRD 29854
17-03-18 03:54:30.214 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:30.214 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:30.214 -07 000000462 INF: FPGA: Recv ZSGSRD 29856
17-03-18 03:54:30.224 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:30.224 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:30.224 -07 000000012 INF: FPGA: Recv ZSGSRD 29864
17-03-18 03:54:30.234 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:30.234 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:30.234 -07 000000611 INF: FPGA: Recv ZSGSRD 29866
17-03-18 03:54:30.244 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:30.244 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:30.244 -07 000000447 INF: FPGA: Recv ZSGSRD 29865
17-03-18 03:54:30.254 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:30.254 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:30.254 -07 000000437 INF: FPGA: Recv ZSGSRD 29856
17-03-18 03:54:30.264 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:30.264 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:30.264 -07 000000611 INF: FPGA: Recv ZSGSRD 29862
17-03-18 03:54:30.274 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:30.274 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:54:30.274 -07 000000625 INF: FPGA: Recv ZPIEZORD 25257
17-03-18 03:54:30.284 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:30.284 -07 000000610 INF: Z Motor: Piezo is near 34.0 V (nominally 0 to 100 V), expect near 44.0 V, since DAC is at 4.405 V. Piezo Error = -10.1 V.
17-03-18 03:54:30.284 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.1 um, Read 10 ADC samples: Avg = 29861 (-131.4 uncal um), Error = 0.8 uncal um, Median = 29860 (-131.4 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 29854 (-131.3 uncal um), Max = 29869 (-131.4 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 03:54:30.284 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29861, posNoise = 8, negNoise = 7
17-03-18 03:54:30.284 -07 000000610 INF: Z Motor: After move to -0.132145, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:54:30.284 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-18 03:54:30.284 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:54:30.284 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:54:30.284 -07 000000611 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:54:30.284 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:54:30.284 -07 000000447 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 03:54:30.284 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:54:30.284 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 03:54:30.284 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 03:54:30.284 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 03:54:30.284 -07 000000447 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 03:54:30.284 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 03:54:30.284 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 03:54:30.294 -07 000000447 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 03:54:30.294 -07 000000447 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 03:54:30.294 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-18 03:54:30.294 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 03:54:30.294 -07 000000447 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 03:54:30.304 -07 000000447 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 03:54:30.304 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 11 ms.
17-03-18 03:54:30.304 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 17 ms.
17-03-18 03:54:30.304 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 412 412 198 198 29044 150\n [Camera]
17-03-18 03:54:30.504 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 03:54:30.924 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 604
17-03-18 03:54:30.924 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 604
17-03-18 03:54:30.924 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:54:30.924 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 604
17-03-18 03:54:30.924 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 604
17-03-18 03:54:30.924 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:54:30.924 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) start.
17-03-18 03:54:30.924 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:54:30.934 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:54:30.934 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) start.
17-03-18 03:54:31.114 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29044 800
17-03-18 03:54:31.264 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning grn on 947
17-03-18 03:54:31.304 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) end. Duration was 374 ms.
17-03-18 03:54:31.304 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-18 03:54:31.304 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:54:31.304 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) end. Duration was 380 ms.
17-03-18 03:54:31.304 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-18 03:54:31.304 -07 000000474 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:54:31.314 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 03:54:31.314 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 03:54:31.314 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-18 03:54:31.314 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-18 03:54:31.464 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1145
17-03-18 03:54:31.464 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1145
17-03-18 03:54:31.464 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:54:31.574 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1145
17-03-18 03:54:31.574 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1145
17-03-18 03:54:31.574 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:54:31.574 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:54:31.574 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-18 03:54:31.574 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:54:31.574 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2334002848, 0x0, 418435064) start.
17-03-18 03:54:31.614 -07 000000611 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 03:54:31.614 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 117. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1690, R2=1759, Total=3449. Warn if over 250 bubbles per interval.
17-03-18 03:54:31.654 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP 1337
17-03-18 03:54:31.654 -07 000000590 INF: FPGA: Recv CAMDBLSNAP
17-03-18 03:54:31.654 -07 000000610 INF: FPGA: 'CAMDBLSNAP 412 412 198 198 29044 150' command took 2 ms to send, 1344 ms to get response, and 1348 ms overall
17-03-18 03:54:31.654 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 03:54:31.654 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 4 at Y-position 61.5634765625, Z-Position -0.132156750776259. ------
17-03-18 03:54:31.654 -07 000000618 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 03:54:31.654 -07 000000625 INF: Y Motor: MoveYZ optimized starting. Moving Y to 62.4026 mm, moving Z to -0.13860 mm
17-03-18 03:54:31.654 -07 000000625 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 03:54:31.664 -07 000000437 INF: FPGA: Recv FOCMRRCUR 
17-03-18 03:54:31.664 -07 000000618 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 03:54:31.664 -07 000000512 INF: Y Motor: Entering MoveAbsStepped (target = 99844 steps, sync = True, waitForSettling = True)
17-03-18 03:54:31.664 -07 000000512 INF: Y Motor: Moving to 62.4026 mm, started at 61.5635 mm, delta = 0.8391 mm
17-03-18 03:54:31.664 -07 000000618 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 03:54:31.664 -07 000000611 INF: Z Motor: Entering MoveAbsStepped (DAC = 30277, sync = True, waitForSettling = False)
17-03-18 03:54:31.664 -07 000000611 INF: Z Motor: Moving to -0.138599 mm, started at -0.132157 mm, distance = -6.44 um
17-03-18 03:54:31.674 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:54:31.674 -07 000000474 INF: FPGA: Recv YRDPOS 126082
17-03-18 03:54:31.684 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-18 03:54:31.684 -07 000000512 INF: Y Motor: Encoder = 126082 = motor step 98501.6 = 61.5635 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:54:31.684 -07 000000512 INF: Y Motor: Last commanded position = 61.5726 mm (98516.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 03:54:31.684 -07 000000512 INF: Y Motor: Moving 1343 steps-19
17-03-18 03:54:31.684 -07 000000611 INF: FPGA: Xmit ZDACW 30277\n [Z Motor]
17-03-18 03:54:31.684 -07 000000474 INF: FPGA: Recv ZDACW
17-03-18 03:54:31.694 -07 000000611 INF: FPGA: 'ZDACW 30277' command took 4 ms to send, 0 ms to get response, and 25 ms overall
17-03-18 03:54:31.694 -07 000000611 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:54:31.694 -07 000000590 INF: FPGA: Recv ZDACR 30277
17-03-18 03:54:31.704 -07 000000611 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:31.704 -07 000000611 INF: Z Motor: MoveAbsStepped took 36 ms (did NOT wait for settling yet))
17-03-18 03:54:31.704 -07 000000512 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 03:54:31.864 -07 000000437 INF: FPGA: Recv FOCMRRFOC
17-03-18 03:54:31.864 -07 000000618 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 195 ms to get response, and 202 ms overall
17-03-18 03:54:31.904 -07 000000590 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 118, FrontChillerTemperature: 4.001704,
17-03-18 03:54:31.974 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 397 ms.
17-03-18 03:54:31.974 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 03:54:31.974 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:54:31.974 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2334002848, 0x0, 418435064) end. Duration was 397 ms.
17-03-18 03:54:31.974 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 03:54:31.974 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:54:31.984 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 03:54:31.984 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 518 ms.
17-03-18 03:54:31.984 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 03:54:31.984 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 417 ms.
17-03-18 03:54:32.074 -07 000000611 INF: FPGA: Recv YMVTILE
17-03-18 03:54:32.074 -07 000000512 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 394 ms overall
17-03-18 03:54:32.124 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:54:32.124 -07 000000447 INF: FPGA: Recv YRDPOS 127785
17-03-18 03:54:32.134 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 03:54:32.134 -07 000000512 INF: Y Motor: Encoder = 127785 = motor step 99832.0 = 62.3950 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:54:32.134 -07 000000512 INF: Y Motor: Position error before settling (table move) = -16 encoder counts (-0.008 mm)
17-03-18 03:54:32.134 -07 000000512 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 395 ms, distance = 0.839 mm, average velocity = 2.124 mm/sec
17-03-18 03:54:33.084 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:54:33.084 -07 000000618 INF: FPGA: Recv YRDPOS 127785
17-03-18 03:54:33.094 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:54:33.094 -07 000000512 INF: Y Motor: Encoder = 127785 = motor step 99832.0 = 62.3950 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:54:33.114 -07 000000512 INF: Y Motor: After move to 62.402607, error = -0.007587, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 03:54:33.114 -07 000000512 INF: Y Motor: Position error after settling (table move) = -16 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 03:54:33.114 -07 000000512 INF: Y Motor: Moved to 62.3950 after 1455 ms (table move)
17-03-18 03:54:33.124 -07 000000625 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138599 mm (DAC = 30277)
17-03-18 03:54:33.124 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:33.124 -07 000000501 INF: FPGA: Recv ZSGSRD 30863
17-03-18 03:54:33.134 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 03:54:33.134 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:33.134 -07 000000590 INF: FPGA: Recv ZSGSRD 30873
17-03-18 03:54:33.144 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:33.144 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:33.144 -07 000000474 INF: FPGA: Recv ZSGSRD 30868
17-03-18 03:54:33.154 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:33.154 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:33.154 -07 000000618 INF: FPGA: Recv ZSGSRD 30863
17-03-18 03:54:33.164 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:33.164 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:33.164 -07 000000437 INF: FPGA: Recv ZSGSRD 30861
17-03-18 03:54:33.174 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:33.174 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:33.174 -07 000000618 INF: FPGA: Recv ZSGSRD 30864
17-03-18 03:54:33.184 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:33.184 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:33.184 -07 000000437 INF: FPGA: Recv ZSGSRD 30863
17-03-18 03:54:33.194 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:33.194 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:33.194 -07 000000611 INF: FPGA: Recv ZSGSRD 30862
17-03-18 03:54:33.204 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:33.204 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:33.204 -07 000000501 INF: FPGA: Recv ZSGSRD 30868
17-03-18 03:54:33.214 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:33.214 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:33.214 -07 000000512 INF: FPGA: Recv ZSGSRD 30863
17-03-18 03:54:33.224 -07 000000625 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:33.224 -07 000000625 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:54:33.224 -07 000000611 INF: FPGA: Recv ZPIEZORD 26615
17-03-18 03:54:33.234 -07 000000625 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:33.234 -07 000000625 INF: Z Motor: Piezo is near 36.9 V (nominally 0 to 100 V), expect near 46.2 V, since DAC is at 4.620 V. Piezo Error = -9.3 V.
17-03-18 03:54:33.234 -07 000000625 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.6 um, Read 10 ADC samples: Avg = 30865 (-137.8 uncal um), Error = 0.8 uncal um, Median = 30863 (-137.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 30861 (-137.8 uncal um), Max = 30873 (-137.9 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 03:54:33.234 -07 000000625 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30865, posNoise = 8, negNoise = 4
17-03-18 03:54:33.234 -07 000000625 INF: Z Motor: After move to -0.138599, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:54:33.234 -07 000000625 INF: Z Motor: Settle wait time = 1458 ms, measure time = 108 ms (allowed 150 ms), total time = 1566 ms
17-03-18 03:54:33.234 -07 000000625 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-18 03:54:33.284 -07 000000625 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1620 ms
17-03-18 03:54:33.284 -07 000000625 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 03:54:33.284 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:54:33.284 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:54:33.284 -07 000000474 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:54:33.284 -07 000000447 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:54:33.284 -07 000000611 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 03:54:33.284 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:54:33.284 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 03:54:33.284 -07 000000611 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 03:54:33.294 -07 000000611 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 03:54:33.294 -07 000000611 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 03:54:33.304 -07 000000611 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 03:54:33.304 -07 000000611 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-18 03:54:33.304 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 03:54:33.354 -07 000000618 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 03:54:33.654 -07 000000590 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 03:54:33.654 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 03:54:33.654 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 03:54:33.654 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 03:54:33.694 -07 000000437 INF: FPGA: Recv @CAMSNAP 380
17-03-18 03:54:33.694 -07 000000618 INF: FPGA: Recv CAMSNAP
17-03-18 03:54:33.694 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 382 ms to get response, and 385 ms overall
17-03-18 03:54:33.774 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 03:54:33.774 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:54:33.774 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 03:54:33.774 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 03:54:33.794 -07 000000474 INF: Autofocus start
17-03-18 03:54:33.794 -07 000000474 INF: MeasureProfile start
17-03-18 03:54:33.794 -07 000000590 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 03:54:33.794 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-18 03:54:33.804 -07 000000590 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 03:54:33.804 -07 000000590 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 03:54:33.814 -07 000000474 INF: MeasureProfile done
17-03-18 03:54:33.814 -07 000000474 INF: X=-16  Z correction [um]=-0.08128808
17-03-18 03:54:33.814 -07 000000474 INF: Autofocus finished
17-03-18 03:54:34.004 -07 000000502 INF: FPGA: Recv FOCMRRIMG
17-03-18 03:54:34.004 -07 000000590 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 03:54:34.004 -07 000000610 INF: ------------ Scan Snapping tile 4 at Y-position 62.39501953125, Z-position -0.138606659766587. ----------
17-03-18 03:54:34.004 -07 000000610 INF: Cycle	118	Tile	4	Exposure Settings		A	412	G	198	T	198	C	412
17-03-18 03:54:34.014 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28772, sync = True, waitForSettling = True)
17-03-18 03:54:34.014 -07 000000610 INF: Z Motor: Moving to -0.131710 mm, started at -0.138607 mm, distance = 6.90 um
17-03-18 03:54:34.014 -07 000000610 INF: FPGA: Xmit ZDACW 28772\n [Z Motor]
17-03-18 03:54:34.014 -07 000000501 INF: FPGA: Recv ZDACW
17-03-18 03:54:34.024 -07 000000610 INF: FPGA: 'ZDACW 28772' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:34.024 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:54:34.024 -07 000000437 INF: FPGA: Recv ZDACR 28772
17-03-18 03:54:34.034 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:34.034 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 03:54:34.184 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:34.184 -07 000000462 INF: FPGA: Recv ZSGSRD 29791
17-03-18 03:54:34.194 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:34.194 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:34.194 -07 000000437 INF: FPGA: Recv ZSGSRD 29794
17-03-18 03:54:34.204 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:34.204 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:34.204 -07 000000462 INF: FPGA: Recv ZSGSRD 29789
17-03-18 03:54:34.214 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:34.214 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:34.214 -07 000000618 INF: FPGA: Recv ZSGSRD 29798
17-03-18 03:54:34.224 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:34.224 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:34.224 -07 000000462 INF: FPGA: Recv ZSGSRD 29798
17-03-18 03:54:34.234 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:34.234 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:34.234 -07 000000437 INF: FPGA: Recv ZSGSRD 29793
17-03-18 03:54:34.244 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:34.244 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:34.244 -07 000000611 INF: FPGA: Recv ZSGSRD 29791
17-03-18 03:54:34.254 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:34.254 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:34.254 -07 000000462 INF: FPGA: Recv ZSGSRD 29790
17-03-18 03:54:34.264 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:34.264 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:34.264 -07 000000611 INF: FPGA: Recv ZSGSRD 29793
17-03-18 03:54:34.274 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:34.274 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:34.274 -07 000000437 INF: FPGA: Recv ZSGSRD 29798
17-03-18 03:54:34.284 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:34.284 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:54:34.284 -07 000000618 INF: FPGA: Recv ZPIEZORD 25245
17-03-18 03:54:34.294 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:34.294 -07 000000610 INF: Z Motor: Piezo is near 33.9 V (nominally 0 to 100 V), expect near 43.9 V, since DAC is at 4.390 V. Piezo Error = -10.0 V.
17-03-18 03:54:34.294 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.7 um, Read 10 ADC samples: Avg = 29794 (-130.9 uncal um), Error = 0.8 uncal um, Median = 29793 (-130.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29789 (-130.9 uncal um), Max = 29798 (-131.0 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 03:54:34.294 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29794, posNoise = 4, negNoise = 5
17-03-18 03:54:34.294 -07 000000610 INF: Z Motor: After move to -0.131710, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:54:34.294 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 03:54:34.294 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:54:34.294 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:54:34.294 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:54:34.294 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 03:54:34.294 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 03:54:34.294 -07 000000474 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:54:34.294 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 03:54:34.294 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:54:34.294 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 03:54:34.294 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 03:54:34.294 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 03:54:34.294 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 03:54:34.304 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-18 03:54:34.304 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 03:54:34.304 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 03:54:34.304 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 03:54:34.314 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 12 ms.
17-03-18 03:54:34.314 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 18 ms.
17-03-18 03:54:34.314 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 13 ms.
17-03-18 03:54:34.314 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 19 ms.
17-03-18 03:54:34.314 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 412 412 198 198 28949 150\n [Camera]
17-03-18 03:54:34.514 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning red on 193
17-03-18 03:54:34.924 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 605
17-03-18 03:54:34.934 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 605
17-03-18 03:54:34.934 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:54:34.934 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 605
17-03-18 03:54:34.934 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 605
17-03-18 03:54:34.934 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:54:34.934 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:54:34.934 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) start.
17-03-18 03:54:34.944 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:54:34.944 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) start.
17-03-18 03:54:35.124 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28949 797
17-03-18 03:54:35.274 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning grn on 947
17-03-18 03:54:35.314 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) end. Duration was 370 ms.
17-03-18 03:54:35.314 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 371 ms.
17-03-18 03:54:35.314 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:54:35.314 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) end. Duration was 374 ms.
17-03-18 03:54:35.314 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 375 ms.
17-03-18 03:54:35.314 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:54:35.314 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 03:54:35.314 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 03:54:35.314 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-18 03:54:35.324 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-18 03:54:35.464 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1145
17-03-18 03:54:35.474 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1145
17-03-18 03:54:35.474 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:54:35.584 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1145
17-03-18 03:54:35.584 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1145
17-03-18 03:54:35.584 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:54:35.584 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:54:35.584 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-18 03:54:35.584 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:54:35.584 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2334002848, 0x0, 418435064) start.
17-03-18 03:54:35.664 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP 1338
17-03-18 03:54:35.664 -07 000000502 INF: FPGA: Recv CAMDBLSNAP
17-03-18 03:54:35.664 -07 000000610 INF: FPGA: 'CAMDBLSNAP 412 412 198 198 28949 150' command took 2 ms to send, 1341 ms to get response, and 1345 ms overall
17-03-18 03:54:35.664 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 03:54:35.664 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 5 at Y-position 62.39501953125, Z-Position -0.131726328562761. ------
17-03-18 03:54:35.664 -07 000000611 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 03:54:35.664 -07 000000512 INF: Y Motor: MoveYZ optimized starting. Moving Y to 63.2326 mm, moving Z to -0.13842 mm
17-03-18 03:54:35.664 -07 000000512 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 03:54:35.664 -07 000000618 INF: Y Motor: Entering MoveAbsStepped (target = 101172 steps, sync = True, waitForSettling = True)
17-03-18 03:54:35.664 -07 000000618 INF: Y Motor: Moving to 63.2326 mm, started at 62.3950 mm, delta = 0.8376 mm
17-03-18 03:54:35.664 -07 000000474 INF: Z Motor: Entering MoveAbsStepped (DAC = 30237, sync = True, waitForSettling = False)
17-03-18 03:54:35.664 -07 000000474 INF: Z Motor: Moving to -0.138416 mm, started at -0.131726 mm, distance = -6.69 um
17-03-18 03:54:35.674 -07 000000590 INF: FPGA: Recv FOCMRRCUR 
17-03-18 03:54:35.674 -07 000000611 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 03:54:35.674 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:54:35.674 -07 000000447 INF: FPGA: Recv YRDPOS 127785
17-03-18 03:54:35.684 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:54:35.684 -07 000000474 INF: FPGA: Xmit ZDACW 30237\n [Z Motor]
17-03-18 03:54:35.684 -07 000000618 INF: Y Motor: Encoder = 127785 = motor step 99832.0 = 62.3950 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:54:35.684 -07 000000618 INF: Y Motor: Last commanded position = 62.4026 mm (99844.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 03:54:35.684 -07 000000618 INF: Y Motor: Moving 1340 steps-16
17-03-18 03:54:35.684 -07 000000608 INF: FPGA: Recv ZDACW
17-03-18 03:54:35.694 -07 000000611 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 03:54:35.694 -07 000000474 INF: FPGA: 'ZDACW 30237' command took 0 ms to send, 0 ms to get response, and 20 ms overall
17-03-18 03:54:35.704 -07 000000618 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 03:54:35.714 -07 000000474 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:54:35.714 -07 000000590 INF: FPGA: Recv ZDACR 30237
17-03-18 03:54:35.724 -07 000000474 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-18 03:54:35.724 -07 000000474 INF: Z Motor: MoveAbsStepped took 50 ms (did NOT wait for settling yet))
17-03-18 03:54:35.894 -07 000000502 INF: FPGA: Recv FOCMRRFOC
17-03-18 03:54:35.894 -07 000000611 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 03:54:35.974 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2334002848, 0x0, 418435064) end. Duration was 383 ms.
17-03-18 03:54:35.974 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 383 ms.
17-03-18 03:54:35.974 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:54:35.974 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:54:35.974 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 389 ms.
17-03-18 03:54:35.974 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-18 03:54:35.974 -07 000000625 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:54:35.984 -07 000000625 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:54:35.984 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 510 ms.
17-03-18 03:54:35.984 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 03:54:36.074 -07 000000447 INF: FPGA: Recv YMVTILE
17-03-18 03:54:36.074 -07 000000618 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 03:54:36.124 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:54:36.124 -07 000000012 INF: FPGA: Recv YRDPOS 129481
17-03-18 03:54:36.134 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 03:54:36.134 -07 000000618 INF: Y Motor: Encoder = 129481 = motor step 101157.0 = 63.2231 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:54:36.134 -07 000000618 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm)
17-03-18 03:54:36.134 -07 000000618 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.838 mm, average velocity = 2.110 mm/sec
17-03-18 03:54:36.614 -07 000000474 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 03:54:36.614 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 117. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1690, R2=1759, Total=3449. Warn if over 250 bubbles per interval.
17-03-18 03:54:37.084 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:54:37.084 -07 000000611 INF: FPGA: Recv YRDPOS 129481
17-03-18 03:54:37.094 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:54:37.094 -07 000000618 INF: Y Motor: Encoder = 129481 = motor step 101157.0 = 63.2231 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:54:37.124 -07 000000618 INF: Y Motor: After move to 63.232609, error = -0.009464, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 03:54:37.124 -07 000000618 INF: Y Motor: Position error after settling (table move) = -19 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 03:54:37.124 -07 000000618 INF: Y Motor: Moved to 63.2231 after 1450 ms (table move)
17-03-18 03:54:37.124 -07 000000512 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138416 mm (DAC = 30237)
17-03-18 03:54:37.124 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:37.124 -07 000000502 INF: FPGA: Recv ZSGSRD 30830
17-03-18 03:54:37.134 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 03:54:37.134 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:37.134 -07 000000590 INF: FPGA: Recv ZSGSRD 30834
17-03-18 03:54:37.144 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:37.144 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:37.144 -07 000000618 INF: FPGA: Recv ZSGSRD 30837
17-03-18 03:54:37.154 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:37.154 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:37.154 -07 000000611 INF: FPGA: Recv ZSGSRD 30842
17-03-18 03:54:37.164 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:37.164 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:37.164 -07 000000462 INF: FPGA: Recv ZSGSRD 30835
17-03-18 03:54:37.174 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:37.174 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:37.174 -07 000000447 INF: FPGA: Recv ZSGSRD 30839
17-03-18 03:54:37.184 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:37.184 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:37.184 -07 000000012 INF: FPGA: Recv ZSGSRD 30844
17-03-18 03:54:37.194 -07 000000512 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:37.194 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:37.194 -07 000000462 INF: FPGA: Recv ZSGSRD 30832
17-03-18 03:54:37.204 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:37.204 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:37.204 -07 000000611 INF: FPGA: Recv ZSGSRD 30836
17-03-18 03:54:37.214 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:37.214 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:37.214 -07 000000618 INF: FPGA: Recv ZSGSRD 30841
17-03-18 03:54:37.224 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:37.224 -07 000000512 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:54:37.224 -07 000000474 INF: FPGA: Recv ZPIEZORD 26568
17-03-18 03:54:37.234 -07 000000512 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:37.234 -07 000000512 INF: Z Motor: Piezo is near 36.8 V (nominally 0 to 100 V), expect near 46.1 V, since DAC is at 4.614 V. Piezo Error = -9.4 V.
17-03-18 03:54:37.234 -07 000000512 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.4 um, Read 10 ADC samples: Avg = 30837 (-137.6 uncal um), Error = 0.8 uncal um, Median = 30836 (-137.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 30830 (-137.6 uncal um), Max = 30844 (-137.7 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 03:54:37.234 -07 000000512 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30837, posNoise = 7, negNoise = 7
17-03-18 03:54:37.234 -07 000000512 INF: Z Motor: After move to -0.138416, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:54:37.234 -07 000000512 INF: Z Motor: Settle wait time = 1453 ms, measure time = 107 ms (allowed 150 ms), total time = 1560 ms
17-03-18 03:54:37.234 -07 000000512 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-18 03:54:37.274 -07 000000447 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 118, FrontChillerTemperature: 4.011254,
17-03-18 03:54:37.284 -07 000000512 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1613 ms
17-03-18 03:54:37.284 -07 000000512 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 03:54:37.284 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:54:37.284 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:54:37.284 -07 000000474 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:54:37.284 -07 000000611 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:54:37.284 -07 000000012 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 03:54:37.284 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:54:37.294 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 03:54:37.294 -07 000000012 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 03:54:37.294 -07 000000012 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 03:54:37.294 -07 000000012 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 03:54:37.304 -07 000000012 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 03:54:37.304 -07 000000012 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 13 ms.
17-03-18 03:54:37.314 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 03:54:37.354 -07 000000462 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 03:54:37.654 -07 000000012 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 03:54:37.654 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 03:54:37.654 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 03:54:37.654 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 03:54:37.694 -07 000000618 INF: FPGA: Recv @CAMSNAP 380
17-03-18 03:54:37.694 -07 000000447 INF: FPGA: Recv CAMSNAP
17-03-18 03:54:37.694 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 392 ms overall
17-03-18 03:54:37.774 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 03:54:37.774 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:54:37.774 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 03:54:37.774 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 116 ms.
17-03-18 03:54:37.794 -07 000000012 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 03:54:37.794 -07 000000618 INF: Autofocus start
17-03-18 03:54:37.794 -07 000000618 INF: MeasureProfile start
17-03-18 03:54:37.794 -07 000000447 INF: FPGA: Recv FOCMRRCUR 
17-03-18 03:54:37.804 -07 000000012 INF: FPGA: 'FOCMRRCUR 80' command took 1 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 03:54:37.804 -07 000000012 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 03:54:37.804 -07 000000618 INF: MeasureProfile done
17-03-18 03:54:37.804 -07 000000618 INF: X=16  Z correction [um]=0.0530179
17-03-18 03:54:37.804 -07 000000618 INF: Autofocus finished
17-03-18 03:54:38.004 -07 000000611 INF: FPGA: Recv FOCMRRIMG
17-03-18 03:54:38.004 -07 000000012 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 03:54:38.004 -07 000000610 INF: ------------ Scan Snapping tile 5 at Y-position 63.22314453125, Z-position -0.138426781826618. ----------
17-03-18 03:54:38.004 -07 000000610 INF: Cycle	118	Tile	5	Exposure Settings		A	412	G	198	T	198	C	412
17-03-18 03:54:38.014 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28761, sync = True, waitForSettling = True)
17-03-18 03:54:38.014 -07 000000610 INF: Z Motor: Moving to -0.131659 mm, started at -0.138427 mm, distance = 6.77 um
17-03-18 03:54:38.014 -07 000000610 INF: FPGA: Xmit ZDACW 28761\n [Z Motor]
17-03-18 03:54:38.014 -07 000000512 INF: FPGA: Recv ZDACW
17-03-18 03:54:38.024 -07 000000610 INF: FPGA: 'ZDACW 28761' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 03:54:38.024 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:54:38.024 -07 000000462 INF: FPGA: Recv ZDACR 28761
17-03-18 03:54:38.034 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:38.034 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 03:54:38.184 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:38.184 -07 000000611 INF: FPGA: Recv ZSGSRD 29786
17-03-18 03:54:38.194 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:54:38.194 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:38.194 -07 000000012 INF: FPGA: Recv ZSGSRD 29785
17-03-18 03:54:38.204 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:38.204 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:38.204 -07 000000611 INF: FPGA: Recv ZSGSRD 29781
17-03-18 03:54:38.214 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:38.214 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:38.214 -07 000000462 INF: FPGA: Recv ZSGSRD 29788
17-03-18 03:54:38.224 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:38.224 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:38.224 -07 000000447 INF: FPGA: Recv ZSGSRD 29789
17-03-18 03:54:38.234 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:38.234 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:38.234 -07 000000012 INF: FPGA: Recv ZSGSRD 29784
17-03-18 03:54:38.244 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:38.244 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:38.244 -07 000000474 INF: FPGA: Recv ZSGSRD 29785
17-03-18 03:54:38.254 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:38.254 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:38.254 -07 000000608 INF: FPGA: Recv ZSGSRD 29784
17-03-18 03:54:38.264 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:38.264 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:38.264 -07 000000611 INF: FPGA: Recv ZSGSRD 29784
17-03-18 03:54:38.274 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:38.274 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:38.274 -07 000000512 INF: FPGA: Recv ZSGSRD 29786
17-03-18 03:54:38.284 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:38.284 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:54:38.284 -07 000000474 INF: FPGA: Recv ZPIEZORD 25223
17-03-18 03:54:38.294 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:38.294 -07 000000610 INF: Z Motor: Piezo is near 33.9 V (nominally 0 to 100 V), expect near 43.9 V, since DAC is at 4.389 V. Piezo Error = -10.0 V.
17-03-18 03:54:38.294 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.7 um, Read 10 ADC samples: Avg = 29785 (-130.9 uncal um), Error = 0.8 uncal um, Median = 29785 (-130.9 uncal um), StdDev = 2 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 29781 (-130.9 uncal um), Max = 29789 (-130.9 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 03:54:38.294 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29785, posNoise = 4, negNoise = 4
17-03-18 03:54:38.294 -07 000000610 INF: Z Motor: After move to -0.131659, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:54:38.294 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 03:54:38.294 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:54:38.294 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:54:38.294 -07 000000012 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:54:38.294 -07 000000608 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:54:38.294 -07 000000611 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 03:54:38.294 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:54:38.294 -07 000000474 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 03:54:38.294 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 03:54:38.294 -07 000000611 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 03:54:38.294 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 03:54:38.294 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-18 03:54:38.294 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 03:54:38.304 -07 000000611 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 03:54:38.304 -07 000000611 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 03:54:38.304 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 03:54:38.304 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 03:54:38.304 -07 000000611 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 03:54:38.304 -07 000000611 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 03:54:38.314 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 03:54:38.314 -07 000000474 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 03:54:38.314 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 412 412 198 198 28938 150\n [Camera]
17-03-18 03:54:38.514 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 03:54:38.924 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 604
17-03-18 03:54:38.924 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 604
17-03-18 03:54:38.924 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:54:38.924 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:54:38.924 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 604
17-03-18 03:54:38.924 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) start.
17-03-18 03:54:38.924 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 604
17-03-18 03:54:38.934 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:54:38.934 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:54:38.934 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) start.
17-03-18 03:54:39.114 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28938 799
17-03-18 03:54:39.264 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning grn on 947
17-03-18 03:54:39.304 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) end. Duration was 379 ms.
17-03-18 03:54:39.304 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-18 03:54:39.304 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:54:39.314 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) end. Duration was 376 ms.
17-03-18 03:54:39.314 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-18 03:54:39.314 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:54:39.314 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:54:39.314 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-18 03:54:39.314 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:54:39.324 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-18 03:54:39.464 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1145
17-03-18 03:54:39.464 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1145
17-03-18 03:54:39.574 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1145
17-03-18 03:54:39.574 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1145
17-03-18 03:54:39.574 -07 000000611 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:54:39.574 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:54:39.574 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:54:39.574 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 2334002848, 0x0, 418435064) start.
17-03-18 03:54:39.584 -07 000000611 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:54:39.584 -07 000000611 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-18 03:54:39.654 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP 1337
17-03-18 03:54:39.654 -07 000000591 INF: FPGA: Recv CAMDBLSNAP
17-03-18 03:54:39.654 -07 000000610 INF: FPGA: 'CAMDBLSNAP 412 412 198 198 28938 150' command took 2 ms to send, 1336 ms to get response, and 1345 ms overall
17-03-18 03:54:39.654 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 03:54:39.654 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 6 at Y-position 63.22314453125, Z-Position -0.131668510653485. ------
17-03-18 03:54:39.664 -07 000000590 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 03:54:39.664 -07 000000447 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.0626 mm, moving Z to -0.13777 mm
17-03-18 03:54:39.664 -07 000000447 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 03:54:39.664 -07 000000462 INF: Y Motor: Entering MoveAbsStepped (target = 102500 steps, sync = True, waitForSettling = True)
17-03-18 03:54:39.664 -07 000000462 INF: Y Motor: Moving to 64.0626 mm, started at 63.2231 mm, delta = 0.8395 mm
17-03-18 03:54:39.664 -07 000000512 INF: FPGA: Recv FOCMRRCUR 
17-03-18 03:54:39.664 -07 000000591 INF: Z Motor: Entering MoveAbsStepped (DAC = 30096, sync = True, waitForSettling = False)
17-03-18 03:54:39.664 -07 000000591 INF: Z Motor: Moving to -0.137771 mm, started at -0.131669 mm, distance = -6.10 um
17-03-18 03:54:39.674 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:54:39.674 -07 000000590 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 03:54:39.674 -07 000000618 INF: FPGA: Recv YRDPOS 129482
17-03-18 03:54:39.684 -07 000000590 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 03:54:39.684 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-18 03:54:39.684 -07 000000462 INF: Y Motor: Encoder = 129482 = motor step 101157.8 = 63.2236 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:54:39.684 -07 000000462 INF: Y Motor: Last commanded position = 63.2326 mm (101172.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 03:54:39.684 -07 000000462 INF: Y Motor: Moving 1342 steps-19
17-03-18 03:54:39.694 -07 000000591 INF: FPGA: Xmit ZDACW 30096\n [Z Motor]
17-03-18 03:54:39.694 -07 000000512 INF: FPGA: Recv ZDACW
17-03-18 03:54:39.704 -07 000000591 INF: FPGA: 'ZDACW 30096' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-18 03:54:39.704 -07 000000462 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 03:54:39.714 -07 000000591 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:54:39.714 -07 000000512 INF: FPGA: Recv ZDACR 30096
17-03-18 03:54:39.724 -07 000000591 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 03:54:39.724 -07 000000591 INF: Z Motor: MoveAbsStepped took 50 ms (did NOT wait for settling yet))
17-03-18 03:54:39.884 -07 000000608 INF: FPGA: Recv FOCMRRFOC
17-03-18 03:54:39.884 -07 000000590 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 211 ms overall
17-03-18 03:54:39.974 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 2334002848, 0x0, 418435064) end. Duration was 391 ms.
17-03-18 03:54:39.974 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-18 03:54:39.974 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:54:39.974 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:54:39.974 -07 000000611 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 393 ms.
17-03-18 03:54:39.974 -07 000000611 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-18 03:54:39.974 -07 000000611 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:54:39.974 -07 000000611 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:54:39.974 -07 000000611 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-18 03:54:39.984 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-18 03:54:40.074 -07 000000474 INF: FPGA: Recv YMVTILE
17-03-18 03:54:40.074 -07 000000462 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 394 ms overall
17-03-18 03:54:40.124 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:54:40.134 -07 000000501 INF: FPGA: Recv YRDPOS 131187
17-03-18 03:54:40.134 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 03:54:40.134 -07 000000462 INF: Y Motor: Encoder = 131187 = motor step 102489.8 = 64.0562 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:54:40.134 -07 000000462 INF: Y Motor: Position error before settling (table move) = -13 encoder counts (-0.006 mm)
17-03-18 03:54:40.134 -07 000000462 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.839 mm, average velocity = 2.131 mm/sec
17-03-18 03:54:41.084 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:54:41.084 -07 000000625 INF: FPGA: Recv YRDPOS 131187
17-03-18 03:54:41.094 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:54:41.094 -07 000000462 INF: Y Motor: Encoder = 131187 = motor step 102489.8 = 64.0562 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:54:41.114 -07 000000462 INF: Y Motor: After move to 64.062607, error = -0.006454, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 03:54:41.114 -07 000000462 INF: Y Motor: Position error after settling (table move) = -13 encoder counts (-0.006 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 03:54:41.114 -07 000000462 INF: Y Motor: Moved to 64.0562 after 1452 ms (table move)
17-03-18 03:54:41.124 -07 000000447 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137771 mm (DAC = 30096)
17-03-18 03:54:41.124 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:41.124 -07 000000474 INF: FPGA: Recv ZSGSRD 30735
17-03-18 03:54:41.134 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 03:54:41.134 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:41.134 -07 000000608 INF: FPGA: Recv ZSGSRD 30740
17-03-18 03:54:41.144 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:41.144 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:41.144 -07 000000502 INF: FPGA: Recv ZSGSRD 30735
17-03-18 03:54:41.154 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:41.154 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:41.154 -07 000000437 INF: FPGA: Recv ZSGSRD 30735
17-03-18 03:54:41.164 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:41.164 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:41.164 -07 000000501 INF: FPGA: Recv ZSGSRD 30737
17-03-18 03:54:41.174 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:41.174 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:41.174 -07 000000012 INF: FPGA: Recv ZSGSRD 30736
17-03-18 03:54:41.184 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:41.184 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:41.184 -07 000000501 INF: FPGA: Recv ZSGSRD 30733
17-03-18 03:54:41.194 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:41.194 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:41.194 -07 000000608 INF: FPGA: Recv ZSGSRD 30736
17-03-18 03:54:41.204 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:41.204 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:41.204 -07 000000012 INF: FPGA: Recv ZSGSRD 30739
17-03-18 03:54:41.214 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:41.214 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:41.214 -07 000000591 INF: FPGA: Recv ZSGSRD 30738
17-03-18 03:54:41.224 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:41.224 -07 000000447 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:54:41.224 -07 000000502 INF: FPGA: Recv ZPIEZORD 26508
17-03-18 03:54:41.234 -07 000000447 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:41.234 -07 000000447 INF: Z Motor: Piezo is near 36.6 V (nominally 0 to 100 V), expect near 45.9 V, since DAC is at 4.592 V. Piezo Error = -9.3 V.
17-03-18 03:54:41.234 -07 000000447 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.8 um, Read 10 ADC samples: Avg = 30736 (-137.0 uncal um), Error = 0.8 uncal um, Median = 30736 (-137.0 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 30733 (-137.0 uncal um), Max = 30740 (-137.0 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 03:54:41.234 -07 000000447 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30736, posNoise = 4, negNoise = 3
17-03-18 03:54:41.234 -07 000000447 INF: Z Motor: After move to -0.137771, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:54:41.234 -07 000000447 INF: Z Motor: Settle wait time = 1452 ms, measure time = 108 ms (allowed 150 ms), total time = 1560 ms
17-03-18 03:54:41.234 -07 000000447 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-18 03:54:41.284 -07 000000447 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1616 ms
17-03-18 03:54:41.284 -07 000000447 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 03:54:41.284 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:54:41.284 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:54:41.284 -07 000000625 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:54:41.284 -07 000000437 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:54:41.284 -07 000000590 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 03:54:41.284 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:54:41.284 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 03:54:41.294 -07 000000590 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 03:54:41.294 -07 000000590 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 03:54:41.294 -07 000000590 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 03:54:41.304 -07 000000590 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-18 03:54:41.304 -07 000000590 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-18 03:54:41.304 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 03:54:41.354 -07 000000447 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 03:54:41.614 -07 000000625 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 03:54:41.614 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 117. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1690, R2=1759, Total=3449. Warn if over 250 bubbles per interval.
17-03-18 03:54:41.654 -07 000000590 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 03:54:41.654 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 03:54:41.654 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 03:54:41.654 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 03:54:41.694 -07 000000474 INF: FPGA: Recv @CAMSNAP 380
17-03-18 03:54:41.694 -07 000000591 INF: FPGA: Recv CAMSNAP
17-03-18 03:54:41.694 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 382 ms to get response, and 384 ms overall
17-03-18 03:54:41.774 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 117 ms.
17-03-18 03:54:41.774 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:54:41.774 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 03:54:41.774 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 120 ms.
17-03-18 03:54:41.794 -07 000000590 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 03:54:41.794 -07 000000501 INF: Autofocus start
17-03-18 03:54:41.794 -07 000000501 INF: MeasureProfile start
17-03-18 03:54:41.794 -07 000000512 INF: FPGA: Recv FOCMRRCUR 
17-03-18 03:54:41.804 -07 000000590 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 03:54:41.804 -07 000000590 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 03:54:41.814 -07 000000501 INF: MeasureProfile done
17-03-18 03:54:41.814 -07 000000501 INF: X=10  Z correction [um]=0.02415557
17-03-18 03:54:41.814 -07 000000501 INF: Autofocus finished
17-03-18 03:54:42.004 -07 000000608 INF: FPGA: Recv FOCMRRIMG
17-03-18 03:54:42.004 -07 000000590 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 199 ms to get response, and 208 ms overall
17-03-18 03:54:42.014 -07 000000610 INF: ------------ Scan Snapping tile 6 at Y-position 64.05615234375, Z-position -0.1377779364003. ----------
17-03-18 03:54:42.014 -07 000000610 INF: Cycle	118	Tile	6	Exposure Settings		A	412	G	198	T	198	C	412
17-03-18 03:54:42.014 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28614, sync = True, waitForSettling = True)
17-03-18 03:54:42.014 -07 000000610 INF: Z Motor: Moving to -0.130986 mm, started at -0.137778 mm, distance = 6.79 um
17-03-18 03:54:42.014 -07 000000610 INF: FPGA: Xmit ZDACW 28614\n [Z Motor]
17-03-18 03:54:42.024 -07 000000608 INF: FPGA: Recv ZDACW
17-03-18 03:54:42.024 -07 000000610 INF: FPGA: 'ZDACW 28614' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-18 03:54:42.024 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:54:42.024 -07 000000618 INF: FPGA: Recv ZDACR 28614
17-03-18 03:54:42.034 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 03:54:42.034 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 03:54:42.184 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:42.184 -07 000000611 INF: FPGA: Recv ZSGSRD 29677
17-03-18 03:54:42.194 -07 000000610 INF: FPGA: 'ZSGSRD' command took 5 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:54:42.194 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:42.194 -07 000000590 INF: FPGA: Recv ZSGSRD 29685
17-03-18 03:54:42.204 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:42.204 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:42.204 -07 000000462 INF: FPGA: Recv ZSGSRD 29675
17-03-18 03:54:42.214 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:42.214 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:42.214 -07 000000591 INF: FPGA: Recv ZSGSRD 29678
17-03-18 03:54:42.224 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:42.224 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:42.224 -07 000000474 INF: FPGA: Recv ZSGSRD 29682
17-03-18 03:54:42.234 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:42.234 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:42.234 -07 000000501 INF: FPGA: Recv ZSGSRD 29677
17-03-18 03:54:42.244 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:42.244 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:42.244 -07 000000462 INF: FPGA: Recv ZSGSRD 29679
17-03-18 03:54:42.254 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:42.254 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:42.254 -07 000000512 INF: FPGA: Recv ZSGSRD 29680
17-03-18 03:54:42.264 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:42.264 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:42.264 -07 000000447 INF: FPGA: Recv ZSGSRD 29683
17-03-18 03:54:42.274 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:42.274 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:42.274 -07 000000590 INF: FPGA: Recv ZSGSRD 29683
17-03-18 03:54:42.284 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:42.284 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:54:42.284 -07 000000608 INF: FPGA: Recv ZPIEZORD 25130
17-03-18 03:54:42.294 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:42.294 -07 000000610 INF: Z Motor: Piezo is near 33.7 V (nominally 0 to 100 V), expect near 43.7 V, since DAC is at 4.366 V. Piezo Error = -10.0 V.
17-03-18 03:54:42.294 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.0 um, Read 10 ADC samples: Avg = 29680 (-130.2 uncal um), Error = 0.8 uncal um, Median = 29680 (-130.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29675 (-130.2 uncal um), Max = 29685 (-130.2 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 03:54:42.294 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29680, posNoise = 5, negNoise = 5
17-03-18 03:54:42.294 -07 000000610 INF: Z Motor: After move to -0.130986, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:54:42.294 -07 000000610 INF: Z Motor: MoveAbsStepped took 272 ms)
17-03-18 03:54:42.294 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:54:42.294 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:54:42.294 -07 000000590 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:54:42.294 -07 000000625 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:54:42.294 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 03:54:42.294 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 03:54:42.294 -07 000000474 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 03:54:42.294 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:54:42.294 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 03:54:42.294 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 03:54:42.294 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 03:54:42.294 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 03:54:42.304 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 03:54:42.304 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 03:54:42.304 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 03:54:42.304 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 03:54:42.314 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 03:54:42.314 -07 000000474 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 03:54:42.314 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 03:54:42.314 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 03:54:42.334 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 412 412 198 198 28791 150\n [Camera]
17-03-18 03:54:42.534 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning red on 193
17-03-18 03:54:42.644 -07 000000611 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 118, FrontChillerTemperature: 3.988112,
17-03-18 03:54:42.944 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 604
17-03-18 03:54:42.944 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 604
17-03-18 03:54:42.944 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:54:42.944 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 604
17-03-18 03:54:42.944 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 604
17-03-18 03:54:42.944 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:54:42.944 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:54:42.944 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) start.
17-03-18 03:54:42.954 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:54:42.954 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) start.
17-03-18 03:54:43.134 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28791 797
17-03-18 03:54:43.284 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning grn on 947
17-03-18 03:54:43.324 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) end. Duration was 373 ms.
17-03-18 03:54:43.434 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 487 ms.
17-03-18 03:54:43.434 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:54:43.434 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) end. Duration was 370 ms.
17-03-18 03:54:43.434 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 485 ms.
17-03-18 03:54:43.434 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:54:43.444 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 03:54:43.444 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 497 ms.
17-03-18 03:54:43.444 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 03:54:43.444 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 502 ms.
17-03-18 03:54:43.484 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1145
17-03-18 03:54:43.484 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1145
17-03-18 03:54:43.484 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:54:43.484 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1145
17-03-18 03:54:43.484 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1145
17-03-18 03:54:43.484 -07 000000611 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:54:43.494 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:54:43.494 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-18 03:54:43.494 -07 000000611 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:54:43.494 -07 000000611 INF: Camera: sBCa_ReadImage(785074704, 2334002848, 0x0, 418435064) start.
17-03-18 03:54:43.674 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP 1337
17-03-18 03:54:43.674 -07 000000590 INF: FPGA: Recv CAMDBLSNAP
17-03-18 03:54:43.674 -07 000000610 INF: FPGA: 'CAMDBLSNAP 412 412 198 198 28791 150' command took 2 ms to send, 1335 ms to get response, and 1358 ms overall
17-03-18 03:54:43.674 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 03:54:43.674 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 7 at Y-position 64.05615234375, Z-Position -0.1309939683786. ------
17-03-18 03:54:43.684 -07 000000591 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 03:54:43.684 -07 000000608 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.8926 mm, moving Z to -0.13760 mm
17-03-18 03:54:43.684 -07 000000608 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 03:54:43.684 -07 000000462 INF: FPGA: Recv FOCMRRCUR 
17-03-18 03:54:43.684 -07 000000590 INF: Z Motor: Entering MoveAbsStepped (DAC = 30058, sync = True, waitForSettling = False)
17-03-18 03:54:43.684 -07 000000590 INF: Z Motor: Moving to -0.137597 mm, started at -0.130994 mm, distance = -6.60 um
17-03-18 03:54:43.684 -07 000000447 INF: Y Motor: Entering MoveAbsStepped (target = 103828 steps, sync = True, waitForSettling = True)
17-03-18 03:54:43.684 -07 000000447 INF: Y Motor: Moving to 64.8926 mm, started at 64.0562 mm, delta = 0.8365 mm
17-03-18 03:54:43.694 -07 000000591 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 03:54:43.694 -07 000000590 INF: FPGA: Xmit ZDACW 30058\n [Z Motor]
17-03-18 03:54:43.694 -07 000000462 INF: FPGA: Recv ZDACW
17-03-18 03:54:43.704 -07 000000447 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:54:43.704 -07 000000590 INF: FPGA: 'ZDACW 30058' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-18 03:54:43.704 -07 000000462 INF: FPGA: Recv YRDPOS 131188
17-03-18 03:54:43.714 -07 000000591 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 03:54:43.714 -07 000000447 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-18 03:54:43.714 -07 000000447 INF: Y Motor: Encoder = 131188 = motor step 102490.6 = 64.0566 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:54:43.714 -07 000000447 INF: Y Motor: Last commanded position = 64.0626 mm (102500.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 03:54:43.714 -07 000000447 INF: Y Motor: Moving 1338 steps-13
17-03-18 03:54:43.724 -07 000000590 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:54:43.724 -07 000000462 INF: FPGA: Recv ZDACR 30058
17-03-18 03:54:43.734 -07 000000590 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 03:54:43.734 -07 000000590 INF: Z Motor: MoveAbsStepped took 43 ms (did NOT wait for settling yet))
17-03-18 03:54:43.734 -07 000000447 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 03:54:43.884 -07 000000611 INF: Camera: sBCa_ReadImage(785074704, 2334002848, 0x0, 418435064) end. Duration was 391 ms.
17-03-18 03:54:43.884 -07 000000611 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-18 03:54:43.884 -07 000000611 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:54:43.884 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 392 ms.
17-03-18 03:54:43.884 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-18 03:54:43.884 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:54:43.884 -07 000000611 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 03:54:43.884 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 03:54:43.884 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-18 03:54:43.894 -07 000000611 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 408 ms.
17-03-18 03:54:43.914 -07 000000462 INF: FPGA: Recv FOCMRRFOC
17-03-18 03:54:43.914 -07 000000591 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 03:54:44.104 -07 000000590 INF: FPGA: Recv YMVTILE
17-03-18 03:54:44.104 -07 000000447 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 391 ms overall
17-03-18 03:54:44.154 -07 000000447 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:54:44.154 -07 000000611 INF: FPGA: Recv YRDPOS 132870
17-03-18 03:54:44.164 -07 000000447 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 03:54:44.164 -07 000000447 INF: Y Motor: Encoder = 132870 = motor step 103804.7 = 64.8779 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:54:44.164 -07 000000447 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-18 03:54:44.164 -07 000000447 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 391 ms, distance = 0.836 mm, average velocity = 2.139 mm/sec
17-03-18 03:54:45.114 -07 000000447 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:54:45.114 -07 000000462 INF: FPGA: Recv YRDPOS 132871
17-03-18 03:54:45.124 -07 000000447 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:54:45.124 -07 000000447 INF: Y Motor: Encoder = 132871 = motor step 103805.5 = 64.8784 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:54:45.144 -07 000000447 INF: Y Motor: After move to 64.892609, error = -0.014191, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 03:54:45.144 -07 000000447 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 03:54:45.154 -07 000000447 INF: Y Motor: Moved to 64.8784 after 1462 ms (table move)
17-03-18 03:54:45.154 -07 000000608 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137597 mm (DAC = 30058)
17-03-18 03:54:45.154 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:45.154 -07 000000590 INF: FPGA: Recv ZSGSRD 30713
17-03-18 03:54:45.164 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 03:54:45.164 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:45.164 -07 000000611 INF: FPGA: Recv ZSGSRD 30712
17-03-18 03:54:45.174 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:45.174 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:45.174 -07 000000590 INF: FPGA: Recv ZSGSRD 30716
17-03-18 03:54:45.184 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:45.184 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:45.184 -07 000000611 INF: FPGA: Recv ZSGSRD 30714
17-03-18 03:54:45.194 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:45.194 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:45.194 -07 000000462 INF: FPGA: Recv ZSGSRD 30711
17-03-18 03:54:45.204 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:45.204 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:45.204 -07 000000611 INF: FPGA: Recv ZSGSRD 30704
17-03-18 03:54:45.214 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:45.214 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:45.214 -07 000000462 INF: FPGA: Recv ZSGSRD 30709
17-03-18 03:54:45.224 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:45.224 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:45.224 -07 000000611 INF: FPGA: Recv ZSGSRD 30705
17-03-18 03:54:45.234 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:45.234 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:45.234 -07 000000590 INF: FPGA: Recv ZSGSRD 30702
17-03-18 03:54:45.244 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:45.244 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:45.244 -07 000000447 INF: FPGA: Recv ZSGSRD 30715
17-03-18 03:54:45.254 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:45.254 -07 000000608 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:54:45.254 -07 000000611 INF: FPGA: Recv ZPIEZORD 26492
17-03-18 03:54:45.264 -07 000000608 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:45.264 -07 000000608 INF: Z Motor: Piezo is near 36.6 V (nominally 0 to 100 V), expect near 45.9 V, since DAC is at 4.587 V. Piezo Error = -9.3 V.
17-03-18 03:54:45.264 -07 000000608 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.6 um, Read 10 ADC samples: Avg = 30710 (-136.8 uncal um), Error = 0.8 uncal um, Median = 30712 (-136.8 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 30702 (-136.8 uncal um), Max = 30716 (-136.9 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 03:54:45.264 -07 000000608 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30710, posNoise = 6, negNoise = 8
17-03-18 03:54:45.264 -07 000000608 INF: Z Motor: After move to -0.137597, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:54:45.264 -07 000000608 INF: Z Motor: Settle wait time = 1468 ms, measure time = 105 ms (allowed 150 ms), total time = 1573 ms
17-03-18 03:54:45.264 -07 000000608 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 03:54:45.314 -07 000000608 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1627 ms
17-03-18 03:54:45.314 -07 000000608 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 03:54:45.314 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:54:45.314 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:54:45.314 -07 000000591 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:54:45.314 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:54:45.314 -07 000000590 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 03:54:45.314 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:54:45.314 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 03:54:45.314 -07 000000590 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 03:54:45.324 -07 000000590 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 03:54:45.324 -07 000000590 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 03:54:45.324 -07 000000590 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 03:54:45.324 -07 000000590 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 03:54:45.334 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 03:54:45.374 -07 000000591 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 03:54:45.674 -07 000000512 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 03:54:45.674 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 03:54:45.674 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 03:54:45.674 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 03:54:45.714 -07 000000618 INF: FPGA: Recv @CAMSNAP 383
17-03-18 03:54:45.714 -07 000000512 INF: FPGA: Recv CAMSNAP
17-03-18 03:54:45.714 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 379 ms to get response, and 388 ms overall
17-03-18 03:54:45.794 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 03:54:45.794 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:54:45.794 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 03:54:45.794 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 03:54:45.814 -07 000000447 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 03:54:45.814 -07 000000462 INF: Autofocus start
17-03-18 03:54:45.814 -07 000000462 INF: MeasureProfile start
17-03-18 03:54:45.814 -07 000000611 INF: FPGA: Recv FOCMRRCUR 
17-03-18 03:54:45.824 -07 000000447 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 03:54:45.824 -07 000000447 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 03:54:45.824 -07 000000462 INF: MeasureProfile done
17-03-18 03:54:45.824 -07 000000462 INF: X=-32  Z correction [um]=-0.1591732
17-03-18 03:54:45.824 -07 000000462 INF: Autofocus finished
17-03-18 03:54:46.024 -07 000000591 INF: FPGA: Recv FOCMRRIMG
17-03-18 03:54:46.024 -07 000000447 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 03:54:46.024 -07 000000610 INF: ------------ Scan Snapping tile 7 at Y-position 64.87841796875, Z-position -0.137610906884614. ----------
17-03-18 03:54:46.024 -07 000000610 INF: Cycle	118	Tile	7	Exposure Settings		A	412	G	198	T	198	C	412
17-03-18 03:54:46.034 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28536, sync = True, waitForSettling = True)
17-03-18 03:54:46.034 -07 000000610 INF: Z Motor: Moving to -0.130629 mm, started at -0.137611 mm, distance = 6.98 um
17-03-18 03:54:46.034 -07 000000610 INF: FPGA: Xmit ZDACW 28536\n [Z Motor]
17-03-18 03:54:46.034 -07 000000618 INF: FPGA: Recv ZDACW
17-03-18 03:54:46.044 -07 000000610 INF: FPGA: 'ZDACW 28536' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 03:54:46.044 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:54:46.044 -07 000000590 INF: FPGA: Recv ZDACR 28536
17-03-18 03:54:46.054 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:46.054 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 03:54:46.204 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:46.204 -07 000000618 INF: FPGA: Recv ZSGSRD 29632
17-03-18 03:54:46.214 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:54:46.214 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:46.214 -07 000000590 INF: FPGA: Recv ZSGSRD 29624
17-03-18 03:54:46.224 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:46.224 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:46.224 -07 000000447 INF: FPGA: Recv ZSGSRD 29626
17-03-18 03:54:46.234 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:46.234 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:46.234 -07 000000591 INF: FPGA: Recv ZSGSRD 29624
17-03-18 03:54:46.244 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:46.244 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:46.244 -07 000000618 INF: FPGA: Recv ZSGSRD 29628
17-03-18 03:54:46.254 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:46.254 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:46.254 -07 000000608 INF: FPGA: Recv ZSGSRD 29622
17-03-18 03:54:46.264 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:46.264 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:46.264 -07 000000625 INF: FPGA: Recv ZSGSRD 29623
17-03-18 03:54:46.274 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:46.274 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:46.274 -07 000000618 INF: FPGA: Recv ZSGSRD 29623
17-03-18 03:54:46.284 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:46.284 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:46.284 -07 000000625 INF: FPGA: Recv ZSGSRD 29626
17-03-18 03:54:46.294 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:46.294 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:46.294 -07 000000591 INF: FPGA: Recv ZSGSRD 29627
17-03-18 03:54:46.304 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:46.304 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:54:46.304 -07 000000447 INF: FPGA: Recv ZPIEZORD 25064
17-03-18 03:54:46.314 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:46.314 -07 000000610 INF: Z Motor: Piezo is near 33.5 V (nominally 0 to 100 V), expect near 43.5 V, since DAC is at 4.354 V. Piezo Error = -10.0 V.
17-03-18 03:54:46.314 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.6 um, Read 10 ADC samples: Avg = 29626 (-129.9 uncal um), Error = 0.8 uncal um, Median = 29625 (-129.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29622 (-129.8 uncal um), Max = 29632 (-129.9 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 03:54:46.314 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29626, posNoise = 6, negNoise = 4
17-03-18 03:54:46.314 -07 000000610 INF: Z Motor: After move to -0.130629, error = -0.000018, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:54:46.314 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 03:54:46.314 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:54:46.314 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:54:46.314 -07 000000591 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:54:46.314 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 03:54:46.314 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:54:46.314 -07 000000625 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 03:54:46.314 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 03:54:46.314 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:54:46.314 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 03:54:46.314 -07 000000625 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 03:54:46.314 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 03:54:46.314 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 03:54:46.324 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 03:54:46.324 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 03:54:46.324 -07 000000625 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 03:54:46.324 -07 000000625 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 03:54:46.344 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 17 ms.
17-03-18 03:54:46.344 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 28 ms.
17-03-18 03:54:46.344 -07 000000625 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 17 ms.
17-03-18 03:54:46.344 -07 000000625 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 28 ms.
17-03-18 03:54:46.344 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 412 412 198 198 28713 150\n [Camera]
17-03-18 03:54:46.544 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 03:54:46.624 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 03:54:46.624 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 117. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1690, R2=1759, Total=3449. Warn if over 250 bubbles per interval.
17-03-18 03:54:46.954 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 604
17-03-18 03:54:46.954 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 604
17-03-18 03:54:46.954 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:54:46.964 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 604
17-03-18 03:54:46.964 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 604
17-03-18 03:54:46.964 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:54:46.964 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:54:46.964 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 03:54:46.964 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:54:46.964 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 2620985504, 0x0, 391868352) start.
17-03-18 03:54:47.154 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28713 797
17-03-18 03:54:47.304 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning grn on 947
17-03-18 03:54:47.334 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 373 ms.
17-03-18 03:54:47.334 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 373 ms.
17-03-18 03:54:47.334 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:54:47.344 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:54:47.344 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 2620985504, 0x0, 391868352) end. Duration was 376 ms.
17-03-18 03:54:47.344 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-18 03:54:47.344 -07 000000625 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:54:47.344 -07 000000625 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 03:54:47.344 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-18 03:54:47.344 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-18 03:54:47.494 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1145
17-03-18 03:54:47.494 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1145
17-03-18 03:54:47.504 -07 000000611 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:54:47.504 -07 000000611 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:54:47.504 -07 000000611 INF: Camera: sBCa_ReadImage(785074288, 2162365984, 0x0, 391868352) start.
17-03-18 03:54:47.504 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1145
17-03-18 03:54:47.504 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1145
17-03-18 03:54:47.504 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:54:47.504 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:54:47.504 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 2197788248, 0x0, 418435064) start.
17-03-18 03:54:47.694 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP 1338
17-03-18 03:54:47.694 -07 000000608 INF: FPGA: Recv CAMDBLSNAP
17-03-18 03:54:47.694 -07 000000610 INF: FPGA: 'CAMDBLSNAP 412 412 198 198 28713 150' command took 2 ms to send, 1341 ms to get response, and 1344 ms overall
17-03-18 03:54:47.694 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 03:54:47.694 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 8 at Y-position 64.87841796875, Z-Position -0.130647060922945. ------
17-03-18 03:54:47.694 -07 000000512 INF: Y Motor: MoveYZ optimized starting. Moving Y to 65.7226 mm, moving Z to -0.13732 mm
17-03-18 03:54:47.694 -07 000000512 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 03:54:47.704 -07 000000462 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 03:54:47.704 -07 000000447 INF: Z Motor: Entering MoveAbsStepped (DAC = 29997, sync = True, waitForSettling = False)
17-03-18 03:54:47.704 -07 000000447 INF: Z Motor: Moving to -0.137317 mm, started at -0.130647 mm, distance = -6.67 um
17-03-18 03:54:47.704 -07 000000625 INF: Y Motor: Entering MoveAbsStepped (target = 105156 steps, sync = True, waitForSettling = True)
17-03-18 03:54:47.704 -07 000000625 INF: Y Motor: Moving to 65.7226 mm, started at 64.8784 mm, delta = 0.8442 mm
17-03-18 03:54:47.704 -07 000000474 INF: FPGA: Recv FOCMRRCUR 
17-03-18 03:54:47.714 -07 000000625 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:54:47.714 -07 000000462 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-18 03:54:47.714 -07 000000608 INF: FPGA: Recv YRDPOS 132871
17-03-18 03:54:47.724 -07 000000625 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-18 03:54:47.724 -07 000000625 INF: Y Motor: Encoder = 132871 = motor step 103805.5 = 64.8784 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:54:47.724 -07 000000625 INF: Y Motor: Last commanded position = 64.8926 mm (103828.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 03:54:47.724 -07 000000625 INF: Y Motor: Moving 1351 steps-30
17-03-18 03:54:47.734 -07 000000447 INF: FPGA: Xmit ZDACW 29997\n [Z Motor]
17-03-18 03:54:47.734 -07 000000501 INF: FPGA: Recv ZDACW
17-03-18 03:54:47.744 -07 000000462 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 03:54:47.744 -07 000000447 INF: FPGA: 'ZDACW 29997' command took 0 ms to send, 0 ms to get response, and 37 ms overall
17-03-18 03:54:47.754 -07 000000625 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 03:54:47.774 -07 000000447 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:54:47.774 -07 000000474 INF: FPGA: Recv ZDACR 29997
17-03-18 03:54:47.784 -07 000000447 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 39 ms overall
17-03-18 03:54:47.784 -07 000000447 INF: Z Motor: MoveAbsStepped took 77 ms (did NOT wait for settling yet))
17-03-18 03:54:47.904 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 2197788248, 0x0, 418435064) end. Duration was 399 ms.
17-03-18 03:54:47.904 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 03:54:47.904 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:54:47.904 -07 000000611 INF: Camera: sBCa_ReadImage(785074288, 2162365984, 0x0, 391868352) end. Duration was 401 ms.
17-03-18 03:54:47.904 -07 000000611 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 03:54:47.904 -07 000000611 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:54:47.904 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 03:54:47.904 -07 000000611 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 03:54:47.904 -07 000000611 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 408 ms.
17-03-18 03:54:47.914 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-18 03:54:47.944 -07 000000618 INF: FPGA: Recv FOCMRRFOC
17-03-18 03:54:47.944 -07 000000462 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 232 ms overall
17-03-18 03:54:48.014 -07 000000611 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 118, FrontChillerTemperature: 3.999021,
17-03-18 03:54:48.134 -07 000000462 INF: FPGA: Recv YMVTILE
17-03-18 03:54:48.134 -07 000000625 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 371 ms to get response, and 411 ms overall
17-03-18 03:54:48.174 -07 000000625 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:54:48.184 -07 000000474 INF: FPGA: Recv YRDPOS 134581
17-03-18 03:54:48.184 -07 000000625 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 03:54:48.184 -07 000000625 INF: Y Motor: Encoder = 134581 = motor step 105141.4 = 65.7134 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:54:48.184 -07 000000625 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm)
17-03-18 03:54:48.184 -07 000000625 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 411 ms, distance = 0.844 mm, average velocity = 2.054 mm/sec
17-03-18 03:54:49.134 -07 000000625 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:54:49.134 -07 000000474 INF: FPGA: Recv YRDPOS 134581
17-03-18 03:54:49.144 -07 000000625 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:54:49.144 -07 000000625 INF: Y Motor: Encoder = 134581 = motor step 105141.4 = 65.7134 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:54:49.174 -07 000000625 INF: Y Motor: After move to 65.722610, error = -0.009232, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 03:54:49.174 -07 000000625 INF: Y Motor: Position error after settling (table move) = -19 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 03:54:49.174 -07 000000625 INF: Y Motor: Moved to 65.7134 after 1474 ms (table move)
17-03-18 03:54:49.184 -07 000000512 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137317 mm (DAC = 29997)
17-03-18 03:54:49.184 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:49.184 -07 000000474 INF: FPGA: Recv ZSGSRD 30671
17-03-18 03:54:49.194 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:49.194 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:49.194 -07 000000447 INF: FPGA: Recv ZSGSRD 30668
17-03-18 03:54:49.204 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:49.204 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:49.204 -07 000000618 INF: FPGA: Recv ZSGSRD 30667
17-03-18 03:54:49.214 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:49.214 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:49.214 -07 000000618 INF: FPGA: Recv ZSGSRD 30667
17-03-18 03:54:49.224 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:49.224 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:49.224 -07 000000447 INF: FPGA: Recv ZSGSRD 30662
17-03-18 03:54:49.234 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:49.234 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:49.234 -07 000000625 INF: FPGA: Recv ZSGSRD 30660
17-03-18 03:54:49.244 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:49.244 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:49.244 -07 000000447 INF: FPGA: Recv ZSGSRD 30665
17-03-18 03:54:49.254 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:49.254 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:49.254 -07 000000618 INF: FPGA: Recv ZSGSRD 30666
17-03-18 03:54:49.264 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:49.264 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:49.264 -07 000000462 INF: FPGA: Recv ZSGSRD 30670
17-03-18 03:54:49.274 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:49.274 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:49.274 -07 000000447 INF: FPGA: Recv ZSGSRD 30665
17-03-18 03:54:49.284 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:49.284 -07 000000512 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:54:49.284 -07 000000618 INF: FPGA: Recv ZPIEZORD 26431
17-03-18 03:54:49.294 -07 000000512 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:49.294 -07 000000512 INF: Z Motor: Piezo is near 36.5 V (nominally 0 to 100 V), expect near 45.8 V, since DAC is at 4.577 V. Piezo Error = -9.3 V.
17-03-18 03:54:49.294 -07 000000512 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.3 um, Read 10 ADC samples: Avg = 30666 (-136.5 uncal um), Error = 0.8 uncal um, Median = 30666 (-136.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 30660 (-136.5 uncal um), Max = 30671 (-136.6 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 03:54:49.294 -07 000000512 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30666, posNoise = 5, negNoise = 6
17-03-18 03:54:49.294 -07 000000512 INF: Z Motor: After move to -0.137317, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:54:49.294 -07 000000512 INF: Z Motor: Settle wait time = 1477 ms, measure time = 111 ms (allowed 150 ms), total time = 1588 ms
17-03-18 03:54:49.294 -07 000000512 INF: Z Motor: Waiting extra 39 ms after reading position to reach expected total of 150 ms
17-03-18 03:54:49.334 -07 000000512 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1633 ms
17-03-18 03:54:49.334 -07 000000512 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 03:54:49.334 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:54:49.334 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:54:49.334 -07 000000447 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:54:49.334 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:54:49.334 -07 000000625 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 03:54:49.334 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:54:49.344 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 03:54:49.344 -07 000000625 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 03:54:49.344 -07 000000625 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 03:54:49.344 -07 000000625 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 03:54:49.354 -07 000000625 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-18 03:54:49.354 -07 000000625 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-18 03:54:49.364 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 03:54:49.404 -07 000000512 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 03:54:49.704 -07 000000618 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 03:54:49.704 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 03:54:49.704 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 03:54:49.704 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 598405504, 0x0, 559484976) start.
17-03-18 03:54:49.744 -07 000000462 INF: FPGA: Recv @CAMSNAP 380
17-03-18 03:54:49.744 -07 000000447 INF: FPGA: Recv CAMSNAP
17-03-18 03:54:49.744 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 03:54:49.824 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 598405504, 0x0, 559484976) end. Duration was 119 ms.
17-03-18 03:54:49.824 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:54:49.824 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 03:54:49.824 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 122 ms.
17-03-18 03:54:49.844 -07 000000462 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 03:54:49.844 -07 000000512 INF: Autofocus start
17-03-18 03:54:49.844 -07 000000512 INF: MeasureProfile start
17-03-18 03:54:49.844 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-18 03:54:49.854 -07 000000462 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 03:54:49.854 -07 000000462 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 03:54:49.854 -07 000000512 INF: MeasureProfile done
17-03-18 03:54:49.854 -07 000000512 INF: X=0  Z correction [um]=-0.02394831
17-03-18 03:54:49.854 -07 000000512 INF: Autofocus finished
17-03-18 03:54:50.054 -07 000000512 INF: FPGA: Recv FOCMRRIMG
17-03-18 03:54:50.054 -07 000000462 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 03:54:50.054 -07 000000610 INF: ------------ Scan Snapping tile 8 at Y-position 65.71337890625, Z-position -0.137328241550377. ----------
17-03-18 03:54:50.054 -07 000000610 INF: Cycle	118	Tile	8	Exposure Settings		A	412	G	198	T	198	C	412
17-03-18 03:54:50.064 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28505, sync = True, waitForSettling = True)
17-03-18 03:54:50.064 -07 000000610 INF: Z Motor: Moving to -0.130488 mm, started at -0.137328 mm, distance = 6.84 um
17-03-18 03:54:50.064 -07 000000610 INF: FPGA: Xmit ZDACW 28505\n [Z Motor]
17-03-18 03:54:50.064 -07 000000462 INF: FPGA: Recv ZDACW
17-03-18 03:54:50.074 -07 000000610 INF: FPGA: 'ZDACW 28505' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 03:54:50.074 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:54:50.074 -07 000000512 INF: FPGA: Recv ZDACR 28505
17-03-18 03:54:50.084 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:50.084 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 03:54:50.234 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:50.234 -07 000000625 INF: FPGA: Recv ZSGSRD 29604
17-03-18 03:54:50.244 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:54:50.244 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:50.244 -07 000000462 INF: FPGA: Recv ZSGSRD 29600
17-03-18 03:54:50.254 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:50.254 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:50.254 -07 000000447 INF: FPGA: Recv ZSGSRD 29602
17-03-18 03:54:50.264 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:50.264 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:50.264 -07 000000462 INF: FPGA: Recv ZSGSRD 29599
17-03-18 03:54:50.274 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:50.274 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:50.274 -07 000000625 INF: FPGA: Recv ZSGSRD 29603
17-03-18 03:54:50.284 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:50.284 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:50.284 -07 000000512 INF: FPGA: Recv ZSGSRD 29605
17-03-18 03:54:50.294 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:50.294 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:50.294 -07 000000474 INF: FPGA: Recv ZSGSRD 29599
17-03-18 03:54:50.304 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:50.304 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:50.304 -07 000000618 INF: FPGA: Recv ZSGSRD 29607
17-03-18 03:54:50.314 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:50.314 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:50.314 -07 000000474 INF: FPGA: Recv ZSGSRD 29603
17-03-18 03:54:50.324 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:50.324 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:50.324 -07 000000625 INF: FPGA: Recv ZSGSRD 29604
17-03-18 03:54:50.334 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 03:54:50.334 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:54:50.334 -07 000000437 INF: FPGA: Recv ZPIEZORD 25057
17-03-18 03:54:50.344 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:50.344 -07 000000610 INF: Z Motor: Piezo is near 33.5 V (nominally 0 to 100 V), expect near 43.5 V, since DAC is at 4.350 V. Piezo Error = -10.0 V.
17-03-18 03:54:50.344 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.5 um, Read 10 ADC samples: Avg = 29603 (-129.7 uncal um), Error = 0.8 uncal um, Median = 29603 (-129.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 29599 (-129.7 uncal um), Max = 29607 (-129.7 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 03:54:50.344 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29603, posNoise = 4, negNoise = 4
17-03-18 03:54:50.344 -07 000000610 INF: Z Motor: After move to -0.130488, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:54:50.344 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 03:54:50.344 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:54:50.344 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:54:50.344 -07 000000625 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:54:50.344 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:54:50.344 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 03:54:50.344 -07 000000447 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 03:54:50.344 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 03:54:50.344 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:54:50.344 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 03:54:50.344 -07 000000447 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 03:54:50.344 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 03:54:50.344 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 03:54:50.354 -07 000000447 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 03:54:50.354 -07 000000447 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 03:54:50.354 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 03:54:50.354 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 03:54:50.354 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 03:54:50.354 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 03:54:50.364 -07 000000447 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 03:54:50.364 -07 000000447 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 03:54:50.364 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 412 412 198 198 28681 150\n [Camera]
17-03-18 03:54:50.564 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 03:54:50.974 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 604
17-03-18 03:54:50.974 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 604
17-03-18 03:54:50.974 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:54:50.974 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:54:50.974 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 2233210512, 0x0, 391868352) start.
17-03-18 03:54:50.974 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 604
17-03-18 03:54:50.974 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 604
17-03-18 03:54:50.984 -07 000000437 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:54:50.984 -07 000000437 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:54:50.984 -07 000000437 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 03:54:51.164 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28681 797
17-03-18 03:54:51.324 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning grn on 947
17-03-18 03:54:51.354 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 2233210512, 0x0, 391868352) end. Duration was 378 ms.
17-03-18 03:54:51.354 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-18 03:54:51.354 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:54:51.354 -07 000000437 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 376 ms.
17-03-18 03:54:51.354 -07 000000437 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-18 03:54:51.354 -07 000000437 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:54:51.364 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 03:54:51.364 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-18 03:54:51.364 -07 000000437 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 03:54:51.374 -07 000000437 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-18 03:54:51.514 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1145
17-03-18 03:54:51.514 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1145
17-03-18 03:54:51.514 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:54:51.514 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:54:51.514 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) start.
17-03-18 03:54:51.524 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1145
17-03-18 03:54:51.524 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1145
17-03-18 03:54:51.524 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:54:51.524 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:54:51.524 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) start.
17-03-18 03:54:51.624 -07 000000447 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 03:54:51.624 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 117. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1690, R2=1759, Total=3449. Warn if over 250 bubbles per interval.
17-03-18 03:54:51.704 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP 1338
17-03-18 03:54:51.704 -07 000000447 INF: FPGA: Recv CAMDBLSNAP
17-03-18 03:54:51.704 -07 000000610 INF: FPGA: 'CAMDBLSNAP 412 412 198 198 28681 150' command took 2 ms to send, 1338 ms to get response, and 1345 ms overall
17-03-18 03:54:51.714 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 03:54:51.714 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 9 at Y-position 65.71337890625, Z-Position -0.130499304043685. ------
17-03-18 03:54:51.714 -07 000000437 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 03:54:51.714 -07 000000512 INF: Y Motor: MoveYZ optimized starting. Moving Y to 66.5526 mm, moving Z to -0.13680 mm
17-03-18 03:54:51.714 -07 000000512 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 03:54:51.714 -07 000000618 INF: Y Motor: Entering MoveAbsStepped (target = 106484 steps, sync = True, waitForSettling = True)
17-03-18 03:54:51.714 -07 000000618 INF: Y Motor: Moving to 66.5526 mm, started at 65.7134 mm, delta = 0.8392 mm
17-03-18 03:54:51.714 -07 000000474 INF: Z Motor: Entering MoveAbsStepped (DAC = 29883, sync = True, waitForSettling = False)
17-03-18 03:54:51.714 -07 000000474 INF: Z Motor: Moving to -0.136796 mm, started at -0.130499 mm, distance = -6.30 um
17-03-18 03:54:51.724 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:54:51.724 -07 000000447 INF: FPGA: Recv FOCMRRCUR 
17-03-18 03:54:51.724 -07 000000437 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 03:54:51.724 -07 000000608 INF: FPGA: Recv YRDPOS 134582
17-03-18 03:54:51.734 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:54:51.734 -07 000000618 INF: Y Motor: Encoder = 134582 = motor step 105142.2 = 65.7139 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:54:51.734 -07 000000474 INF: FPGA: Xmit ZDACW 29883\n [Z Motor]
17-03-18 03:54:51.734 -07 000000608 INF: FPGA: Recv ZDACW
17-03-18 03:54:51.734 -07 000000618 INF: Y Motor: Last commanded position = 65.7226 mm (105156.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 03:54:51.734 -07 000000618 INF: Y Motor: Moving 1342 steps-19
17-03-18 03:54:51.744 -07 000000474 INF: FPGA: 'ZDACW 29883' command took 0 ms to send, 0 ms to get response, and 20 ms overall
17-03-18 03:54:51.744 -07 000000437 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 03:54:51.754 -07 000000618 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 03:54:51.764 -07 000000474 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:54:51.764 -07 000000447 INF: FPGA: Recv ZDACR 29883
17-03-18 03:54:51.774 -07 000000474 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-18 03:54:51.774 -07 000000474 INF: Z Motor: MoveAbsStepped took 50 ms (did NOT wait for settling yet))
17-03-18 03:54:51.904 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) end. Duration was 385 ms.
17-03-18 03:54:51.904 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-18 03:54:51.904 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:54:51.904 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) end. Duration was 391 ms.
17-03-18 03:54:51.904 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-18 03:54:51.904 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:54:51.914 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:54:51.914 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 03:54:51.914 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 03:54:51.914 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 03:54:51.944 -07 000000012 INF: FPGA: Recv FOCMRRFOC
17-03-18 03:54:51.944 -07 000000437 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 222 ms overall
17-03-18 03:54:52.134 -07 000000447 INF: FPGA: Recv YMVTILE
17-03-18 03:54:52.134 -07 000000618 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 372 ms to get response, and 394 ms overall
17-03-18 03:54:52.184 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:54:52.184 -07 000000625 INF: FPGA: Recv YRDPOS 136271
17-03-18 03:54:52.194 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 03:54:52.194 -07 000000618 INF: Y Motor: Encoder = 136271 = motor step 106461.7 = 66.5386 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:54:52.194 -07 000000618 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-18 03:54:52.194 -07 000000618 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.839 mm, average velocity = 2.130 mm/sec
17-03-18 03:54:53.144 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:54:53.144 -07 000000447 INF: FPGA: Recv YRDPOS 136271
17-03-18 03:54:53.154 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:53.154 -07 000000618 INF: Y Motor: Encoder = 136271 = motor step 106461.7 = 66.5386 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:54:53.184 -07 000000618 INF: Y Motor: After move to 66.552605, error = -0.014030, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 03:54:53.184 -07 000000618 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 03:54:53.184 -07 000000618 INF: Y Motor: Moved to 66.5386 after 1464 ms (table move)
17-03-18 03:54:53.184 -07 000000512 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136796 mm (DAC = 29883)
17-03-18 03:54:53.184 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:53.184 -07 000000618 INF: FPGA: Recv ZSGSRD 30584
17-03-18 03:54:53.194 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 03:54:53.194 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:53.194 -07 000000501 INF: FPGA: Recv ZSGSRD 30580
17-03-18 03:54:53.204 -07 000000512 INF: FPGA: 'ZSGSRD' command took 2 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:53.204 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:53.204 -07 000000501 INF: FPGA: Recv ZSGSRD 30587
17-03-18 03:54:53.214 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:53.214 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:53.214 -07 000000012 INF: FPGA: Recv ZSGSRD 30581
17-03-18 03:54:53.224 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:53.224 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:53.224 -07 000000012 INF: FPGA: Recv ZSGSRD 30585
17-03-18 03:54:53.234 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:53.234 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:53.234 -07 000000447 INF: FPGA: Recv ZSGSRD 30578
17-03-18 03:54:53.244 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:53.244 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:53.244 -07 000000608 INF: FPGA: Recv ZSGSRD 30576
17-03-18 03:54:53.254 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:53.254 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:53.254 -07 000000608 INF: FPGA: Recv ZSGSRD 30586
17-03-18 03:54:53.264 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:53.264 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:53.264 -07 000000608 INF: FPGA: Recv ZSGSRD 30584
17-03-18 03:54:53.274 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:53.274 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:53.274 -07 000000608 INF: FPGA: Recv ZSGSRD 30591
17-03-18 03:54:53.284 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:53.284 -07 000000512 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:54:53.284 -07 000000502 INF: FPGA: Recv ZPIEZORD 26343
17-03-18 03:54:53.294 -07 000000512 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:53.294 -07 000000512 INF: Z Motor: Piezo is near 36.3 V (nominally 0 to 100 V), expect near 45.6 V, since DAC is at 4.560 V. Piezo Error = -9.3 V.
17-03-18 03:54:53.294 -07 000000512 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.8 um, Read 10 ADC samples: Avg = 30583 (-136.0 uncal um), Error = 0.8 uncal um, Median = 30584 (-136.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 30576 (-136.0 uncal um), Max = 30591 (-136.1 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 03:54:53.294 -07 000000512 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30583, posNoise = 8, negNoise = 7
17-03-18 03:54:53.294 -07 000000512 INF: Z Motor: After move to -0.136796, error = 0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:54:53.294 -07 000000512 INF: Z Motor: Settle wait time = 1467 ms, measure time = 104 ms (allowed 150 ms), total time = 1571 ms
17-03-18 03:54:53.294 -07 000000512 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-18 03:54:53.344 -07 000000512 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1623 ms
17-03-18 03:54:53.344 -07 000000512 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 03:54:53.344 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:54:53.344 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:54:53.344 -07 000000590 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:54:53.344 -07 000000625 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:54:53.344 -07 000000474 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 03:54:53.344 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:54:53.344 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 03:54:53.344 -07 000000474 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 03:54:53.354 -07 000000474 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 03:54:53.354 -07 000000474 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 03:54:53.364 -07 000000474 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 03:54:53.364 -07 000000474 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms.
17-03-18 03:54:53.364 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 03:54:53.414 -07 000000502 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 03:54:53.434 -07 000000502 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 118, FrontChillerTemperature: 4.019446,
17-03-18 03:54:53.714 -07 000000501 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 03:54:53.714 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 03:54:53.714 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 03:54:53.714 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2151893096, 0x0, 559484976) start.
17-03-18 03:54:53.754 -07 000000501 INF: FPGA: Recv @CAMSNAP 380
17-03-18 03:54:53.754 -07 000000502 INF: FPGA: Recv CAMSNAP
17-03-18 03:54:53.754 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 381 ms to get response, and 384 ms overall
17-03-18 03:54:53.824 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2151893096, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 03:54:53.834 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:54:53.834 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 03:54:53.834 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-18 03:54:53.854 -07 000000501 INF: Autofocus start
17-03-18 03:54:53.854 -07 000000501 INF: MeasureProfile start
17-03-18 03:54:53.854 -07 000000625 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 03:54:53.854 -07 000000012 INF: FPGA: Recv FOCMRRCUR 
17-03-18 03:54:53.864 -07 000000625 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 03:54:53.864 -07 000000625 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 03:54:53.864 -07 000000501 INF: MeasureProfile done
17-03-18 03:54:53.864 -07 000000501 INF: X=43  Z correction [um]=0.1828984
17-03-18 03:54:53.864 -07 000000501 INF: Autofocus finished
17-03-18 03:54:54.064 -07 000000502 INF: FPGA: Recv FOCMRRIMG
17-03-18 03:54:54.064 -07 000000625 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 03:54:54.064 -07 000000610 INF: ------------ Scan Snapping tile 9 at Y-position 66.53857421875, Z-position -0.13679503194261. ----------
17-03-18 03:54:54.064 -07 000000610 INF: Cycle	118	Tile	9	Exposure Settings		A	412	G	198	T	198	C	412
17-03-18 03:54:54.074 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28436, sync = True, waitForSettling = True)
17-03-18 03:54:54.074 -07 000000610 INF: Z Motor: Moving to -0.130172 mm, started at -0.136795 mm, distance = 6.62 um
17-03-18 03:54:54.074 -07 000000610 INF: FPGA: Xmit ZDACW 28436\n [Z Motor]
17-03-18 03:54:54.074 -07 000000625 INF: FPGA: Recv ZDACW
17-03-18 03:54:54.084 -07 000000610 INF: FPGA: 'ZDACW 28436' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 03:54:54.084 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:54:54.084 -07 000000502 INF: FPGA: Recv ZDACR 28436
17-03-18 03:54:54.094 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:54.094 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 03:54:54.244 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:54.244 -07 000000501 INF: FPGA: Recv ZSGSRD 29547
17-03-18 03:54:54.254 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:54:54.254 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:54.254 -07 000000625 INF: FPGA: Recv ZSGSRD 29551
17-03-18 03:54:54.264 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:54.264 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:54.264 -07 000000501 INF: FPGA: Recv ZSGSRD 29556
17-03-18 03:54:54.274 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:54.274 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:54.274 -07 000000625 INF: FPGA: Recv ZSGSRD 29549
17-03-18 03:54:54.284 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:54.284 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:54.284 -07 000000501 INF: FPGA: Recv ZSGSRD 29549
17-03-18 03:54:54.294 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:54.294 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:54.294 -07 000000618 INF: FPGA: Recv ZSGSRD 29556
17-03-18 03:54:54.304 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:54.304 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:54.304 -07 000000012 INF: FPGA: Recv ZSGSRD 29554
17-03-18 03:54:54.314 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:54.314 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:54.314 -07 000000618 INF: FPGA: Recv ZSGSRD 29554
17-03-18 03:54:54.324 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:54.324 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:54.324 -07 000000608 INF: FPGA: Recv ZSGSRD 29552
17-03-18 03:54:54.334 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:54.334 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:54.334 -07 000000502 INF: FPGA: Recv ZSGSRD 29551
17-03-18 03:54:54.344 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:54.344 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:54:54.344 -07 000000608 INF: FPGA: Recv ZPIEZORD 24971
17-03-18 03:54:54.354 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 03:54:54.354 -07 000000610 INF: Z Motor: Piezo is near 33.3 V (nominally 0 to 100 V), expect near 43.4 V, since DAC is at 4.339 V. Piezo Error = -10.0 V.
17-03-18 03:54:54.354 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.2 um, Read 10 ADC samples: Avg = 29552 (-129.4 uncal um), Error = 0.8 uncal um, Median = 29552 (-129.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29547 (-129.4 uncal um), Max = 29556 (-129.4 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 03:54:54.354 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29552, posNoise = 4, negNoise = 5
17-03-18 03:54:54.354 -07 000000610 INF: Z Motor: After move to -0.130172, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:54:54.354 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 03:54:54.354 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:54:54.354 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:54:54.354 -07 000000625 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:54:54.354 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:54:54.354 -07 000000608 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 03:54:54.354 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 03:54:54.354 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 03:54:54.354 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:54:54.354 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 03:54:54.354 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 03:54:54.354 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 03:54:54.354 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 03:54:54.364 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 03:54:54.364 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 03:54:54.364 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 03:54:54.364 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 03:54:54.374 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 03:54:54.374 -07 000000608 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 03:54:54.374 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 03:54:54.374 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 03:54:54.374 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 412 412 198 198 28613 150\n [Camera]
17-03-18 03:54:54.574 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 03:54:54.984 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 604
17-03-18 03:54:54.984 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 604
17-03-18 03:54:54.984 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:54:54.984 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:54:54.984 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 03:54:54.984 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 604
17-03-18 03:54:54.984 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 604
17-03-18 03:54:54.984 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:54:54.984 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:54:54.984 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-18 03:54:55.174 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28613 797
17-03-18 03:54:55.324 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning grn on 947
17-03-18 03:54:55.364 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 373 ms.
17-03-18 03:54:55.364 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 373 ms.
17-03-18 03:54:55.364 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:54:55.364 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:54:55.364 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 380 ms.
17-03-18 03:54:55.364 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-18 03:54:55.364 -07 000000625 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:54:55.374 -07 000000625 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:54:55.374 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-18 03:54:55.374 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-18 03:54:55.524 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1145
17-03-18 03:54:55.524 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1145
17-03-18 03:54:55.524 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:54:55.524 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:54:55.524 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-18 03:54:55.524 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1145
17-03-18 03:54:55.524 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1145
17-03-18 03:54:55.524 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:54:55.534 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:54:55.534 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-18 03:54:55.714 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP 1337
17-03-18 03:54:55.724 -07 000000625 INF: FPGA: Recv CAMDBLSNAP
17-03-18 03:54:55.724 -07 000000610 INF: FPGA: 'CAMDBLSNAP 412 412 198 198 28613 150' command took 2 ms to send, 1340 ms to get response, and 1347 ms overall
17-03-18 03:54:55.724 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 03:54:55.724 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 10 at Y-position 66.53857421875, Z-Position -0.130171669224455. ------
17-03-18 03:54:55.724 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 03:54:55.724 -07 000000618 INF: Y Motor: MoveYZ optimized starting. Moving Y to 67.3826 mm, moving Z to -0.13707 mm
17-03-18 03:54:55.724 -07 000000618 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 03:54:55.724 -07 000000625 INF: Y Motor: Entering MoveAbsStepped (target = 107812 steps, sync = True, waitForSettling = True)
17-03-18 03:54:55.724 -07 000000625 INF: Y Motor: Moving to 67.3826 mm, started at 66.5386 mm, delta = 0.8440 mm
17-03-18 03:54:55.724 -07 000000608 INF: Z Motor: Entering MoveAbsStepped (DAC = 29943, sync = True, waitForSettling = False)
17-03-18 03:54:55.724 -07 000000608 INF: Z Motor: Moving to -0.137070 mm, started at -0.130172 mm, distance = -6.90 um
17-03-18 03:54:55.724 -07 000000462 INF: FPGA: Recv FOCMRRCUR 
17-03-18 03:54:55.734 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 03:54:55.734 -07 000000608 INF: FPGA: Xmit ZDACW 29943\n [Z Motor]
17-03-18 03:54:55.734 -07 000000590 INF: FPGA: Recv ZDACW
17-03-18 03:54:55.744 -07 000000608 INF: FPGA: 'ZDACW 29943' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-18 03:54:55.744 -07 000000625 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:54:55.744 -07 000000462 INF: FPGA: Recv YRDPOS 136271
17-03-18 03:54:55.754 -07 000000501 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 03:54:55.754 -07 000000625 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 21 ms overall
17-03-18 03:54:55.754 -07 000000625 INF: Y Motor: Encoder = 136271 = motor step 106461.7 = 66.5386 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:54:55.754 -07 000000625 INF: Y Motor: Last commanded position = 66.5526 mm (106484.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 03:54:55.754 -07 000000625 INF: Y Motor: Moving 1350 steps-29
17-03-18 03:54:55.764 -07 000000608 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:54:55.764 -07 000000474 INF: FPGA: Recv ZDACR 29943
17-03-18 03:54:55.774 -07 000000625 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 03:54:55.774 -07 000000608 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 03:54:55.774 -07 000000608 INF: Z Motor: MoveAbsStepped took 42 ms (did NOT wait for settling yet))
17-03-18 03:54:55.934 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 403 ms.
17-03-18 03:54:55.934 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 03:54:55.934 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:54:55.934 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 401 ms.
17-03-18 03:54:55.934 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-18 03:54:55.934 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:54:55.934 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:54:55.934 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 03:54:55.934 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-18 03:54:55.944 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-18 03:54:55.954 -07 000000012 INF: FPGA: Recv FOCMRRFOC
17-03-18 03:54:55.954 -07 000000501 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 220 ms overall
17-03-18 03:54:56.144 -07 000000502 INF: FPGA: Recv YMVTILE
17-03-18 03:54:56.144 -07 000000625 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 03:54:56.194 -07 000000625 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:54:56.194 -07 000000608 INF: FPGA: Recv YRDPOS 137976
17-03-18 03:54:56.204 -07 000000625 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 03:54:56.204 -07 000000625 INF: Y Motor: Encoder = 137976 = motor step 107793.8 = 67.3711 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:54:56.204 -07 000000625 INF: Y Motor: Position error before settling (table move) = -24 encoder counts (-0.012 mm)
17-03-18 03:54:56.204 -07 000000625 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.844 mm, average velocity = 2.126 mm/sec
17-03-18 03:54:56.624 -07 000000608 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 03:54:56.624 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 117. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1690, R2=1759, Total=3449. Warn if over 250 bubbles per interval.
17-03-18 03:54:57.154 -07 000000625 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:54:57.154 -07 000000474 INF: FPGA: Recv YRDPOS 137977
17-03-18 03:54:57.164 -07 000000625 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:54:57.164 -07 000000625 INF: Y Motor: Encoder = 137977 = motor step 107794.5 = 67.3716 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:54:57.184 -07 000000625 INF: Y Motor: After move to 67.382607, error = -0.011024, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 03:54:57.194 -07 000000625 INF: Y Motor: Position error after settling (table move) = -23 encoder counts (-0.011 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 03:54:57.194 -07 000000625 INF: Y Motor: Moved to 67.3716 after 1462 ms (table move)
17-03-18 03:54:57.194 -07 000000618 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137070 mm (DAC = 29943)
17-03-18 03:54:57.194 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:57.194 -07 000000608 INF: FPGA: Recv ZSGSRD 30629
17-03-18 03:54:57.204 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 03:54:57.204 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:57.204 -07 000000608 INF: FPGA: Recv ZSGSRD 30631
17-03-18 03:54:57.214 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:57.214 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:57.214 -07 000000608 INF: FPGA: Recv ZSGSRD 30633
17-03-18 03:54:57.224 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:57.224 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:57.224 -07 000000608 INF: FPGA: Recv ZSGSRD 30629
17-03-18 03:54:57.234 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:57.234 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:57.234 -07 000000474 INF: FPGA: Recv ZSGSRD 30632
17-03-18 03:54:57.244 -07 000000618 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:57.244 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:57.244 -07 000000474 INF: FPGA: Recv ZSGSRD 30626
17-03-18 03:54:57.254 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:57.254 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:57.254 -07 000000474 INF: FPGA: Recv ZSGSRD 30626
17-03-18 03:54:57.264 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:57.264 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:57.264 -07 000000474 INF: FPGA: Recv ZSGSRD 30619
17-03-18 03:54:57.274 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:57.274 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:57.274 -07 000000474 INF: FPGA: Recv ZSGSRD 30625
17-03-18 03:54:57.284 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:57.284 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:57.284 -07 000000474 INF: FPGA: Recv ZSGSRD 30627
17-03-18 03:54:57.294 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:57.294 -07 000000618 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:54:57.294 -07 000000474 INF: FPGA: Recv ZPIEZORD 26399
17-03-18 03:54:57.304 -07 000000618 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:57.304 -07 000000618 INF: Z Motor: Piezo is near 36.4 V (nominally 0 to 100 V), expect near 45.7 V, since DAC is at 4.569 V. Piezo Error = -9.3 V.
17-03-18 03:54:57.304 -07 000000618 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.1 um, Read 10 ADC samples: Avg = 30628 (-136.3 uncal um), Error = 0.8 uncal um, Median = 30628 (-136.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 30619 (-136.2 uncal um), Max = 30633 (-136.3 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-18 03:54:57.304 -07 000000618 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30628, posNoise = 5, negNoise = 9
17-03-18 03:54:57.304 -07 000000618 INF: Z Motor: After move to -0.137070, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:54:57.304 -07 000000618 INF: Z Motor: Settle wait time = 1464 ms, measure time = 108 ms (allowed 150 ms), total time = 1572 ms
17-03-18 03:54:57.304 -07 000000618 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-18 03:54:57.354 -07 000000618 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1624 ms
17-03-18 03:54:57.354 -07 000000618 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 03:54:57.354 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:54:57.354 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:54:57.354 -07 000000590 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:54:57.354 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:54:57.354 -07 000000608 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 03:54:57.354 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:54:57.354 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 03:54:57.354 -07 000000608 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 03:54:57.364 -07 000000608 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 03:54:57.364 -07 000000608 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 03:54:57.374 -07 000000608 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-18 03:54:57.374 -07 000000608 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-18 03:54:57.374 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 03:54:57.424 -07 000000625 INF: FPGA: Recv @CAMSNAP turning led on 43
17-03-18 03:54:57.724 -07 000000501 INF: FPGA: Recv @CAMSNAP img rdy 343
17-03-18 03:54:57.724 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 343
17-03-18 03:54:57.724 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 03:54:57.724 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2404847376, 0x0, 559484976) start.
17-03-18 03:54:57.754 -07 000000611 INF: FPGA: Recv @CAMSNAP 380
17-03-18 03:54:57.754 -07 000000502 INF: FPGA: Recv CAMSNAP
17-03-18 03:54:57.754 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 379 ms to get response, and 384 ms overall
17-03-18 03:54:57.844 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2404847376, 0x0, 559484976) end. Duration was 122 ms.
17-03-18 03:54:57.844 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:54:57.844 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 03:54:57.844 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 124 ms.
17-03-18 03:54:57.864 -07 000000462 INF: Autofocus start
17-03-18 03:54:57.864 -07 000000462 INF: MeasureProfile start
17-03-18 03:54:57.864 -07 000000608 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 03:54:57.864 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-18 03:54:57.874 -07 000000608 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 03:54:57.874 -07 000000608 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 03:54:57.874 -07 000000462 INF: MeasureProfile done
17-03-18 03:54:57.874 -07 000000462 INF: X=-32  Z correction [um]=-0.1591732
17-03-18 03:54:57.874 -07 000000462 INF: Autofocus finished
17-03-18 03:54:58.074 -07 000000590 INF: FPGA: Recv FOCMRRIMG
17-03-18 03:54:58.074 -07 000000608 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 03:54:58.074 -07 000000610 INF: ------------ Scan Snapping tile 10 at Y-position 67.37158203125, Z-position -0.13708412148899. ----------
17-03-18 03:54:58.074 -07 000000610 INF: Cycle	118	Tile	10	Exposure Settings		A	412	G	198	T	198	C	412
17-03-18 03:54:58.084 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28421, sync = True, waitForSettling = True)
17-03-18 03:54:58.084 -07 000000610 INF: Z Motor: Moving to -0.130103 mm, started at -0.137084 mm, distance = 6.98 um
17-03-18 03:54:58.084 -07 000000610 INF: FPGA: Xmit ZDACW 28421\n [Z Motor]
17-03-18 03:54:58.084 -07 000000467 INF: FPGA: Recv ZDACW
17-03-18 03:54:58.094 -07 000000610 INF: FPGA: 'ZDACW 28421' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 03:54:58.094 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:54:58.094 -07 000000512 INF: FPGA: Recv ZDACR 28421
17-03-18 03:54:58.104 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:58.104 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 03:54:58.254 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:58.254 -07 000000590 INF: FPGA: Recv ZSGSRD 29543
17-03-18 03:54:58.264 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:54:58.264 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:58.264 -07 000000591 INF: FPGA: Recv ZSGSRD 29546
17-03-18 03:54:58.274 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:58.274 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:58.274 -07 000000437 INF: FPGA: Recv ZSGSRD 29541
17-03-18 03:54:58.284 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:58.284 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:58.284 -07 000000608 INF: FPGA: Recv ZSGSRD 29542
17-03-18 03:54:58.294 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:58.294 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:58.294 -07 000000618 INF: FPGA: Recv ZSGSRD 29543
17-03-18 03:54:58.304 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:58.304 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:58.304 -07 000000512 INF: FPGA: Recv ZSGSRD 29543
17-03-18 03:54:58.314 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:58.314 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:58.314 -07 000000462 INF: FPGA: Recv ZSGSRD 29546
17-03-18 03:54:58.324 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:58.324 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:58.324 -07 000000608 INF: FPGA: Recv ZSGSRD 29543
17-03-18 03:54:58.334 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:58.334 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:58.334 -07 000000467 INF: FPGA: Recv ZSGSRD 29542
17-03-18 03:54:58.344 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:54:58.344 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:54:58.354 -07 000000512 INF: FPGA: Recv ZSGSRD 29539
17-03-18 03:54:58.354 -07 000000610 INF: FPGA: 'ZSGSRD' command took 6 ms to send, 1 ms to get response, and 8 ms overall
17-03-18 03:54:58.354 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:54:58.354 -07 000000437 INF: FPGA: Recv ZPIEZORD 24996
17-03-18 03:54:58.364 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 03:54:58.364 -07 000000610 INF: Z Motor: Piezo is near 33.4 V (nominally 0 to 100 V), expect near 43.4 V, since DAC is at 4.337 V. Piezo Error = -10.0 V.
17-03-18 03:54:58.364 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.1 um, Read 10 ADC samples: Avg = 29543 (-129.3 uncal um), Error = 0.8 uncal um, Median = 29543 (-129.3 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 29539 (-129.3 uncal um), Max = 29546 (-129.4 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 03:54:58.364 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29543, posNoise = 3, negNoise = 4
17-03-18 03:54:58.364 -07 000000610 INF: Z Motor: After move to -0.130103, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:54:58.364 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 03:54:58.364 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:54:58.364 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:54:58.364 -07 000000585 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:54:58.364 -07 000000467 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 03:54:58.364 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:54:58.364 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:54:58.364 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 03:54:58.364 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 03:54:58.364 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 03:54:58.364 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 03:54:58.364 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 03:54:58.364 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 03:54:58.364 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 03:54:58.364 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 03:54:58.374 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 03:54:58.374 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 03:54:58.374 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 03:54:58.374 -07 000000467 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 03:54:58.384 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 03:54:58.384 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 03:54:58.384 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 412 412 198 198 28597 150\n [Camera]
17-03-18 03:54:58.584 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 03:54:58.804 -07 000000462 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 118, FrontChillerTemperature: 4.015368,
17-03-18 03:54:58.994 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 604
17-03-18 03:54:58.994 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 604
17-03-18 03:54:58.994 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:54:58.994 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:54:58.994 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) start.
17-03-18 03:54:58.994 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 604
17-03-18 03:54:58.994 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 604
17-03-18 03:54:58.994 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:54:58.994 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:54:58.994 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 2486767776, 0x0, 418435064) start.
17-03-18 03:54:59.184 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28597 797
17-03-18 03:54:59.334 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP turning grn on 947
17-03-18 03:54:59.374 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 2486767776, 0x0, 418435064) end. Duration was 373 ms.
17-03-18 03:54:59.374 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-18 03:54:59.374 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:54:59.374 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) end. Duration was 378 ms.
17-03-18 03:54:59.374 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-18 03:54:59.374 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:54:59.384 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 03:54:59.384 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 03:54:59.384 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-18 03:54:59.384 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-18 03:54:59.534 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1145
17-03-18 03:54:59.534 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1145
17-03-18 03:54:59.534 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:54:59.534 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:54:59.534 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 2684358704, 0x0, 391868352) start.
17-03-18 03:54:59.534 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1145
17-03-18 03:54:59.534 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1145
17-03-18 03:54:59.544 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:54:59.674 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:54:59.674 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-18 03:54:59.724 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP 1338
17-03-18 03:54:59.724 -07 000000447 INF: FPGA: Recv CAMDBLSNAP
17-03-18 03:54:59.724 -07 000000610 INF: FPGA: 'CAMDBLSNAP 412 412 198 198 28597 150' command took 2 ms to send, 1338 ms to get response, and 1344 ms overall
17-03-18 03:54:59.734 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 03:54:59.734 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 11 at Y-position 67.37158203125, Z-Position -0.130113851315179. ------
17-03-18 03:54:59.734 -07 000000447 INF: Y Motor: MoveYZ optimized starting. Moving Y to 68.2126 mm, moving Z to -0.13643 mm
17-03-18 03:54:59.734 -07 000000447 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 03:54:59.734 -07 000000437 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 03:54:59.734 -07 000000512 INF: Y Motor: Entering MoveAbsStepped (target = 109140 steps, sync = True, waitForSettling = True)
17-03-18 03:54:59.734 -07 000000591 INF: Z Motor: Entering MoveAbsStepped (DAC = 29804, sync = True, waitForSettling = False)
17-03-18 03:54:59.734 -07 000000591 INF: Z Motor: Moving to -0.136434 mm, started at -0.130114 mm, distance = -6.32 um
17-03-18 03:54:59.734 -07 000000512 INF: Y Motor: Moving to 68.2126 mm, started at 67.3716 mm, delta = 0.8410 mm
17-03-18 03:54:59.744 -07 000000591 INF: FPGA: Xmit ZDACW 29804\n [Z Motor]
17-03-18 03:54:59.754 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:54:59.944 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 2684358704, 0x0, 391868352) end. Duration was 407 ms.
17-03-18 03:54:59.944 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 408 ms.
17-03-18 03:54:59.944 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:54:59.954 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 03:54:59.954 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 414 ms.
17-03-18 03:54:59.964 -07 000000012 INF: FPGA: Recv FOCMRRCUR 
17-03-18 03:54:59.964 -07 000000012 INF: FPGA: Recv ZDACW
17-03-18 03:54:59.964 -07 000000012 INF: FPGA: Recv YRDPOS 137977
17-03-18 03:54:59.964 -07 000000437 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 223 ms to get response, and 229 ms overall
17-03-18 03:54:59.964 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 203 ms to get response, and 226 ms overall
17-03-18 03:54:59.964 -07 000000591 INF: FPGA: 'ZDACW 29804' command took 0 ms to send, 213 ms to get response, and 226 ms overall
17-03-18 03:54:59.964 -07 000000512 INF: Y Motor: Encoder = 137977 = motor step 107794.5 = 67.3716 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:54:59.964 -07 000000512 INF: Y Motor: Last commanded position = 67.3826 mm (107812.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 03:54:59.964 -07 000000512 INF: Y Motor: Moving 1346 steps-24
17-03-18 03:54:59.964 -07 000000437 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 03:54:59.974 -07 000000591 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:54:59.974 -07 000000012 INF: FPGA: Recv ZDACR 29804
17-03-18 03:54:59.984 -07 000000512 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 03:54:59.984 -07 000000591 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-18 03:54:59.984 -07 000000591 INF: Z Motor: MoveAbsStepped took 243 ms (did NOT wait for settling yet))
17-03-18 03:55:00.074 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 394 ms.
17-03-18 03:55:00.074 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-18 03:55:00.074 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:55:00.074 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:55:00.084 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 541 ms.
17-03-18 03:55:00.164 -07 000000591 INF: FPGA: Recv FOCMRRFOC
17-03-18 03:55:00.164 -07 000000437 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 197 ms to get response, and 203 ms overall
17-03-18 03:55:00.354 -07 000000012 INF: FPGA: Recv YMVTILE
17-03-18 03:55:00.354 -07 000000512 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 393 ms overall
17-03-18 03:55:00.404 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:55:00.414 -07 000000590 INF: FPGA: Recv YRDPOS 139683
17-03-18 03:55:00.414 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 03:55:00.414 -07 000000512 INF: Y Motor: Encoder = 139683 = motor step 109127.3 = 68.2046 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:55:00.414 -07 000000512 INF: Y Motor: Position error before settling (table move) = -16 encoder counts (-0.008 mm)
17-03-18 03:55:00.414 -07 000000512 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.841 mm, average velocity = 2.135 mm/sec
17-03-18 03:55:01.364 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:55:01.364 -07 000000590 INF: FPGA: Recv YRDPOS 139683
17-03-18 03:55:01.374 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:55:01.374 -07 000000512 INF: Y Motor: Encoder = 139683 = motor step 109127.3 = 68.2046 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:55:01.394 -07 000000512 INF: Y Motor: After move to 68.212608, error = -0.008018, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 03:55:01.394 -07 000000512 INF: Y Motor: Position error after settling (table move) = -16 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 03:55:01.404 -07 000000512 INF: Y Motor: Moved to 68.2046 after 1662 ms (table move)
17-03-18 03:55:01.404 -07 000000447 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136434 mm (DAC = 29804)
17-03-18 03:55:01.404 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:55:01.404 -07 000000591 INF: FPGA: Recv ZSGSRD 30530
17-03-18 03:55:01.414 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 03:55:01.414 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:55:01.414 -07 000000467 INF: FPGA: Recv ZSGSRD 30529
17-03-18 03:55:01.424 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:55:01.424 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:55:01.424 -07 000000512 INF: FPGA: Recv ZSGSRD 30531
17-03-18 03:55:01.434 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:55:01.434 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:55:01.434 -07 000000012 INF: FPGA: Recv ZSGSRD 30520
17-03-18 03:55:01.444 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:55:01.444 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:55:01.444 -07 000000512 INF: FPGA: Recv ZSGSRD 30525
17-03-18 03:55:01.454 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:55:01.454 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:55:01.454 -07 000000467 INF: FPGA: Recv ZSGSRD 30528
17-03-18 03:55:01.464 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:55:01.464 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:55:01.464 -07 000000012 INF: FPGA: Recv ZSGSRD 30520
17-03-18 03:55:01.474 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:55:01.474 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:55:01.474 -07 000000591 INF: FPGA: Recv ZSGSRD 30530
17-03-18 03:55:01.484 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:55:01.484 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:55:01.484 -07 000000512 INF: FPGA: Recv ZSGSRD 30525
17-03-18 03:55:01.494 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:55:01.494 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:55:01.494 -07 000000590 INF: FPGA: Recv ZSGSRD 30533
17-03-18 03:55:01.504 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:55:01.504 -07 000000447 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:55:01.504 -07 000000512 INF: FPGA: Recv ZPIEZORD 26307
17-03-18 03:55:01.514 -07 000000447 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:55:01.514 -07 000000447 INF: Z Motor: Piezo is near 36.2 V (nominally 0 to 100 V), expect near 45.5 V, since DAC is at 4.548 V. Piezo Error = -9.3 V.
17-03-18 03:55:01.514 -07 000000447 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.4 um, Read 10 ADC samples: Avg = 30527 (-135.6 uncal um), Error = 0.8 uncal um, Median = 30528 (-135.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 30520 (-135.6 uncal um), Max = 30533 (-135.7 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 03:55:01.514 -07 000000447 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30527, posNoise = 6, negNoise = 7
17-03-18 03:55:01.514 -07 000000447 INF: Z Motor: After move to -0.136434, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:55:01.514 -07 000000447 INF: Z Motor: Settle wait time = 1666 ms, measure time = 107 ms (allowed 150 ms), total time = 1773 ms
17-03-18 03:55:01.514 -07 000000447 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-18 03:55:01.564 -07 000000447 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1825 ms
17-03-18 03:55:01.564 -07 000000447 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 03:55:01.564 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:55:01.564 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:55:01.564 -07 000000590 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:55:01.564 -07 000000012 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 03:55:01.564 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:55:01.564 -07 000000467 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:55:01.574 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 03:55:01.574 -07 000000012 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 03:55:01.574 -07 000000012 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 03:55:01.574 -07 000000012 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 03:55:01.584 -07 000000012 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-18 03:55:01.584 -07 000000012 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 14 ms.
17-03-18 03:55:01.594 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 03:55:01.624 -07 000000591 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 03:55:01.624 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 117. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1690, R2=1759, Total=3449. Warn if over 250 bubbles per interval.
17-03-18 03:55:01.634 -07 000000512 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 03:55:01.934 -07 000000467 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 03:55:01.934 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 03:55:01.934 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 03:55:01.934 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 03:55:01.974 -07 000000590 INF: FPGA: Recv @CAMSNAP 380
17-03-18 03:55:01.974 -07 000000447 INF: FPGA: Recv CAMSNAP
17-03-18 03:55:01.974 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 374 ms to get response, and 384 ms overall
17-03-18 03:55:02.054 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 03:55:02.054 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:55:02.054 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 03:55:02.054 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 03:55:02.074 -07 000000590 INF: Autofocus start
17-03-18 03:55:02.074 -07 000000590 INF: MeasureProfile start
17-03-18 03:55:02.074 -07 000000437 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 03:55:02.074 -07 000000512 INF: FPGA: Recv FOCMRRCUR 
17-03-18 03:55:02.084 -07 000000437 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 03:55:02.084 -07 000000437 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 03:55:02.084 -07 000000590 INF: MeasureProfile done
17-03-18 03:55:02.084 -07 000000590 INF: X=16  Z correction [um]=0.0530179
17-03-18 03:55:02.084 -07 000000590 INF: Autofocus finished
17-03-18 03:55:02.284 -07 000000012 INF: FPGA: Recv FOCMRRIMG
17-03-18 03:55:02.284 -07 000000437 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 03:55:02.284 -07 000000610 INF: ------------ Scan Snapping tile 11 at Y-position 68.20458984375, Z-position -0.136435276062672. ----------
17-03-18 03:55:02.284 -07 000000610 INF: Cycle	118	Tile	11	Exposure Settings		A	412	G	198	T	198	C	412
17-03-18 03:55:02.294 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28328, sync = True, waitForSettling = True)
17-03-18 03:55:02.294 -07 000000610 INF: Z Motor: Moving to -0.129677 mm, started at -0.136435 mm, distance = 6.76 um
17-03-18 03:55:02.294 -07 000000610 INF: FPGA: Xmit ZDACW 28328\n [Z Motor]
17-03-18 03:55:02.294 -07 000000012 INF: FPGA: Recv ZDACW
17-03-18 03:55:02.304 -07 000000610 INF: FPGA: 'ZDACW 28328' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:55:02.304 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:55:02.304 -07 000000462 INF: FPGA: Recv ZDACR 28328
17-03-18 03:55:02.314 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:55:02.314 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 03:55:02.464 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:55:02.464 -07 000000437 INF: FPGA: Recv ZSGSRD 29477
17-03-18 03:55:02.474 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:55:02.474 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:55:02.474 -07 000000467 INF: FPGA: Recv ZSGSRD 29481
17-03-18 03:55:02.484 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:55:02.484 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:55:02.484 -07 000000591 INF: FPGA: Recv ZSGSRD 29470
17-03-18 03:55:02.494 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:55:02.494 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:55:02.494 -07 000000467 INF: FPGA: Recv ZSGSRD 29476
17-03-18 03:55:02.504 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 03:55:02.504 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:55:02.504 -07 000000590 INF: FPGA: Recv ZSGSRD 29480
17-03-18 03:55:02.514 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:55:02.514 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:55:02.514 -07 000000467 INF: FPGA: Recv ZSGSRD 29477
17-03-18 03:55:02.524 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:55:02.524 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:55:02.524 -07 000000462 INF: FPGA: Recv ZSGSRD 29482
17-03-18 03:55:02.534 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:55:02.534 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:55:02.534 -07 000000447 INF: FPGA: Recv ZSGSRD 29472
17-03-18 03:55:02.544 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:55:02.544 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:55:02.544 -07 000000590 INF: FPGA: Recv ZSGSRD 29476
17-03-18 03:55:02.554 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:55:02.554 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:55:02.554 -07 000000467 INF: FPGA: Recv ZSGSRD 29476
17-03-18 03:55:02.564 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:55:02.564 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:55:02.564 -07 000000437 INF: FPGA: Recv ZPIEZORD 24906
17-03-18 03:55:02.574 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:55:02.574 -07 000000610 INF: Z Motor: Piezo is near 33.2 V (nominally 0 to 100 V), expect near 43.2 V, since DAC is at 4.323 V. Piezo Error = -10.0 V.
17-03-18 03:55:02.574 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.7 um, Read 10 ADC samples: Avg = 29477 (-128.9 uncal um), Error = 0.8 uncal um, Median = 29476 (-128.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29470 (-128.9 uncal um), Max = 29482 (-128.9 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 03:55:02.574 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29477, posNoise = 5, negNoise = 7
17-03-18 03:55:02.574 -07 000000610 INF: Z Motor: After move to -0.129677, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:55:02.574 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 03:55:02.574 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:55:02.574 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:55:02.574 -07 000000467 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:55:02.574 -07 000000591 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:55:02.574 -07 000000012 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 03:55:02.574 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:55:02.574 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 03:55:02.574 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 03:55:02.574 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 03:55:02.574 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 03:55:02.574 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 03:55:02.574 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 03:55:02.574 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 03:55:02.574 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 03:55:02.584 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 03:55:02.584 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 03:55:02.584 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 03:55:02.584 -07 000000012 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 12 ms.
17-03-18 03:55:02.594 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 03:55:02.594 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 03:55:02.594 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 412 412 198 198 28505 150\n [Camera]
17-03-18 03:55:02.794 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 03:55:03.204 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 604
17-03-18 03:55:03.204 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 604
17-03-18 03:55:03.204 -07 000000437 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:55:03.204 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 604
17-03-18 03:55:03.204 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 604
17-03-18 03:55:03.214 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:55:03.214 -07 000000437 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:55:03.214 -07 000000437 INF: Camera: sBCa_ReadImage(785074288, 2334002848, 0x0, 391868352) start.
17-03-18 03:55:03.214 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:55:03.214 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-18 03:55:03.394 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28505 797
17-03-18 03:55:03.544 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning grn on 947
17-03-18 03:55:03.594 -07 000000437 INF: Camera: sBCa_ReadImage(785074288, 2334002848, 0x0, 391868352) end. Duration was 384 ms.
17-03-18 03:55:03.594 -07 000000437 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-18 03:55:03.594 -07 000000437 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:55:03.594 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 382 ms.
17-03-18 03:55:03.594 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-18 03:55:03.594 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:55:03.604 -07 000000437 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 03:55:03.604 -07 000000437 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-18 03:55:03.604 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 03:55:03.604 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 03:55:03.744 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1145
17-03-18 03:55:03.744 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1145
17-03-18 03:55:03.744 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:55:03.754 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1145
17-03-18 03:55:03.754 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1145
17-03-18 03:55:03.754 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:55:03.874 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:55:03.874 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 2585563240, 0x0, 391868352) start.
17-03-18 03:55:03.874 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:55:03.874 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-18 03:55:03.934 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP 1338
17-03-18 03:55:03.934 -07 000000462 INF: FPGA: Recv CAMDBLSNAP
17-03-18 03:55:03.934 -07 000000610 INF: FPGA: 'CAMDBLSNAP 412 412 198 198 28505 150' command took 2 ms to send, 1339 ms to get response, and 1345 ms overall
17-03-18 03:55:03.944 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 03:55:03.944 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 12 at Y-position 68.20458984375, Z-Position -0.129689853313823. ------
17-03-18 03:55:03.944 -07 000000467 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 03:55:03.944 -07 000000462 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.0426 mm, moving Z to -0.13635 mm
17-03-18 03:55:03.944 -07 000000462 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 03:55:03.944 -07 000000590 INF: Y Motor: Entering MoveAbsStepped (target = 110468 steps, sync = True, waitForSettling = True)
17-03-18 03:55:03.944 -07 000000590 INF: Y Motor: Moving to 69.0426 mm, started at 68.2046 mm, delta = 0.8380 mm
17-03-18 03:55:03.944 -07 000000437 INF: Z Motor: Entering MoveAbsStepped (DAC = 29786, sync = True, waitForSettling = False)
17-03-18 03:55:03.944 -07 000000437 INF: Z Motor: Moving to -0.136352 mm, started at -0.129690 mm, distance = -6.66 um
17-03-18 03:55:03.954 -07 000000437 INF: FPGA: Xmit ZDACW 29786\n [Z Motor]
17-03-18 03:55:03.964 -07 000000590 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:55:04.274 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 398 ms.
17-03-18 03:55:04.274 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 03:55:04.274 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:55:04.274 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 2585563240, 0x0, 391868352) end. Duration was 400 ms.
17-03-18 03:55:04.274 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 03:55:04.274 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:55:04.274 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 03:55:04.284 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 03:55:04.284 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 532 ms.
17-03-18 03:55:04.284 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 534 ms.
17-03-18 03:55:04.294 -07 000000591 INF: FPGA: Recv FOCMRRCUR 
17-03-18 03:55:04.294 -07 000000591 INF: FPGA: Recv ZDACW
17-03-18 03:55:04.294 -07 000000467 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 340 ms to get response, and 346 ms overall
17-03-18 03:55:04.294 -07 000000591 INF: FPGA: Recv YRDPOS 139684
17-03-18 03:55:04.294 -07 000000590 INF: FPGA: 'YRDPOS' command took 0 ms to send, 320 ms to get response, and 343 ms overall
17-03-18 03:55:04.294 -07 000000590 INF: Y Motor: Encoder = 139684 = motor step 109128.1 = 68.2051 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:55:04.294 -07 000000437 INF: FPGA: 'ZDACW 29786' command took 0 ms to send, 330 ms to get response, and 343 ms overall
17-03-18 03:55:04.294 -07 000000591 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 118, FrontChillerTemperature: 4.004458,
17-03-18 03:55:04.294 -07 000000590 INF: Y Motor: Last commanded position = 68.2126 mm (109140.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 03:55:04.294 -07 000000590 INF: Y Motor: Moving 1340 steps-16
17-03-18 03:55:04.314 -07 000000467 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 03:55:04.324 -07 000000437 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:55:04.324 -07 000000512 INF: FPGA: Recv ZDACR 29786
17-03-18 03:55:04.334 -07 000000437 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 38 ms overall
17-03-18 03:55:04.334 -07 000000437 INF: Z Motor: MoveAbsStepped took 383 ms (did NOT wait for settling yet))
17-03-18 03:55:04.334 -07 000000590 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 03:55:04.514 -07 000000591 INF: FPGA: Recv FOCMRRFOC
17-03-18 03:55:04.514 -07 000000467 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 221 ms overall
17-03-18 03:55:04.714 -07 000000512 INF: FPGA: Recv YMVTILE
17-03-18 03:55:04.714 -07 000000590 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 370 ms to get response, and 413 ms overall
17-03-18 03:55:04.754 -07 000000590 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:55:04.764 -07 000000437 INF: FPGA: Recv YRDPOS 141366
17-03-18 03:55:04.764 -07 000000590 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 03:55:04.764 -07 000000590 INF: Y Motor: Encoder = 141366 = motor step 110442.2 = 69.0264 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:55:04.764 -07 000000590 INF: Y Motor: Position error before settling (table move) = -33 encoder counts (-0.016 mm)
17-03-18 03:55:04.764 -07 000000590 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 414 ms, distance = 0.838 mm, average velocity = 2.024 mm/sec
17-03-18 03:55:05.714 -07 000000590 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:55:05.714 -07 000000437 INF: FPGA: Recv YRDPOS 141366
17-03-18 03:55:05.724 -07 000000590 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:55:05.724 -07 000000590 INF: Y Motor: Encoder = 141366 = motor step 110442.2 = 69.0264 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:55:05.744 -07 000000590 INF: Y Motor: After move to 69.042610, error = -0.016243, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 03:55:05.744 -07 000000590 INF: Y Motor: Position error after settling (table move) = -33 encoder counts (-0.016 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 03:55:05.744 -07 000000590 INF: Y Motor: Moved to 69.0264 after 1803 ms (table move)
17-03-18 03:55:05.754 -07 000000462 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136352 mm (DAC = 29786)
17-03-18 03:55:05.754 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:55:05.754 -07 000000512 INF: FPGA: Recv ZSGSRD 30517
17-03-18 03:55:05.764 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 03:55:05.764 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:55:05.764 -07 000000590 INF: FPGA: Recv ZSGSRD 30516
17-03-18 03:55:05.774 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:55:05.774 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:55:05.774 -07 000000591 INF: FPGA: Recv ZSGSRD 30509
17-03-18 03:55:05.784 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:55:05.784 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:55:05.784 -07 000000467 INF: FPGA: Recv ZSGSRD 30510
17-03-18 03:55:05.794 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:55:05.794 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:55:05.794 -07 000000512 INF: FPGA: Recv ZSGSRD 30515
17-03-18 03:55:05.804 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 03:55:05.804 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:55:05.804 -07 000000512 INF: FPGA: Recv ZSGSRD 30507
17-03-18 03:55:05.814 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:55:05.814 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:55:05.814 -07 000000590 INF: FPGA: Recv ZSGSRD 30518
17-03-18 03:55:05.824 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:55:05.824 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:55:05.824 -07 000000591 INF: FPGA: Recv ZSGSRD 30515
17-03-18 03:55:05.834 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:55:05.834 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:55:05.834 -07 000000467 INF: FPGA: Recv ZSGSRD 30506
17-03-18 03:55:05.844 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:55:05.844 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:55:05.844 -07 000000591 INF: FPGA: Recv ZSGSRD 30514
17-03-18 03:55:05.854 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:55:05.854 -07 000000462 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:55:05.854 -07 000000590 INF: FPGA: Recv ZPIEZORD 26325
17-03-18 03:55:05.864 -07 000000462 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:55:05.864 -07 000000462 INF: Z Motor: Piezo is near 36.2 V (nominally 0 to 100 V), expect near 45.5 V, since DAC is at 4.545 V. Piezo Error = -9.2 V.
17-03-18 03:55:05.864 -07 000000462 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.4 um, Read 10 ADC samples: Avg = 30513 (-135.6 uncal um), Error = 0.8 uncal um, Median = 30514 (-135.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 30506 (-135.5 uncal um), Max = 30518 (-135.6 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 03:55:05.864 -07 000000462 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30513, posNoise = 5, negNoise = 7
17-03-18 03:55:05.864 -07 000000462 INF: Z Motor: After move to -0.136352, error = 0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:55:05.864 -07 000000462 INF: Z Motor: Settle wait time = 1806 ms, measure time = 107 ms (allowed 150 ms), total time = 1913 ms
17-03-18 03:55:05.864 -07 000000462 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-18 03:55:05.914 -07 000000462 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1966 ms
17-03-18 03:55:05.914 -07 000000462 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 03:55:05.914 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:55:05.914 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:55:05.914 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 03:55:05.914 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:55:05.914 -07 000000467 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:55:05.914 -07 000000590 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:55:05.914 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 03:55:05.914 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 03:55:05.924 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 03:55:05.924 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 03:55:05.924 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 03:55:05.924 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-18 03:55:05.934 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 03:55:05.974 -07 000000462 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 03:55:06.274 -07 000000590 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 03:55:06.274 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 03:55:06.274 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 03:55:06.274 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 03:55:06.314 -07 000000501 INF: FPGA: Recv @CAMSNAP 380
17-03-18 03:55:06.314 -07 000000462 INF: FPGA: Recv CAMSNAP
17-03-18 03:55:06.314 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 386 ms overall
17-03-18 03:55:06.394 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 03:55:06.394 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:55:06.394 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 03:55:06.394 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 03:55:06.414 -07 000000591 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 03:55:06.414 -07 000000590 INF: Autofocus start
17-03-18 03:55:06.414 -07 000000590 INF: MeasureProfile start
17-03-18 03:55:06.414 -07 000000462 INF: FPGA: Recv FOCMRRCUR 
17-03-18 03:55:06.424 -07 000000591 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 03:55:06.424 -07 000000591 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 03:55:06.424 -07 000000590 INF: MeasureProfile done
17-03-18 03:55:06.424 -07 000000590 INF: X=9  Z correction [um]=0.01934518
17-03-18 03:55:06.424 -07 000000590 INF: Autofocus finished
17-03-18 03:55:06.614 -07 000000467 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 03:55:06.624 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 117. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1690, R2=1759, Total=3449. Warn if over 250 bubbles per interval.
17-03-18 03:55:06.624 -07 000000590 INF: FPGA: Recv FOCMRRIMG
17-03-18 03:55:06.624 -07 000000591 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 203 ms overall
17-03-18 03:55:06.624 -07 000000610 INF: ------------ Scan Snapping tile 12 at Y-position 69.0263671875, Z-position -0.136345337092687. ----------
17-03-18 03:55:06.624 -07 000000610 INF: Cycle	118	Tile	12	Exposure Settings		A	412	G	198	T	198	C	412
17-03-18 03:55:06.634 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28302, sync = True, waitForSettling = True)
17-03-18 03:55:06.634 -07 000000610 INF: Z Motor: Moving to -0.129558 mm, started at -0.136345 mm, distance = 6.79 um
17-03-18 03:55:06.634 -07 000000610 INF: FPGA: Xmit ZDACW 28302\n [Z Motor]
17-03-18 03:55:06.634 -07 000000591 INF: FPGA: Recv ZDACW
17-03-18 03:55:06.644 -07 000000610 INF: FPGA: 'ZDACW 28302' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 03:55:06.644 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:55:06.644 -07 000000467 INF: FPGA: Recv ZDACR 28302
17-03-18 03:55:06.654 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:55:06.654 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 03:55:06.804 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:55:06.804 -07 000000591 INF: FPGA: Recv ZSGSRD 29455
17-03-18 03:55:06.814 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:55:06.814 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:55:06.814 -07 000000590 INF: FPGA: Recv ZSGSRD 29455
17-03-18 03:55:06.824 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:55:06.824 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:55:06.824 -07 000000512 INF: FPGA: Recv ZSGSRD 29456
17-03-18 03:55:06.834 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:55:06.834 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:55:06.834 -07 000000437 INF: FPGA: Recv ZSGSRD 29459
17-03-18 03:55:06.844 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:55:06.844 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:55:06.844 -07 000000462 INF: FPGA: Recv ZSGSRD 29460
17-03-18 03:55:06.854 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:55:06.854 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:55:06.854 -07 000000437 INF: FPGA: Recv ZSGSRD 29452
17-03-18 03:55:06.864 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:55:06.864 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:55:06.864 -07 000000512 INF: FPGA: Recv ZSGSRD 29457
17-03-18 03:55:06.874 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:55:06.874 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:55:06.874 -07 000000437 INF: FPGA: Recv ZSGSRD 29464
17-03-18 03:55:06.884 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:55:06.884 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:55:06.884 -07 000000512 INF: FPGA: Recv ZSGSRD 29454
17-03-18 03:55:06.894 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:55:06.894 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:55:06.894 -07 000000437 INF: FPGA: Recv ZSGSRD 29455
17-03-18 03:55:06.904 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:55:06.904 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:55:06.904 -07 000000512 INF: FPGA: Recv ZPIEZORD 24929
17-03-18 03:55:06.914 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:55:06.914 -07 000000610 INF: Z Motor: Piezo is near 33.3 V (nominally 0 to 100 V), expect near 43.2 V, since DAC is at 4.319 V. Piezo Error = -9.9 V.
17-03-18 03:55:06.914 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.6 um, Read 10 ADC samples: Avg = 29457 (-128.8 uncal um), Error = 0.8 uncal um, Median = 29456 (-128.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29452 (-128.8 uncal um), Max = 29464 (-128.8 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 03:55:06.914 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29457, posNoise = 7, negNoise = 5
17-03-18 03:55:06.914 -07 000000610 INF: Z Motor: After move to -0.129558, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:55:06.914 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 03:55:06.914 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:55:06.914 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:55:06.914 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:55:06.914 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 03:55:06.914 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:55:06.914 -07 000000585 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:55:06.914 -07 000000625 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 03:55:06.914 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 03:55:06.914 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 03:55:06.914 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 03:55:06.914 -07 000000625 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 03:55:06.914 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 03:55:06.924 -07 000000625 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 03:55:06.924 -07 000000625 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 03:55:06.924 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 03:55:06.924 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 03:55:06.934 -07 000000625 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 03:55:06.934 -07 000000625 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 03:55:06.934 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 03:55:06.934 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 03:55:06.934 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 412 412 198 198 28479 150\n [Camera]
17-03-18 03:55:07.134 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 03:55:07.544 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 604
17-03-18 03:55:07.544 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 604
17-03-18 03:55:07.544 -07 000000611 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:55:07.544 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 604
17-03-18 03:55:07.544 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 604
17-03-18 03:55:07.544 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:55:07.554 -07 000000611 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:55:07.554 -07 000000611 INF: Camera: sBCa_ReadImage(785074288, 2334002848, 0x0, 391868352) start.
17-03-18 03:55:07.554 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:55:07.554 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-18 03:55:07.734 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28479 797
17-03-18 03:55:07.884 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP turning grn on 947
17-03-18 03:55:07.934 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 377 ms.
17-03-18 03:55:07.934 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-18 03:55:07.934 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:55:07.934 -07 000000611 INF: Camera: sBCa_ReadImage(785074288, 2334002848, 0x0, 391868352) end. Duration was 382 ms.
17-03-18 03:55:07.934 -07 000000611 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-18 03:55:07.934 -07 000000611 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:55:07.934 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 03:55:07.934 -07 000000611 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 03:55:07.934 -07 000000611 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-18 03:55:07.944 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-18 03:55:08.084 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1145
17-03-18 03:55:08.084 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1145
17-03-18 03:55:08.084 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1145
17-03-18 03:55:08.084 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1145
17-03-18 03:55:08.084 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:55:08.094 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:55:08.094 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:55:08.094 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 03:55:08.094 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:55:08.094 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 2620985504, 0x0, 391868352) start.
17-03-18 03:55:08.274 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP 1338
17-03-18 03:55:08.274 -07 000000585 INF: FPGA: Recv CAMDBLSNAP
17-03-18 03:55:08.274 -07 000000610 INF: FPGA: 'CAMDBLSNAP 412 412 198 198 28479 150' command took 2 ms to send, 1338 ms to get response, and 1345 ms overall
17-03-18 03:55:08.284 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 03:55:08.284 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 13 at Y-position 69.0263671875, Z-Position -0.129561369070988. ------
17-03-18 03:55:08.284 -07 000000618 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 03:55:08.284 -07 000000502 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.8726 mm, moving Z to -0.13601 mm
17-03-18 03:55:08.284 -07 000000502 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 03:55:08.284 -07 000000585 INF: FPGA: Recv FOCMRRCUR 
17-03-18 03:55:08.284 -07 000000512 INF: Z Motor: Entering MoveAbsStepped (DAC = 29710, sync = True, waitForSettling = False)
17-03-18 03:55:08.284 -07 000000512 INF: Z Motor: Moving to -0.136004 mm, started at -0.129561 mm, distance = -6.44 um
17-03-18 03:55:08.284 -07 000000590 INF: Y Motor: Entering MoveAbsStepped (target = 111796 steps, sync = True, waitForSettling = True)
17-03-18 03:55:08.284 -07 000000590 INF: Y Motor: Moving to 69.8726 mm, started at 69.0264 mm, delta = 0.8462 mm
17-03-18 03:55:08.294 -07 000000618 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 03:55:08.294 -07 000000512 INF: FPGA: Xmit ZDACW 29710\n [Z Motor]
17-03-18 03:55:08.294 -07 000000585 INF: FPGA: Recv ZDACW
17-03-18 03:55:08.304 -07 000000512 INF: FPGA: 'ZDACW 29710' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-18 03:55:08.304 -07 000000590 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:55:08.304 -07 000000625 INF: FPGA: Recv YRDPOS 141367
17-03-18 03:55:08.314 -07 000000590 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-18 03:55:08.314 -07 000000590 INF: Y Motor: Encoder = 141367 = motor step 110443.0 = 69.0269 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:55:08.314 -07 000000618 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 03:55:08.314 -07 000000590 INF: Y Motor: Last commanded position = 69.0426 mm (110468.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 03:55:08.314 -07 000000590 INF: Y Motor: Moving 1353 steps-33
17-03-18 03:55:08.324 -07 000000512 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:55:08.324 -07 000000625 INF: FPGA: Recv ZDACR 29710
17-03-18 03:55:08.334 -07 000000590 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 03:55:08.334 -07 000000512 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 03:55:08.334 -07 000000512 INF: Z Motor: MoveAbsStepped took 43 ms (did NOT wait for settling yet))
17-03-18 03:55:08.494 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 400 ms.
17-03-18 03:55:08.494 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 2620985504, 0x0, 391868352) end. Duration was 395 ms.
17-03-18 03:55:08.494 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 03:55:08.494 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:55:08.494 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 03:55:08.494 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:55:08.494 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 03:55:08.494 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-18 03:55:08.494 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 03:55:08.504 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-18 03:55:08.514 -07 000000625 INF: FPGA: Recv FOCMRRFOC
17-03-18 03:55:08.514 -07 000000618 INF: FPGA: 'FOCMRRFOC' command took 3 ms to send, 195 ms to get response, and 225 ms overall
17-03-18 03:55:08.714 -07 000000512 INF: FPGA: Recv YMVTILE
17-03-18 03:55:08.714 -07 000000590 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 371 ms to get response, and 394 ms overall
17-03-18 03:55:08.754 -07 000000590 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:55:08.764 -07 000000611 INF: FPGA: Recv YRDPOS 143079
17-03-18 03:55:08.764 -07 000000590 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 03:55:08.764 -07 000000590 INF: Y Motor: Encoder = 143079 = motor step 111780.5 = 69.8628 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:55:08.764 -07 000000590 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-18 03:55:08.764 -07 000000590 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.846 mm, average velocity = 2.148 mm/sec
17-03-18 03:55:09.684 -07 000000437 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 118, FrontChillerTemperature: 3.997626,
17-03-18 03:55:09.714 -07 000000590 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:55:09.714 -07 000000437 INF: FPGA: Recv YRDPOS 143079
17-03-18 03:55:09.724 -07 000000590 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:55:09.724 -07 000000590 INF: Y Motor: Encoder = 143079 = motor step 111780.5 = 69.8628 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:55:09.754 -07 000000590 INF: Y Motor: After move to 69.872612, error = -0.009819, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 03:55:09.754 -07 000000590 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 03:55:09.754 -07 000000590 INF: Y Motor: Moved to 69.8628 after 1464 ms (table move)
17-03-18 03:55:09.754 -07 000000502 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136004 mm (DAC = 29710)
17-03-18 03:55:09.754 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:55:09.754 -07 000000501 INF: FPGA: Recv ZSGSRD 30466
17-03-18 03:55:09.764 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 03:55:09.764 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:55:09.764 -07 000000590 INF: FPGA: Recv ZSGSRD 30457
17-03-18 03:55:09.774 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:55:09.774 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:55:09.774 -07 000000501 INF: FPGA: Recv ZSGSRD 30456
17-03-18 03:55:09.784 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:55:09.784 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:55:09.784 -07 000000501 INF: FPGA: Recv ZSGSRD 30453
17-03-18 03:55:09.794 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:55:09.794 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:55:09.794 -07 000000501 INF: FPGA: Recv ZSGSRD 30459
17-03-18 03:55:09.804 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:55:09.804 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:55:09.804 -07 000000590 INF: FPGA: Recv ZSGSRD 30466
17-03-18 03:55:09.814 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:55:09.814 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:55:09.814 -07 000000501 INF: FPGA: Recv ZSGSRD 30464
17-03-18 03:55:09.824 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:55:09.824 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:55:09.824 -07 000000437 INF: FPGA: Recv ZSGSRD 30456
17-03-18 03:55:09.834 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:55:09.834 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:55:09.834 -07 000000501 INF: FPGA: Recv ZSGSRD 30460
17-03-18 03:55:09.844 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:55:09.844 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:55:09.844 -07 000000437 INF: FPGA: Recv ZSGSRD 30456
17-03-18 03:55:09.854 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:55:09.854 -07 000000502 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:55:09.854 -07 000000590 INF: FPGA: Recv ZPIEZORD 26270
17-03-18 03:55:09.864 -07 000000502 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:55:09.864 -07 000000502 INF: Z Motor: Piezo is near 36.1 V (nominally 0 to 100 V), expect near 45.3 V, since DAC is at 4.533 V. Piezo Error = -9.2 V.
17-03-18 03:55:09.864 -07 000000502 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.0 um, Read 10 ADC samples: Avg = 30459 (-135.2 uncal um), Error = 0.8 uncal um, Median = 30458 (-135.2 uncal um), StdDev = 5 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 30453 (-135.2 uncal um), Max = 30466 (-135.3 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 03:55:09.864 -07 000000502 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30459, posNoise = 7, negNoise = 6
17-03-18 03:55:09.864 -07 000000502 INF: Z Motor: After move to -0.136004, error = 0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:55:09.864 -07 000000502 INF: Z Motor: Settle wait time = 1469 ms, measure time = 104 ms (allowed 150 ms), total time = 1573 ms
17-03-18 03:55:09.864 -07 000000502 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-18 03:55:09.914 -07 000000502 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1626 ms
17-03-18 03:55:09.914 -07 000000502 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 03:55:09.914 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:55:09.914 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:55:09.924 -07 000000611 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:55:09.924 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:55:09.924 -07 000000502 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 03:55:09.924 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:55:09.924 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 03:55:09.924 -07 000000502 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 03:55:09.924 -07 000000502 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 03:55:09.924 -07 000000502 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 03:55:09.934 -07 000000502 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 03:55:09.934 -07 000000502 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-18 03:55:09.934 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 03:55:09.984 -07 000000590 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 03:55:10.284 -07 000000501 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 03:55:10.284 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 03:55:10.284 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 03:55:10.404 -07 000000437 INF: FPGA: Recv @CAMSNAP 380
17-03-18 03:55:10.404 -07 000000437 INF: FPGA: Recv CAMSNAP
17-03-18 03:55:10.404 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 460 ms to get response, and 464 ms overall
17-03-18 03:55:10.404 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 618216056, 0x0, 559484976) start.
17-03-18 03:55:10.514 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 618216056, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 03:55:10.514 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:55:10.514 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 03:55:10.514 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 236 ms.
17-03-18 03:55:10.604 -07 000000590 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 03:55:10.604 -07 000000502 INF: Autofocus start
17-03-18 03:55:10.604 -07 000000502 INF: MeasureProfile start
17-03-18 03:55:10.604 -07 000000611 INF: FPGA: Recv FOCMRRCUR 
17-03-18 03:55:10.614 -07 000000590 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 03:55:10.614 -07 000000590 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 03:55:10.614 -07 000000502 INF: MeasureProfile done
17-03-18 03:55:10.614 -07 000000502 INF: X=0  Z correction [um]=-0.02394831
17-03-18 03:55:10.614 -07 000000502 INF: Autofocus finished
17-03-18 03:55:10.814 -07 000000501 INF: FPGA: Recv FOCMRRIMG
17-03-18 03:55:10.814 -07 000000590 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 03:55:10.814 -07 000000610 INF: ------------ Scan Snapping tile 13 at Y-position 69.86279296875, Z-position -0.135998429637032. ----------
17-03-18 03:55:10.824 -07 000000610 INF: Cycle	118	Tile	13	Exposure Settings		A	412	G	198	T	198	C	412
17-03-18 03:55:10.824 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28218, sync = True, waitForSettling = True)
17-03-18 03:55:10.824 -07 000000610 INF: Z Motor: Moving to -0.129174 mm, started at -0.135998 mm, distance = 6.82 um
17-03-18 03:55:10.824 -07 000000610 INF: FPGA: Xmit ZDACW 28218\n [Z Motor]
17-03-18 03:55:10.824 -07 000000608 INF: FPGA: Recv ZDACW
17-03-18 03:55:10.834 -07 000000610 INF: FPGA: 'ZDACW 28218' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 03:55:10.834 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:55:10.834 -07 000000502 INF: FPGA: Recv ZDACR 28218
17-03-18 03:55:10.844 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:55:10.844 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 03:55:10.994 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:55:10.994 -07 000000437 INF: FPGA: Recv ZSGSRD 29403
17-03-18 03:55:11.004 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:55:11.004 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:55:11.004 -07 000000501 INF: FPGA: Recv ZSGSRD 29399
17-03-18 03:55:11.014 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:55:11.014 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:55:11.014 -07 000000502 INF: FPGA: Recv ZSGSRD 29394
17-03-18 03:55:11.024 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:55:11.024 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:55:11.024 -07 000000501 INF: FPGA: Recv ZSGSRD 29393
17-03-18 03:55:11.034 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:55:11.034 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:55:11.034 -07 000000590 INF: FPGA: Recv ZSGSRD 29403
17-03-18 03:55:11.044 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:55:11.044 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:55:11.044 -07 000000474 INF: FPGA: Recv ZSGSRD 29400
17-03-18 03:55:11.054 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:55:11.054 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:55:11.054 -07 000000501 INF: FPGA: Recv ZSGSRD 29399
17-03-18 03:55:11.064 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:55:11.064 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:55:11.064 -07 000000474 INF: FPGA: Recv ZSGSRD 29396
17-03-18 03:55:11.074 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:55:11.074 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:55:11.074 -07 000000502 INF: FPGA: Recv ZSGSRD 29396
17-03-18 03:55:11.084 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:55:11.084 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:55:11.084 -07 000000611 INF: FPGA: Recv ZSGSRD 29398
17-03-18 03:55:11.094 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:55:11.094 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:55:11.094 -07 000000590 INF: FPGA: Recv ZPIEZORD 24857
17-03-18 03:55:11.104 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:55:11.104 -07 000000610 INF: Z Motor: Piezo is near 33.1 V (nominally 0 to 100 V), expect near 43.1 V, since DAC is at 4.306 V. Piezo Error = -10.0 V.
17-03-18 03:55:11.104 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.2 um, Read 10 ADC samples: Avg = 29398 (-128.4 uncal um), Error = 0.8 uncal um, Median = 29398 (-128.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29393 (-128.4 uncal um), Max = 29403 (-128.4 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 03:55:11.104 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29398, posNoise = 5, negNoise = 5
17-03-18 03:55:11.104 -07 000000610 INF: Z Motor: After move to -0.129174, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:55:11.104 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 03:55:11.104 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:55:11.104 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:55:11.104 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:55:11.104 -07 000000611 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:55:11.104 -07 000000474 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 03:55:11.104 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:55:11.104 -07 000000590 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 03:55:11.104 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 03:55:11.104 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 03:55:11.104 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 03:55:11.104 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 03:55:11.104 -07 000000590 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 03:55:11.114 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 03:55:11.114 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 03:55:11.114 -07 000000590 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 03:55:11.114 -07 000000590 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 03:55:11.124 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 03:55:11.124 -07 000000474 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 03:55:11.124 -07 000000590 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 03:55:11.124 -07 000000590 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 03:55:11.124 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 412 412 198 198 28395 150\n [Camera]
17-03-18 03:55:11.324 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP turning red on 194
17-03-18 03:55:11.624 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 03:55:11.624 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 117. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1690, R2=1759, Total=3449. Warn if over 250 bubbles per interval.
17-03-18 03:55:11.734 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 606
17-03-18 03:55:11.734 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 606
17-03-18 03:55:11.744 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:55:11.744 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 606
17-03-18 03:55:11.744 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 606
17-03-18 03:55:11.744 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:55:11.744 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:55:11.744 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-18 03:55:11.744 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:55:11.744 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2334002848, 0x0, 418435064) start.
17-03-18 03:55:11.934 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28395 797
17-03-18 03:55:12.074 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP turning grn on 947
17-03-18 03:55:12.144 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 396 ms.
17-03-18 03:55:12.144 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 03:55:12.144 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:55:12.144 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2334002848, 0x0, 418435064) end. Duration was 393 ms.
17-03-18 03:55:12.144 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-18 03:55:12.144 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:55:12.144 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 03:55:12.144 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-18 03:55:12.144 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 03:55:12.154 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-18 03:55:12.274 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1145
17-03-18 03:55:12.274 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1145
17-03-18 03:55:12.274 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:55:12.284 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1145
17-03-18 03:55:12.284 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1145
17-03-18 03:55:12.284 -07 000000611 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:55:12.394 -07 000000611 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:55:12.394 -07 000000611 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) start.
17-03-18 03:55:12.394 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:55:12.394 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) start.
17-03-18 03:55:12.464 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP 1337
17-03-18 03:55:12.474 -07 000000012 INF: FPGA: Recv CAMDBLSNAP
17-03-18 03:55:12.474 -07 000000610 INF: FPGA: 'CAMDBLSNAP 412 412 198 198 28395 150' command took 4 ms to send, 1340 ms to get response, and 1345 ms overall
17-03-18 03:55:12.474 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 03:55:12.474 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 14 at Y-position 69.86279296875, Z-Position -0.129182340554624. ------
17-03-18 03:55:12.474 -07 000000590 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 03:55:12.474 -07 000000502 INF: Y Motor: MoveYZ optimized starting. Moving Y to 70.7026 mm, moving Z to -0.13555 mm
17-03-18 03:55:12.474 -07 000000502 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 03:55:12.474 -07 000000608 INF: Y Motor: Entering MoveAbsStepped (target = 113124 steps, sync = True, waitForSettling = True)
17-03-18 03:55:12.474 -07 000000608 INF: Y Motor: Moving to 70.7026 mm, started at 69.8628 mm, delta = 0.8398 mm
17-03-18 03:55:12.474 -07 000000012 INF: Z Motor: Entering MoveAbsStepped (DAC = 29610, sync = True, waitForSettling = False)
17-03-18 03:55:12.474 -07 000000012 INF: Z Motor: Moving to -0.135546 mm, started at -0.129182 mm, distance = -6.36 um
17-03-18 03:55:12.474 -07 000000437 INF: FPGA: Recv FOCMRRCUR 
17-03-18 03:55:12.484 -07 000000590 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 03:55:12.484 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:55:12.484 -07 000000591 INF: FPGA: Recv YRDPOS 143079
17-03-18 03:55:12.494 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-18 03:55:12.494 -07 000000012 INF: FPGA: Xmit ZDACW 29610\n [Z Motor]
17-03-18 03:55:12.494 -07 000000608 INF: Y Motor: Encoder = 143079 = motor step 111780.5 = 69.8628 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:55:12.494 -07 000000608 INF: Y Motor: Last commanded position = 69.8726 mm (111796.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 03:55:12.494 -07 000000608 INF: Y Motor: Moving 1344 steps-20
17-03-18 03:55:12.494 -07 000000437 INF: FPGA: Recv ZDACW
17-03-18 03:55:12.504 -07 000000590 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 03:55:12.504 -07 000000012 INF: FPGA: 'ZDACW 29610' command took 0 ms to send, 0 ms to get response, and 21 ms overall
17-03-18 03:55:12.514 -07 000000608 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 03:55:12.524 -07 000000012 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:55:12.524 -07 000000591 INF: FPGA: Recv ZDACR 29610
17-03-18 03:55:12.534 -07 000000012 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 03:55:12.534 -07 000000012 INF: Z Motor: MoveAbsStepped took 52 ms (did NOT wait for settling yet))
17-03-18 03:55:12.704 -07 000000501 INF: FPGA: Recv FOCMRRFOC
17-03-18 03:55:12.704 -07 000000590 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 03:55:12.794 -07 000000611 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) end. Duration was 399 ms.
17-03-18 03:55:12.794 -07 000000611 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 03:55:12.794 -07 000000611 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:55:12.794 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) end. Duration was 398 ms.
17-03-18 03:55:12.794 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 03:55:12.794 -07 000000474 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:55:12.804 -07 000000611 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 03:55:12.804 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 03:55:12.804 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 521 ms.
17-03-18 03:55:12.804 -07 000000611 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 524 ms.
17-03-18 03:55:12.884 -07 000000437 INF: FPGA: Recv YMVTILE
17-03-18 03:55:12.884 -07 000000608 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 03:55:12.934 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:55:12.934 -07 000000590 INF: FPGA: Recv YRDPOS 144769
17-03-18 03:55:12.944 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 03:55:12.944 -07 000000608 INF: Y Motor: Encoder = 144769 = motor step 113100.8 = 70.6880 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:55:12.944 -07 000000608 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-18 03:55:12.944 -07 000000608 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.840 mm, average velocity = 2.110 mm/sec
17-03-18 03:55:13.894 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:55:13.894 -07 000000462 INF: FPGA: Recv YRDPOS 144769
17-03-18 03:55:13.904 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:55:13.904 -07 000000608 INF: Y Motor: Encoder = 144769 = motor step 113100.8 = 70.6880 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:55:13.924 -07 000000608 INF: Y Motor: After move to 70.702606, error = -0.014618, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 03:55:13.924 -07 000000608 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 03:55:13.924 -07 000000608 INF: Y Motor: Moved to 70.6880 after 1451 ms (table move)
17-03-18 03:55:13.934 -07 000000502 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135546 mm (DAC = 29610)
17-03-18 03:55:13.934 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:55:13.934 -07 000000591 INF: FPGA: Recv ZSGSRD 30388
17-03-18 03:55:13.944 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 03:55:13.944 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:55:13.944 -07 000000591 INF: FPGA: Recv ZSGSRD 30391
17-03-18 03:55:13.954 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:55:13.954 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:55:13.954 -07 000000591 INF: FPGA: Recv ZSGSRD 30390
17-03-18 03:55:13.964 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:55:13.964 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:55:13.964 -07 000000591 INF: FPGA: Recv ZSGSRD 30393
17-03-18 03:55:13.974 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:55:13.974 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:55:13.974 -07 000000591 INF: FPGA: Recv ZSGSRD 30393
17-03-18 03:55:13.984 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:55:13.984 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:55:13.984 -07 000000447 INF: FPGA: Recv ZSGSRD 30392
17-03-18 03:55:13.994 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:55:13.994 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:55:13.994 -07 000000591 INF: FPGA: Recv ZSGSRD 30388
17-03-18 03:55:14.004 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:55:14.004 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:55:14.004 -07 000000447 INF: FPGA: Recv ZSGSRD 30383
17-03-18 03:55:14.014 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:55:14.014 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:55:14.014 -07 000000608 INF: FPGA: Recv ZSGSRD 30387
17-03-18 03:55:14.024 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:55:14.024 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:55:14.024 -07 000000591 INF: FPGA: Recv ZSGSRD 30393
17-03-18 03:55:14.034 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:55:14.034 -07 000000502 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:55:14.034 -07 000000012 INF: FPGA: Recv ZPIEZORD 26203
17-03-18 03:55:14.044 -07 000000502 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:55:14.044 -07 000000502 INF: Z Motor: Piezo is near 36.0 V (nominally 0 to 100 V), expect near 45.2 V, since DAC is at 4.518 V. Piezo Error = -9.2 V.
17-03-18 03:55:14.044 -07 000000502 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.5 um, Read 10 ADC samples: Avg = 30390 (-134.8 uncal um), Error = 0.8 uncal um, Median = 30390 (-134.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 30383 (-134.7 uncal um), Max = 30393 (-134.8 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 03:55:14.044 -07 000000502 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30390, posNoise = 3, negNoise = 7
17-03-18 03:55:14.044 -07 000000502 INF: Z Motor: After move to -0.135546, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:55:14.044 -07 000000502 INF: Z Motor: Settle wait time = 1454 ms, measure time = 108 ms (allowed 150 ms), total time = 1562 ms
17-03-18 03:55:14.044 -07 000000502 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-18 03:55:14.094 -07 000000502 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1614 ms
17-03-18 03:55:14.094 -07 000000502 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 03:55:14.094 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:55:14.094 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:55:14.094 -07 000000611 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:55:14.094 -07 000000012 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:55:14.094 -07 000000590 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 03:55:14.094 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:55:14.094 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 03:55:14.094 -07 000000590 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 03:55:14.104 -07 000000590 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 03:55:14.104 -07 000000590 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 03:55:14.104 -07 000000590 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 03:55:14.104 -07 000000590 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-18 03:55:14.114 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 03:55:14.154 -07 000000501 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 03:55:14.454 -07 000000447 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 03:55:14.454 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 03:55:14.454 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 03:55:14.464 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 596199184, 0x0, 559484976) start.
17-03-18 03:55:14.494 -07 000000590 INF: FPGA: Recv @CAMSNAP 380
17-03-18 03:55:14.494 -07 000000437 INF: FPGA: Recv CAMSNAP
17-03-18 03:55:14.494 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 384 ms overall
17-03-18 03:55:14.574 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 596199184, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 03:55:14.574 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:55:14.574 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 03:55:14.574 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-18 03:55:14.594 -07 000000502 INF: Autofocus start
17-03-18 03:55:14.594 -07 000000502 INF: MeasureProfile start
17-03-18 03:55:14.604 -07 000000502 INF: MeasureProfile done
17-03-18 03:55:14.604 -07 000000502 INF: X=32  Z correction [um]=0.1299841
17-03-18 03:55:14.604 -07 000000502 INF: Autofocus finished
17-03-18 03:55:14.614 -07 000000625 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 03:55:14.614 -07 000000590 INF: FPGA: Recv FOCMRRCUR 
17-03-18 03:55:14.624 -07 000000625 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-18 03:55:14.644 -07 000000625 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 03:55:14.844 -07 000000502 INF: FPGA: Recv FOCMRRIMG
17-03-18 03:55:14.844 -07 000000625 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 03:55:14.844 -07 000000610 INF: ------------ Scan Snapping tile 14 at Y-position 70.68798828125, Z-position -0.135555158999251. ----------
17-03-18 03:55:14.844 -07 000000610 INF: Cycle	118	Tile	14	Exposure Settings		A	412	G	198	T	198	C	412
17-03-18 03:55:14.844 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28151, sync = True, waitForSettling = True)
17-03-18 03:55:14.844 -07 000000610 INF: Z Motor: Moving to -0.128867 mm, started at -0.135555 mm, distance = 6.69 um
17-03-18 03:55:14.854 -07 000000610 INF: FPGA: Xmit ZDACW 28151\n [Z Motor]
17-03-18 03:55:14.854 -07 000000447 INF: FPGA: Recv ZDACW
17-03-18 03:55:14.864 -07 000000610 INF: FPGA: 'ZDACW 28151' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:55:14.864 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:55:14.864 -07 000000625 INF: FPGA: Recv ZDACR 28151
17-03-18 03:55:14.874 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:55:14.874 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 03:55:15.024 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:55:15.024 -07 000000437 INF: FPGA: Recv ZSGSRD 29345
17-03-18 03:55:15.034 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:55:15.034 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:55:15.034 -07 000000625 INF: FPGA: Recv ZSGSRD 29356
17-03-18 03:55:15.044 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:55:15.054 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:55:15.054 -07 000000502 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 118, FrontChillerTemperature: 3.99219,
17-03-18 03:55:15.054 -07 000000437 INF: FPGA: Recv ZSGSRD 29343
17-03-18 03:55:15.064 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 03:55:15.074 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:55:15.074 -07 000000437 INF: FPGA: Recv ZSGSRD 29350
17-03-18 03:55:15.084 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 03:55:15.084 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:55:15.084 -07 000000625 INF: FPGA: Recv ZSGSRD 29351
17-03-18 03:55:15.094 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:55:15.104 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:55:15.104 -07 000000502 INF: FPGA: Recv ZSGSRD 29346
17-03-18 03:55:15.114 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 03:55:15.114 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:55:15.114 -07 000000437 INF: FPGA: Recv ZSGSRD 29359
17-03-18 03:55:15.124 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:55:15.134 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:55:15.134 -07 000000447 INF: FPGA: Recv ZSGSRD 29346
17-03-18 03:55:15.144 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 03:55:15.144 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:55:15.144 -07 000000625 INF: FPGA: Recv ZSGSRD 29351
17-03-18 03:55:15.154 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:55:15.164 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:55:15.164 -07 000000502 INF: FPGA: Recv ZSGSRD 29350
17-03-18 03:55:15.174 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 03:55:15.174 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:55:15.174 -07 000000625 INF: FPGA: Recv ZPIEZORD 24776
17-03-18 03:55:15.184 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:55:15.184 -07 000000610 INF: Z Motor: Piezo is near 32.9 V (nominally 0 to 100 V), expect near 43.0 V, since DAC is at 4.296 V. Piezo Error = -10.0 V.
17-03-18 03:55:15.184 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.9 um, Read 10 ADC samples: Avg = 29350 (-128.1 uncal um), Error = 0.8 uncal um, Median = 29350 (-128.1 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 29343 (-128.1 uncal um), Max = 29359 (-128.2 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 03:55:15.184 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29350, posNoise = 9, negNoise = 7
17-03-18 03:55:15.184 -07 000000610 INF: Z Motor: After move to -0.128867, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:55:15.184 -07 000000610 INF: Z Motor: MoveAbsStepped took 331 ms)
17-03-18 03:55:15.184 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:55:15.184 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:55:15.184 -07 000000447 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:55:15.184 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:55:15.184 -07 000000437 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 03:55:15.184 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:55:15.184 -07 000000625 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 03:55:15.184 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 03:55:15.184 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 03:55:15.184 -07 000000437 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 03:55:15.184 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 03:55:15.184 -07 000000625 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 03:55:15.194 -07 000000625 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-18 03:55:15.194 -07 000000625 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 03:55:15.194 -07 000000437 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-18 03:55:15.194 -07 000000437 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 03:55:15.204 -07 000000625 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-18 03:55:15.204 -07 000000625 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 03:55:15.204 -07 000000437 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 03:55:15.204 -07 000000437 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 03:55:15.204 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 412 412 198 198 28328 150\n [Camera]
17-03-18 03:55:15.404 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 03:55:15.824 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 604
17-03-18 03:55:15.824 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 604
17-03-18 03:55:15.824 -07 000000585 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:55:15.824 -07 000000585 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:55:15.824 -07 000000585 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-18 03:55:15.824 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 604
17-03-18 03:55:15.824 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 604
17-03-18 03:55:15.824 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:55:15.834 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:55:15.834 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 2334002848, 0x0, 418435064) start.
17-03-18 03:55:16.014 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28328 797
17-03-18 03:55:16.164 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP turning grn on 947
17-03-18 03:55:16.214 -07 000000585 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 386 ms.
17-03-18 03:55:16.214 -07 000000585 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-18 03:55:16.214 -07 000000585 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:55:16.214 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 2334002848, 0x0, 418435064) end. Duration was 380 ms.
17-03-18 03:55:16.214 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-18 03:55:16.214 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:55:16.214 -07 000000585 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 03:55:16.214 -07 000000585 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-18 03:55:16.214 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 03:55:16.224 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-18 03:55:16.364 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1145
17-03-18 03:55:16.364 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1145
17-03-18 03:55:16.364 -07 000000585 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:55:16.364 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1145
17-03-18 03:55:16.364 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1145
17-03-18 03:55:16.364 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:55:16.364 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:55:16.364 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 03:55:16.364 -07 000000585 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:55:16.364 -07 000000585 INF: Camera: sBCa_ReadImage(785074288, 2620985504, 0x0, 391868352) start.
17-03-18 03:55:16.554 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP 1337
17-03-18 03:55:16.554 -07 000000502 INF: FPGA: Recv CAMDBLSNAP
17-03-18 03:55:16.554 -07 000000610 INF: FPGA: 'CAMDBLSNAP 412 412 198 198 28328 150' command took 2 ms to send, 1334 ms to get response, and 1345 ms overall
17-03-18 03:55:16.554 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 03:55:16.554 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 15 at Y-position 70.68798828125, Z-Position -0.128873978371819. ------
17-03-18 03:55:16.564 -07 000000625 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 03:55:16.564 -07 000000512 INF: Y Motor: MoveYZ optimized starting. Moving Y to 71.5326 mm, moving Z to -0.13552 mm
17-03-18 03:55:16.564 -07 000000512 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 03:55:16.564 -07 000000502 INF: Y Motor: Entering MoveAbsStepped (target = 114452 steps, sync = True, waitForSettling = True)
17-03-18 03:55:16.564 -07 000000502 INF: Y Motor: Moving to 71.5326 mm, started at 70.6880 mm, delta = 0.8446 mm
17-03-18 03:55:16.564 -07 000000467 INF: Z Motor: Entering MoveAbsStepped (DAC = 29605, sync = True, waitForSettling = False)
17-03-18 03:55:16.564 -07 000000467 INF: Z Motor: Moving to -0.135523 mm, started at -0.128874 mm, distance = -6.65 um
17-03-18 03:55:16.564 -07 000000437 INF: FPGA: Recv FOCMRRCUR 
17-03-18 03:55:16.574 -07 000000625 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:55:16.574 -07 000000467 INF: FPGA: Xmit ZDACW 29605\n [Z Motor]
17-03-18 03:55:16.574 -07 000000618 INF: FPGA: Recv ZDACW
17-03-18 03:55:16.584 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:55:16.584 -07 000000467 INF: FPGA: 'ZDACW 29605' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-18 03:55:16.584 -07 000000462 INF: FPGA: Recv YRDPOS 144770
17-03-18 03:55:16.594 -07 000000625 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 03:55:16.594 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-18 03:55:16.594 -07 000000502 INF: Y Motor: Encoder = 144770 = motor step 113101.6 = 70.6885 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:55:16.594 -07 000000502 INF: Y Motor: Last commanded position = 70.7026 mm (113124.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 03:55:16.594 -07 000000502 INF: Y Motor: Moving 1351 steps-30
17-03-18 03:55:16.604 -07 000000467 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:55:16.604 -07 000000591 INF: FPGA: Recv ZDACR 29605
17-03-18 03:55:16.614 -07 000000502 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 03:55:16.614 -07 000000467 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 03:55:16.614 -07 000000467 INF: Z Motor: MoveAbsStepped took 46 ms (did NOT wait for settling yet))
17-03-18 03:55:16.614 -07 000000467 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 03:55:16.624 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 117. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1690, R2=1759, Total=3449. Warn if over 250 bubbles per interval.
17-03-18 03:55:16.764 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 397 ms.
17-03-18 03:55:16.764 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-18 03:55:16.764 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:55:16.764 -07 000000585 INF: Camera: sBCa_ReadImage(785074288, 2620985504, 0x0, 391868352) end. Duration was 395 ms.
17-03-18 03:55:16.764 -07 000000585 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 03:55:16.764 -07 000000585 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:55:16.764 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 03:55:16.764 -07 000000585 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 03:55:16.764 -07 000000585 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-18 03:55:16.774 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-18 03:55:16.794 -07 000000591 INF: FPGA: Recv FOCMRRFOC
17-03-18 03:55:16.794 -07 000000625 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 03:55:16.984 -07 000000462 INF: FPGA: Recv YMVTILE
17-03-18 03:55:16.984 -07 000000502 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 391 ms overall
17-03-18 03:55:17.034 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:55:17.044 -07 000000447 INF: FPGA: Recv YRDPOS 146469
17-03-18 03:55:17.044 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 03:55:17.044 -07 000000502 INF: Y Motor: Encoder = 146469 = motor step 114428.9 = 71.5181 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:55:17.044 -07 000000502 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-18 03:55:17.044 -07 000000502 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 391 ms, distance = 0.845 mm, average velocity = 2.160 mm/sec
17-03-18 03:55:17.994 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:55:17.994 -07 000000437 INF: FPGA: Recv YRDPOS 146470
17-03-18 03:55:18.004 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:55:18.004 -07 000000502 INF: Y Motor: Encoder = 146470 = motor step 114429.7 = 71.5186 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:55:18.024 -07 000000502 INF: Y Motor: After move to 71.532608, error = -0.014053, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 03:55:18.024 -07 000000502 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 03:55:18.024 -07 000000502 INF: Y Motor: Moved to 71.5186 after 1466 ms (table move)
17-03-18 03:55:18.034 -07 000000512 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135523 mm (DAC = 29605)
17-03-18 03:55:18.034 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:55:18.034 -07 000000467 INF: FPGA: Recv ZSGSRD 30392
17-03-18 03:55:18.044 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 03:55:18.044 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:55:18.044 -07 000000467 INF: FPGA: Recv ZSGSRD 30384
17-03-18 03:55:18.054 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:55:18.054 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:55:18.054 -07 000000590 INF: FPGA: Recv ZSGSRD 30386
17-03-18 03:55:18.064 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:55:18.064 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:55:18.064 -07 000000590 INF: FPGA: Recv ZSGSRD 30395
17-03-18 03:55:18.074 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:55:18.074 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:55:18.074 -07 000000590 INF: FPGA: Recv ZSGSRD 30392
17-03-18 03:55:18.084 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:55:18.084 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:55:18.084 -07 000000467 INF: FPGA: Recv ZSGSRD 30384
17-03-18 03:55:18.094 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:55:18.094 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:55:18.094 -07 000000467 INF: FPGA: Recv ZSGSRD 30385
17-03-18 03:55:18.104 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:55:18.104 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:55:18.104 -07 000000590 INF: FPGA: Recv ZSGSRD 30380
17-03-18 03:55:18.114 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:55:18.114 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:55:18.114 -07 000000474 INF: FPGA: Recv ZSGSRD 30383
17-03-18 03:55:18.124 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:55:18.124 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:55:18.124 -07 000000474 INF: FPGA: Recv ZSGSRD 30384
17-03-18 03:55:18.134 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:55:18.134 -07 000000512 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:55:18.134 -07 000000591 INF: FPGA: Recv ZPIEZORD 26181
17-03-18 03:55:18.144 -07 000000512 INF: FPGA: 'ZPIEZORD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:55:18.144 -07 000000512 INF: Z Motor: Piezo is near 35.9 V (nominally 0 to 100 V), expect near 45.2 V, since DAC is at 4.517 V. Piezo Error = -9.2 V.
17-03-18 03:55:18.144 -07 000000512 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.5 um, Read 10 ADC samples: Avg = 30386 (-134.7 uncal um), Error = 0.8 uncal um, Median = 30384 (-134.7 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 30380 (-134.7 uncal um), Max = 30395 (-134.8 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 03:55:18.144 -07 000000512 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30386, posNoise = 9, negNoise = 6
17-03-18 03:55:18.144 -07 000000512 INF: Z Motor: After move to -0.135523, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:55:18.144 -07 000000512 INF: Z Motor: Settle wait time = 1468 ms, measure time = 108 ms (allowed 150 ms), total time = 1576 ms
17-03-18 03:55:18.144 -07 000000512 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-18 03:55:18.194 -07 000000512 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1629 ms
17-03-18 03:55:18.194 -07 000000512 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 03:55:18.194 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:55:18.194 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:55:18.194 -07 000000590 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:55:18.194 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:55:18.194 -07 000000625 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 03:55:18.194 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:55:18.194 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 03:55:18.194 -07 000000625 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 03:55:18.204 -07 000000625 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 03:55:18.204 -07 000000625 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 03:55:18.214 -07 000000625 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 03:55:18.214 -07 000000625 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-18 03:55:18.214 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 03:55:18.264 -07 000000467 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 03:55:18.564 -07 000000502 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 03:55:18.564 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 03:55:18.564 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 03:55:18.564 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 618216056, 0x0, 559484976) start.
17-03-18 03:55:18.604 -07 000000447 INF: FPGA: Recv @CAMSNAP 380
17-03-18 03:55:18.604 -07 000000618 INF: FPGA: Recv CAMSNAP
17-03-18 03:55:18.604 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 383 ms to get response, and 384 ms overall
17-03-18 03:55:18.694 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 618216056, 0x0, 559484976) end. Duration was 125 ms.
17-03-18 03:55:18.694 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:55:18.694 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 03:55:18.694 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms.
17-03-18 03:55:18.704 -07 000000512 INF: Autofocus start
17-03-18 03:55:18.704 -07 000000512 INF: MeasureProfile start
17-03-18 03:55:18.704 -07 000000474 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 03:55:18.704 -07 000000467 INF: FPGA: Recv FOCMRRCUR 
17-03-18 03:55:18.714 -07 000000474 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 03:55:18.714 -07 000000474 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 03:55:18.714 -07 000000512 INF: MeasureProfile done
17-03-18 03:55:18.714 -07 000000512 INF: X=-16  Z correction [um]=-0.08128808
17-03-18 03:55:18.714 -07 000000512 INF: Autofocus finished
17-03-18 03:55:18.914 -07 000000437 INF: FPGA: Recv FOCMRRIMG
17-03-18 03:55:18.914 -07 000000474 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 03:55:18.914 -07 000000610 INF: ------------ Scan Snapping tile 15 at Y-position 71.5185546875, Z-position -0.135529462150683. ----------
17-03-18 03:55:18.914 -07 000000610 INF: Cycle	118	Tile	15	Exposure Settings		A	412	G	198	T	198	C	412
17-03-18 03:55:18.924 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28100, sync = True, waitForSettling = True)
17-03-18 03:55:18.924 -07 000000610 INF: Z Motor: Moving to -0.128634 mm, started at -0.135529 mm, distance = 6.90 um
17-03-18 03:55:18.924 -07 000000610 INF: FPGA: Xmit ZDACW 28100\n [Z Motor]
17-03-18 03:55:18.924 -07 000000585 INF: FPGA: Recv ZDACW
17-03-18 03:55:18.934 -07 000000610 INF: FPGA: 'ZDACW 28100' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:55:18.934 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:55:18.934 -07 000000585 INF: FPGA: Recv ZDACR 28100
17-03-18 03:55:18.944 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:55:18.944 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 03:55:19.094 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:55:19.094 -07 000000585 INF: FPGA: Recv ZSGSRD 29312
17-03-18 03:55:19.104 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:55:19.104 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:55:19.104 -07 000000447 INF: FPGA: Recv ZSGSRD 29320
17-03-18 03:55:19.114 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:55:19.114 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:55:19.114 -07 000000502 INF: FPGA: Recv ZSGSRD 29317
17-03-18 03:55:19.124 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:55:19.124 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:55:19.124 -07 000000590 INF: FPGA: Recv ZSGSRD 29314
17-03-18 03:55:19.134 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:55:19.134 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:55:19.134 -07 000000447 INF: FPGA: Recv ZSGSRD 29313
17-03-18 03:55:19.144 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:55:19.144 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:55:19.144 -07 000000590 INF: FPGA: Recv ZSGSRD 29312
17-03-18 03:55:19.154 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:55:19.154 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:55:19.154 -07 000000447 INF: FPGA: Recv ZSGSRD 29313
17-03-18 03:55:19.164 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:55:19.164 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:55:19.164 -07 000000502 INF: FPGA: Recv ZSGSRD 29314
17-03-18 03:55:19.174 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:55:19.174 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:55:19.174 -07 000000447 INF: FPGA: Recv ZSGSRD 29312
17-03-18 03:55:19.184 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:55:19.184 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:55:19.184 -07 000000447 INF: FPGA: Recv ZSGSRD 29313
17-03-18 03:55:19.194 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:55:19.194 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:55:19.194 -07 000000585 INF: FPGA: Recv ZPIEZORD 24752
17-03-18 03:55:19.204 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:55:19.204 -07 000000610 INF: Z Motor: Piezo is near 32.9 V (nominally 0 to 100 V), expect near 42.9 V, since DAC is at 4.288 V. Piezo Error = -10.0 V.
17-03-18 03:55:19.204 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.6 um, Read 10 ADC samples: Avg = 29314 (-127.9 uncal um), Error = 0.8 uncal um, Median = 29313 (-127.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 29312 (-127.9 uncal um), Max = 29320 (-127.9 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 2 (0.0 uncal um)
17-03-18 03:55:19.204 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29314, posNoise = 6, negNoise = 2
17-03-18 03:55:19.204 -07 000000610 INF: Z Motor: After move to -0.128634, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:55:19.204 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 03:55:19.204 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:55:19.204 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:55:19.204 -07 000000590 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:55:19.204 -07 000000585 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:55:19.204 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 03:55:19.204 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:55:19.204 -07 000000447 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 03:55:19.204 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 03:55:19.204 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 03:55:19.204 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 03:55:19.204 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 03:55:19.204 -07 000000447 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 03:55:19.204 -07 000000447 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 03:55:19.204 -07 000000447 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 03:55:19.204 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 03:55:19.204 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 03:55:19.214 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 03:55:19.214 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 03:55:19.214 -07 000000447 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-18 03:55:19.224 -07 000000447 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 03:55:19.224 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 412 412 198 198 28277 150\n [Camera]
17-03-18 03:55:19.424 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 03:55:19.834 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 604
17-03-18 03:55:19.834 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 604
17-03-18 03:55:19.834 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:55:19.834 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:55:19.834 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 2162365984, 0x0, 391868352) start.
17-03-18 03:55:19.834 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 604
17-03-18 03:55:19.834 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 604
17-03-18 03:55:19.844 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:55:19.844 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:55:19.844 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 2197788248, 0x0, 418435064) start.
17-03-18 03:55:20.024 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28277 799
17-03-18 03:55:20.174 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP turning grn on 947
17-03-18 03:55:20.214 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 2162365984, 0x0, 391868352) end. Duration was 382 ms.
17-03-18 03:55:20.214 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-18 03:55:20.214 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:55:20.224 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 03:55:20.224 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-18 03:55:20.224 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 2197788248, 0x0, 418435064) end. Duration was 382 ms.
17-03-18 03:55:20.224 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-18 03:55:20.224 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:55:20.224 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 03:55:20.234 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-18 03:55:20.374 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1145
17-03-18 03:55:20.374 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1145
17-03-18 03:55:20.374 -07 000000611 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:55:20.374 -07 000000611 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:55:20.374 -07 000000611 INF: Camera: sBCa_ReadImage(785074288, 2233210512, 0x0, 391868352) start.
17-03-18 03:55:20.374 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1145
17-03-18 03:55:20.374 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1145
17-03-18 03:55:20.374 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:55:20.384 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:55:20.384 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 03:55:20.484 -07 000000012 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 118, FrontChillerTemperature: 4.02213,
17-03-18 03:55:20.564 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP 1337
17-03-18 03:55:20.564 -07 000000012 INF: FPGA: Recv CAMDBLSNAP
17-03-18 03:55:20.564 -07 000000610 INF: FPGA: 'CAMDBLSNAP 412 412 198 198 28277 150' command took 2 ms to send, 1337 ms to get response, and 1345 ms overall
17-03-18 03:55:20.564 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 03:55:20.564 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 16 at Y-position 71.5185546875, Z-Position -0.128642706734716. ------
17-03-18 03:55:20.574 -07 000000447 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 03:55:20.574 -07 000000501 INF: Y Motor: MoveYZ optimized starting. Moving Y to 72.3626 mm, moving Z to -0.13503 mm
17-03-18 03:55:20.574 -07 000000501 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 03:55:20.574 -07 000000012 INF: Y Motor: Entering MoveAbsStepped (target = 115780 steps, sync = True, waitForSettling = True)
17-03-18 03:55:20.574 -07 000000012 INF: Y Motor: Moving to 72.3626 mm, started at 71.5186 mm, delta = 0.8441 mm
17-03-18 03:55:20.574 -07 000000585 INF: FPGA: Recv FOCMRRCUR 
17-03-18 03:55:20.574 -07 000000590 INF: Z Motor: Entering MoveAbsStepped (DAC = 29497, sync = True, waitForSettling = False)
17-03-18 03:55:20.574 -07 000000590 INF: Z Motor: Moving to -0.135029 mm, started at -0.128643 mm, distance = -6.39 um
17-03-18 03:55:20.584 -07 000000447 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 03:55:20.584 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:55:20.584 -07 000000462 INF: FPGA: Recv YRDPOS 146470
17-03-18 03:55:20.594 -07 000000590 INF: FPGA: Xmit ZDACW 29497\n [Z Motor]
17-03-18 03:55:20.594 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-18 03:55:20.594 -07 000000012 INF: Y Motor: Encoder = 146470 = motor step 114429.7 = 71.5186 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:55:20.594 -07 000000012 INF: Y Motor: Last commanded position = 71.5326 mm (114452.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 03:55:20.594 -07 000000012 INF: Y Motor: Moving 1350 steps-30
17-03-18 03:55:20.594 -07 000000585 INF: FPGA: Recv ZDACW
17-03-18 03:55:20.604 -07 000000447 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 03:55:20.604 -07 000000590 INF: FPGA: 'ZDACW 29497' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-18 03:55:20.614 -07 000000012 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 03:55:20.624 -07 000000590 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:55:20.624 -07 000000467 INF: FPGA: Recv ZDACR 29497
17-03-18 03:55:20.634 -07 000000590 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 03:55:20.634 -07 000000590 INF: Z Motor: MoveAbsStepped took 53 ms (did NOT wait for settling yet))
17-03-18 03:55:20.764 -07 000000611 INF: Camera: sBCa_ReadImage(785074288, 2233210512, 0x0, 391868352) end. Duration was 383 ms.
17-03-18 03:55:20.764 -07 000000611 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-18 03:55:20.764 -07 000000611 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:55:20.764 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 382 ms.
17-03-18 03:55:20.764 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 383 ms.
17-03-18 03:55:20.764 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:55:20.764 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:55:20.764 -07 000000611 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 03:55:20.764 -07 000000611 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-18 03:55:20.774 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 03:55:20.804 -07 000000618 INF: FPGA: Recv FOCMRRFOC
17-03-18 03:55:20.804 -07 000000447 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 222 ms overall
17-03-18 03:55:20.984 -07 000000512 INF: FPGA: Recv YMVTILE
17-03-18 03:55:20.984 -07 000000012 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 395 ms overall
17-03-18 03:55:21.034 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:55:21.044 -07 000000608 INF: FPGA: Recv YRDPOS 148171
17-03-18 03:55:21.044 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 5 ms overall
17-03-18 03:55:21.044 -07 000000012 INF: Y Motor: Encoder = 148171 = motor step 115758.6 = 72.3491 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:55:21.044 -07 000000012 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-18 03:55:21.044 -07 000000012 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.844 mm, average velocity = 2.126 mm/sec
17-03-18 03:55:21.624 -07 000000474 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 03:55:21.624 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 117. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1690, R2=1759, Total=3449. Warn if over 250 bubbles per interval.
17-03-18 03:55:21.994 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:55:21.994 -07 000000512 INF: FPGA: Recv YRDPOS 148171
17-03-18 03:55:22.004 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:55:22.004 -07 000000012 INF: Y Motor: Encoder = 148171 = motor step 115758.6 = 72.3491 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:55:22.034 -07 000000012 INF: Y Motor: After move to 72.362610, error = -0.013489, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 03:55:22.034 -07 000000012 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 03:55:22.034 -07 000000012 INF: Y Motor: Moved to 72.3491 after 1455 ms (table move)
17-03-18 03:55:22.034 -07 000000501 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135029 mm (DAC = 29497)
17-03-18 03:55:22.034 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:55:22.034 -07 000000474 INF: FPGA: Recv ZSGSRD 30312
17-03-18 03:55:22.044 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 03:55:22.044 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:55:22.044 -07 000000437 INF: FPGA: Recv ZSGSRD 30308
17-03-18 03:55:22.054 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:55:22.054 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:55:22.054 -07 000000590 INF: FPGA: Recv ZSGSRD 30310
17-03-18 03:55:22.064 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:55:22.064 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:55:22.064 -07 000000585 INF: FPGA: Recv ZSGSRD 30312
17-03-18 03:55:22.074 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:55:22.074 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:55:22.074 -07 000000608 INF: FPGA: Recv ZSGSRD 30310
17-03-18 03:55:22.084 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:55:22.084 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:55:22.084 -07 000000502 INF: FPGA: Recv ZSGSRD 30308
17-03-18 03:55:22.094 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:55:22.094 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:55:22.094 -07 000000590 INF: FPGA: Recv ZSGSRD 30309
17-03-18 03:55:22.104 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:55:22.104 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:55:22.104 -07 000000467 INF: FPGA: Recv ZSGSRD 30308
17-03-18 03:55:22.114 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:55:22.114 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:55:22.114 -07 000000608 INF: FPGA: Recv ZSGSRD 30308
17-03-18 03:55:22.124 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:55:22.124 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:55:22.124 -07 000000447 INF: FPGA: Recv ZSGSRD 30310
17-03-18 03:55:22.134 -07 000000501 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:55:22.134 -07 000000501 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:55:22.134 -07 000000462 INF: FPGA: Recv ZPIEZORD 26068
17-03-18 03:55:22.144 -07 000000501 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:55:22.144 -07 000000501 INF: Z Motor: Piezo is near 35.7 V (nominally 0 to 100 V), expect near 45.0 V, since DAC is at 4.501 V. Piezo Error = -9.3 V.
17-03-18 03:55:22.144 -07 000000501 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.0 um, Read 10 ADC samples: Avg = 30310 (-134.3 uncal um), Error = 0.8 uncal um, Median = 30310 (-134.3 uncal um), StdDev = 2 (0.0 uncal um), Range = 4 (0.0 uncal um), Min = 30308 (-134.2 uncal um), Max = 30312 (-134.3 uncal um), Pos Noise = 2 (0.0 uncal um), Neg Noise = 2 (0.0 uncal um)
17-03-18 03:55:22.144 -07 000000501 INF: Z Motor: ADC noise = 2, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30310, posNoise = 2, negNoise = 2
17-03-18 03:55:22.144 -07 000000501 INF: Z Motor: After move to -0.135029, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:55:22.144 -07 000000501 INF: Z Motor: Settle wait time = 1457 ms, measure time = 106 ms (allowed 150 ms), total time = 1563 ms
17-03-18 03:55:22.144 -07 000000501 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-18 03:55:22.194 -07 000000501 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1616 ms
17-03-18 03:55:22.194 -07 000000501 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 03:55:22.194 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:55:22.194 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:55:22.194 -07 000000447 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:55:22.194 -07 000000467 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 03:55:22.194 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:55:22.194 -07 000000012 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:55:22.194 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 03:55:22.194 -07 000000467 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 03:55:22.204 -07 000000467 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 03:55:22.204 -07 000000467 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 03:55:22.204 -07 000000467 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 03:55:22.204 -07 000000467 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-18 03:55:22.214 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 03:55:22.254 -07 000000590 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 03:55:22.554 -07 000000512 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 03:55:22.554 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 03:55:22.554 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 03:55:22.554 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2268632776, 0x0, 559484976) start.
17-03-18 03:55:22.594 -07 000000501 INF: FPGA: Recv @CAMSNAP 380
17-03-18 03:55:22.594 -07 000000447 INF: FPGA: Recv CAMSNAP
17-03-18 03:55:22.594 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 385 ms overall
17-03-18 03:55:22.674 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2268632776, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 03:55:22.674 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:55:22.674 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 03:55:22.674 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 116 ms.
17-03-18 03:55:22.694 -07 000000012 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 03:55:22.694 -07 000000512 INF: Autofocus start
17-03-18 03:55:22.694 -07 000000512 INF: MeasureProfile start
17-03-18 03:55:22.694 -07 000000585 INF: FPGA: Recv FOCMRRCUR 
17-03-18 03:55:22.704 -07 000000012 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 03:55:22.704 -07 000000012 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 03:55:22.714 -07 000000512 INF: MeasureProfile done
17-03-18 03:55:22.714 -07 000000512 INF: X=0  Z correction [um]=-0.02394831
17-03-18 03:55:22.714 -07 000000512 INF: Autofocus finished
17-03-18 03:55:22.904 -07 000000512 INF: FPGA: Recv FOCMRRIMG
17-03-18 03:55:22.904 -07 000000012 INF: FPGA: 'FOCMRRIMG' command took 1 ms to send, 194 ms to get response, and 204 ms overall
17-03-18 03:55:22.914 -07 000000610 INF: ------------ Scan Snapping tile 16 at Y-position 72.34912109375, Z-position -0.13504122202791. ----------
17-03-18 03:55:22.914 -07 000000610 INF: Cycle	118	Tile	16	Exposure Settings		A	412	G	198	T	198	C	412
17-03-18 03:55:22.914 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28004, sync = True, waitForSettling = True)
17-03-18 03:55:22.914 -07 000000610 INF: Z Motor: Moving to -0.128194 mm, started at -0.135041 mm, distance = 6.85 um
17-03-18 03:55:22.914 -07 000000610 INF: FPGA: Xmit ZDACW 28004\n [Z Motor]
17-03-18 03:55:22.914 -07 000000611 INF: FPGA: Recv ZDACW
17-03-18 03:55:22.924 -07 000000610 INF: FPGA: 'ZDACW 28004' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 03:55:22.924 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:55:22.924 -07 000000012 INF: FPGA: Recv ZDACR 28004
17-03-18 03:55:22.934 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 03:55:22.934 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 03:55:23.084 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:55:23.084 -07 000000611 INF: FPGA: Recv ZSGSRD 29251
17-03-18 03:55:23.094 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:55:23.094 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:55:23.094 -07 000000512 INF: FPGA: Recv ZSGSRD 29242
17-03-18 03:55:23.104 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:55:23.104 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:55:23.104 -07 000000590 INF: FPGA: Recv ZSGSRD 29245
17-03-18 03:55:23.114 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:55:23.114 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:55:23.114 -07 000000611 INF: FPGA: Recv ZSGSRD 29243
17-03-18 03:55:23.124 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:55:23.124 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:55:23.124 -07 000000611 INF: FPGA: Recv ZSGSRD 29247
17-03-18 03:55:23.134 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:55:23.134 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:55:23.134 -07 000000512 INF: FPGA: Recv ZSGSRD 29247
17-03-18 03:55:23.144 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:55:23.144 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:55:23.144 -07 000000512 INF: FPGA: Recv ZSGSRD 29245
17-03-18 03:55:23.154 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:55:23.154 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:55:23.154 -07 000000012 INF: FPGA: Recv ZSGSRD 29243
17-03-18 03:55:23.164 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:55:23.164 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:55:23.164 -07 000000590 INF: FPGA: Recv ZSGSRD 29244
17-03-18 03:55:23.174 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:55:23.174 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:55:23.174 -07 000000590 INF: FPGA: Recv ZSGSRD 29247
17-03-18 03:55:23.184 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:55:23.184 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:55:23.184 -07 000000590 INF: FPGA: Recv ZPIEZORD 24661
17-03-18 03:55:23.194 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:55:23.194 -07 000000610 INF: Z Motor: Piezo is near 32.7 V (nominally 0 to 100 V), expect near 42.7 V, since DAC is at 4.273 V. Piezo Error = -10.0 V.
17-03-18 03:55:23.194 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.2 um, Read 10 ADC samples: Avg = 29245 (-127.4 uncal um), Error = 0.8 uncal um, Median = 29245 (-127.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29242 (-127.4 uncal um), Max = 29251 (-127.5 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 03:55:23.194 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29245, posNoise = 6, negNoise = 3
17-03-18 03:55:23.194 -07 000000610 INF: Z Motor: After move to -0.128194, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:55:23.194 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-18 03:55:23.194 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:55:23.194 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:55:23.194 -07 000000611 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:55:23.194 -07 000000590 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 03:55:23.194 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:55:23.194 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:55:23.194 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 03:55:23.194 -07 000000611 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 03:55:23.194 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 03:55:23.194 -07 000000590 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 03:55:23.194 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 03:55:23.194 -07 000000611 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 03:55:23.194 -07 000000590 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 03:55:23.204 -07 000000590 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 03:55:23.204 -07 000000611 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 03:55:23.204 -07 000000611 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 03:55:23.204 -07 000000590 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 03:55:23.204 -07 000000590 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 03:55:23.214 -07 000000611 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 03:55:23.214 -07 000000611 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 03:55:23.214 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 412 412 198 198 28181 150\n [Camera]
17-03-18 03:55:23.414 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 03:55:23.824 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 604
17-03-18 03:55:23.824 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 604
17-03-18 03:55:23.824 -07 000000611 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:55:23.824 -07 000000611 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:55:23.824 -07 000000611 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) start.
17-03-18 03:55:23.834 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 604
17-03-18 03:55:23.834 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 604
17-03-18 03:55:23.834 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:55:23.834 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:55:23.834 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) start.
17-03-18 03:55:24.014 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28181 797
17-03-18 03:55:24.164 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning grn on 947
17-03-18 03:55:24.224 -07 000000611 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) end. Duration was 396 ms.
17-03-18 03:55:24.224 -07 000000611 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 03:55:24.224 -07 000000611 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:55:24.224 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) end. Duration was 395 ms.
17-03-18 03:55:24.224 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 03:55:24.224 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:55:24.224 -07 000000611 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:55:24.224 -07 000000611 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 03:55:24.234 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:55:24.234 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 406 ms.
17-03-18 03:55:24.364 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1145
17-03-18 03:55:24.364 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1145
17-03-18 03:55:24.364 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:55:24.364 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:55:24.364 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 03:55:24.364 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1145
17-03-18 03:55:24.364 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1145
17-03-18 03:55:24.364 -07 000000474 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:55:24.364 -07 000000474 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:55:24.364 -07 000000474 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-18 03:55:24.554 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP 1337
17-03-18 03:55:24.554 -07 000000611 INF: FPGA: Recv CAMDBLSNAP
17-03-18 03:55:24.554 -07 000000610 INF: FPGA: 'CAMDBLSNAP 412 412 198 198 28181 150' command took 2 ms to send, 1337 ms to get response, and 1345 ms overall
17-03-18 03:55:24.564 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 03:55:24.564 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 17 at Y-position 72.34912109375, Z-Position -0.128199436096934. ------
17-03-18 03:55:24.564 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 03:55:24.564 -07 000000501 INF: Y Motor: MoveYZ optimized starting. Moving Y to 73.1926 mm, moving Z to -0.13474 mm
17-03-18 03:55:24.564 -07 000000501 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 03:55:24.564 -07 000000462 INF: FPGA: Recv FOCMRRCUR 
17-03-18 03:55:24.564 -07 000000447 INF: Y Motor: Entering MoveAbsStepped (target = 117108 steps, sync = True, waitForSettling = True)
17-03-18 03:55:24.564 -07 000000447 INF: Y Motor: Moving to 73.1926 mm, started at 72.3491 mm, delta = 0.8435 mm
17-03-18 03:55:24.564 -07 000000611 INF: Z Motor: Entering MoveAbsStepped (DAC = 29433, sync = True, waitForSettling = False)
17-03-18 03:55:24.564 -07 000000611 INF: Z Motor: Moving to -0.134736 mm, started at -0.128199 mm, distance = -6.54 um
17-03-18 03:55:24.574 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 03:55:24.574 -07 000000611 INF: FPGA: Xmit ZDACW 29433\n [Z Motor]
17-03-18 03:55:24.574 -07 000000591 INF: FPGA: Recv ZDACW
17-03-18 03:55:24.584 -07 000000447 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:55:24.584 -07 000000611 INF: FPGA: 'ZDACW 29433' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-18 03:55:24.584 -07 000000585 INF: FPGA: Recv YRDPOS 148171
17-03-18 03:55:24.594 -07 000000447 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-18 03:55:24.594 -07 000000447 INF: Y Motor: Encoder = 148171 = motor step 115758.6 = 72.3491 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:55:24.594 -07 000000447 INF: Y Motor: Last commanded position = 72.3626 mm (115780.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 03:55:24.594 -07 000000447 INF: Y Motor: Moving 1350 steps-28
17-03-18 03:55:24.594 -07 000000512 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 03:55:24.604 -07 000000611 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:55:24.604 -07 000000502 INF: FPGA: Recv ZDACR 29433
17-03-18 03:55:24.614 -07 000000611 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 03:55:24.614 -07 000000447 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 03:55:24.614 -07 000000611 INF: Z Motor: MoveAbsStepped took 42 ms (did NOT wait for settling yet))
17-03-18 03:55:24.754 -07 000000474 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 384 ms.
17-03-18 03:55:24.754 -07 000000474 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-18 03:55:24.754 -07 000000474 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:55:24.754 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:55:24.754 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 391 ms.
17-03-18 03:55:24.754 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-18 03:55:24.754 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:55:24.764 -07 000000474 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-18 03:55:24.764 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 03:55:24.764 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 03:55:24.794 -07 000000618 INF: FPGA: Recv FOCMRRFOC
17-03-18 03:55:24.794 -07 000000512 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 193 ms to get response, and 223 ms overall
17-03-18 03:55:24.984 -07 000000585 INF: FPGA: Recv YMVTILE
17-03-18 03:55:24.984 -07 000000447 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 03:55:25.034 -07 000000447 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:55:25.044 -07 000000585 INF: FPGA: Recv YRDPOS 149863
17-03-18 03:55:25.044 -07 000000447 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 4 ms overall
17-03-18 03:55:25.044 -07 000000447 INF: Y Motor: Encoder = 149863 = motor step 117080.5 = 73.1753 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:55:25.044 -07 000000447 INF: Y Motor: Position error before settling (table move) = -35 encoder counts (-0.017 mm)
17-03-18 03:55:25.044 -07 000000447 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.843 mm, average velocity = 2.119 mm/sec
17-03-18 03:55:25.844 -07 000000462 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 118, FrontChillerTemperature: 4.000345,
17-03-18 03:55:25.994 -07 000000447 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:55:25.994 -07 000000512 INF: FPGA: Recv YRDPOS 149864
17-03-18 03:55:26.004 -07 000000447 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:55:26.004 -07 000000447 INF: Y Motor: Encoder = 149864 = motor step 117081.3 = 73.1758 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:55:26.034 -07 000000447 INF: Y Motor: After move to 73.192604, error = -0.016823, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 03:55:26.034 -07 000000447 INF: Y Motor: Position error after settling (table move) = -34 encoder counts (-0.017 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 03:55:26.034 -07 000000447 INF: Y Motor: Moved to 73.1758 after 1468 ms (table move)
17-03-18 03:55:26.034 -07 000000501 INF: Z Motor: EndOfMoveAbsStepped: target = -0.134736 mm (DAC = 29433)
17-03-18 03:55:26.034 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:55:26.044 -07 000000512 INF: FPGA: Recv ZSGSRD 30263
17-03-18 03:55:26.054 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:55:26.054 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:55:26.054 -07 000000625 INF: FPGA: Recv ZSGSRD 30263
17-03-18 03:55:26.064 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:55:26.064 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:55:26.064 -07 000000512 INF: FPGA: Recv ZSGSRD 30263
17-03-18 03:55:26.074 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:55:26.074 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:55:26.074 -07 000000502 INF: FPGA: Recv ZSGSRD 30263
17-03-18 03:55:26.084 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:55:26.084 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:55:26.084 -07 000000474 INF: FPGA: Recv ZSGSRD 30268
17-03-18 03:55:26.094 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:55:26.094 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:55:26.094 -07 000000590 INF: FPGA: Recv ZSGSRD 30257
17-03-18 03:55:26.104 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:55:26.104 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:55:26.104 -07 000000512 INF: FPGA: Recv ZSGSRD 30259
17-03-18 03:55:26.114 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:55:26.114 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:55:26.114 -07 000000618 INF: FPGA: Recv ZSGSRD 30258
17-03-18 03:55:26.124 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:55:26.124 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:55:26.124 -07 000000467 INF: FPGA: Recv ZSGSRD 30262
17-03-18 03:55:26.134 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:55:26.134 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:55:26.134 -07 000000585 INF: FPGA: Recv ZSGSRD 30263
17-03-18 03:55:26.144 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 03:55:26.144 -07 000000501 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:55:26.144 -07 000000590 INF: FPGA: Recv ZPIEZORD 26031
17-03-18 03:55:26.154 -07 000000501 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:55:26.154 -07 000000501 INF: Z Motor: Piezo is near 35.6 V (nominally 0 to 100 V), expect near 44.9 V, since DAC is at 4.491 V. Piezo Error = -9.3 V.
17-03-18 03:55:26.154 -07 000000501 INF: Z Motor: ReadAdcAverage: Commanded Z = -134.7 um, Read 10 ADC samples: Avg = 30262 (-133.9 uncal um), Error = 0.8 uncal um, Median = 30263 (-133.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 30257 (-133.9 uncal um), Max = 30268 (-134.0 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 03:55:26.154 -07 000000501 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30262, posNoise = 6, negNoise = 5
17-03-18 03:55:26.154 -07 000000501 INF: Z Motor: After move to -0.134736, error = 0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:55:26.154 -07 000000501 INF: Z Motor: Settle wait time = 1471 ms, measure time = 111 ms (allowed 150 ms), total time = 1582 ms
17-03-18 03:55:26.154 -07 000000501 INF: Z Motor: Waiting extra 39 ms after reading position to reach expected total of 150 ms
17-03-18 03:55:26.194 -07 000000501 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1626 ms
17-03-18 03:55:26.194 -07 000000501 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 03:55:26.194 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:55:26.194 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:55:26.194 -07 000000591 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:55:26.194 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 03:55:26.194 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:55:26.194 -07 000000474 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:55:26.194 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 03:55:26.194 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 03:55:26.194 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 03:55:26.194 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 03:55:26.204 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 03:55:26.204 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-18 03:55:26.214 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 03:55:26.254 -07 000000447 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 03:55:26.554 -07 000000467 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 03:55:26.554 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 03:55:26.554 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 03:55:26.554 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2673282832, 0x0, 559484976) start.
17-03-18 03:55:26.594 -07 000000467 INF: FPGA: Recv @CAMSNAP 380
17-03-18 03:55:26.594 -07 000000467 INF: FPGA: Recv CAMSNAP
17-03-18 03:55:26.594 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 03:55:26.624 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 03:55:26.674 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2673282832, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 03:55:26.674 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:55:26.674 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 03:55:26.674 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 03:55:26.674 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 117. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1690, R2=1759, Total=3449. Warn if over 250 bubbles per interval.
17-03-18 03:55:26.694 -07 000000467 INF: Autofocus start
17-03-18 03:55:26.694 -07 000000467 INF: MeasureProfile start
17-03-18 03:55:26.694 -07 000000591 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 03:55:26.694 -07 000000512 INF: FPGA: Recv FOCMRRCUR 
17-03-18 03:55:26.704 -07 000000591 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 03:55:26.704 -07 000000591 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 03:55:26.704 -07 000000467 INF: MeasureProfile done
17-03-18 03:55:26.704 -07 000000467 INF: X=8  Z correction [um]=0.01453479
17-03-18 03:55:26.704 -07 000000467 INF: Autofocus finished
17-03-18 03:55:26.904 -07 000000512 INF: FPGA: Recv FOCMRRIMG
17-03-18 03:55:26.904 -07 000000591 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 202 ms overall
17-03-18 03:55:26.914 -07 000000610 INF: ------------ Scan Snapping tile 17 at Y-position 73.17578125, Z-position -0.134732859845105. ----------
17-03-18 03:55:26.914 -07 000000610 INF: Cycle	118	Tile	17	Exposure Settings		A	412	G	198	T	198	C	412
17-03-18 03:55:26.914 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27949, sync = True, waitForSettling = True)
17-03-18 03:55:26.914 -07 000000610 INF: Z Motor: Moving to -0.127942 mm, started at -0.134733 mm, distance = 6.79 um
17-03-18 03:55:26.914 -07 000000610 INF: FPGA: Xmit ZDACW 27949\n [Z Motor]
17-03-18 03:55:26.914 -07 000000512 INF: FPGA: Recv ZDACW
17-03-18 03:55:26.924 -07 000000610 INF: FPGA: 'ZDACW 27949' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 03:55:26.924 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:55:26.924 -07 000000512 INF: FPGA: Recv ZDACR 27949
17-03-18 03:55:26.934 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:55:26.934 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 03:55:27.084 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:55:27.084 -07 000000591 INF: FPGA: Recv ZSGSRD 29210
17-03-18 03:55:27.094 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:55:27.094 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:55:27.094 -07 000000467 INF: FPGA: Recv ZSGSRD 29201
17-03-18 03:55:27.104 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:55:27.104 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:55:27.104 -07 000000467 INF: FPGA: Recv ZSGSRD 29210
17-03-18 03:55:27.114 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:55:27.114 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:55:27.114 -07 000000467 INF: FPGA: Recv ZSGSRD 29210
17-03-18 03:55:27.124 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:55:27.124 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:55:27.124 -07 000000467 INF: FPGA: Recv ZSGSRD 29210
17-03-18 03:55:27.134 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:55:27.134 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:55:27.134 -07 000000512 INF: FPGA: Recv ZSGSRD 29202
17-03-18 03:55:27.144 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:55:27.144 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:55:27.144 -07 000000591 INF: FPGA: Recv ZSGSRD 29208
17-03-18 03:55:27.154 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:55:27.154 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:55:27.154 -07 000000512 INF: FPGA: Recv ZSGSRD 29208
17-03-18 03:55:27.164 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:55:27.164 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:55:27.164 -07 000000512 INF: FPGA: Recv ZSGSRD 29206
17-03-18 03:55:27.174 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:55:27.174 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:55:27.174 -07 000000467 INF: FPGA: Recv ZSGSRD 29206
17-03-18 03:55:27.184 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:55:27.184 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:55:27.184 -07 000000467 INF: FPGA: Recv ZPIEZORD 24652
17-03-18 03:55:27.194 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:55:27.194 -07 000000610 INF: Z Motor: Piezo is near 32.7 V (nominally 0 to 100 V), expect near 42.6 V, since DAC is at 4.265 V. Piezo Error = -10.0 V.
17-03-18 03:55:27.194 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -127.9 um, Read 10 ADC samples: Avg = 29207 (-127.2 uncal um), Error = 0.8 uncal um, Median = 29208 (-127.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29201 (-127.1 uncal um), Max = 29210 (-127.2 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 03:55:27.194 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29207, posNoise = 3, negNoise = 6
17-03-18 03:55:27.194 -07 000000610 INF: Z Motor: After move to -0.127942, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:55:27.194 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 03:55:27.194 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:55:27.194 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:55:27.194 -07 000000591 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:55:27.194 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:55:27.194 -07 000000467 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 03:55:27.194 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:55:27.194 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 03:55:27.194 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 03:55:27.194 -07 000000591 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 03:55:27.194 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 03:55:27.194 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 03:55:27.194 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 03:55:27.194 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 03:55:27.194 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 03:55:27.204 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 03:55:27.204 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 03:55:27.204 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 03:55:27.204 -07 000000467 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 12 ms.
17-03-18 03:55:27.214 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-18 03:55:27.214 -07 000000591 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 03:55:27.214 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 412 412 198 198 28125 150\n [Camera]
17-03-18 03:55:27.414 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 03:55:27.824 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 604
17-03-18 03:55:27.824 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 604
17-03-18 03:55:27.834 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:55:27.834 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:55:27.834 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-18 03:55:27.834 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 604
17-03-18 03:55:27.834 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 604
17-03-18 03:55:27.834 -07 000000437 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:55:27.834 -07 000000437 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:55:27.834 -07 000000437 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-18 03:55:28.014 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28125 797
17-03-18 03:55:28.164 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP turning grn on 947
17-03-18 03:55:28.214 -07 000000437 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 381 ms.
17-03-18 03:55:28.214 -07 000000437 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 381 ms.
17-03-18 03:55:28.214 -07 000000437 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:55:28.214 -07 000000437 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:55:28.224 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 390 ms.
17-03-18 03:55:28.224 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-18 03:55:28.224 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:55:28.224 -07 000000437 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-18 03:55:28.224 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:55:28.224 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-18 03:55:28.364 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1145
17-03-18 03:55:28.364 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1145
17-03-18 03:55:28.364 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:55:28.364 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:55:28.364 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) start.
17-03-18 03:55:28.374 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1145
17-03-18 03:55:28.374 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1145
17-03-18 03:55:28.374 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:55:28.374 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:55:28.374 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 2486767776, 0x0, 418435064) start.
17-03-18 03:55:28.554 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP 1337
17-03-18 03:55:28.554 -07 000000012 INF: FPGA: Recv CAMDBLSNAP
17-03-18 03:55:28.554 -07 000000610 INF: FPGA: 'CAMDBLSNAP 412 412 198 198 28125 150' command took 2 ms to send, 1339 ms to get response, and 1344 ms overall
17-03-18 03:55:28.564 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 03:55:28.564 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 18 at Y-position 73.17578125, Z-Position -0.127955316035547. ------
17-03-18 03:55:28.564 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 03:55:28.564 -07 000000437 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.0226 mm, moving Z to -0.13398 mm
17-03-18 03:55:28.564 -07 000000437 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 03:55:28.564 -07 000000012 INF: Y Motor: Entering MoveAbsStepped (target = 118436 steps, sync = True, waitForSettling = True)
17-03-18 03:55:28.564 -07 000000012 INF: Y Motor: Moving to 74.0226 mm, started at 73.1758 mm, delta = 0.8468 mm
17-03-18 03:55:28.564 -07 000000591 INF: Z Motor: Entering MoveAbsStepped (DAC = 29268, sync = True, waitForSettling = False)
17-03-18 03:55:28.564 -07 000000591 INF: Z Motor: Moving to -0.133980 mm, started at -0.127955 mm, distance = -6.02 um
17-03-18 03:55:28.564 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-18 03:55:28.574 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 03:55:28.574 -07 000000591 INF: FPGA: Xmit ZDACW 29268\n [Z Motor]
17-03-18 03:55:28.574 -07 000000467 INF: FPGA: Recv ZDACW
17-03-18 03:55:28.584 -07 000000591 INF: FPGA: 'ZDACW 29268' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-18 03:55:28.584 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:55:28.584 -07 000000618 INF: FPGA: Recv YRDPOS 149864
17-03-18 03:55:28.594 -07 000000512 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 03:55:28.594 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-18 03:55:28.594 -07 000000012 INF: Y Motor: Encoder = 149864 = motor step 117081.3 = 73.1758 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:55:28.594 -07 000000012 INF: Y Motor: Last commanded position = 73.1926 mm (117108.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 03:55:28.594 -07 000000012 INF: Y Motor: Moving 1355 steps-35
17-03-18 03:55:28.604 -07 000000591 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:55:28.604 -07 000000618 INF: FPGA: Recv ZDACR 29268
17-03-18 03:55:28.614 -07 000000591 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 03:55:28.614 -07 000000591 INF: Z Motor: MoveAbsStepped took 42 ms (did NOT wait for settling yet))
17-03-18 03:55:28.614 -07 000000012 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 03:55:28.774 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) end. Duration was 404 ms.
17-03-18 03:55:28.774 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 03:55:28.774 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:55:28.774 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 2486767776, 0x0, 418435064) end. Duration was 403 ms.
17-03-18 03:55:28.774 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-18 03:55:28.774 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:55:28.774 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:55:28.784 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 03:55:28.784 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 412 ms.
17-03-18 03:55:28.784 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-18 03:55:28.794 -07 000000591 INF: FPGA: Recv FOCMRRFOC
17-03-18 03:55:28.794 -07 000000512 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 03:55:28.984 -07 000000474 INF: FPGA: Recv YMVTILE
17-03-18 03:55:28.984 -07 000000012 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 03:55:29.024 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:55:29.034 -07 000000467 INF: FPGA: Recv YRDPOS 151568
17-03-18 03:55:29.034 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 03:55:29.034 -07 000000012 INF: Y Motor: Encoder = 151568 = motor step 118412.5 = 74.0078 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:55:29.034 -07 000000012 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-18 03:55:29.034 -07 000000012 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.847 mm, average velocity = 2.128 mm/sec
17-03-18 03:55:29.984 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:55:29.984 -07 000000512 INF: FPGA: Recv YRDPOS 151568
17-03-18 03:55:29.994 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:55:29.994 -07 000000012 INF: Y Motor: Encoder = 151568 = motor step 118412.5 = 74.0078 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:55:30.014 -07 000000012 INF: Y Motor: After move to 74.022606, error = -0.014793, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 03:55:30.014 -07 000000012 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 03:55:30.014 -07 000000012 INF: Y Motor: Moved to 74.0078 after 1445 ms (table move)
17-03-18 03:55:30.014 -07 000000437 INF: Z Motor: EndOfMoveAbsStepped: target = -0.133980 mm (DAC = 29268)
17-03-18 03:55:30.014 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:55:30.024 -07 000000501 INF: FPGA: Recv ZSGSRD 30151
17-03-18 03:55:30.024 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 03:55:30.024 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:55:30.024 -07 000000501 INF: FPGA: Recv ZSGSRD 30153
17-03-18 03:55:30.034 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:55:30.034 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:55:30.034 -07 000000501 INF: FPGA: Recv ZSGSRD 30147
17-03-18 03:55:30.044 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:55:30.044 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:55:30.044 -07 000000501 INF: FPGA: Recv ZSGSRD 30147
17-03-18 03:55:30.054 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:55:30.054 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:55:30.054 -07 000000501 INF: FPGA: Recv ZSGSRD 30149
17-03-18 03:55:30.064 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:55:30.064 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:55:30.064 -07 000000501 INF: FPGA: Recv ZSGSRD 30142
17-03-18 03:55:30.074 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:55:30.074 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:55:30.074 -07 000000501 INF: FPGA: Recv ZSGSRD 30151
17-03-18 03:55:30.084 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:55:30.084 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:55:30.084 -07 000000447 INF: FPGA: Recv ZSGSRD 30145
17-03-18 03:55:30.094 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:55:30.094 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:55:30.094 -07 000000447 INF: FPGA: Recv ZSGSRD 30139
17-03-18 03:55:30.104 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:55:30.104 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:55:30.104 -07 000000447 INF: FPGA: Recv ZSGSRD 30150
17-03-18 03:55:30.114 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:55:30.114 -07 000000437 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:55:30.114 -07 000000447 INF: FPGA: Recv ZPIEZORD 25928
17-03-18 03:55:30.124 -07 000000437 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:55:30.124 -07 000000437 INF: Z Motor: Piezo is near 35.4 V (nominally 0 to 100 V), expect near 44.7 V, since DAC is at 4.466 V. Piezo Error = -9.3 V.
17-03-18 03:55:30.124 -07 000000437 INF: Z Motor: ReadAdcAverage: Commanded Z = -134.0 um, Read 10 ADC samples: Avg = 30147 (-133.2 uncal um), Error = 0.8 uncal um, Median = 30148 (-133.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 30139 (-133.2 uncal um), Max = 30153 (-133.2 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 03:55:30.124 -07 000000437 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30147, posNoise = 6, negNoise = 8
17-03-18 03:55:30.124 -07 000000437 INF: Z Motor: After move to -0.133980, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:55:30.124 -07 000000437 INF: Z Motor: Settle wait time = 1449 ms, measure time = 103 ms (allowed 150 ms), total time = 1552 ms
17-03-18 03:55:30.124 -07 000000437 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-18 03:55:30.174 -07 000000437 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1605 ms
17-03-18 03:55:30.174 -07 000000437 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 03:55:30.174 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:55:30.174 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:55:30.174 -07 000000012 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:55:30.174 -07 000000467 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 03:55:30.174 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:55:30.174 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:55:30.184 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 03:55:30.184 -07 000000467 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 03:55:30.184 -07 000000467 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 03:55:30.184 -07 000000467 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 03:55:30.194 -07 000000467 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 03:55:30.194 -07 000000467 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 03:55:30.194 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 03:55:30.234 -07 000000462 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 03:55:30.534 -07 000000437 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 03:55:30.534 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 03:55:30.534 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 03:55:30.534 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1512312592, 0x0, 559484976) start.
17-03-18 03:55:30.574 -07 000000474 INF: FPGA: Recv @CAMSNAP 380
17-03-18 03:55:30.574 -07 000000447 INF: FPGA: Recv CAMSNAP
17-03-18 03:55:30.574 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 384 ms overall
17-03-18 03:55:30.654 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1512312592, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 03:55:30.654 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:55:30.654 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 03:55:30.654 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-18 03:55:30.674 -07 000000437 INF: Autofocus start
17-03-18 03:55:30.674 -07 000000437 INF: MeasureProfile start
17-03-18 03:55:30.674 -07 000000474 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 03:55:30.674 -07 000000591 INF: FPGA: Recv FOCMRRCUR 
17-03-18 03:55:30.684 -07 000000474 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 03:55:30.684 -07 000000474 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 03:55:30.684 -07 000000437 INF: MeasureProfile done
17-03-18 03:55:30.684 -07 000000437 INF: X=-16  Z correction [um]=-0.08128808
17-03-18 03:55:30.684 -07 000000437 INF: Autofocus finished
17-03-18 03:55:30.884 -07 000000467 INF: FPGA: Recv FOCMRRIMG
17-03-18 03:55:30.884 -07 000000474 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 198 ms to get response, and 208 ms overall
17-03-18 03:55:30.894 -07 000000610 INF: ------------ Scan Snapping tile 18 at Y-position 74.0078125, Z-position -0.133994075448803. ----------
17-03-18 03:55:30.894 -07 000000610 INF: Cycle	118	Tile	18	Exposure Settings		A	412	G	198	T	198	C	412
17-03-18 03:55:30.904 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27763, sync = True, waitForSettling = True)
17-03-18 03:55:30.904 -07 000000610 INF: Z Motor: Moving to -0.127091 mm, started at -0.133994 mm, distance = 6.90 um
17-03-18 03:55:30.904 -07 000000610 INF: FPGA: Xmit ZDACW 27763\n [Z Motor]
17-03-18 03:55:30.904 -07 000000467 INF: FPGA: Recv ZDACW
17-03-18 03:55:30.914 -07 000000610 INF: FPGA: 'ZDACW 27763' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:55:30.914 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:55:30.914 -07 000000467 INF: FPGA: Recv ZDACR 27763
17-03-18 03:55:30.924 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:55:30.924 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 03:55:31.074 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:55:31.074 -07 000000474 INF: FPGA: Recv ZSGSRD 29072
17-03-18 03:55:31.084 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:55:31.084 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:55:31.084 -07 000000474 INF: FPGA: Recv ZSGSRD 29080
17-03-18 03:55:31.094 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:55:31.094 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:55:31.094 -07 000000474 INF: FPGA: Recv ZSGSRD 29067
17-03-18 03:55:31.104 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:55:31.104 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:55:31.104 -07 000000467 INF: FPGA: Recv ZSGSRD 29069
17-03-18 03:55:31.114 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:55:31.114 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:55:31.114 -07 000000474 INF: FPGA: Recv ZSGSRD 29079
17-03-18 03:55:31.124 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:55:31.124 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:55:31.124 -07 000000467 INF: FPGA: Recv ZSGSRD 29069
17-03-18 03:55:31.134 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:55:31.134 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:55:31.134 -07 000000474 INF: FPGA: Recv ZSGSRD 29075
17-03-18 03:55:31.144 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:55:31.144 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:55:31.144 -07 000000474 INF: FPGA: Recv ZSGSRD 29066
17-03-18 03:55:31.154 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:55:31.154 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:55:31.154 -07 000000467 INF: FPGA: Recv ZSGSRD 29079
17-03-18 03:55:31.164 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:55:31.164 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:55:31.164 -07 000000467 INF: FPGA: Recv ZSGSRD 29076
17-03-18 03:55:31.174 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:55:31.174 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:55:31.174 -07 000000467 INF: FPGA: Recv ZPIEZORD 24488
17-03-18 03:55:31.184 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:55:31.184 -07 000000610 INF: Z Motor: Piezo is near 32.3 V (nominally 0 to 100 V), expect near 42.4 V, since DAC is at 4.236 V. Piezo Error = -10.1 V.
17-03-18 03:55:31.184 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -127.1 um, Read 10 ADC samples: Avg = 29073 (-126.3 uncal um), Error = 0.8 uncal um, Median = 29074 (-126.3 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 29066 (-126.3 uncal um), Max = 29080 (-126.4 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 03:55:31.184 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29073, posNoise = 7, negNoise = 7
17-03-18 03:55:31.184 -07 000000610 INF: Z Motor: After move to -0.127091, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:55:31.184 -07 000000610 INF: Z Motor: MoveAbsStepped took 282 ms)
17-03-18 03:55:31.184 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:55:31.184 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:55:31.184 -07 000000474 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:55:31.184 -07 000000467 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:55:31.184 -07 000000474 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 03:55:31.184 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:55:31.184 -07 000000467 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 03:55:31.184 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 03:55:31.184 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 03:55:31.184 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 03:55:31.184 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 03:55:31.184 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 03:55:31.194 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 03:55:31.194 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 03:55:31.194 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 03:55:31.194 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 03:55:31.204 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 03:55:31.204 -07 000000474 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 03:55:31.204 -07 000000474 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 118, FrontChillerTemperature: 3.996267,
17-03-18 03:55:31.204 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 03:55:31.204 -07 000000467 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 03:55:31.214 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 412 412 198 198 27940 150\n [Camera]
17-03-18 03:55:31.414 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 03:55:31.624 -07 000000611 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 03:55:31.624 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 117. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1690, R2=1759, Total=3449. Warn if over 250 bubbles per interval.
17-03-18 03:55:31.824 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 604
17-03-18 03:55:31.824 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 604
17-03-18 03:55:31.824 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:55:31.824 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:55:31.824 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 2684358704, 0x0, 391868352) start.
17-03-18 03:55:31.824 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 604
17-03-18 03:55:31.824 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 604
17-03-18 03:55:31.824 -07 000000474 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:55:31.824 -07 000000474 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:55:31.824 -07 000000474 INF: Camera: sBCa_ReadImage(785074704, 2719780968, 0x0, 418435064) start.
17-03-18 03:55:32.014 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 27940 797
17-03-18 03:55:32.164 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP turning grn on 947
17-03-18 03:55:32.214 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 2684358704, 0x0, 391868352) end. Duration was 394 ms.
17-03-18 03:55:32.214 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 03:55:32.214 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:55:32.214 -07 000000474 INF: Camera: sBCa_ReadImage(785074704, 2719780968, 0x0, 418435064) end. Duration was 392 ms.
17-03-18 03:55:32.214 -07 000000474 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-18 03:55:32.214 -07 000000474 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:55:32.224 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 03:55:32.224 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 03:55:32.224 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 03:55:32.234 -07 000000474 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 405 ms.
17-03-18 03:55:32.364 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1145
17-03-18 03:55:32.364 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1145
17-03-18 03:55:32.364 -07 000000585 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:55:32.494 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1145
17-03-18 03:55:32.494 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1145
17-03-18 03:55:32.494 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:55:32.494 -07 000000585 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:55:32.494 -07 000000585 INF: Camera: sBCa_ReadImage(785074288, 2755203232, 0x0, 391868352) start.
17-03-18 03:55:32.494 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:55:32.494 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-18 03:55:32.554 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP 1338
17-03-18 03:55:32.554 -07 000000437 INF: FPGA: Recv CAMDBLSNAP
17-03-18 03:55:32.554 -07 000000610 INF: FPGA: 'CAMDBLSNAP 412 412 198 198 27940 150' command took 2 ms to send, 1335 ms to get response, and 1350 ms overall
17-03-18 03:55:32.554 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 03:55:32.554 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 19 at Y-position 74.0078125, Z-Position -0.127094471608551. ------
17-03-18 03:55:32.564 -07 000000618 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 03:55:32.564 -07 000000590 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.8526 mm, moving Z to -0.13330 mm
17-03-18 03:55:32.564 -07 000000590 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 03:55:32.564 -07 000000462 INF: Y Motor: Entering MoveAbsStepped (target = 119764 steps, sync = True, waitForSettling = True)
17-03-18 03:55:32.564 -07 000000608 INF: FPGA: Recv FOCMRRCUR 
17-03-18 03:55:32.564 -07 000000462 INF: Y Motor: Moving to 74.8526 mm, started at 74.0078 mm, delta = 0.8448 mm
17-03-18 03:55:32.564 -07 000000611 INF: Z Motor: Entering MoveAbsStepped (DAC = 29120, sync = True, waitForSettling = False)
17-03-18 03:55:32.564 -07 000000611 INF: Z Motor: Moving to -0.133303 mm, started at -0.127094 mm, distance = -6.21 um
17-03-18 03:55:32.574 -07 000000618 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:55:32.574 -07 000000611 INF: FPGA: Xmit ZDACW 29120\n [Z Motor]
17-03-18 03:55:32.574 -07 000000437 INF: FPGA: Recv ZDACW
17-03-18 03:55:32.584 -07 000000611 INF: FPGA: 'ZDACW 29120' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-18 03:55:32.584 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:55:32.584 -07 000000474 INF: FPGA: Recv YRDPOS 151569
17-03-18 03:55:32.594 -07 000000618 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 03:55:32.594 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-18 03:55:32.594 -07 000000462 INF: Y Motor: Encoder = 151569 = motor step 118413.3 = 74.0083 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:55:32.594 -07 000000462 INF: Y Motor: Last commanded position = 74.0226 mm (118436.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 03:55:32.594 -07 000000462 INF: Y Motor: Moving 1351 steps-30
17-03-18 03:55:32.604 -07 000000611 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:55:32.604 -07 000000437 INF: FPGA: Recv ZDACR 29120
17-03-18 03:55:32.614 -07 000000462 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 03:55:32.614 -07 000000611 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 03:55:32.614 -07 000000611 INF: Z Motor: MoveAbsStepped took 46 ms (did NOT wait for settling yet))
17-03-18 03:55:32.794 -07 000000502 INF: FPGA: Recv FOCMRRFOC
17-03-18 03:55:32.794 -07 000000618 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 03:55:32.884 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 383 ms.
17-03-18 03:55:32.884 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-18 03:55:32.884 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:55:32.884 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:55:32.884 -07 000000585 INF: Camera: sBCa_ReadImage(785074288, 2755203232, 0x0, 391868352) end. Duration was 394 ms.
17-03-18 03:55:32.884 -07 000000585 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-18 03:55:32.884 -07 000000585 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:55:32.894 -07 000000585 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:55:32.894 -07 000000585 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 528 ms.
17-03-18 03:55:32.894 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 03:55:32.984 -07 000000502 INF: FPGA: Recv YMVTILE
17-03-18 03:55:32.984 -07 000000462 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 392 ms overall
17-03-18 03:55:33.014 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:55:33.024 -07 000000437 INF: FPGA: Recv YRDPOS 153254
17-03-18 03:55:33.024 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 03:55:33.024 -07 000000462 INF: Y Motor: Encoder = 153254 = motor step 119729.7 = 74.8311 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:55:33.024 -07 000000462 INF: Y Motor: Position error before settling (table move) = -44 encoder counts (-0.021 mm)
17-03-18 03:55:33.024 -07 000000462 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 392 ms, distance = 0.845 mm, average velocity = 2.155 mm/sec
17-03-18 03:55:33.974 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:55:33.974 -07 000000502 INF: FPGA: Recv YRDPOS 153255
17-03-18 03:55:33.984 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:55:33.984 -07 000000462 INF: Y Motor: Encoder = 153255 = motor step 119730.5 = 74.8315 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:55:34.004 -07 000000462 INF: Y Motor: After move to 74.852608, error = -0.021065, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 03:55:34.004 -07 000000462 INF: Y Motor: Position error after settling (table move) = -43 encoder counts (-0.021 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 03:55:34.004 -07 000000462 INF: Y Motor: Moved to 74.8315 after 1437 ms (table move)
17-03-18 03:55:34.004 -07 000000590 INF: Z Motor: EndOfMoveAbsStepped: target = -0.133303 mm (DAC = 29120)
17-03-18 03:55:34.004 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:55:34.004 -07 000000585 INF: FPGA: Recv ZSGSRD 30042
17-03-18 03:55:34.014 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 03:55:34.014 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:55:34.014 -07 000000611 INF: FPGA: Recv ZSGSRD 30034
17-03-18 03:55:34.024 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:55:34.024 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:55:34.024 -07 000000625 INF: FPGA: Recv ZSGSRD 30037
17-03-18 03:55:34.034 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:55:34.034 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:55:34.034 -07 000000462 INF: FPGA: Recv ZSGSRD 30036
17-03-18 03:55:34.044 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:55:34.044 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:55:34.044 -07 000000447 INF: FPGA: Recv ZSGSRD 30032
17-03-18 03:55:34.054 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:55:34.054 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:55:34.054 -07 000000611 INF: FPGA: Recv ZSGSRD 30045
17-03-18 03:55:34.064 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:55:34.064 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:55:34.064 -07 000000437 INF: FPGA: Recv ZSGSRD 30049
17-03-18 03:55:34.074 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:55:34.074 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:55:34.074 -07 000000502 INF: FPGA: Recv ZSGSRD 30045
17-03-18 03:55:34.084 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:55:34.084 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:55:34.084 -07 000000625 INF: FPGA: Recv ZSGSRD 30028
17-03-18 03:55:34.094 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:55:34.094 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:55:34.094 -07 000000618 INF: FPGA: Recv ZSGSRD 30042
17-03-18 03:55:34.104 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:55:34.104 -07 000000590 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:55:34.104 -07 000000502 INF: FPGA: Recv ZPIEZORD 25816
17-03-18 03:55:34.114 -07 000000590 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:55:34.114 -07 000000590 INF: Z Motor: Piezo is near 35.1 V (nominally 0 to 100 V), expect near 44.4 V, since DAC is at 4.443 V. Piezo Error = -9.3 V.
17-03-18 03:55:34.114 -07 000000590 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.3 um, Read 10 ADC samples: Avg = 30039 (-132.5 uncal um), Error = 0.8 uncal um, Median = 30040 (-132.5 uncal um), StdDev = 7 (0.0 uncal um), Range = 21 (0.1 uncal um), Min = 30028 (-132.4 uncal um), Max = 30049 (-132.6 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 11 (0.1 uncal um)
17-03-18 03:55:34.114 -07 000000590 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30039, posNoise = 10, negNoise = 11
17-03-18 03:55:34.114 -07 000000590 INF: Z Motor: After move to -0.133303, error = 0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:55:34.114 -07 000000590 INF: Z Motor: Settle wait time = 1441 ms, measure time = 105 ms (allowed 150 ms), total time = 1546 ms
17-03-18 03:55:34.114 -07 000000590 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 03:55:34.164 -07 000000590 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1599 ms
17-03-18 03:55:34.164 -07 000000590 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 03:55:34.164 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:55:34.164 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:55:34.164 -07 000000625 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:55:34.164 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 03:55:34.164 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:55:34.164 -07 000000590 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:55:34.174 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 03:55:34.174 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 03:55:34.174 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 03:55:34.174 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 03:55:34.174 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 03:55:34.174 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-18 03:55:34.184 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 03:55:35.014 -07 000000590 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 03:55:35.014 -07 000000590 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 03:55:35.014 -07 000000590 INF: FPGA: Recv @CAMSNAP 380
17-03-18 03:55:35.014 -07 000000590 INF: FPGA: Recv CAMSNAP
17-03-18 03:55:35.014 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 03:55:35.014 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 821 ms to get response, and 827 ms overall
17-03-18 03:55:35.014 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 03:55:35.014 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-18 03:55:35.134 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 120 ms.
17-03-18 03:55:35.134 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:55:35.134 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 03:55:35.134 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 123 ms.
17-03-18 03:55:35.214 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 03:55:35.214 -07 000000462 INF: Autofocus start
17-03-18 03:55:35.214 -07 000000462 INF: MeasureProfile start
17-03-18 03:55:35.214 -07 000000608 INF: FPGA: Recv FOCMRRCUR 
17-03-18 03:55:35.224 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 03:55:35.224 -07 000000502 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 03:55:35.224 -07 000000462 INF: MeasureProfile done
17-03-18 03:55:35.224 -07 000000462 INF: X=16  Z correction [um]=0.0530179
17-03-18 03:55:35.224 -07 000000462 INF: Autofocus finished
17-03-18 03:55:35.424 -07 000000585 INF: FPGA: Recv FOCMRRIMG
17-03-18 03:55:35.424 -07 000000502 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 03:55:35.424 -07 000000610 INF: ------------ Scan Snapping tile 19 at Y-position 74.83154296875, Z-position -0.133300260537492. ----------
17-03-18 03:55:35.424 -07 000000610 INF: Cycle	118	Tile	19	Exposure Settings		A	412	G	198	T	198	C	412
17-03-18 03:55:35.434 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27644, sync = True, waitForSettling = True)
17-03-18 03:55:35.434 -07 000000610 INF: Z Motor: Moving to -0.126546 mm, started at -0.133300 mm, distance = 6.75 um
17-03-18 03:55:35.434 -07 000000610 INF: FPGA: Xmit ZDACW 27644\n [Z Motor]
17-03-18 03:55:35.434 -07 000000447 INF: FPGA: Recv ZDACW
17-03-18 03:55:35.444 -07 000000610 INF: FPGA: 'ZDACW 27644' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 03:55:35.444 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:55:35.444 -07 000000590 INF: FPGA: Recv ZDACR 27644
17-03-18 03:55:35.454 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:55:35.454 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 03:55:35.604 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:55:35.604 -07 000000462 INF: FPGA: Recv ZSGSRD 28989
17-03-18 03:55:35.614 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:55:35.614 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:55:35.614 -07 000000608 INF: FPGA: Recv ZSGSRD 28989
17-03-18 03:55:35.624 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:55:35.624 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:55:35.624 -07 000000585 INF: FPGA: Recv ZSGSRD 28988
17-03-18 03:55:35.634 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:55:35.634 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:55:35.634 -07 000000590 INF: FPGA: Recv ZSGSRD 28986
17-03-18 03:55:35.644 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:55:35.644 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:55:35.644 -07 000000462 INF: FPGA: Recv ZSGSRD 28989
17-03-18 03:55:35.654 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:55:35.654 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:55:35.654 -07 000000625 INF: FPGA: Recv ZSGSRD 28990
17-03-18 03:55:35.664 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 03:55:35.664 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:55:35.664 -07 000000608 INF: FPGA: Recv ZSGSRD 28986
17-03-18 03:55:35.674 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:55:35.674 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:55:35.674 -07 000000502 INF: FPGA: Recv ZSGSRD 28988
17-03-18 03:55:35.684 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:55:35.684 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:55:35.684 -07 000000447 INF: FPGA: Recv ZSGSRD 28989
17-03-18 03:55:35.694 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:55:35.694 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:55:35.694 -07 000000502 INF: FPGA: Recv ZSGSRD 28990
17-03-18 03:55:35.704 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:55:35.704 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:55:35.704 -07 000000608 INF: FPGA: Recv ZPIEZORD 24441
17-03-18 03:55:35.714 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:55:35.714 -07 000000610 INF: Z Motor: Piezo is near 32.2 V (nominally 0 to 100 V), expect near 42.2 V, since DAC is at 4.218 V. Piezo Error = -10.0 V.
17-03-18 03:55:35.714 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -126.5 um, Read 10 ADC samples: Avg = 28988 (-125.8 uncal um), Error = 0.8 uncal um, Median = 28989 (-125.8 uncal um), StdDev = 1 (0.0 uncal um), Range = 4 (0.0 uncal um), Min = 28986 (-125.8 uncal um), Max = 28990 (-125.8 uncal um), Pos Noise = 2 (0.0 uncal um), Neg Noise = 2 (0.0 uncal um)
17-03-18 03:55:35.714 -07 000000610 INF: Z Motor: ADC noise = 2, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 28988, posNoise = 2, negNoise = 2
17-03-18 03:55:35.714 -07 000000610 INF: Z Motor: After move to -0.126546, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:55:35.714 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 03:55:35.714 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:55:35.714 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:55:35.714 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:55:35.714 -07 000000625 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:55:35.714 -07 000000590 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 03:55:35.714 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:55:35.714 -07 000000608 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 03:55:35.714 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 03:55:35.714 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 03:55:35.714 -07 000000590 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 03:55:35.714 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 03:55:35.714 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 03:55:35.724 -07 000000590 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 03:55:35.724 -07 000000590 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 03:55:35.724 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 03:55:35.724 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 03:55:35.724 -07 000000590 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 03:55:35.724 -07 000000590 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 03:55:35.734 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 03:55:35.734 -07 000000608 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 03:55:35.734 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 412 412 198 198 27821 150\n [Camera]
17-03-18 03:55:35.934 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 03:55:36.344 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 605
17-03-18 03:55:36.344 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 605
17-03-18 03:55:36.344 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:55:36.344 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 605
17-03-18 03:55:36.344 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 605
17-03-18 03:55:36.354 -07 000000625 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:55:36.354 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:55:36.354 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 2334002848, 0x0, 391868352) start.
17-03-18 03:55:36.354 -07 000000625 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:55:36.354 -07 000000625 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-18 03:55:36.534 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 27821 797
17-03-18 03:55:36.574 -07 000000608 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 118, FrontChillerTemperature: 3.963579,
17-03-18 03:55:36.624 -07 000000590 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 03:55:36.624 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 117. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1690, R2=1759, Total=3449. Warn if over 250 bubbles per interval.
17-03-18 03:55:36.684 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning grn on 947
17-03-18 03:55:36.724 -07 000000625 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 373 ms.
17-03-18 03:55:36.724 -07 000000625 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 373 ms.
17-03-18 03:55:36.724 -07 000000625 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:55:36.734 -07 000000625 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:55:36.734 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 2334002848, 0x0, 391868352) end. Duration was 383 ms.
17-03-18 03:55:36.734 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-18 03:55:36.734 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:55:36.734 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:55:36.734 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-18 03:55:36.734 -07 000000625 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-18 03:55:36.884 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1145
17-03-18 03:55:36.884 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1145
17-03-18 03:55:36.884 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:55:37.004 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1145
17-03-18 03:55:37.004 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1145
17-03-18 03:55:37.004 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:55:37.014 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:55:37.014 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:55:37.014 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 2334002848, 0x0, 418435064) start.
17-03-18 03:55:37.014 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-18 03:55:37.074 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP 1338
17-03-18 03:55:37.074 -07 000000512 INF: FPGA: Recv CAMDBLSNAP
17-03-18 03:55:37.074 -07 000000610 INF: FPGA: 'CAMDBLSNAP 412 412 198 198 27821 150' command took 2 ms to send, 1339 ms to get response, and 1345 ms overall
17-03-18 03:55:37.414 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 2334002848, 0x0, 418435064) end. Duration was 402 ms.
17-03-18 03:55:37.414 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-18 03:55:37.414 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:55:37.414 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 402 ms.
17-03-18 03:55:37.414 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 03:55:37.414 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:55:37.424 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 03:55:37.424 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 03:55:37.424 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 534 ms.
17-03-18 03:55:37.424 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) start.
17-03-18 03:55:37.434 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 421 ms.
17-03-18 03:55:37.464 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) end. Duration was 41 ms.
17-03-18 03:55:37.464 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) start.
17-03-18 03:55:37.504 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) end. Duration was 42 ms.
17-03-18 03:55:37.524 -07 000000610 INF: Enabling Skipping AutoFocus in the next 3 cycles.
17-03-18 03:55:37.524 -07 000000610 INF: Imaging Cycle 118: ScanTilesCommand Cycle 118 time end. Duration was 170073 ms.
17-03-18 03:55:37.524 -07 000000610 INF: =================== Cycle #118 ===================
17-03-18 03:55:37.524 -07 000000610 INF: ===================  ===================
17-03-18 03:55:37.524 -07 000000462 INF: FPGA: Xmit EXLED1ADCR\n [GreenLED]
17-03-18 03:55:37.534 -07 000000501 INF: FPGA: Recv EXLED1ADCR 30
17-03-18 03:55:37.534 -07 000000462 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 2 ms to get response, and 5 ms overall
17-03-18 03:55:37.534 -07 000000462 INF: GreenLED: Using Green data: Photodiode ADC 30 --> 0.0 mW (old method), or 2.3 mW (new method). Difference = 2.3 mW
17-03-18 03:55:37.534 -07 000000462 INF: Predictive Diagnostic Log Cycle Entry Metrics: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 118, FrontChillerTemperature: 3.963579, FrontChillerHeatSinkTemperature: 0.390021, AmbientTemperature: 18.61526, FlowCellCompartmentTemperature: 21.9911, FlowCellTargetTemperature: 22, FlowCellHeatSinkTemperature: 18.30149, GreenLEDSensorTemperature: 26.76437, PhotodiodePowerAdcGreen: 30, PhotodiodePowerMwGreen: 2.291791
17-03-18 03:55:37.624 -07 000000610 INF: Y-Drift Offset assigned 0.002126916.