17-03-18 03:55:37.674 -07 000000610 INF: =================== Cycle #119 ===================
17-03-18 03:55:37.684 -07 000000610 INF: Y Motor: Entering MoveAbsStepped (target = 120609 steps, sync = True, waitForSettling = True)
17-03-18 03:55:37.684 -07 000000610 INF: Y Motor: Moving to 75.3806 mm, started at 74.8315 mm, delta = 0.5490 mm
17-03-18 03:55:37.684 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:55:37.684 -07 000000502 INF: FPGA: Recv YRDPOS 153255
17-03-18 03:55:37.694 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 03:55:37.694 -07 000000610 INF: Y Motor: Encoder = 153255 = motor step 119730.5 = 74.8315 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:55:37.694 -07 000000610 INF: Y Motor: Last commanded position = 74.8526 mm (119764.2 steps), delta from last commanded position = 0.5280 mm (844.8 steps). UsingTableMove = False
17-03-18 03:55:37.694 -07 000000610 INF: Y Motor: Moving to 154379 encoder counts
17-03-18 03:55:37.694 -07 000000610 INF: FPGA: Xmit YMVTO 154379\n [Y Motor]
17-03-18 03:55:37.804 -07 000000618 INF: FPGA: Recv YMVTO 154378 878
17-03-18 03:55:37.804 -07 000000610 INF: FPGA: 'YMVTO 154379' command took 0 ms to send, 107 ms to get response, and 116 ms overall
17-03-18 03:55:37.804 -07 000000610 INF: Y Motor: Position error before settling = -1 encoder counts (0.000 mm)
17-03-18 03:55:37.804 -07 000000610 INF: Y Motor: To move from 74.832 to 75.381 (0.549 mm) should take 878 steps, but required 878 steps (0.549 mm). Slippage = 0.000 mm (0.00%).
17-03-18 03:55:37.804 -07 000000610 INF: Y Motor: FPGA move command 'YMVTO 154379' took 117 ms, distance = 0.549 mm, average velocity = 4.693 mm/sec
17-03-18 03:55:40.804 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:55:40.804 -07 000000618 INF: FPGA: Recv YRDPOS 154386
17-03-18 03:55:40.814 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:55:40.814 -07 000000610 INF: Y Motor: Encoder = 154386 = motor step 120614.1 = 75.3838 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:55:40.834 -07 000000610 INF: Y Motor: After move to 75.380580, error = 0.003209, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 03:55:40.834 -07 000000610 INF: Y Motor: Position error after settling = 7 encoder counts (0.003 mm), Delta during settling = 8 counts (0.004 mm)
17-03-18 03:55:40.834 -07 000000610 INF: Y Motor: Moved to 75.3838 after 3156 ms
17-03-18 03:55:40.844 -07 000000610 INF: =================== Cycle #119, Flow Cell Temp 60° ===================
17-03-18 03:55:40.844 -07 000000610 INF: =================== Cycle #119, Flow Cell Temp 60°, FC temperature to 60° ===================
17-03-18 03:55:40.844 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 60000000\n [FlowCellTempControl]
17-03-18 03:55:40.844 -07 000000501 INF: FPGA: Recv TEC2TEMP 
17-03-18 03:55:40.854 -07 000000610 INF: FPGA: 'TEC2TEMP 0 60000000' command took 1 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 03:55:40.854 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-18 03:55:40.854 -07 000000512 INF: FPGA: Recv TEC2EN 
17-03-18 03:55:40.864 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:55:40.864 -07 000000610 INF: =================== Cycle #119, Flow Cell Temp 60° ===================
17-03-18 03:55:40.864 -07 000000610 INF: =================== Cycle #119 ===================
17-03-18 03:55:40.864 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-18 03:55:40.864 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 03:55:40.894 -07 000000610 INF: ReagentValve: Recv 18\r
17-03-18 03:55:40.894 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 24 to 3. Moving 3 positions.
17-03-18 03:55:40.894 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-18 03:55:41.194 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 03:55:41.214 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-18 03:55:41.214 -07 000000610 INF: ReagentValve: Move+ from 24 to 3 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-18 03:55:41.264 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 03:55:41.284 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 03:55:41.284 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 03:55:41.384 -07 000000610 INF: =================== Cycle #119, Pumping Reagent PR2 (3) ===================
17-03-18 03:55:41.384 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1
17-03-18 03:55:41.384 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 03:55:41.414 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-18 03:55:41.414 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-18 03:55:41.414 -07 000000610 INF: =================== Cycle #119, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 03:55:41.544 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r
17-03-18 03:55:41.584 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 03:55:41.624 -07 000000447 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 03:55:41.624 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 118. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1690, R2=1759, Total=3449. Warn if over 250 bubbles per interval.
17-03-18 03:55:41.934 -07 000000012 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 119, FrontChillerTemperature: 3.966297,
17-03-18 03:55:44.714 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 03:55:44.744 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 03:55:45.164 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 03:55:45.194 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 03:55:45.614 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 03:55:45.644 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 03:55:45.644 -07 000000610 INF: LanePump: Waited 4059 ms for pump motion to complete
17-03-18 03:55:45.644 -07 000000610 INF: =================== Cycle #119, Pumping Reagent PR2 (3) ===================
17-03-18 03:55:45.774 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 03:55:45.804 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 03:55:45.804 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 03:55:45.934 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 03:55:45.964 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 03:55:45.964 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 03:55:45.964 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 03:55:46.094 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 03:55:46.124 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 03:55:46.554 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 03:55:47.324 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 3 R1 3
17-03-18 03:55:47.324 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 118. Bubbles during last 5000 ms interval: R1=3, R2=3, Total=6. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1693, R2=1762, Total=3455. Warn if over 250 bubbles per interval.
17-03-18 03:55:47.334 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 03:55:47.334 -07 000000610 INF: LanePump: Waited 1209 ms for pump motion to complete
17-03-18 03:55:47.344 -07 000000610 INF: =================== Cycle #119 ===================
17-03-18 03:55:47.634 -07 000000502 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 119, FrontChillerTemperature: 3.989471,
17-03-18 03:55:47.804 -07 000000610 INF: AsyncDelayTimer waited 457ms
17-03-18 03:55:47.804 -07 000000610 INF: ReagentValve: Go to position 4 - PumpToFlowcell start
17-03-18 03:55:47.804 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 03:55:47.824 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 03:55:47.824 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 3 to 4. Moving 1 positions.
17-03-18 03:55:47.824 -07 000000610 INF: ReagentValve: Xmit +04\r
17-03-18 03:55:47.954 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 03:55:47.974 -07 000000610 INF: ReagentValve: Recv 00CD\r
17-03-18 03:55:47.974 -07 000000610 INF: ReagentValve: Move+ from 3 to 4 took 205 steps, expected 204. Error = 1 steps (0.5%)
17-03-18 03:55:48.024 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 03:55:48.044 -07 000000610 INF: ReagentValve: Recv 04\r
17-03-18 03:55:48.044 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 03:55:48.144 -07 000000610 INF: =================== Cycle #119, Pumping Reagent CMS (4) ===================
17-03-18 03:55:48.144 -07 000000610 INF: LanePump: Pumping from 4, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-18 03:55:48.144 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 03:55:48.174 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 03:55:48.174 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 03:55:48.174 -07 000000610 INF: =================== Cycle #119, Pumping Reagent CMS (4), Aspirating port InputPort ===================
17-03-18 03:55:48.304 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-18 03:55:48.344 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 03:55:49.784 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 03:55:49.814 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 03:55:50.234 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 03:55:50.264 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 03:55:50.264 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-18 03:55:50.264 -07 000000610 INF: =================== Cycle #119, Pumping Reagent CMS (4) ===================
17-03-18 03:55:50.394 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 03:55:50.424 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 03:55:50.424 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 03:55:50.554 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 03:55:50.584 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 03:55:50.584 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 03:55:50.584 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 03:55:50.714 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 03:55:50.744 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 03:55:51.174 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 03:55:51.204 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 03:55:51.204 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 03:55:51.204 -07 000000610 INF: =================== Cycle #119 ===================
17-03-18 03:55:51.624 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 2
17-03-18 03:55:51.624 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 118. Bubbles during last 5000 ms interval: R1=2, R2=0, Total=2. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1695, R2=1762, Total=3457. Warn if over 250 bubbles per interval.
17-03-18 03:55:52.424 -07 000000610 INF: AsyncDelayTimer waited 1217ms
17-03-18 03:55:52.424 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-18 03:55:52.424 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 03:55:52.444 -07 000000610 INF: ReagentValve: Recv 04\r
17-03-18 03:55:52.444 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 4 to 3. Moving 1 positions.
17-03-18 03:55:52.444 -07 000000610 INF: ReagentValve: Xmit -03\r
17-03-18 03:55:52.594 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 03:55:52.614 -07 000000610 INF: ReagentValve: Recv 00E1\r
17-03-18 03:55:52.614 -07 000000610 INF: ReagentValve: Move- from 4 to 3 took 225 steps, expected 204. Error = 21 steps (10.3%)
17-03-18 03:55:52.664 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 03:55:52.684 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 03:55:52.684 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 03:55:52.784 -07 000000610 INF: =================== Cycle #119, Pumping Reagent PR2 (3) ===================
17-03-18 03:55:52.784 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-18 03:55:52.784 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 03:55:52.814 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 03:55:52.814 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 03:55:52.814 -07 000000610 INF: =================== Cycle #119, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 03:55:52.944 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-18 03:55:52.984 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 03:55:52.994 -07 000000608 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 119, FrontChillerTemperature: 4.030322,
17-03-18 03:55:53.854 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 03:55:53.884 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 03:55:53.884 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-18 03:55:53.884 -07 000000610 INF: =================== Cycle #119, Pumping Reagent PR2 (3) ===================
17-03-18 03:55:54.014 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 03:55:54.044 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 03:55:54.044 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-18 03:55:54.174 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 03:55:54.204 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 03:55:54.204 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-18 03:55:54.204 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 03:55:54.334 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 03:55:54.364 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 03:55:54.794 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 03:55:54.824 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 03:55:54.824 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-18 03:55:54.824 -07 000000610 INF: =================== Cycle #119 ===================
17-03-18 03:55:54.824 -07 000000512 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 03:55:54.824 -07 000000625 INF: WaitCommand(10000) start
17-03-18 03:55:54.824 -07 000000512 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-18 03:55:56.044 -07 000000512 INF: AsyncDelayTimer waited 1213ms
17-03-18 03:55:56.044 -07 000000512 INF: LanePump: Xmit /1?\r
17-03-18 03:55:56.074 -07 000000512 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 03:55:56.074 -07 000000512 INF: LanePump: Current Position of Pump is: 1110
17-03-18 03:55:56.204 -07 000000512 INF: LanePump: Xmit /1V1500OA0R\r
17-03-18 03:55:56.244 -07 000000512 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 03:55:56.624 -07 000000012 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 2 R1 0
17-03-18 03:55:56.624 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 118. Bubbles during last 5000 ms interval: R1=0, R2=2, Total=2. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1695, R2=1764, Total=3459. Warn if over 250 bubbles per interval.
17-03-18 03:55:57.774 -07 000000512 INF: LanePump: Xmit /1Q\r
17-03-18 03:55:57.804 -07 000000512 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 03:55:58.224 -07 000000512 INF: LanePump: Xmit /1Q\r
17-03-18 03:55:58.254 -07 000000512 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 03:55:58.254 -07 000000512 INF: LanePump: Waited 2009 ms for pump motion to complete
17-03-18 03:55:58.254 -07 000000512 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 03:55:58.254 -07 000000512 INF: ===================  ===================
17-03-18 03:55:58.364 -07 000000012 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 119, FrontChillerTemperature: 4.024884,
17-03-18 03:56:01.624 -07 000000608 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 03:56:01.624 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 118. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1695, R2=1764, Total=3459. Warn if over 250 bubbles per interval.
17-03-18 03:56:03.734 -07 000000590 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 119, FrontChillerTemperature: 3.974486,
17-03-18 03:56:04.834 -07 000000625 INF: WaitCommand(10000) end
17-03-18 03:56:04.834 -07 000000610 INF: =================== Cycle #119, Pumping Reagent PR2 (3) ===================
17-03-18 03:56:04.834 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 250 µL, calling command Pumping to Flow Cell #1
17-03-18 03:56:04.834 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 03:56:04.874 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-18 03:56:04.874 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-18 03:56:04.874 -07 000000610 INF: =================== Cycle #119, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 03:56:05.004 -07 000000610 INF: LanePump: Xmit /1V400IP1500R\r
17-03-18 03:56:05.044 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 03:56:06.624 -07 000000618 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 03:56:06.624 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 118. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1695, R2=1764, Total=3459. Warn if over 250 bubbles per interval.
17-03-18 03:56:09.804 -07 000000625 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 119, FrontChillerTemperature: 4.007176,
17-03-18 03:56:11.174 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 03:56:11.204 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 03:56:11.624 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 03:56:11.624 -07 000000591 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 1
17-03-18 03:56:11.624 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 118. Bubbles during last 5000 ms interval: R1=1, R2=1, Total=2. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1696, R2=1765, Total=3461. Warn if over 250 bubbles per interval.
17-03-18 03:56:11.654 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 03:56:12.074 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 03:56:12.104 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 03:56:12.524 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 03:56:12.554 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 03:56:12.974 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 03:56:13.004 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 03:56:13.004 -07 000000610 INF: LanePump: Waited 7959 ms for pump motion to complete
17-03-18 03:56:13.004 -07 000000610 INF: =================== Cycle #119, Pumping Reagent PR2 (3) ===================
17-03-18 03:56:13.134 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 03:56:13.164 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-18 03:56:13.164 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-18 03:56:13.294 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 03:56:13.324 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-18 03:56:13.324 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-18 03:56:13.324 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 03:56:13.454 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 03:56:13.484 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 03:56:13.914 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 03:56:13.944 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 03:56:13.944 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 03:56:13.944 -07 000000610 INF: =================== Cycle #119 ===================
17-03-18 03:56:15.164 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-18 03:56:15.164 -07 000000610 INF: ReagentValve: Go to position 1 - PumpToFlowcell start
17-03-18 03:56:15.164 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 03:56:15.184 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 03:56:15.184 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 1. Moving 2 positions.
17-03-18 03:56:15.184 -07 000000610 INF: ReagentValve: Xmit -01\r
17-03-18 03:56:15.184 -07 000000625 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 119, FrontChillerTemperature: 3.983999,
17-03-18 03:56:15.394 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 03:56:15.414 -07 000000610 INF: ReagentValve: Recv 0198\r
17-03-18 03:56:15.414 -07 000000610 INF: ReagentValve: Move- from 3 to 1 took 408 steps, expected 408. Error = 0 steps (0.0%)
17-03-18 03:56:15.464 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 03:56:15.484 -07 000000610 INF: ReagentValve: Recv 01\r
17-03-18 03:56:15.484 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 03:56:15.584 -07 000000610 INF: =================== Cycle #119, Pumping Reagent IMT (1) ===================
17-03-18 03:56:15.584 -07 000000610 INF: LanePump: Pumping from 1, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-18 03:56:15.584 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 03:56:15.614 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-18 03:56:15.614 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-18 03:56:15.614 -07 000000610 INF: =================== Cycle #119, Pumping Reagent IMT (1), Aspirating port InputPort ===================
17-03-18 03:56:15.744 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-18 03:56:15.784 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 03:56:16.624 -07 000000591 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 1
17-03-18 03:56:16.624 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 118. Bubbles during last 5000 ms interval: R1=1, R2=0, Total=1. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1697, R2=1765, Total=3462. Warn if over 250 bubbles per interval.
17-03-18 03:56:17.224 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 03:56:17.254 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 03:56:17.674 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 03:56:17.704 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 03:56:17.704 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-18 03:56:17.704 -07 000000610 INF: =================== Cycle #119, Pumping Reagent IMT (1) ===================
17-03-18 03:56:17.834 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 03:56:17.864 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-18 03:56:17.864 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-18 03:56:17.994 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 03:56:18.024 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-18 03:56:18.024 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-18 03:56:18.024 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 03:56:18.154 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 03:56:18.184 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 03:56:18.614 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 03:56:18.644 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 03:56:18.644 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 03:56:18.644 -07 000000610 INF: =================== Cycle #119 ===================
17-03-18 03:56:19.864 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-18 03:56:19.864 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-18 03:56:19.864 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 03:56:20.694 -07 000000610 INF: ReagentValve: Recv 01\r
17-03-18 03:56:20.694 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 1 to 3. Moving 2 positions.
17-03-18 03:56:20.694 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-18 03:56:20.924 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 03:56:20.944 -07 000000610 INF: ReagentValve: Recv 01AC\r
17-03-18 03:56:20.944 -07 000000610 INF: ReagentValve: Move+ from 1 to 3 took 428 steps, expected 408. Error = 20 steps (4.9%)
17-03-18 03:56:20.984 -07 000000625 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 119, FrontChillerTemperature: 3.973092,
17-03-18 03:56:20.994 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 03:56:21.014 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 03:56:21.014 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 03:56:21.114 -07 000000610 INF: =================== Cycle #119, Pumping Reagent PR2 (3) ===================
17-03-18 03:56:21.114 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-18 03:56:21.114 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 03:56:21.154 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-18 03:56:21.154 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-18 03:56:21.154 -07 000000610 INF: =================== Cycle #119, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 03:56:21.284 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-18 03:56:21.324 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 03:56:21.624 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 0
17-03-18 03:56:21.624 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 118. Bubbles during last 5000 ms interval: R1=0, R2=1, Total=1. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1697, R2=1766, Total=3463. Warn if over 250 bubbles per interval.
17-03-18 03:56:22.194 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 03:56:22.224 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 03:56:22.224 -07 000000610 INF: LanePump: Waited 900 ms for pump motion to complete
17-03-18 03:56:22.224 -07 000000610 INF: =================== Cycle #119, Pumping Reagent PR2 (3) ===================
17-03-18 03:56:22.354 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 03:56:22.384 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-18 03:56:22.384 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-18 03:56:22.514 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 03:56:22.544 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-18 03:56:22.544 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-18 03:56:22.544 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 03:56:22.674 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 03:56:22.704 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 03:56:23.134 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 03:56:23.164 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 03:56:23.164 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 03:56:23.164 -07 000000610 INF: =================== Cycle #119 ===================
17-03-18 03:56:23.164 -07 000000610 INF: =================== Cycle #119, Flow Cell Temp 65° ===================
17-03-18 03:56:23.164 -07 000000610 INF: =================== Cycle #119, Flow Cell Temp 65°, FC temperature to 65° ===================
17-03-18 03:56:23.164 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 65000000\n [FlowCellTempControl]
17-03-18 03:56:23.164 -07 000000512 INF: FPGA: Recv TEC2TEMP 
17-03-18 03:56:23.174 -07 000000610 INF: FPGA: 'TEC2TEMP 0 65000000' command took 1 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 03:56:23.174 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-18 03:56:23.174 -07 000000591 INF: FPGA: Recv TEC2EN 
17-03-18 03:56:23.184 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:56:23.184 -07 000000610 INF: =================== Cycle #119, Flow Cell Temp 65° ===================
17-03-18 03:56:23.184 -07 000000610 INF: =================== Cycle #119 ===================
17-03-18 03:56:23.184 -07 000000610 INF: WaitCommand(30000) start
17-03-18 03:56:26.344 -07 000000591 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 119, FrontChillerTemperature: 3.978563,
17-03-18 03:56:26.624 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 03:56:26.624 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 118. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1697, R2=1766, Total=3463. Warn if over 250 bubbles per interval.
17-03-18 03:56:31.624 -07 000000590 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 03:56:31.624 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 118. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1697, R2=1766, Total=3463. Warn if over 250 bubbles per interval.
17-03-18 03:56:31.714 -07 000000591 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 119, FrontChillerTemperature: 3.973092,
17-03-18 03:56:36.624 -07 000000590 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 03:56:36.624 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 118. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1697, R2=1766, Total=3463. Warn if over 250 bubbles per interval.
17-03-18 03:56:37.084 -07 000000591 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 119, FrontChillerTemperature: 3.978563,
17-03-18 03:56:41.624 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 03:56:41.624 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 118. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1697, R2=1766, Total=3463. Warn if over 250 bubbles per interval.
17-03-18 03:56:42.444 -07 000000591 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 119, FrontChillerTemperature: 3.99219,
17-03-18 03:56:46.624 -07 000000012 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 03:56:46.624 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 118. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1697, R2=1766, Total=3463. Warn if over 250 bubbles per interval.
17-03-18 03:56:47.804 -07 000000618 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 119, FrontChillerTemperature: 3.99219,
17-03-18 03:56:51.624 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 03:56:51.624 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 118. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1697, R2=1766, Total=3463. Warn if over 250 bubbles per interval.
17-03-18 03:56:53.164 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 119, FrontChillerTemperature: 4.020806,
17-03-18 03:56:53.194 -07 000000610 INF: WaitCommand(30000) end
17-03-18 03:56:53.194 -07 000000610 INF: =================== Cycle #119, Pumping Reagent PR2 (3) ===================
17-03-18 03:56:53.194 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 5 µL, calling command Pumping to Flow Cell #1
17-03-18 03:56:53.294 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 03:56:53.324 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-18 03:56:53.324 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-18 03:56:53.324 -07 000000610 INF: =================== Cycle #119, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 03:56:53.454 -07 000000610 INF: LanePump: Xmit /1V400IP30R\r
17-03-18 03:56:53.494 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 03:56:54.034 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 03:56:54.064 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 03:56:54.064 -07 000000610 INF: LanePump: Waited 569 ms for pump motion to complete
17-03-18 03:56:54.064 -07 000000610 INF: =================== Cycle #119, Pumping Reagent PR2 (3) ===================
17-03-18 03:56:54.194 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 03:56:54.224 -07 000000610 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-18 03:56:54.224 -07 000000610 INF: LanePump: Current Position of Pump is: 1920
17-03-18 03:56:54.354 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 03:56:54.384 -07 000000610 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-18 03:56:54.384 -07 000000610 INF: LanePump: Current Position of Pump is: 1920
17-03-18 03:56:54.384 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 03:56:54.514 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 03:56:54.544 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 03:56:54.974 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 03:56:55.004 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 03:56:55.004 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 03:56:55.004 -07 000000610 INF: =================== Cycle #119 ===================
17-03-18 03:56:55.004 -07 000000618 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 03:56:55.004 -07 000000462 INF: WaitCommand(30000) start
17-03-18 03:56:55.004 -07 000000618 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-18 03:56:56.224 -07 000000618 INF: AsyncDelayTimer waited 1213ms
17-03-18 03:56:56.224 -07 000000618 INF: LanePump: Xmit /1?\r
17-03-18 03:56:56.254 -07 000000618 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-18 03:56:56.254 -07 000000618 INF: LanePump: Current Position of Pump is: 1920
17-03-18 03:56:56.384 -07 000000618 INF: LanePump: Xmit /1V1500OA0R\r
17-03-18 03:56:56.424 -07 000000618 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 03:56:56.624 -07 000000590 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 03:56:56.624 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 118. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1697, R2=1766, Total=3463. Warn if over 250 bubbles per interval.
17-03-18 03:56:58.524 -07 000000590 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 119, FrontChillerTemperature: 4.000345,
17-03-18 03:56:58.764 -07 000000618 INF: LanePump: Xmit /1Q\r
17-03-18 03:56:58.794 -07 000000618 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 03:56:59.214 -07 000000618 INF: LanePump: Xmit /1Q\r
17-03-18 03:56:59.244 -07 000000618 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 03:56:59.244 -07 000000618 INF: LanePump: Waited 2819 ms for pump motion to complete
17-03-18 03:56:59.244 -07 000000618 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 03:56:59.244 -07 000000618 INF: ===================  ===================
17-03-18 03:57:01.624 -07 000000590 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 03:57:01.624 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 118. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1697, R2=1766, Total=3463. Warn if over 250 bubbles per interval.
17-03-18 03:57:03.884 -07 000000502 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 119, FrontChillerTemperature: 4.003063,
17-03-18 03:57:06.624 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 03:57:06.624 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 118. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1697, R2=1766, Total=3463. Warn if over 250 bubbles per interval.
17-03-18 03:57:09.244 -07 000000618 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 119, FrontChillerTemperature: 3.979922,
17-03-18 03:57:11.624 -07 000000480 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 03:57:11.624 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 118. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1697, R2=1766, Total=3463. Warn if over 250 bubbles per interval.
17-03-18 03:57:15.324 -07 000000502 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 119, FrontChillerTemperature: 3.98264,
17-03-18 03:57:16.624 -07 000000480 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 03:57:16.624 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 118. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1697, R2=1766, Total=3463. Warn if over 250 bubbles per interval.
17-03-18 03:57:20.684 -07 000000480 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 119, FrontChillerTemperature: 4.012614,
17-03-18 03:57:21.624 -07 000000480 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 03:57:21.624 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 118. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1697, R2=1766, Total=3463. Warn if over 250 bubbles per interval.
17-03-18 03:57:25.014 -07 000000462 INF: WaitCommand(30000) end
17-03-18 03:57:25.014 -07 000000610 INF: =================== Cycle #119, Flow Cell Temp 22° ===================
17-03-18 03:57:25.014 -07 000000610 INF: =================== Cycle #119, Flow Cell Temp 22°, FC temperature to 22° ===================
17-03-18 03:57:25.014 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 22000000\n [FlowCellTempControl]
17-03-18 03:57:25.024 -07 000000480 INF: FPGA: Recv TEC2TEMP 
17-03-18 03:57:25.024 -07 000000610 INF: FPGA: 'TEC2TEMP 0 22000000' command took 1 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 03:57:25.024 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-18 03:57:25.024 -07 000000618 INF: FPGA: Recv TEC2EN 
17-03-18 03:57:25.034 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:57:25.034 -07 000000610 INF: =================== Cycle #119, Flow Cell Temp 22° ===================
17-03-18 03:57:25.034 -07 000000610 INF: =================== Cycle #119 ===================
17-03-18 03:57:25.034 -07 000000610 INF: =================== Cycle #119, Pumping Reagent PR2 (3) ===================
17-03-18 03:57:25.034 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1
17-03-18 03:57:25.034 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 03:57:25.074 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-18 03:57:25.074 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-18 03:57:25.074 -07 000000610 INF: =================== Cycle #119, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 03:57:25.204 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r
17-03-18 03:57:25.244 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 03:57:26.044 -07 000000012 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 119, FrontChillerTemperature: 3.997626,
17-03-18 03:57:26.624 -07 000000591 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 03:57:26.624 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 118. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1697, R2=1766, Total=3463. Warn if over 250 bubbles per interval.
17-03-18 03:57:28.374 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 03:57:28.404 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 03:57:28.824 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 03:57:28.854 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 03:57:29.274 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 03:57:29.304 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 03:57:29.304 -07 000000610 INF: LanePump: Waited 4059 ms for pump motion to complete
17-03-18 03:57:29.304 -07 000000610 INF: =================== Cycle #119, Pumping Reagent PR2 (3) ===================
17-03-18 03:57:29.434 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 03:57:29.464 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 03:57:29.464 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 03:57:29.594 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 03:57:29.624 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 03:57:29.624 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 03:57:29.624 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 03:57:29.754 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 03:57:29.784 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 03:57:30.214 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 03:57:30.244 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 03:57:30.244 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-18 03:57:30.244 -07 000000610 INF: =================== Cycle #119 ===================
17-03-18 03:57:31.404 -07 000000591 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 119, FrontChillerTemperature: 3.990831,
17-03-18 03:57:31.464 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-18 03:57:31.464 -07 000000610 INF: ReagentValve: Go to position 2 - PumpToFlowcell start
17-03-18 03:57:31.464 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 03:57:31.484 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 03:57:31.484 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 2. Moving 1 positions.
17-03-18 03:57:31.484 -07 000000610 INF: ReagentValve: Xmit -02\r
17-03-18 03:57:31.624 -07 000000591 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 2
17-03-18 03:57:31.624 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 118. Bubbles during last 5000 ms interval: R1=2, R2=1, Total=3. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1699, R2=1767, Total=3466. Warn if over 250 bubbles per interval.
17-03-18 03:57:31.634 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 03:57:31.654 -07 000000610 INF: ReagentValve: Recv 00E3\r
17-03-18 03:57:31.654 -07 000000610 INF: ReagentValve: Move- from 3 to 2 took 227 steps, expected 204. Error = 23 steps (11.3%)
17-03-18 03:57:31.704 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 03:57:31.724 -07 000000610 INF: ReagentValve: Recv 02\r
17-03-18 03:57:31.724 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 03:57:31.824 -07 000000610 INF: =================== Cycle #119, Pumping Reagent USM (2) ===================
17-03-18 03:57:31.824 -07 000000610 INF: LanePump: Pumping from 2, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-18 03:57:31.824 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 03:57:31.854 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 03:57:31.854 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 03:57:31.854 -07 000000610 INF: =================== Cycle #119, Pumping Reagent USM (2), Aspirating port InputPort ===================
17-03-18 03:57:31.984 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-18 03:57:32.024 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 03:57:33.464 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 03:57:33.494 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 03:57:33.914 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 03:57:33.944 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 03:57:33.944 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-18 03:57:33.944 -07 000000610 INF: =================== Cycle #119, Pumping Reagent USM (2) ===================
17-03-18 03:57:34.074 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 03:57:34.104 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 03:57:34.104 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 03:57:34.234 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 03:57:34.264 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 03:57:34.264 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 03:57:34.264 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 03:57:34.394 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 03:57:34.424 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 03:57:34.854 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 03:57:34.884 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 03:57:34.884 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-18 03:57:34.884 -07 000000610 INF: =================== Cycle #119 ===================
17-03-18 03:57:36.104 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-18 03:57:36.104 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-18 03:57:36.104 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 03:57:36.124 -07 000000610 INF: ReagentValve: Recv 02\r
17-03-18 03:57:36.124 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 2 to 3. Moving 1 positions.
17-03-18 03:57:36.124 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-18 03:57:36.274 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 03:57:36.294 -07 000000610 INF: ReagentValve: Recv 00E3\r
17-03-18 03:57:36.294 -07 000000610 INF: ReagentValve: Move+ from 2 to 3 took 227 steps, expected 204. Error = 23 steps (11.3%)
17-03-18 03:57:36.344 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 03:57:36.364 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 03:57:36.364 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 03:57:36.464 -07 000000610 INF: =================== Cycle #119, Pumping Reagent PR2 (3) ===================
17-03-18 03:57:36.464 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-18 03:57:36.464 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 03:57:36.494 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 03:57:36.494 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 03:57:36.494 -07 000000610 INF: =================== Cycle #119, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 03:57:36.624 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-18 03:57:36.624 -07 000000618 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 1
17-03-18 03:57:36.624 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 118. Bubbles during last 5000 ms interval: R1=1, R2=0, Total=1. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1700, R2=1767, Total=3467. Warn if over 250 bubbles per interval.
17-03-18 03:57:36.664 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 03:57:36.764 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 119, FrontChillerTemperature: 4.011254,
17-03-18 03:57:37.534 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 03:57:37.564 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 03:57:37.564 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-18 03:57:37.564 -07 000000610 INF: =================== Cycle #119, Pumping Reagent PR2 (3) ===================
17-03-18 03:57:37.694 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 03:57:37.724 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 03:57:37.724 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-18 03:57:37.854 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 03:57:37.884 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 03:57:37.884 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-18 03:57:37.884 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 03:57:38.014 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 03:57:38.044 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 03:57:38.474 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 03:57:38.504 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 03:57:38.504 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-18 03:57:38.504 -07 000000610 INF: =================== Cycle #119 ===================
17-03-18 03:57:38.504 -07 000000012 INF: WaitCommand(10000) start
17-03-18 03:57:38.504 -07 000000512 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 03:57:38.504 -07 000000512 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-18 03:57:39.724 -07 000000512 INF: AsyncDelayTimer waited 1214ms
17-03-18 03:57:39.724 -07 000000512 INF: LanePump: Xmit /1?\r
17-03-18 03:57:39.754 -07 000000512 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 03:57:39.754 -07 000000512 INF: LanePump: Current Position of Pump is: 1110
17-03-18 03:57:39.884 -07 000000512 INF: LanePump: Xmit /1V1500OA0R\r
17-03-18 03:57:39.924 -07 000000512 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 03:57:41.454 -07 000000512 INF: LanePump: Xmit /1Q\r
17-03-18 03:57:41.484 -07 000000512 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 03:57:41.624 -07 000000618 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 1
17-03-18 03:57:41.624 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 118. Bubbles during last 5000 ms interval: R1=1, R2=1, Total=2. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1701, R2=1768, Total=3469. Warn if over 250 bubbles per interval.
17-03-18 03:57:41.904 -07 000000512 INF: LanePump: Xmit /1Q\r
17-03-18 03:57:41.934 -07 000000512 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 03:57:41.934 -07 000000512 INF: LanePump: Waited 2009 ms for pump motion to complete
17-03-18 03:57:41.934 -07 000000512 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 03:57:41.934 -07 000000512 INF: ===================  ===================
17-03-18 03:57:42.124 -07 000000618 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 119, FrontChillerTemperature: 4.020806,
17-03-18 03:57:46.624 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 0
17-03-18 03:57:46.624 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 118. Bubbles during last 5000 ms interval: R1=0, R2=1, Total=1. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1701, R2=1769, Total=3470. Warn if over 250 bubbles per interval.
17-03-18 03:57:47.484 -07 000000502 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 119, FrontChillerTemperature: 4.014009,
17-03-18 03:57:48.514 -07 000000012 INF: WaitCommand(10000) end
17-03-18 03:57:48.514 -07 000000610 INF: =================== Cycle #119, Imaging ===================
17-03-18 03:57:48.514 -07 000000610 INF: Imaging Cycle 119: ScanTilesCommand Cycle 119 time start.
17-03-18 03:57:48.514 -07 000000610 INF: ReagentValve: Go to position 24 (Plug) - Start of ScanTilesCommand
17-03-18 03:57:48.514 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 03:57:48.544 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 03:57:48.544 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 24. Moving 3 positions.
17-03-18 03:57:48.544 -07 000000610 INF: ReagentValve: Xmit -18\r
17-03-18 03:57:48.844 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 03:57:48.864 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-18 03:57:48.864 -07 000000610 INF: ReagentValve: Move- from 3 to 24 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-18 03:57:48.914 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 03:57:48.934 -07 000000610 INF: ReagentValve: Recv 18\r
17-03-18 03:57:48.934 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:57:48.934 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:57:48.934 -07 000000512 INF: RedLED: Snapping RedLED at power = 1930.000 mW, snap mode for ~0 ms start.
17-03-18 03:57:48.934 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:57:48.934 -07 000000512 INF: FPGA: Xmit EXLED1ON\n [RedLED]
17-03-18 03:57:48.934 -07 000000591 INF: FPGA: Recv EXLED1ON 
17-03-18 03:57:48.944 -07 000000512 INF: FPGA: 'EXLED1ON' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 03:57:48.944 -07 000000512 INF: FPGA: Xmit EXLED1ADCR\n [RedLED]
17-03-18 03:57:48.944 -07 000000618 INF: FPGA: Recv EXLED1ADCR 23209
17-03-18 03:57:48.954 -07 000000512 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:57:48.954 -07 000000512 INF: RedLED: Using Red data: Photodiode ADC 23209 --> 7.5 mW (old method), or 205.7 mW (new method). Difference = 198.2 mW
17-03-18 03:57:48.954 -07 000000512 INF: FPGA: Xmit EXLED1OFF\n [RedLED]
17-03-18 03:57:48.954 -07 000000579 INF: FPGA: Recv EXLED1OFF 
17-03-18 03:57:48.964 -07 000000512 INF: FPGA: 'EXLED1OFF' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:57:48.964 -07 000000512 INF: RedLED: LED was on for 19 ms
17-03-18 03:57:48.964 -07 000000512 INF: RedLED: Snapping RedLED at power = 1930.000 mW, snap mode for ~0 ms end. Duration was 25 ms.
17-03-18 03:57:48.964 -07 000000512 INF: GreenLED: Snapping GreenLED at power = 5964.000 mW, snap mode for ~0 ms start.
17-03-18 03:57:48.964 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:57:48.964 -07 000000512 INF: FPGA: Xmit EXLED2ON\n [GreenLED]
17-03-18 03:57:48.964 -07 000000480 INF: FPGA: Recv EXLED2ON 
17-03-18 03:57:48.974 -07 000000512 INF: FPGA: 'EXLED2ON' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 03:57:48.974 -07 000000512 INF: FPGA: Xmit EXLED1ADCR\n [GreenLED]
17-03-18 03:57:48.974 -07 000000591 INF: FPGA: Recv EXLED1ADCR 2095
17-03-18 03:57:48.984 -07 000000512 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:57:48.984 -07 000000512 INF: GreenLED: Using Green data: Photodiode ADC 2095 --> 0.9 mW (old method), or 182.1 mW (new method). Difference = 181.2 mW
17-03-18 03:57:48.984 -07 000000512 INF: FPGA: Xmit EXLED2OFF\n [GreenLED]
17-03-18 03:57:48.984 -07 000000618 INF: FPGA: Recv EXLED2OFF 
17-03-18 03:57:48.994 -07 000000512 INF: FPGA: 'EXLED2OFF' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:57:48.994 -07 000000512 INF: GreenLED: LED was on for 20 ms
17-03-18 03:57:48.994 -07 000000512 INF: GreenLED: Snapping GreenLED at power = 5964.000 mW, snap mode for ~0 ms end. Duration was 28 ms.
17-03-18 03:57:48.994 -07 000000610 INF: FPGA: Xmit EMCUR 80\n [Compensator]
17-03-18 03:57:48.994 -07 000000012 INF: FPGA: Recv EMCUR 
17-03-18 03:57:49.004 -07 000000610 INF: FPGA: 'EMCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 03:57:49.004 -07 000000610 INF: FPGA: Xmit EMOUT 20 70\n [Compensator]
17-03-18 03:57:49.504 -07 000000012 INF: FPGA: Recv EMOUT
17-03-18 03:57:49.504 -07 000000610 INF: FPGA: 'EMOUT 20 70' command took 0 ms to send, 493 ms to get response, and 502 ms overall
17-03-18 03:57:49.504 -07 000000610 INF: FPGA: Xmit EMCUR 75\n [Compensator]
17-03-18 03:57:49.504 -07 000000012 INF: FPGA: Recv EMCUR 
17-03-18 03:57:49.514 -07 000000610 INF: FPGA: 'EMCUR 75' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 03:57:49.514 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 03:57:49.514 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 1 at Y-position 75.3837890625, Z-Position -0.126548413576502. ------
17-03-18 03:57:49.514 -07 000000591 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 03:57:49.514 -07 000000618 INF: Y Motor: MoveYZ optimized starting. Moving Y to 59.9126 mm, moving Z to -0.17864 mm
17-03-18 03:57:49.514 -07 000000618 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 03:57:49.524 -07 000000579 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True)
17-03-18 03:57:49.524 -07 000000579 INF: Y Motor: Moving to 59.9126 mm, started at 75.3838 mm, delta = -15.4712 mm
17-03-18 03:57:49.524 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-18 03:57:49.524 -07 000000591 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 03:57:49.524 -07 000000579 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:57:49.524 -07 000000012 INF: Z Motor: Entering MoveAbsStepped (DAC = 39024, sync = True, waitForSettling = False)
17-03-18 03:57:49.524 -07 000000012 INF: Z Motor: Moving to -0.178640 mm, started at -0.126548 mm, distance = -52.09 um
17-03-18 03:57:49.524 -07 000000502 INF: FPGA: Recv YRDPOS 154386
17-03-18 03:57:49.534 -07 000000579 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 03:57:49.534 -07 000000579 INF: Y Motor: Encoder = 154386 = motor step 120614.1 = 75.3838 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:57:49.534 -07 000000579 INF: Y Motor: Last commanded position = 75.3806 mm (120608.9 steps), delta from last commanded position = -15.4680 mm (-24748.8 steps). UsingTableMove = False
17-03-18 03:57:49.534 -07 000000579 INF: Y Motor: Moving to 122701 encoder counts
17-03-18 03:57:49.534 -07 000000012 INF: FPGA: Xmit ZDACW 39024\n [Z Motor]
17-03-18 03:57:49.534 -07 000000480 INF: FPGA: Recv ZDACW
17-03-18 03:57:49.544 -07 000000012 INF: FPGA: 'ZDACW 39024' command took 1 ms to send, 0 ms to get response, and 17 ms overall
17-03-18 03:57:49.544 -07 000000591 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 03:57:49.554 -07 000000579 INF: FPGA: Xmit YMVTO 122701\n [Y Motor]
17-03-18 03:57:49.564 -07 000000012 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:57:49.564 -07 000000502 INF: FPGA: Recv ZDACR 39024
17-03-18 03:57:49.574 -07 000000012 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 03:57:49.574 -07 000000012 INF: Z Motor: MoveAbsStepped took 48 ms (did NOT wait for settling yet))
17-03-18 03:57:49.744 -07 000000480 INF: FPGA: Recv FOCMRRFOC
17-03-18 03:57:49.744 -07 000000591 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 221 ms overall
17-03-18 03:57:51.234 -07 000000591 INF: FPGA: Recv YMVTO 122703 24782
17-03-18 03:57:51.234 -07 000000579 INF: FPGA: 'YMVTO 122701' command took 0 ms to send, 1676 ms to get response, and 1705 ms overall
17-03-18 03:57:51.234 -07 000000579 INF: Y Motor: Position error before settling = 2 encoder counts (0.001 mm)
17-03-18 03:57:51.234 -07 000000579 INF: Y Motor: To move from 75.384 to 59.913 (-15.471 mm) should take 24754 steps, but required 24782 steps (15.489 mm). Slippage = 0.018 mm (0.00%).
17-03-18 03:57:51.234 -07 000000579 INF: Y Motor: FPGA move command 'YMVTO 122701' took 1706 ms, distance = 15.471 mm, average velocity = 9.069 mm/sec
17-03-18 03:57:51.624 -07 000000480 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 03:57:51.624 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 118. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1701, R2=1769, Total=3470. Warn if over 250 bubbles per interval.
17-03-18 03:57:52.844 -07 000000480 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 119, FrontChillerTemperature: 4.016692,
17-03-18 03:57:54.084 -07 000000579 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:57:54.084 -07 000000462 INF: FPGA: Recv YRDPOS 122696
17-03-18 03:57:54.094 -07 000000579 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:57:54.094 -07 000000579 INF: Y Motor: Encoder = 122696 = motor step 95856.3 = 59.9102 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:57:54.114 -07 000000579 INF: Y Motor: After move to 59.912609, error = -0.002453, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 03:57:54.124 -07 000000579 INF: Y Motor: Position error after settling = -5 encoder counts (-0.002 mm), Delta during settling = -7 counts (-0.003 mm)
17-03-18 03:57:54.124 -07 000000579 INF: Y Motor: Moved to 59.9102 after 4599 ms
17-03-18 03:57:54.124 -07 000000618 INF: Z Motor: EndOfMoveAbsStepped: target = -0.178640 mm (DAC = 39024)
17-03-18 03:57:54.124 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:57:54.124 -07 000000591 INF: FPGA: Recv ZSGSRD 37105
17-03-18 03:57:54.134 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 03:57:54.134 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:57:54.134 -07 000000579 INF: FPGA: Recv ZSGSRD 37101
17-03-18 03:57:54.144 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:57:54.144 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:57:54.144 -07 000000512 INF: FPGA: Recv ZSGSRD 37099
17-03-18 03:57:54.154 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 03:57:54.154 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:57:54.154 -07 000000480 INF: FPGA: Recv ZSGSRD 37100
17-03-18 03:57:54.164 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:57:54.164 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:57:54.164 -07 000000512 INF: FPGA: Recv ZSGSRD 37100
17-03-18 03:57:54.174 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:57:54.174 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:57:54.174 -07 000000012 INF: FPGA: Recv ZSGSRD 37094
17-03-18 03:57:54.184 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:57:54.184 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:57:54.184 -07 000000480 INF: FPGA: Recv ZSGSRD 37099
17-03-18 03:57:54.194 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:57:54.194 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:57:54.194 -07 000000012 INF: FPGA: Recv ZSGSRD 37097
17-03-18 03:57:54.204 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:57:54.204 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:57:54.204 -07 000000502 INF: FPGA: Recv ZSGSRD 37098
17-03-18 03:57:54.214 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:57:54.214 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:57:54.214 -07 000000512 INF: FPGA: Recv ZSGSRD 37103
17-03-18 03:57:54.224 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:57:54.224 -07 000000618 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:57:54.224 -07 000000462 INF: FPGA: Recv ZPIEZORD 33271
17-03-18 03:57:54.234 -07 000000618 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:57:54.234 -07 000000618 INF: Z Motor: Piezo is near 51.1 V (nominally 0 to 100 V), expect near 59.5 V, since DAC is at 5.955 V. Piezo Error = -8.5 V.
17-03-18 03:57:54.234 -07 000000618 INF: Z Motor: ReadAdcAverage: Commanded Z = -178.6 um, Read 10 ADC samples: Avg = 37100 (-177.8 uncal um), Error = 0.9 uncal um, Median = 37100 (-177.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 37094 (-177.7 uncal um), Max = 37105 (-177.8 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 03:57:54.234 -07 000000618 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37100, posNoise = 5, negNoise = 6
17-03-18 03:57:54.234 -07 000000618 INF: Z Motor: After move to -0.178640, error = -0.000021, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:57:54.234 -07 000000618 INF: Z Motor: Settle wait time = 4601 ms, measure time = 107 ms (allowed 150 ms), total time = 4708 ms
17-03-18 03:57:54.234 -07 000000618 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-18 03:57:54.284 -07 000000618 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 4761 ms
17-03-18 03:57:54.284 -07 000000618 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 03:57:54.284 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:57:54.284 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:57:54.284 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:57:54.284 -07 000000012 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:57:54.284 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 03:57:54.284 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:57:54.284 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 03:57:54.284 -07 000000462 INF: Camera: sBCa_SetPowerMode(785074288, 1) start.
17-03-18 03:57:54.314 -07 000000462 INF: Camera: sBCa_SetPowerMode(785074288, 1) end. Duration was 24 ms.
17-03-18 03:57:54.314 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 03:57:54.314 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms.
17-03-18 03:57:54.314 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 03:57:54.334 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-18 03:57:54.334 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 44 ms.
17-03-18 03:57:54.334 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 03:57:54.374 -07 000000480 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 03:57:54.674 -07 000000502 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 03:57:54.674 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 03:57:54.674 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 03:57:54.684 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 03:57:54.714 -07 000000480 INF: FPGA: Recv @CAMSNAP 380
17-03-18 03:57:54.714 -07 000000012 INF: FPGA: Recv CAMSNAP
17-03-18 03:57:54.714 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 378 ms to get response, and 384 ms overall
17-03-18 03:57:54.804 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 127 ms.
17-03-18 03:57:54.804 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:57:54.804 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 03:57:54.804 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-18 03:57:54.914 -07 000000618 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 03:57:54.914 -07 000000502 INF: Image SNR check: start
17-03-18 03:57:54.914 -07 000000579 INF: FPGA: Recv FOCMRRCUR 
17-03-18 03:57:54.924 -07 000000618 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 03:57:54.924 -07 000000618 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 03:57:54.924 -07 000000502 INF: Image SNR check: pass  [peak (Max-Min)=137.88]
17-03-18 03:57:54.924 -07 000000502 INF: Autofocus start
17-03-18 03:57:54.924 -07 000000502 INF: MeasureProfile start
17-03-18 03:57:54.934 -07 000000502 INF: MeasureProfile done
17-03-18 03:57:54.934 -07 000000502 INF: X=-16  Z correction [um]=-0.1496812
17-03-18 03:57:54.934 -07 000000502 INF: Autofocus finished
17-03-18 03:57:55.124 -07 000000590 INF: FPGA: Recv FOCMRRIMG
17-03-18 03:57:55.124 -07 000000618 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 03:57:55.124 -07 000000610 INF: ------------ Scan Snapping tile 1 at Y-position 59.91015625, Z-position -0.178661622470466. ----------
17-03-18 03:57:55.124 -07 000000610 INF: Cycle	119	Tile	1	Exposure Settings		A	413	G	199	T	199	C	413
17-03-18 03:57:55.134 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37503, sync = True, waitForSettling = True)
17-03-18 03:57:55.134 -07 000000610 INF: Z Motor: Moving to -0.171678 mm, started at -0.178662 mm, distance = 6.98 um
17-03-18 03:57:55.134 -07 000000610 INF: FPGA: Xmit ZDACW 37503\n [Z Motor]
17-03-18 03:57:55.134 -07 000000462 INF: FPGA: Recv ZDACW
17-03-18 03:57:55.144 -07 000000610 INF: FPGA: 'ZDACW 37503' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 03:57:55.144 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:57:55.144 -07 000000590 INF: FPGA: Recv ZDACR 37503
17-03-18 03:57:55.154 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:57:55.154 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 03:57:55.304 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:57:55.304 -07 000000590 INF: FPGA: Recv ZSGSRD 36019
17-03-18 03:57:55.314 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:57:55.314 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:57:55.314 -07 000000591 INF: FPGA: Recv ZSGSRD 36017
17-03-18 03:57:55.324 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:57:55.324 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:57:55.324 -07 000000618 INF: FPGA: Recv ZSGSRD 36015
17-03-18 03:57:55.334 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:57:55.334 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:57:55.334 -07 000000480 INF: FPGA: Recv ZSGSRD 36015
17-03-18 03:57:55.344 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:57:55.344 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:57:55.344 -07 000000618 INF: FPGA: Recv ZSGSRD 36014
17-03-18 03:57:55.354 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:57:55.354 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:57:55.354 -07 000000480 INF: FPGA: Recv ZSGSRD 36018
17-03-18 03:57:55.364 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:57:55.364 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:57:55.364 -07 000000618 INF: FPGA: Recv ZSGSRD 36012
17-03-18 03:57:55.374 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:57:55.374 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:57:55.374 -07 000000512 INF: FPGA: Recv ZSGSRD 36012
17-03-18 03:57:55.384 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:57:55.384 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:57:55.384 -07 000000480 INF: FPGA: Recv ZSGSRD 36016
17-03-18 03:57:55.394 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:57:55.394 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:57:55.394 -07 000000462 INF: FPGA: Recv ZSGSRD 36018
17-03-18 03:57:55.404 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:57:55.404 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:57:55.404 -07 000000480 INF: FPGA: Recv ZPIEZORD 31871
17-03-18 03:57:55.414 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:57:55.414 -07 000000610 INF: Z Motor: Piezo is near 48.1 V (nominally 0 to 100 V), expect near 57.2 V, since DAC is at 5.723 V. Piezo Error = -9.1 V.
17-03-18 03:57:55.414 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.7 um, Read 10 ADC samples: Avg = 36016 (-170.8 uncal um), Error = 0.9 uncal um, Median = 36016 (-170.8 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 36012 (-170.8 uncal um), Max = 36019 (-170.8 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 03:57:55.414 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36016, posNoise = 3, negNoise = 4
17-03-18 03:57:55.414 -07 000000610 INF: Z Motor: After move to -0.171678, error = -0.000020, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:57:55.414 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 03:57:55.414 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:57:55.414 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:57:55.414 -07 000000579 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:57:55.414 -07 000000591 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:57:55.414 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 03:57:55.414 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:57:55.414 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 03:57:55.414 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 03:57:55.414 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 03:57:55.414 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 03:57:55.414 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 03:57:55.414 -07 000000502 INF: Camera: sBCa_SetPowerMode(785074704, 1) start.
17-03-18 03:57:55.424 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 03:57:55.424 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 03:57:55.434 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 03:57:55.434 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 19 ms.
17-03-18 03:57:55.444 -07 000000502 INF: Camera: sBCa_SetPowerMode(785074704, 1) end. Duration was 22 ms.
17-03-18 03:57:55.444 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 03:57:55.444 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-18 03:57:55.444 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 03:57:55.464 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 03:57:55.464 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 43 ms.
17-03-18 03:57:55.464 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 413 413 199 199 37680 150\n [Camera]
17-03-18 03:57:55.664 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 03:57:56.074 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 607
17-03-18 03:57:56.074 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 607
17-03-18 03:57:56.074 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:57:56.084 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 607
17-03-18 03:57:56.084 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 607
17-03-18 03:57:56.084 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:57:56.204 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:57:56.204 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:57:56.204 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) start.
17-03-18 03:57:56.204 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) start.
17-03-18 03:57:56.264 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37680 798
17-03-18 03:57:56.414 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning grn on 948
17-03-18 03:57:56.604 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) end. Duration was 398 ms.
17-03-18 03:57:56.604 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 03:57:56.604 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:57:56.604 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) end. Duration was 398 ms.
17-03-18 03:57:56.604 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 03:57:56.604 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:57:56.604 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 03:57:56.614 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 03:57:56.614 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 532 ms.
17-03-18 03:57:56.614 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 535 ms.
17-03-18 03:57:56.614 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1147
17-03-18 03:57:56.614 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1147
17-03-18 03:57:56.614 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:57:56.624 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1147
17-03-18 03:57:56.624 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1147
17-03-18 03:57:56.624 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:57:56.624 -07 000000579 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 03:57:56.624 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 118. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1701, R2=1769, Total=3470. Warn if over 250 bubbles per interval.
17-03-18 03:57:56.624 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:57:56.624 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-18 03:57:56.634 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:57:56.634 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) start.
17-03-18 03:57:56.804 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP 1340
17-03-18 03:57:56.804 -07 000000591 INF: FPGA: Recv CAMDBLSNAP
17-03-18 03:57:56.804 -07 000000610 INF: FPGA: 'CAMDBLSNAP 413 413 199 199 37680 150' command took 2 ms to send, 1339 ms to get response, and 1347 ms overall
17-03-18 03:57:56.814 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 03:57:56.814 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 2 at Y-position 59.91015625, Z-Position -0.171697776508798. ------
17-03-18 03:57:56.814 -07 000000462 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 03:57:56.814 -07 000000618 INF: Y Motor: MoveYZ optimized starting. Moving Y to 60.7426 mm, moving Z to -0.17793 mm
17-03-18 03:57:56.814 -07 000000618 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 03:57:56.814 -07 000000591 INF: FPGA: Recv FOCMRRCUR 
17-03-18 03:57:56.824 -07 000000462 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 03:57:56.824 -07 000000462 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 03:57:56.824 -07 000000480 INF: Y Motor: Entering MoveAbsStepped (target = 97188 steps, sync = True, waitForSettling = True)
17-03-18 03:57:56.824 -07 000000480 INF: Y Motor: Moving to 60.7426 mm, started at 59.9102 mm, delta = 0.8325 mm
17-03-18 03:57:56.824 -07 000000579 INF: Z Motor: Entering MoveAbsStepped (DAC = 38868, sync = True, waitForSettling = False)
17-03-18 03:57:56.824 -07 000000579 INF: Z Motor: Moving to -0.177926 mm, started at -0.171698 mm, distance = -6.23 um
17-03-18 03:57:56.834 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:57:56.834 -07 000000591 INF: FPGA: Recv YRDPOS 122696
17-03-18 03:57:56.844 -07 000000579 INF: FPGA: Xmit ZDACW 38868\n [Z Motor]
17-03-18 03:57:56.844 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-18 03:57:56.844 -07 000000480 INF: Y Motor: Encoder = 122696 = motor step 95856.3 = 59.9102 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:57:56.844 -07 000000480 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 03:57:56.844 -07 000000480 INF: Y Motor: Moving 1332 steps2
17-03-18 03:57:56.844 -07 000000591 INF: FPGA: Recv ZDACW
17-03-18 03:57:56.854 -07 000000579 INF: FPGA: 'ZDACW 38868' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-18 03:57:56.854 -07 000000579 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:57:56.854 -07 000000591 INF: FPGA: Recv ZDACR 38868
17-03-18 03:57:56.864 -07 000000579 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:57:56.864 -07 000000579 INF: Z Motor: MoveAbsStepped took 38 ms (did NOT wait for settling yet))
17-03-18 03:57:56.864 -07 000000480 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 03:57:57.024 -07 000000579 INF: FPGA: Recv FOCMRRFOC
17-03-18 03:57:57.024 -07 000000462 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 194 ms to get response, and 202 ms overall
17-03-18 03:57:57.024 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 396 ms.
17-03-18 03:57:57.024 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 03:57:57.024 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:57:57.024 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) end. Duration was 395 ms.
17-03-18 03:57:57.024 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 03:57:57.024 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:57:57.034 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 03:57:57.034 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-18 03:57:57.034 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 03:57:57.034 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 416 ms.
17-03-18 03:57:57.244 -07 000000579 INF: FPGA: Recv YMVTILE
17-03-18 03:57:57.244 -07 000000480 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 371 ms to get response, and 400 ms overall
17-03-18 03:57:57.274 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:57:57.284 -07 000000512 INF: FPGA: Recv YRDPOS 124380
17-03-18 03:57:57.284 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 03:57:57.284 -07 000000480 INF: Y Motor: Encoder = 124380 = motor step 97171.9 = 60.7324 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:57:57.284 -07 000000480 INF: Y Motor: Position error before settling (table move) = -21 encoder counts (-0.010 mm)
17-03-18 03:57:57.284 -07 000000480 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 400 ms, distance = 0.832 mm, average velocity = 2.081 mm/sec
17-03-18 03:57:58.204 -07 000000479 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 119, FrontChillerTemperature: 4.027603,
17-03-18 03:57:58.234 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:57:58.234 -07 000000424 INF: FPGA: Recv YRDPOS 124380
17-03-18 03:57:58.244 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:57:58.244 -07 000000480 INF: Y Motor: Encoder = 124380 = motor step 97171.9 = 60.7324 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:57:58.274 -07 000000480 INF: Y Motor: After move to 60.742607, error = -0.010185, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 03:57:58.274 -07 000000480 INF: Y Motor: Position error after settling (table move) = -21 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 03:57:58.274 -07 000000480 INF: Y Motor: Moved to 60.7324 after 1450 ms (table move)
17-03-18 03:57:58.274 -07 000000618 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177926 mm (DAC = 38868)
17-03-18 03:57:58.274 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:57:58.274 -07 000000480 INF: FPGA: Recv ZSGSRD 36985
17-03-18 03:57:58.284 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 03:57:58.284 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:57:58.284 -07 000000512 INF: FPGA: Recv ZSGSRD 36985
17-03-18 03:57:58.294 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:57:58.294 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:57:58.294 -07 000000512 INF: FPGA: Recv ZSGSRD 36988
17-03-18 03:57:58.304 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:57:58.304 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:57:58.304 -07 000000590 INF: FPGA: Recv ZSGSRD 36993
17-03-18 03:57:58.314 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:57:58.314 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:57:58.314 -07 000000591 INF: FPGA: Recv ZSGSRD 36991
17-03-18 03:57:58.324 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:57:58.324 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:57:58.344 -07 000000591 INF: FPGA: Recv ZSGSRD 36983
17-03-18 03:57:58.344 -07 000000618 INF: FPGA: 'ZSGSRD' command took 10 ms to send, 2 ms to get response, and 15 ms overall
17-03-18 03:57:58.344 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:57:58.344 -07 000000591 INF: FPGA: Recv ZSGSRD 36995
17-03-18 03:57:58.354 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 03:57:58.354 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:57:58.354 -07 000000591 INF: FPGA: Recv ZSGSRD 36986
17-03-18 03:57:58.364 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:57:58.364 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:57:58.364 -07 000000591 INF: FPGA: Recv ZSGSRD 36988
17-03-18 03:57:58.374 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:57:58.374 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:57:58.374 -07 000000591 INF: FPGA: Recv ZSGSRD 36986
17-03-18 03:57:58.384 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:57:58.384 -07 000000618 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:57:58.384 -07 000000479 INF: FPGA: Recv ZPIEZORD 33149
17-03-18 03:57:58.394 -07 000000618 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:57:58.394 -07 000000618 INF: Z Motor: Piezo is near 50.8 V (nominally 0 to 100 V), expect near 59.3 V, since DAC is at 5.931 V. Piezo Error = -8.5 V.
17-03-18 03:57:58.394 -07 000000618 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.9 um, Read 10 ADC samples: Avg = 36988 (-177.0 uncal um), Error = 0.9 uncal um, Median = 36987 (-177.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 36983 (-177.0 uncal um), Max = 36995 (-177.1 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 03:57:58.394 -07 000000618 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36988, posNoise = 7, negNoise = 5
17-03-18 03:57:58.394 -07 000000618 INF: Z Motor: After move to -0.177926, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:57:58.394 -07 000000618 INF: Z Motor: Settle wait time = 1453 ms, measure time = 116 ms (allowed 150 ms), total time = 1569 ms
17-03-18 03:57:58.394 -07 000000618 INF: Z Motor: Waiting extra 34 ms after reading position to reach expected total of 150 ms
17-03-18 03:57:58.434 -07 000000618 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1614 ms
17-03-18 03:57:58.434 -07 000000618 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 03:57:58.434 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:57:58.434 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:57:58.434 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:57:58.434 -07 000000479 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:57:58.434 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 03:57:58.434 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:57:58.434 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 03:57:58.434 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 03:57:58.444 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 03:57:58.444 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 03:57:58.454 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 9 ms.
17-03-18 03:57:58.454 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 14 ms.
17-03-18 03:57:58.464 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 03:57:58.504 -07 000000591 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 03:57:58.804 -07 000000590 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 03:57:58.804 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 03:57:58.804 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 03:57:58.804 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 03:57:58.844 -07 000000561 INF: FPGA: Recv @CAMSNAP 380
17-03-18 03:57:58.844 -07 000000591 INF: FPGA: Recv CAMSNAP
17-03-18 03:57:58.844 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 375 ms to get response, and 390 ms overall
17-03-18 03:57:58.934 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 125 ms.
17-03-18 03:57:58.934 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:57:58.934 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 03:57:58.934 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms.
17-03-18 03:57:58.944 -07 000000579 INF: Autofocus start
17-03-18 03:57:58.944 -07 000000579 INF: MeasureProfile start
17-03-18 03:57:58.944 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 03:57:58.944 -07 000000462 INF: FPGA: Recv FOCMRRCUR 
17-03-18 03:57:58.954 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 03:57:58.954 -07 000000424 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 03:57:58.954 -07 000000579 INF: MeasureProfile done
17-03-18 03:57:58.954 -07 000000579 INF: X=16  Z correction [um]=0.01042744
17-03-18 03:57:58.954 -07 000000579 INF: Autofocus finished
17-03-18 03:57:59.154 -07 000000618 INF: FPGA: Recv FOCMRRIMG
17-03-18 03:57:59.154 -07 000000424 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 03:57:59.154 -07 000000610 INF: ------------ Scan Snapping tile 2 at Y-position 60.732421875, Z-position -0.177942110710589. ----------
17-03-18 03:57:59.154 -07 000000610 INF: Cycle	119	Tile	2	Exposure Settings		A	413	G	199	T	199	C	413
17-03-18 03:57:59.164 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37383, sync = True, waitForSettling = True)
17-03-18 03:57:59.164 -07 000000610 INF: Z Motor: Moving to -0.171128 mm, started at -0.177942 mm, distance = 6.81 um
17-03-18 03:57:59.164 -07 000000610 INF: FPGA: Xmit ZDACW 37383\n [Z Motor]
17-03-18 03:57:59.164 -07 000000591 INF: FPGA: Recv ZDACW
17-03-18 03:57:59.174 -07 000000610 INF: FPGA: 'ZDACW 37383' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:57:59.174 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:57:59.174 -07 000000618 INF: FPGA: Recv ZDACR 37383
17-03-18 03:57:59.184 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:57:59.184 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 03:57:59.334 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:57:59.334 -07 000000480 INF: FPGA: Recv ZSGSRD 35931
17-03-18 03:57:59.344 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:57:59.344 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:57:59.344 -07 000000462 INF: FPGA: Recv ZSGSRD 35931
17-03-18 03:57:59.354 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:57:59.354 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:57:59.354 -07 000000480 INF: FPGA: Recv ZSGSRD 35929
17-03-18 03:57:59.364 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:57:59.364 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:57:59.364 -07 000000479 INF: FPGA: Recv ZSGSRD 35923
17-03-18 03:57:59.374 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:57:59.374 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:57:59.374 -07 000000462 INF: FPGA: Recv ZSGSRD 35922
17-03-18 03:57:59.384 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:57:59.384 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:57:59.384 -07 000000618 INF: FPGA: Recv ZSGSRD 35921
17-03-18 03:57:59.394 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:57:59.394 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:57:59.394 -07 000000480 INF: FPGA: Recv ZSGSRD 35934
17-03-18 03:57:59.404 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:57:59.404 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:57:59.404 -07 000000618 INF: FPGA: Recv ZSGSRD 35932
17-03-18 03:57:59.414 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:57:59.414 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:57:59.414 -07 000000480 INF: FPGA: Recv ZSGSRD 35924
17-03-18 03:57:59.424 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:57:59.424 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:57:59.424 -07 000000618 INF: FPGA: Recv ZSGSRD 35931
17-03-18 03:57:59.434 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:57:59.434 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:57:59.434 -07 000000480 INF: FPGA: Recv ZPIEZORD 31712
17-03-18 03:57:59.444 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:57:59.444 -07 000000610 INF: Z Motor: Piezo is near 47.7 V (nominally 0 to 100 V), expect near 57.0 V, since DAC is at 5.704 V. Piezo Error = -9.3 V.
17-03-18 03:57:59.444 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.1 um, Read 10 ADC samples: Avg = 35928 (-170.3 uncal um), Error = 0.9 uncal um, Median = 35930 (-170.3 uncal um), StdDev = 5 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 35921 (-170.2 uncal um), Max = 35934 (-170.3 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 03:57:59.444 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35928, posNoise = 6, negNoise = 7
17-03-18 03:57:59.444 -07 000000610 INF: Z Motor: After move to -0.171128, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:57:59.444 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-18 03:57:59.444 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:57:59.444 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:57:59.444 -07 000000012 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:57:59.444 -07 000000579 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:57:59.444 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 03:57:59.444 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:57:59.444 -07 000000591 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 03:57:59.444 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 03:57:59.444 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 03:57:59.444 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 03:57:59.444 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 03:57:59.444 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 03:57:59.444 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 03:57:59.444 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 03:57:59.454 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 5 ms.
17-03-18 03:57:59.454 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 03:57:59.464 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 13 ms.
17-03-18 03:57:59.464 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 18 ms.
17-03-18 03:57:59.464 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 13 ms.
17-03-18 03:57:59.464 -07 000000591 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 03:57:59.464 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 413 413 199 199 37560 150\n [Camera]
17-03-18 03:57:59.674 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 03:58:00.084 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 605
17-03-18 03:58:00.084 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 605
17-03-18 03:58:00.084 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:58:00.084 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:58:00.084 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 644204472, 0x0, 391868352) start.
17-03-18 03:58:00.084 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 605
17-03-18 03:58:00.084 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 605
17-03-18 03:58:00.084 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:58:00.084 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:58:00.084 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2620985504, 0x0, 418435064) start.
17-03-18 03:58:00.274 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37560 800
17-03-18 03:58:00.424 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning grn on 948
17-03-18 03:58:00.484 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 644204472, 0x0, 391868352) end. Duration was 399 ms.
17-03-18 03:58:00.484 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 03:58:00.484 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:58:00.484 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2620985504, 0x0, 418435064) end. Duration was 399 ms.
17-03-18 03:58:00.484 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 03:58:00.484 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:58:00.484 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:58:00.484 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 03:58:00.494 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:58:00.504 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-18 03:58:00.624 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1147
17-03-18 03:58:00.624 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1147
17-03-18 03:58:00.624 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:58:00.744 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1147
17-03-18 03:58:00.744 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1147
17-03-18 03:58:00.744 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:58:00.754 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:58:00.754 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:58:00.754 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) start.
17-03-18 03:58:00.754 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-18 03:58:00.814 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP 1339
17-03-18 03:58:00.814 -07 000000618 INF: FPGA: Recv CAMDBLSNAP
17-03-18 03:58:00.814 -07 000000610 INF: FPGA: 'CAMDBLSNAP 413 413 199 199 37560 150' command took 2 ms to send, 1338 ms to get response, and 1349 ms overall
17-03-18 03:58:00.824 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 03:58:00.824 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 3 at Y-position 60.732421875, Z-Position -0.171132445840323. ------
17-03-18 03:58:00.824 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 03:58:00.824 -07 000000462 INF: Y Motor: MoveYZ optimized starting. Moving Y to 61.5726 mm, moving Z to -0.17788 mm
17-03-18 03:58:00.824 -07 000000462 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 03:58:00.824 -07 000000590 INF: Y Motor: Entering MoveAbsStepped (target = 98516 steps, sync = True, waitForSettling = True)
17-03-18 03:58:00.824 -07 000000590 INF: Y Motor: Moving to 61.5726 mm, started at 60.7324 mm, delta = 0.8402 mm
17-03-18 03:58:00.824 -07 000000591 INF: FPGA: Recv FOCMRRCUR 
17-03-18 03:58:00.824 -07 000000012 INF: Z Motor: Entering MoveAbsStepped (DAC = 38858, sync = True, waitForSettling = False)
17-03-18 03:58:00.824 -07 000000012 INF: Z Motor: Moving to -0.177881 mm, started at -0.171132 mm, distance = -6.75 um
17-03-18 03:58:00.834 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 03:58:00.834 -07 000000012 INF: FPGA: Xmit ZDACW 38858\n [Z Motor]
17-03-18 03:58:00.834 -07 000000424 INF: FPGA: Recv ZDACW
17-03-18 03:58:00.844 -07 000000590 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:58:00.844 -07 000000012 INF: FPGA: 'ZDACW 38858' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-18 03:58:00.844 -07 000000561 INF: FPGA: Recv YRDPOS 124381
17-03-18 03:58:00.854 -07 000000590 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-18 03:58:00.854 -07 000000590 INF: Y Motor: Encoder = 124381 = motor step 97172.7 = 60.7329 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:58:00.854 -07 000000502 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 03:58:00.854 -07 000000590 INF: Y Motor: Last commanded position = 60.7426 mm (97188.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 03:58:00.854 -07 000000590 INF: Y Motor: Moving 1344 steps-21
17-03-18 03:58:00.864 -07 000000012 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:58:00.864 -07 000000618 INF: FPGA: Recv ZDACR 38858
17-03-18 03:58:00.874 -07 000000590 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 03:58:00.874 -07 000000012 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 03:58:00.874 -07 000000012 INF: Z Motor: MoveAbsStepped took 42 ms (did NOT wait for settling yet))
17-03-18 03:58:01.054 -07 000000561 INF: FPGA: Recv FOCMRRFOC
17-03-18 03:58:01.054 -07 000000502 INF: FPGA: 'FOCMRRFOC' command took 3 ms to send, 195 ms to get response, and 225 ms overall
17-03-18 03:58:01.154 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 397 ms.
17-03-18 03:58:01.154 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 03:58:01.154 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:58:01.154 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) end. Duration was 397 ms.
17-03-18 03:58:01.154 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 03:58:01.154 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:58:01.154 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 03:58:01.154 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 528 ms.
17-03-18 03:58:01.154 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 03:58:01.164 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 416 ms.
17-03-18 03:58:01.244 -07 000000502 INF: FPGA: Recv YMVTILE
17-03-18 03:58:01.244 -07 000000590 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 392 ms overall
17-03-18 03:58:01.294 -07 000000590 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:58:01.294 -07 000000502 INF: FPGA: Recv YRDPOS 126081
17-03-18 03:58:01.304 -07 000000590 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 03:58:01.304 -07 000000590 INF: Y Motor: Encoder = 126081 = motor step 98500.8 = 61.5630 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:58:01.304 -07 000000590 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-18 03:58:01.304 -07 000000590 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 392 ms, distance = 0.840 mm, average velocity = 2.143 mm/sec
17-03-18 03:58:01.624 -07 000000561 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 03:58:01.624 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 118. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1701, R2=1769, Total=3470. Warn if over 250 bubbles per interval.
17-03-18 03:58:02.254 -07 000000590 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:58:02.254 -07 000000012 INF: FPGA: Recv YRDPOS 126082
17-03-18 03:58:02.264 -07 000000590 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:02.264 -07 000000590 INF: Y Motor: Encoder = 126082 = motor step 98501.6 = 61.5635 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:58:02.284 -07 000000590 INF: Y Motor: After move to 61.572609, error = -0.009132, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 03:58:02.284 -07 000000590 INF: Y Motor: Position error after settling (table move) = -19 encoder counts (-0.009 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 03:58:02.284 -07 000000590 INF: Y Motor: Moved to 61.5635 after 1462 ms (table move)
17-03-18 03:58:02.294 -07 000000462 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177881 mm (DAC = 38858)
17-03-18 03:58:02.294 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:02.294 -07 000000502 INF: FPGA: Recv ZSGSRD 36991
17-03-18 03:58:02.304 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 03:58:02.304 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:02.304 -07 000000480 INF: FPGA: Recv ZSGSRD 36983
17-03-18 03:58:02.314 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:02.314 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:02.314 -07 000000561 INF: FPGA: Recv ZSGSRD 36984
17-03-18 03:58:02.324 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:02.324 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:02.324 -07 000000480 INF: FPGA: Recv ZSGSRD 36983
17-03-18 03:58:02.334 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:02.334 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:02.334 -07 000000618 INF: FPGA: Recv ZSGSRD 36983
17-03-18 03:58:02.344 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:02.344 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:02.344 -07 000000579 INF: FPGA: Recv ZSGSRD 36982
17-03-18 03:58:02.354 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:02.354 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:02.354 -07 000000618 INF: FPGA: Recv ZSGSRD 36978
17-03-18 03:58:02.364 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:02.364 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:02.364 -07 000000480 INF: FPGA: Recv ZSGSRD 36979
17-03-18 03:58:02.374 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:02.374 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:02.374 -07 000000579 INF: FPGA: Recv ZSGSRD 36978
17-03-18 03:58:02.384 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 03:58:02.384 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:02.384 -07 000000012 INF: FPGA: Recv ZSGSRD 36983
17-03-18 03:58:02.394 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:02.394 -07 000000462 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:58:02.394 -07 000000579 INF: FPGA: Recv ZPIEZORD 33165
17-03-18 03:58:02.404 -07 000000462 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:02.404 -07 000000462 INF: Z Motor: Piezo is near 50.8 V (nominally 0 to 100 V), expect near 59.3 V, since DAC is at 5.929 V. Piezo Error = -8.4 V.
17-03-18 03:58:02.404 -07 000000462 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.9 um, Read 10 ADC samples: Avg = 36982 (-177.0 uncal um), Error = 0.9 uncal um, Median = 36983 (-177.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 36978 (-177.0 uncal um), Max = 36991 (-177.1 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 03:58:02.404 -07 000000462 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36982, posNoise = 9, negNoise = 4
17-03-18 03:58:02.404 -07 000000462 INF: Z Motor: After move to -0.177881, error = -0.000023, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:58:02.404 -07 000000462 INF: Z Motor: Settle wait time = 1464 ms, measure time = 108 ms (allowed 150 ms), total time = 1572 ms
17-03-18 03:58:02.404 -07 000000462 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-18 03:58:02.454 -07 000000462 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1625 ms
17-03-18 03:58:02.454 -07 000000462 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 03:58:02.454 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:58:02.454 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:58:02.454 -07 000000012 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:58:02.454 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:58:02.454 -07 000000579 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 03:58:02.454 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:58:02.454 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 03:58:02.454 -07 000000579 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 03:58:02.464 -07 000000579 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 03:58:02.464 -07 000000579 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 03:58:02.474 -07 000000579 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-18 03:58:02.474 -07 000000579 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms.
17-03-18 03:58:02.474 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 03:58:02.524 -07 000000480 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 03:58:02.824 -07 000000590 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 03:58:02.824 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 03:58:02.824 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 03:58:02.824 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 03:58:02.864 -07 000000579 INF: FPGA: Recv @CAMSNAP 380
17-03-18 03:58:02.864 -07 000000502 INF: FPGA: Recv CAMSNAP
17-03-18 03:58:02.864 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 382 ms to get response, and 385 ms overall
17-03-18 03:58:02.954 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 125 ms.
17-03-18 03:58:02.954 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:58:02.954 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 03:58:02.954 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms.
17-03-18 03:58:02.964 -07 000000561 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 03:58:02.964 -07 000000579 INF: Autofocus start
17-03-18 03:58:02.964 -07 000000579 INF: MeasureProfile start
17-03-18 03:58:02.964 -07 000000480 INF: FPGA: Recv FOCMRRCUR 
17-03-18 03:58:02.974 -07 000000561 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 03:58:02.974 -07 000000561 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 03:58:02.974 -07 000000579 INF: MeasureProfile done
17-03-18 03:58:02.974 -07 000000579 INF: X=0  Z correction [um]=-0.0713522
17-03-18 03:58:02.974 -07 000000579 INF: Autofocus finished
17-03-18 03:58:03.174 -07 000000618 INF: FPGA: Recv FOCMRRIMG
17-03-18 03:58:03.174 -07 000000561 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 197 ms to get response, and 205 ms overall
17-03-18 03:58:03.184 -07 000000610 INF: ------------ Scan Snapping tile 3 at Y-position 61.5634765625, Z-position -0.177903565437739. ----------
17-03-18 03:58:03.184 -07 000000610 INF: Cycle	119	Tile	3	Exposure Settings		A	413	G	199	T	199	C	413
17-03-18 03:58:03.184 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37355, sync = True, waitForSettling = True)
17-03-18 03:58:03.184 -07 000000610 INF: Z Motor: Moving to -0.171000 mm, started at -0.177904 mm, distance = 6.90 um
17-03-18 03:58:03.184 -07 000000610 INF: FPGA: Xmit ZDACW 37355\n [Z Motor]
17-03-18 03:58:03.184 -07 000000618 INF: FPGA: Recv ZDACW
17-03-18 03:58:03.194 -07 000000610 INF: FPGA: 'ZDACW 37355' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 03:58:03.194 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:58:03.194 -07 000000012 INF: FPGA: Recv ZDACR 37355
17-03-18 03:58:03.204 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:03.204 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 03:58:03.354 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:03.354 -07 000000012 INF: FPGA: Recv ZSGSRD 35913
17-03-18 03:58:03.364 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:03.364 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:03.364 -07 000000462 INF: FPGA: Recv ZSGSRD 35908
17-03-18 03:58:03.374 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:03.374 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:03.374 -07 000000590 INF: FPGA: Recv ZSGSRD 35909
17-03-18 03:58:03.384 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:03.384 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:03.384 -07 000000462 INF: FPGA: Recv ZSGSRD 35907
17-03-18 03:58:03.394 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:03.394 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:03.394 -07 000000012 INF: FPGA: Recv ZSGSRD 35910
17-03-18 03:58:03.404 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:03.404 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:03.404 -07 000000502 INF: FPGA: Recv ZSGSRD 35910
17-03-18 03:58:03.414 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:03.414 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:03.414 -07 000000590 INF: FPGA: Recv ZSGSRD 35906
17-03-18 03:58:03.424 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:03.424 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:03.424 -07 000000502 INF: FPGA: Recv ZSGSRD 35912
17-03-18 03:58:03.434 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:03.434 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:03.434 -07 000000480 INF: FPGA: Recv ZSGSRD 35909
17-03-18 03:58:03.444 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:03.444 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:03.444 -07 000000502 INF: FPGA: Recv ZSGSRD 35909
17-03-18 03:58:03.454 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:03.454 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:58:03.454 -07 000000012 INF: FPGA: Recv ZPIEZORD 31734
17-03-18 03:58:03.464 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:03.464 -07 000000610 INF: Z Motor: Piezo is near 47.8 V (nominally 0 to 100 V), expect near 57.0 V, since DAC is at 5.700 V. Piezo Error = -9.2 V.
17-03-18 03:58:03.464 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.0 um, Read 10 ADC samples: Avg = 35909 (-170.1 uncal um), Error = 0.9 uncal um, Median = 35909 (-170.1 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 35906 (-170.1 uncal um), Max = 35913 (-170.2 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 03:58:03.464 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35909, posNoise = 4, negNoise = 3
17-03-18 03:58:03.464 -07 000000610 INF: Z Motor: After move to -0.171000, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:58:03.464 -07 000000610 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-18 03:58:03.464 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:58:03.464 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:58:03.464 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:58:03.464 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:58:03.464 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 03:58:03.464 -07 000000012 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 03:58:03.464 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:58:03.464 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 03:58:03.464 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 03:58:03.464 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 03:58:03.464 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 03:58:03.464 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 03:58:03.464 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 03:58:03.474 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 03:58:03.474 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 03:58:03.474 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 03:58:03.474 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 03:58:03.474 -07 000000012 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 03:58:03.474 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 03:58:03.474 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 03:58:03.484 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 413 413 199 199 37532 150\n [Camera]
17-03-18 03:58:03.574 -07 000000502 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 119, FrontChillerTemperature: 4.011254,
17-03-18 03:58:03.684 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 03:58:04.094 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 605
17-03-18 03:58:04.094 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 605
17-03-18 03:58:04.094 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:58:04.094 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:58:04.094 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 644204472, 0x0, 391868352) start.
17-03-18 03:58:04.094 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 605
17-03-18 03:58:04.094 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 605
17-03-18 03:58:04.094 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:58:04.214 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:58:04.214 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-18 03:58:04.284 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37532 798
17-03-18 03:58:04.434 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP turning grn on 948
17-03-18 03:58:04.474 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 644204472, 0x0, 391868352) end. Duration was 378 ms.
17-03-18 03:58:04.474 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-18 03:58:04.474 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:58:04.474 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:58:04.474 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-18 03:58:04.584 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 368 ms.
17-03-18 03:58:04.584 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 369 ms.
17-03-18 03:58:04.584 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:58:04.594 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:58:04.594 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 498 ms.
17-03-18 03:58:04.634 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1147
17-03-18 03:58:04.634 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1147
17-03-18 03:58:04.634 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:58:04.634 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1147
17-03-18 03:58:04.634 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1147
17-03-18 03:58:04.644 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:58:04.644 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:58:04.644 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 03:58:04.644 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:58:04.644 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) start.
17-03-18 03:58:04.824 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP 1339
17-03-18 03:58:04.824 -07 000000480 INF: FPGA: Recv CAMDBLSNAP
17-03-18 03:58:04.824 -07 000000610 INF: FPGA: 'CAMDBLSNAP 413 413 199 199 37532 150' command took 2 ms to send, 1338 ms to get response, and 1346 ms overall
17-03-18 03:58:04.834 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 03:58:04.834 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 4 at Y-position 61.5634765625, Z-Position -0.171010385809629. ------
17-03-18 03:58:04.834 -07 000000561 INF: Y Motor: MoveYZ optimized starting. Moving Y to 62.4026 mm, moving Z to -0.17718 mm
17-03-18 03:58:04.834 -07 000000561 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 03:58:04.834 -07 000000012 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 03:58:04.834 -07 000000591 INF: FPGA: Recv FOCMRRCUR 
17-03-18 03:58:04.834 -07 000000479 INF: Y Motor: Entering MoveAbsStepped (target = 99844 steps, sync = True, waitForSettling = True)
17-03-18 03:58:04.834 -07 000000479 INF: Y Motor: Moving to 62.4026 mm, started at 61.5635 mm, delta = 0.8391 mm
17-03-18 03:58:04.834 -07 000000512 INF: Z Motor: Entering MoveAbsStepped (DAC = 38705, sync = True, waitForSettling = False)
17-03-18 03:58:04.834 -07 000000512 INF: Z Motor: Moving to -0.177180 mm, started at -0.171010 mm, distance = -6.17 um
17-03-18 03:58:04.844 -07 000000012 INF: FPGA: 'FOCMRRCUR 80' command took 2 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 03:58:04.844 -07 000000479 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:58:04.844 -07 000000579 INF: FPGA: Recv YRDPOS 126082
17-03-18 03:58:04.854 -07 000000512 INF: FPGA: Xmit ZDACW 38705\n [Z Motor]
17-03-18 03:58:04.854 -07 000000479 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-18 03:58:04.854 -07 000000479 INF: Y Motor: Encoder = 126082 = motor step 98501.6 = 61.5635 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:58:04.854 -07 000000479 INF: Y Motor: Last commanded position = 61.5726 mm (98516.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 03:58:04.854 -07 000000479 INF: Y Motor: Moving 1343 steps-20
17-03-18 03:58:04.854 -07 000000579 INF: FPGA: Recv ZDACW
17-03-18 03:58:04.864 -07 000000012 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 03:58:04.864 -07 000000512 INF: FPGA: 'ZDACW 38705' command took 0 ms to send, 0 ms to get response, and 20 ms overall
17-03-18 03:58:04.874 -07 000000479 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 03:58:04.884 -07 000000512 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:58:04.884 -07 000000462 INF: FPGA: Recv ZDACR 38705
17-03-18 03:58:04.894 -07 000000512 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 03:58:04.894 -07 000000512 INF: Z Motor: MoveAbsStepped took 51 ms (did NOT wait for settling yet))
17-03-18 03:58:05.014 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 378 ms.
17-03-18 03:58:05.014 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-18 03:58:05.014 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:58:05.024 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) end. Duration was 379 ms.
17-03-18 03:58:05.024 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-18 03:58:05.024 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:58:05.024 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:58:05.024 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:58:05.024 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-18 03:58:05.034 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-18 03:58:05.064 -07 000000502 INF: FPGA: Recv FOCMRRFOC
17-03-18 03:58:05.064 -07 000000012 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 03:58:05.244 -07 000000502 INF: FPGA: Recv YMVTILE
17-03-18 03:58:05.244 -07 000000479 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 03:58:05.294 -07 000000479 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:58:05.294 -07 000000424 INF: FPGA: Recv YRDPOS 127785
17-03-18 03:58:05.304 -07 000000479 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 03:58:05.304 -07 000000479 INF: Y Motor: Encoder = 127785 = motor step 99832.0 = 62.3950 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:58:05.304 -07 000000479 INF: Y Motor: Position error before settling (table move) = -16 encoder counts (-0.008 mm)
17-03-18 03:58:05.304 -07 000000479 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.839 mm, average velocity = 2.114 mm/sec
17-03-18 03:58:06.254 -07 000000479 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:58:06.254 -07 000000590 INF: FPGA: Recv YRDPOS 127785
17-03-18 03:58:06.264 -07 000000479 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:58:06.264 -07 000000479 INF: Y Motor: Encoder = 127785 = motor step 99832.0 = 62.3950 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:58:06.284 -07 000000479 INF: Y Motor: After move to 62.402607, error = -0.007587, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 03:58:06.284 -07 000000479 INF: Y Motor: Position error after settling (table move) = -16 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 03:58:06.284 -07 000000479 INF: Y Motor: Moved to 62.3950 after 1450 ms (table move)
17-03-18 03:58:06.294 -07 000000561 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177180 mm (DAC = 38705)
17-03-18 03:58:06.294 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:06.294 -07 000000479 INF: FPGA: Recv ZSGSRD 36875
17-03-18 03:58:06.304 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 03:58:06.304 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:06.304 -07 000000618 INF: FPGA: Recv ZSGSRD 36878
17-03-18 03:58:06.314 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:06.314 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:06.314 -07 000000502 INF: FPGA: Recv ZSGSRD 36875
17-03-18 03:58:06.324 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:06.324 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:06.324 -07 000000424 INF: FPGA: Recv ZSGSRD 36873
17-03-18 03:58:06.334 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:06.334 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:06.334 -07 000000424 INF: FPGA: Recv ZSGSRD 36876
17-03-18 03:58:06.344 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:06.344 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:06.344 -07 000000424 INF: FPGA: Recv ZSGSRD 36874
17-03-18 03:58:06.354 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:06.354 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:06.354 -07 000000591 INF: FPGA: Recv ZSGSRD 36867
17-03-18 03:58:06.364 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:06.364 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:06.364 -07 000000591 INF: FPGA: Recv ZSGSRD 36865
17-03-18 03:58:06.374 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:06.374 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:06.374 -07 000000424 INF: FPGA: Recv ZSGSRD 36872
17-03-18 03:58:06.384 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:06.384 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:06.384 -07 000000424 INF: FPGA: Recv ZSGSRD 36880
17-03-18 03:58:06.394 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:06.394 -07 000000561 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:58:06.394 -07 000000424 INF: FPGA: Recv ZPIEZORD 33043
17-03-18 03:58:06.404 -07 000000561 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:06.404 -07 000000561 INF: Z Motor: Piezo is near 50.6 V (nominally 0 to 100 V), expect near 59.1 V, since DAC is at 5.906 V. Piezo Error = -8.5 V.
17-03-18 03:58:06.404 -07 000000561 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.2 um, Read 10 ADC samples: Avg = 36874 (-176.3 uncal um), Error = 0.9 uncal um, Median = 36874 (-176.3 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 36865 (-176.3 uncal um), Max = 36880 (-176.4 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-18 03:58:06.404 -07 000000561 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36874, posNoise = 6, negNoise = 9
17-03-18 03:58:06.404 -07 000000561 INF: Z Motor: After move to -0.177180, error = -0.000030, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:58:06.404 -07 000000561 INF: Z Motor: Settle wait time = 1453 ms, measure time = 108 ms (allowed 150 ms), total time = 1561 ms
17-03-18 03:58:06.404 -07 000000561 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-18 03:58:06.454 -07 000000561 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1616 ms
17-03-18 03:58:06.454 -07 000000561 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 03:58:06.454 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:58:06.454 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:58:06.454 -07 000000579 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:58:06.454 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:58:06.454 -07 000000479 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 03:58:06.454 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:58:06.454 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 03:58:06.454 -07 000000479 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 03:58:06.454 -07 000000479 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 03:58:06.454 -07 000000479 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 03:58:06.464 -07 000000479 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 9 ms.
17-03-18 03:58:06.464 -07 000000479 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 14 ms.
17-03-18 03:58:06.474 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 03:58:06.524 -07 000000590 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 03:58:06.624 -07 000000479 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 03:58:06.624 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 118. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1701, R2=1769, Total=3470. Warn if over 250 bubbles per interval.
17-03-18 03:58:06.814 -07 000000512 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 03:58:06.814 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 03:58:06.824 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 03:58:06.824 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 03:58:06.854 -07 000000590 INF: FPGA: Recv @CAMSNAP 380
17-03-18 03:58:06.864 -07 000000479 INF: FPGA: Recv CAMSNAP
17-03-18 03:58:06.864 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 380 ms to get response, and 387 ms overall
17-03-18 03:58:06.944 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 126 ms.
17-03-18 03:58:06.944 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:58:06.944 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 03:58:06.944 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms.
17-03-18 03:58:06.964 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 03:58:06.964 -07 000000479 INF: Autofocus start
17-03-18 03:58:06.964 -07 000000479 INF: MeasureProfile start
17-03-18 03:58:06.964 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-18 03:58:06.974 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 03:58:06.974 -07 000000424 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 03:58:06.974 -07 000000479 INF: MeasureProfile done
17-03-18 03:58:06.974 -07 000000479 INF: X=32  Z correction [um]=0.09220707
17-03-18 03:58:06.974 -07 000000479 INF: Autofocus finished
17-03-18 03:58:07.174 -07 000000590 INF: FPGA: Recv FOCMRRIMG
17-03-18 03:58:07.174 -07 000000424 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 03:58:07.174 -07 000000610 INF: ------------ Scan Snapping tile 4 at Y-position 62.39501953125, Z-position -0.177209750526428. ----------
17-03-18 03:58:07.174 -07 000000610 INF: Cycle	119	Tile	4	Exposure Settings		A	413	G	199	T	199	C	413
17-03-18 03:58:07.184 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37237, sync = True, waitForSettling = True)
17-03-18 03:58:07.184 -07 000000610 INF: Z Motor: Moving to -0.170460 mm, started at -0.177210 mm, distance = 6.75 um
17-03-18 03:58:07.184 -07 000000610 INF: FPGA: Xmit ZDACW 37237\n [Z Motor]
17-03-18 03:58:07.184 -07 000000480 INF: FPGA: Recv ZDACW
17-03-18 03:58:07.194 -07 000000610 INF: FPGA: 'ZDACW 37237' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 03:58:07.194 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:58:07.194 -07 000000012 INF: FPGA: Recv ZDACR 37237
17-03-18 03:58:07.204 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:07.204 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 03:58:07.354 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:07.354 -07 000000512 INF: FPGA: Recv ZSGSRD 35826
17-03-18 03:58:07.364 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:58:07.364 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:07.364 -07 000000502 INF: FPGA: Recv ZSGSRD 35831
17-03-18 03:58:07.374 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:07.374 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:07.374 -07 000000480 INF: FPGA: Recv ZSGSRD 35824
17-03-18 03:58:07.384 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:07.384 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:07.384 -07 000000424 INF: FPGA: Recv ZSGSRD 35824
17-03-18 03:58:07.394 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:07.394 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:07.394 -07 000000512 INF: FPGA: Recv ZSGSRD 35824
17-03-18 03:58:07.404 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:07.404 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:07.404 -07 000000618 INF: FPGA: Recv ZSGSRD 35821
17-03-18 03:58:07.414 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:07.414 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:07.414 -07 000000502 INF: FPGA: Recv ZSGSRD 35825
17-03-18 03:58:07.424 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:07.424 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:07.424 -07 000000012 INF: FPGA: Recv ZSGSRD 35829
17-03-18 03:58:07.434 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:07.434 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:07.434 -07 000000424 INF: FPGA: Recv ZSGSRD 35823
17-03-18 03:58:07.444 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:07.444 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:07.444 -07 000000618 INF: FPGA: Recv ZSGSRD 35831
17-03-18 03:58:07.454 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:07.454 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:58:07.454 -07 000000480 INF: FPGA: Recv ZPIEZORD 31585
17-03-18 03:58:07.464 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:07.464 -07 000000610 INF: Z Motor: Piezo is near 47.5 V (nominally 0 to 100 V), expect near 56.8 V, since DAC is at 5.682 V. Piezo Error = -9.3 V.
17-03-18 03:58:07.464 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.5 um, Read 10 ADC samples: Avg = 35826 (-169.6 uncal um), Error = 0.9 uncal um, Median = 35824 (-169.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35821 (-169.6 uncal um), Max = 35831 (-169.6 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 03:58:07.464 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35826, posNoise = 5, negNoise = 5
17-03-18 03:58:07.464 -07 000000610 INF: Z Motor: After move to -0.170460, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:58:07.464 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 03:58:07.464 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:58:07.464 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:58:07.464 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:58:07.464 -07 000000479 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:58:07.464 -07 000000012 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 03:58:07.464 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:58:07.464 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 03:58:07.464 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 03:58:07.464 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 03:58:07.464 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 03:58:07.464 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 03:58:07.464 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 03:58:07.474 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 03:58:07.474 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 03:58:07.474 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 03:58:07.474 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 03:58:07.474 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 03:58:07.474 -07 000000012 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 12 ms.
17-03-18 03:58:07.484 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 03:58:07.484 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 03:58:07.484 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 413 413 199 199 37414 150\n [Camera]
17-03-18 03:58:07.684 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 03:58:08.094 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 605
17-03-18 03:58:08.094 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 605
17-03-18 03:58:08.094 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:58:08.094 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:58:08.094 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) start.
17-03-18 03:58:08.094 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 605
17-03-18 03:58:08.094 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 605
17-03-18 03:58:08.104 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:58:08.104 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:58:08.104 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) start.
17-03-18 03:58:08.284 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37414 798
17-03-18 03:58:08.434 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning grn on 948
17-03-18 03:58:08.474 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) end. Duration was 376 ms.
17-03-18 03:58:08.474 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-18 03:58:08.474 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:58:08.474 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) end. Duration was 380 ms.
17-03-18 03:58:08.474 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-18 03:58:08.474 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:58:08.484 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 03:58:08.484 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 03:58:08.484 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-18 03:58:08.494 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-18 03:58:08.634 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1147
17-03-18 03:58:08.634 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1147
17-03-18 03:58:08.634 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:58:08.634 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:58:08.634 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 03:58:08.644 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1147
17-03-18 03:58:08.644 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1147
17-03-18 03:58:08.644 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:58:08.644 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:58:08.644 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-18 03:58:08.824 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP 1340
17-03-18 03:58:08.834 -07 000000424 INF: FPGA: Recv CAMDBLSNAP
17-03-18 03:58:08.834 -07 000000610 INF: FPGA: 'CAMDBLSNAP 413 413 199 199 37414 150' command took 2 ms to send, 1340 ms to get response, and 1346 ms overall
17-03-18 03:58:08.834 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 03:58:08.834 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 5 at Y-position 62.39501953125, Z-Position -0.170477176201863. ------
17-03-18 03:58:08.834 -07 000000479 INF: Y Motor: MoveYZ optimized starting. Moving Y to 63.2326 mm, moving Z to -0.17712 mm
17-03-18 03:58:08.834 -07 000000590 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 03:58:08.834 -07 000000479 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 03:58:08.844 -07 000000512 INF: FPGA: Recv FOCMRRCUR 
17-03-18 03:58:08.844 -07 000000590 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 03:58:08.844 -07 000000424 INF: Y Motor: Entering MoveAbsStepped (target = 101172 steps, sync = True, waitForSettling = True)
17-03-18 03:58:08.844 -07 000000480 INF: Z Motor: Entering MoveAbsStepped (DAC = 38692, sync = True, waitForSettling = False)
17-03-18 03:58:08.844 -07 000000480 INF: Z Motor: Moving to -0.177121 mm, started at -0.170477 mm, distance = -6.64 um
17-03-18 03:58:08.844 -07 000000590 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 03:58:08.844 -07 000000424 INF: Y Motor: Moving to 63.2326 mm, started at 62.3950 mm, delta = 0.8376 mm
17-03-18 03:58:08.854 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:58:08.854 -07 000000512 INF: FPGA: Recv YRDPOS 127785
17-03-18 03:58:08.864 -07 000000480 INF: FPGA: Xmit ZDACW 38692\n [Z Motor]
17-03-18 03:58:08.864 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-18 03:58:08.864 -07 000000424 INF: Y Motor: Encoder = 127785 = motor step 99832.0 = 62.3950 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:58:08.864 -07 000000424 INF: Y Motor: Last commanded position = 62.4026 mm (99844.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 03:58:08.864 -07 000000424 INF: Y Motor: Moving 1340 steps-16
17-03-18 03:58:08.864 -07 000000512 INF: FPGA: Recv ZDACW
17-03-18 03:58:08.874 -07 000000480 INF: FPGA: 'ZDACW 38692' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-18 03:58:08.874 -07 000000480 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:58:08.874 -07 000000512 INF: FPGA: Recv ZDACR 38692
17-03-18 03:58:08.884 -07 000000424 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 03:58:08.884 -07 000000480 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:08.884 -07 000000480 INF: Z Motor: MoveAbsStepped took 39 ms (did NOT wait for settling yet))
17-03-18 03:58:08.934 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 119, FrontChillerTemperature: 4.004458,
17-03-18 03:58:09.024 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 382 ms.
17-03-18 03:58:09.024 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-18 03:58:09.024 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:58:09.024 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 380 ms.
17-03-18 03:58:09.024 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-18 03:58:09.024 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:58:09.024 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 03:58:09.024 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 03:58:09.024 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-18 03:58:09.034 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-18 03:58:09.044 -07 000000012 INF: FPGA: Recv FOCMRRFOC
17-03-18 03:58:09.044 -07 000000590 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 194 ms to get response, and 203 ms overall
17-03-18 03:58:09.254 -07 000000512 INF: FPGA: Recv YMVTILE
17-03-18 03:58:09.254 -07 000000424 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 03:58:09.304 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:58:09.314 -07 000000462 INF: FPGA: Recv YRDPOS 129481
17-03-18 03:58:09.314 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 03:58:09.314 -07 000000424 INF: Y Motor: Encoder = 129481 = motor step 101157.0 = 63.2231 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:58:09.314 -07 000000424 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm)
17-03-18 03:58:09.314 -07 000000424 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.838 mm, average velocity = 2.110 mm/sec
17-03-18 03:58:10.264 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:58:10.264 -07 000000512 INF: FPGA: Recv YRDPOS 129482
17-03-18 03:58:10.274 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:10.274 -07 000000424 INF: Y Motor: Encoder = 129482 = motor step 101157.8 = 63.2236 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:58:10.304 -07 000000424 INF: Y Motor: After move to 63.232609, error = -0.008976, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 03:58:10.304 -07 000000424 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 03:58:10.304 -07 000000424 INF: Y Motor: Moved to 63.2236 after 1460 ms (table move)
17-03-18 03:58:10.304 -07 000000479 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177121 mm (DAC = 38692)
17-03-18 03:58:10.304 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:10.304 -07 000000424 INF: FPGA: Recv ZSGSRD 36855
17-03-18 03:58:10.314 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 03:58:10.314 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:10.314 -07 000000590 INF: FPGA: Recv ZSGSRD 36862
17-03-18 03:58:10.324 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:10.324 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:10.324 -07 000000590 INF: FPGA: Recv ZSGSRD 36863
17-03-18 03:58:10.334 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 03:58:10.334 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:10.334 -07 000000561 INF: FPGA: Recv ZSGSRD 36867
17-03-18 03:58:10.344 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:10.344 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:10.344 -07 000000590 INF: FPGA: Recv ZSGSRD 36853
17-03-18 03:58:10.354 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:10.354 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:10.354 -07 000000462 INF: FPGA: Recv ZSGSRD 36858
17-03-18 03:58:10.364 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:10.364 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:10.364 -07 000000561 INF: FPGA: Recv ZSGSRD 36861
17-03-18 03:58:10.374 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:10.374 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:10.374 -07 000000012 INF: FPGA: Recv ZSGSRD 36854
17-03-18 03:58:10.384 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:10.384 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:10.384 -07 000000480 INF: FPGA: Recv ZSGSRD 36860
17-03-18 03:58:10.394 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:10.394 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:10.394 -07 000000590 INF: FPGA: Recv ZSGSRD 36861
17-03-18 03:58:10.404 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:10.404 -07 000000479 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:58:10.404 -07 000000424 INF: FPGA: Recv ZPIEZORD 33024
17-03-18 03:58:10.414 -07 000000479 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:10.414 -07 000000479 INF: Z Motor: Piezo is near 50.5 V (nominally 0 to 100 V), expect near 59.0 V, since DAC is at 5.904 V. Piezo Error = -8.5 V.
17-03-18 03:58:10.414 -07 000000479 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.1 um, Read 10 ADC samples: Avg = 36859 (-176.2 uncal um), Error = 0.9 uncal um, Median = 36860 (-176.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 36853 (-176.2 uncal um), Max = 36867 (-176.3 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 03:58:10.414 -07 000000479 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36859, posNoise = 8, negNoise = 6
17-03-18 03:58:10.414 -07 000000479 INF: Z Motor: After move to -0.177121, error = 0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:58:10.414 -07 000000479 INF: Z Motor: Settle wait time = 1464 ms, measure time = 105 ms (allowed 150 ms), total time = 1569 ms
17-03-18 03:58:10.414 -07 000000479 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 03:58:10.464 -07 000000479 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1624 ms
17-03-18 03:58:10.464 -07 000000479 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 03:58:10.464 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:58:10.464 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:58:10.474 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:58:10.474 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:58:10.474 -07 000000561 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 03:58:10.474 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:58:10.474 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 03:58:10.474 -07 000000561 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 03:58:10.474 -07 000000561 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 03:58:10.474 -07 000000561 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 03:58:10.484 -07 000000561 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 03:58:10.484 -07 000000561 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 03:58:10.484 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 03:58:10.534 -07 000000480 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 03:58:10.824 -07 000000512 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 03:58:10.824 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 03:58:10.834 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 03:58:10.834 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 679626736, 0x0, 559484976) start.
17-03-18 03:58:10.864 -07 000000479 INF: FPGA: Recv @CAMSNAP 380
17-03-18 03:58:10.864 -07 000000512 INF: FPGA: Recv CAMSNAP
17-03-18 03:58:10.874 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 379 ms to get response, and 384 ms overall
17-03-18 03:58:10.944 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 679626736, 0x0, 559484976) end. Duration was 117 ms.
17-03-18 03:58:10.944 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:58:10.944 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 03:58:10.944 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-18 03:58:10.974 -07 000000462 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 03:58:10.974 -07 000000512 INF: Autofocus start
17-03-18 03:58:10.974 -07 000000512 INF: MeasureProfile start
17-03-18 03:58:10.974 -07 000000480 INF: FPGA: Recv FOCMRRCUR 
17-03-18 03:58:10.984 -07 000000462 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 03:58:10.984 -07 000000462 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 03:58:10.994 -07 000000512 INF: MeasureProfile done
17-03-18 03:58:10.994 -07 000000512 INF: X=0  Z correction [um]=-0.0713522
17-03-18 03:58:10.994 -07 000000512 INF: Autofocus finished
17-03-18 03:58:11.184 -07 000000502 INF: FPGA: Recv FOCMRRIMG
17-03-18 03:58:11.184 -07 000000462 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 03:58:11.184 -07 000000610 INF: ------------ Scan Snapping tile 5 at Y-position 63.2236328125, Z-position -0.177113387344302. ----------
17-03-18 03:58:11.184 -07 000000610 INF: Cycle	119	Tile	5	Exposure Settings		A	413	G	199	T	199	C	413
17-03-18 03:58:11.194 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37189, sync = True, waitForSettling = True)
17-03-18 03:58:11.194 -07 000000610 INF: Z Motor: Moving to -0.170240 mm, started at -0.177113 mm, distance = 6.87 um
17-03-18 03:58:11.194 -07 000000610 INF: FPGA: Xmit ZDACW 37189\n [Z Motor]
17-03-18 03:58:11.194 -07 000000590 INF: FPGA: Recv ZDACW
17-03-18 03:58:11.204 -07 000000610 INF: FPGA: 'ZDACW 37189' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 03:58:11.204 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:58:11.204 -07 000000480 INF: FPGA: Recv ZDACR 37189
17-03-18 03:58:11.214 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:11.214 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 03:58:11.364 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:11.364 -07 000000480 INF: FPGA: Recv ZSGSRD 35792
17-03-18 03:58:11.374 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:58:11.374 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:11.374 -07 000000480 INF: FPGA: Recv ZSGSRD 35788
17-03-18 03:58:11.384 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:11.384 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:11.384 -07 000000480 INF: FPGA: Recv ZSGSRD 35794
17-03-18 03:58:11.394 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:11.394 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:11.394 -07 000000480 INF: FPGA: Recv ZSGSRD 35793
17-03-18 03:58:11.404 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:11.404 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:11.404 -07 000000480 INF: FPGA: Recv ZSGSRD 35798
17-03-18 03:58:11.414 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:11.414 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:11.414 -07 000000590 INF: FPGA: Recv ZSGSRD 35789
17-03-18 03:58:11.424 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:11.424 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:11.424 -07 000000480 INF: FPGA: Recv ZSGSRD 35791
17-03-18 03:58:11.434 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:11.434 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:11.434 -07 000000512 INF: FPGA: Recv ZSGSRD 35795
17-03-18 03:58:11.444 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:11.444 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:11.444 -07 000000512 INF: FPGA: Recv ZSGSRD 35785
17-03-18 03:58:11.454 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:11.454 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:11.454 -07 000000502 INF: FPGA: Recv ZSGSRD 35790
17-03-18 03:58:11.464 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:11.464 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:58:11.464 -07 000000512 INF: FPGA: Recv ZPIEZORD 31554
17-03-18 03:58:11.474 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:11.474 -07 000000610 INF: Z Motor: Piezo is near 47.4 V (nominally 0 to 100 V), expect near 56.7 V, since DAC is at 5.675 V. Piezo Error = -9.3 V.
17-03-18 03:58:11.474 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.2 um, Read 10 ADC samples: Avg = 35792 (-169.4 uncal um), Error = 0.9 uncal um, Median = 35792 (-169.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 35785 (-169.3 uncal um), Max = 35798 (-169.4 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 03:58:11.474 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35792, posNoise = 6, negNoise = 7
17-03-18 03:58:11.474 -07 000000610 INF: Z Motor: After move to -0.170240, error = -0.000018, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:58:11.474 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 03:58:11.474 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:58:11.474 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:58:11.474 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:58:11.474 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:58:11.474 -07 000000479 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 03:58:11.474 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 03:58:11.474 -07 000000012 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 03:58:11.474 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:58:11.474 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 03:58:11.474 -07 000000479 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 03:58:11.474 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 03:58:11.474 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 03:58:11.484 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 03:58:11.484 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 03:58:11.484 -07 000000479 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 03:58:11.484 -07 000000479 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 03:58:11.494 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-18 03:58:11.494 -07 000000012 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 03:58:11.494 -07 000000479 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-18 03:58:11.494 -07 000000479 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 03:58:11.494 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 413 413 199 199 37366 150\n [Camera]
17-03-18 03:58:11.624 -07 000000480 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 03:58:11.624 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 118. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1701, R2=1769, Total=3470. Warn if over 250 bubbles per interval.
17-03-18 03:58:11.694 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 03:58:12.104 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 605
17-03-18 03:58:12.104 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 605
17-03-18 03:58:12.104 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:58:12.104 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:58:12.104 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-18 03:58:12.114 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 605
17-03-18 03:58:12.114 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 605
17-03-18 03:58:12.114 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:58:12.114 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:58:12.114 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 03:58:12.304 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37366 798
17-03-18 03:58:12.444 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning grn on 948
17-03-18 03:58:12.504 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 392 ms.
17-03-18 03:58:12.504 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-18 03:58:12.504 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:58:12.504 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:58:12.504 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 03:58:12.504 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 393 ms.
17-03-18 03:58:12.504 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-18 03:58:12.504 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:58:12.514 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:58:12.514 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-18 03:58:12.644 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1147
17-03-18 03:58:12.644 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1147
17-03-18 03:58:12.654 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:58:12.654 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:58:12.654 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-18 03:58:12.654 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1147
17-03-18 03:58:12.654 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1147
17-03-18 03:58:12.654 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:58:12.654 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:58:12.654 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) start.
17-03-18 03:58:12.844 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP 1340
17-03-18 03:58:12.844 -07 000000590 INF: FPGA: Recv CAMDBLSNAP
17-03-18 03:58:12.844 -07 000000610 INF: FPGA: 'CAMDBLSNAP 413 413 199 199 37366 150' command took 2 ms to send, 1341 ms to get response, and 1346 ms overall
17-03-18 03:58:12.844 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 03:58:12.844 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 6 at Y-position 63.2236328125, Z-Position -0.170258752989043. ------
17-03-18 03:58:12.844 -07 000000479 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 03:58:12.844 -07 000000561 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.0626 mm, moving Z to -0.17631 mm
17-03-18 03:58:12.844 -07 000000561 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 03:58:12.844 -07 000000591 INF: FPGA: Recv FOCMRRCUR 
17-03-18 03:58:12.854 -07 000000479 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 03:58:12.854 -07 000000479 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 03:58:12.854 -07 000000585 INF: Y Motor: Entering MoveAbsStepped (target = 102500 steps, sync = True, waitForSettling = True)
17-03-18 03:58:12.854 -07 000000585 INF: Y Motor: Moving to 64.0626 mm, started at 63.2236 mm, delta = 0.8390 mm
17-03-18 03:58:12.854 -07 000000591 INF: Z Motor: Entering MoveAbsStepped (DAC = 38516, sync = True, waitForSettling = False)
17-03-18 03:58:12.854 -07 000000591 INF: Z Motor: Moving to -0.176315 mm, started at -0.170259 mm, distance = -6.06 um
17-03-18 03:58:12.864 -07 000000591 INF: FPGA: Xmit ZDACW 38516\n [Z Motor]
17-03-18 03:58:12.864 -07 000000579 INF: FPGA: Recv ZDACW
17-03-18 03:58:12.874 -07 000000585 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:58:12.874 -07 000000591 INF: FPGA: 'ZDACW 38516' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-18 03:58:12.874 -07 000000579 INF: FPGA: Recv YRDPOS 129482
17-03-18 03:58:12.884 -07 000000591 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:58:12.884 -07 000000585 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-18 03:58:12.884 -07 000000585 INF: Y Motor: Encoder = 129482 = motor step 101157.8 = 63.2236 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:58:12.884 -07 000000585 INF: Y Motor: Last commanded position = 63.2326 mm (101172.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 03:58:12.884 -07 000000585 INF: Y Motor: Moving 1342 steps-19
17-03-18 03:58:12.884 -07 000000467 INF: FPGA: Recv ZDACR 38516
17-03-18 03:58:12.894 -07 000000591 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 03:58:12.894 -07 000000591 INF: Z Motor: MoveAbsStepped took 37 ms (did NOT wait for settling yet))
17-03-18 03:58:12.894 -07 000000585 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 03:58:13.054 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 399 ms.
17-03-18 03:58:13.054 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 03:58:13.054 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:58:13.054 -07 000000467 INF: FPGA: Recv FOCMRRFOC
17-03-18 03:58:13.054 -07 000000479 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 03:58:13.054 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) end. Duration was 402 ms.
17-03-18 03:58:13.054 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-18 03:58:13.054 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:58:13.054 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-18 03:58:13.054 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 408 ms.
17-03-18 03:58:13.064 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:58:13.064 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-18 03:58:13.264 -07 000000479 INF: FPGA: Recv YMVTILE
17-03-18 03:58:13.264 -07 000000585 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-18 03:58:13.314 -07 000000585 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:58:13.314 -07 000000579 INF: FPGA: Recv YRDPOS 131187
17-03-18 03:58:13.324 -07 000000585 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 03:58:13.324 -07 000000585 INF: Y Motor: Encoder = 131187 = motor step 102489.8 = 64.0562 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:58:13.324 -07 000000585 INF: Y Motor: Position error before settling (table move) = -13 encoder counts (-0.006 mm)
17-03-18 03:58:13.324 -07 000000585 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 387 ms, distance = 0.839 mm, average velocity = 2.168 mm/sec
17-03-18 03:58:14.274 -07 000000585 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:58:14.274 -07 000000591 INF: FPGA: Recv YRDPOS 131188
17-03-18 03:58:14.284 -07 000000585 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:58:14.284 -07 000000585 INF: Y Motor: Encoder = 131188 = motor step 102490.6 = 64.0566 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:58:14.294 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 119, FrontChillerTemperature: 3.979922,
17-03-18 03:58:14.314 -07 000000585 INF: Y Motor: After move to 64.062607, error = -0.005966, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 03:58:14.314 -07 000000585 INF: Y Motor: Position error after settling (table move) = -12 encoder counts (-0.006 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 03:58:14.314 -07 000000585 INF: Y Motor: Moved to 64.0566 after 1465 ms (table move)
17-03-18 03:58:14.314 -07 000000561 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176315 mm (DAC = 38516)
17-03-18 03:58:14.334 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:14.334 -07 000000467 INF: FPGA: Recv ZSGSRD 36744
17-03-18 03:58:14.344 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 20 ms overall
17-03-18 03:58:14.344 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:14.344 -07 000000479 INF: FPGA: Recv ZSGSRD 36732
17-03-18 03:58:14.354 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:14.354 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:14.354 -07 000000512 INF: FPGA: Recv ZSGSRD 36736
17-03-18 03:58:14.364 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:14.364 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:14.364 -07 000000579 INF: FPGA: Recv ZSGSRD 36732
17-03-18 03:58:14.374 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:14.374 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:14.374 -07 000000512 INF: FPGA: Recv ZSGSRD 36727
17-03-18 03:58:14.384 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:14.384 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:14.384 -07 000000585 INF: FPGA: Recv ZSGSRD 36735
17-03-18 03:58:14.394 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:14.394 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:14.394 -07 000000579 INF: FPGA: Recv ZSGSRD 36734
17-03-18 03:58:14.404 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:14.404 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:14.404 -07 000000585 INF: FPGA: Recv ZSGSRD 36739
17-03-18 03:58:14.414 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:14.414 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:14.414 -07 000000591 INF: FPGA: Recv ZSGSRD 36737
17-03-18 03:58:14.424 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:14.424 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:14.424 -07 000000618 INF: FPGA: Recv ZSGSRD 36740
17-03-18 03:58:14.434 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:14.434 -07 000000561 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:58:14.434 -07 000000512 INF: FPGA: Recv ZPIEZORD 32848
17-03-18 03:58:14.444 -07 000000561 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:14.444 -07 000000561 INF: Z Motor: Piezo is near 50.2 V (nominally 0 to 100 V), expect near 58.8 V, since DAC is at 5.877 V. Piezo Error = -8.6 V.
17-03-18 03:58:14.444 -07 000000561 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.3 um, Read 10 ADC samples: Avg = 36736 (-175.4 uncal um), Error = 0.9 uncal um, Median = 36736 (-175.4 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 36727 (-175.4 uncal um), Max = 36744 (-175.5 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-18 03:58:14.444 -07 000000561 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36736, posNoise = 8, negNoise = 9
17-03-18 03:58:14.444 -07 000000561 INF: Z Motor: After move to -0.176315, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:58:14.444 -07 000000561 INF: Z Motor: Settle wait time = 1467 ms, measure time = 121 ms (allowed 150 ms), total time = 1588 ms
17-03-18 03:58:14.444 -07 000000561 INF: Z Motor: Waiting extra 29 ms after reading position to reach expected total of 150 ms
17-03-18 03:58:14.474 -07 000000561 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1623 ms
17-03-18 03:58:14.474 -07 000000561 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 03:58:14.474 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:58:14.474 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:58:14.474 -07 000000467 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:58:14.474 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 03:58:14.474 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:58:14.474 -07 000000591 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:58:14.474 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 03:58:14.474 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 03:58:14.484 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 03:58:14.484 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 03:58:14.484 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 03:58:14.484 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-18 03:58:14.494 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 03:58:14.534 -07 000000561 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 03:58:14.834 -07 000000479 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 03:58:14.834 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 03:58:14.834 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 03:58:14.964 -07 000000512 INF: FPGA: Recv @CAMSNAP 380
17-03-18 03:58:14.964 -07 000000512 INF: FPGA: Recv CAMSNAP
17-03-18 03:58:14.964 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 466 ms to get response, and 475 ms overall
17-03-18 03:58:14.964 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1201016592, 0x0, 559484976) start.
17-03-18 03:58:15.084 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1201016592, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 03:58:15.084 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:58:15.084 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 03:58:15.084 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 248 ms.
17-03-18 03:58:15.164 -07 000000591 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 03:58:15.164 -07 000000467 INF: Autofocus start
17-03-18 03:58:15.164 -07 000000467 INF: MeasureProfile start
17-03-18 03:58:15.164 -07 000000479 INF: FPGA: Recv FOCMRRCUR 
17-03-18 03:58:15.174 -07 000000591 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 03:58:15.174 -07 000000591 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 03:58:15.174 -07 000000467 INF: MeasureProfile done
17-03-18 03:58:15.174 -07 000000467 INF: X=16  Z correction [um]=0.01042744
17-03-18 03:58:15.174 -07 000000467 INF: Autofocus finished
17-03-18 03:58:15.374 -07 000000618 INF: FPGA: Recv FOCMRRIMG
17-03-18 03:58:15.374 -07 000000591 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 03:58:15.374 -07 000000610 INF: ------------ Scan Snapping tile 6 at Y-position 64.056640625, Z-position -0.176323209250865. ----------
17-03-18 03:58:15.374 -07 000000610 INF: Cycle	119	Tile	6	Exposure Settings		A	413	G	199	T	199	C	413
17-03-18 03:58:15.384 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37030, sync = True, waitForSettling = True)
17-03-18 03:58:15.384 -07 000000610 INF: Z Motor: Moving to -0.169512 mm, started at -0.176323 mm, distance = 6.81 um
17-03-18 03:58:15.384 -07 000000610 INF: FPGA: Xmit ZDACW 37030\n [Z Motor]
17-03-18 03:58:15.384 -07 000000618 INF: FPGA: Recv ZDACW
17-03-18 03:58:15.394 -07 000000610 INF: FPGA: 'ZDACW 37030' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:15.394 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:58:15.394 -07 000000561 INF: FPGA: Recv ZDACR 37030
17-03-18 03:58:15.404 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:15.404 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 03:58:15.554 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:15.554 -07 000000591 INF: FPGA: Recv ZSGSRD 35677
17-03-18 03:58:15.564 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:58:15.564 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:15.564 -07 000000579 INF: FPGA: Recv ZSGSRD 35676
17-03-18 03:58:15.574 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:15.574 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:15.574 -07 000000479 INF: FPGA: Recv ZSGSRD 35676
17-03-18 03:58:15.584 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:15.584 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:15.584 -07 000000579 INF: FPGA: Recv ZSGSRD 35675
17-03-18 03:58:15.594 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:15.594 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:15.594 -07 000000467 INF: FPGA: Recv ZSGSRD 35678
17-03-18 03:58:15.604 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:15.604 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:15.604 -07 000000512 INF: FPGA: Recv ZSGSRD 35677
17-03-18 03:58:15.614 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:15.614 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:15.614 -07 000000585 INF: FPGA: Recv ZSGSRD 35671
17-03-18 03:58:15.624 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:15.624 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:15.624 -07 000000579 INF: FPGA: Recv ZSGSRD 35682
17-03-18 03:58:15.634 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:15.634 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:15.634 -07 000000591 INF: FPGA: Recv ZSGSRD 35673
17-03-18 03:58:15.644 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:15.644 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:15.644 -07 000000512 INF: FPGA: Recv ZSGSRD 35673
17-03-18 03:58:15.654 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:15.654 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:58:15.654 -07 000000618 INF: FPGA: Recv ZPIEZORD 31462
17-03-18 03:58:15.664 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:15.664 -07 000000610 INF: Z Motor: Piezo is near 47.2 V (nominally 0 to 100 V), expect near 56.5 V, since DAC is at 5.650 V. Piezo Error = -9.3 V.
17-03-18 03:58:15.664 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.5 um, Read 10 ADC samples: Avg = 35676 (-168.6 uncal um), Error = 0.9 uncal um, Median = 35676 (-168.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35671 (-168.6 uncal um), Max = 35682 (-168.7 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 03:58:15.664 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35676, posNoise = 6, negNoise = 5
17-03-18 03:58:15.664 -07 000000610 INF: Z Motor: After move to -0.169512, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:58:15.664 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 03:58:15.664 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:58:15.664 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:58:15.664 -07 000000579 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:58:15.664 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 03:58:15.664 -07 000000591 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 03:58:15.664 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:58:15.664 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 03:58:15.664 -07 000000479 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:58:15.664 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 03:58:15.664 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 03:58:15.664 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 03:58:15.664 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 03:58:15.674 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 03:58:15.674 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 03:58:15.674 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 03:58:15.674 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 03:58:15.684 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 03:58:15.684 -07 000000591 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 03:58:15.684 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 03:58:15.684 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 03:58:15.684 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 413 413 199 199 37207 150\n [Camera]
17-03-18 03:58:15.884 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 03:58:16.294 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 605
17-03-18 03:58:16.294 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 605
17-03-18 03:58:16.294 -07 000000479 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:58:16.304 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 605
17-03-18 03:58:16.304 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 605
17-03-18 03:58:16.304 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:58:16.304 -07 000000479 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:58:16.304 -07 000000479 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-18 03:58:16.304 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:58:16.304 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) start.
17-03-18 03:58:16.494 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37207 798
17-03-18 03:58:16.624 -07 000000618 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 03:58:16.624 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 118. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1701, R2=1769, Total=3470. Warn if over 250 bubbles per interval.
17-03-18 03:58:16.634 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP turning grn on 948
17-03-18 03:58:16.694 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) end. Duration was 383 ms.
17-03-18 03:58:16.694 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 383 ms.
17-03-18 03:58:16.694 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:58:16.694 -07 000000479 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 389 ms.
17-03-18 03:58:16.694 -07 000000479 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-18 03:58:16.694 -07 000000479 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:58:16.694 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:58:16.694 -07 000000479 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:58:16.694 -07 000000479 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 03:58:16.704 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 03:58:16.834 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1147
17-03-18 03:58:16.834 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1147
17-03-18 03:58:16.844 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:58:16.844 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1147
17-03-18 03:58:16.844 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1147
17-03-18 03:58:16.844 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:58:16.964 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:58:16.964 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start.
17-03-18 03:58:16.964 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:58:16.964 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 03:58:17.034 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP 1339
17-03-18 03:58:17.034 -07 000000585 INF: FPGA: Recv CAMDBLSNAP
17-03-18 03:58:17.034 -07 000000610 INF: FPGA: 'CAMDBLSNAP 413 413 199 199 37207 150' command took 2 ms to send, 1341 ms to get response, and 1347 ms overall
17-03-18 03:58:17.034 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 03:58:17.034 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 7 at Y-position 64.056640625, Z-Position -0.169513544380599. ------
17-03-18 03:58:17.034 -07 000000479 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 03:58:17.034 -07 000000591 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.8926 mm, moving Z to -0.17590 mm
17-03-18 03:58:17.034 -07 000000591 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 03:58:17.034 -07 000000585 INF: Y Motor: Entering MoveAbsStepped (target = 103828 steps, sync = True, waitForSettling = True)
17-03-18 03:58:17.034 -07 000000585 INF: Y Motor: Moving to 64.8926 mm, started at 64.0566 mm, delta = 0.8360 mm
17-03-18 03:58:17.034 -07 000000618 INF: Z Motor: Entering MoveAbsStepped (DAC = 38425, sync = True, waitForSettling = False)
17-03-18 03:58:17.034 -07 000000618 INF: Z Motor: Moving to -0.175898 mm, started at -0.169514 mm, distance = -6.38 um
17-03-18 03:58:17.034 -07 000000424 INF: FPGA: Recv FOCMRRCUR 
17-03-18 03:58:17.044 -07 000000479 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 03:58:17.044 -07 000000618 INF: FPGA: Xmit ZDACW 38425\n [Z Motor]
17-03-18 03:58:17.044 -07 000000561 INF: FPGA: Recv ZDACW
17-03-18 03:58:17.054 -07 000000618 INF: FPGA: 'ZDACW 38425' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:58:17.054 -07 000000585 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:58:17.054 -07 000000424 INF: FPGA: Recv YRDPOS 131188
17-03-18 03:58:17.064 -07 000000479 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 03:58:17.064 -07 000000585 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 20 ms overall
17-03-18 03:58:17.064 -07 000000585 INF: Y Motor: Encoder = 131188 = motor step 102490.6 = 64.0566 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:58:17.064 -07 000000585 INF: Y Motor: Last commanded position = 64.0626 mm (102500.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 03:58:17.064 -07 000000585 INF: Y Motor: Moving 1338 steps-13
17-03-18 03:58:17.074 -07 000000618 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:58:17.074 -07 000000561 INF: FPGA: Recv ZDACR 38425
17-03-18 03:58:17.084 -07 000000618 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 03:58:17.084 -07 000000618 INF: Z Motor: MoveAbsStepped took 40 ms (did NOT wait for settling yet))
17-03-18 03:58:17.084 -07 000000585 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 03:58:17.264 -07 000000618 INF: FPGA: Recv FOCMRRFOC
17-03-18 03:58:17.264 -07 000000479 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 03:58:17.364 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 398 ms.
17-03-18 03:58:17.364 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 03:58:17.364 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:58:17.364 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 398 ms.
17-03-18 03:58:17.364 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 03:58:17.364 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:58:17.364 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 03:58:17.364 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 03:58:17.364 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 527 ms.
17-03-18 03:58:17.374 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 530 ms.
17-03-18 03:58:17.464 -07 000000424 INF: FPGA: Recv YMVTILE
17-03-18 03:58:17.464 -07 000000585 INF: FPGA: 'YMVTILE 1327' command took 2 ms to send, 370 ms to get response, and 399 ms overall
17-03-18 03:58:17.504 -07 000000585 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:58:17.514 -07 000000012 INF: FPGA: Recv YRDPOS 132870
17-03-18 03:58:17.514 -07 000000585 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 03:58:17.514 -07 000000585 INF: Y Motor: Encoder = 132870 = motor step 103804.7 = 64.8779 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:58:17.514 -07 000000585 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-18 03:58:17.514 -07 000000585 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 399 ms, distance = 0.836 mm, average velocity = 2.095 mm/sec
17-03-18 03:58:18.464 -07 000000585 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:58:18.464 -07 000000618 INF: FPGA: Recv YRDPOS 132871
17-03-18 03:58:18.474 -07 000000585 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:18.474 -07 000000585 INF: Y Motor: Encoder = 132871 = motor step 103805.5 = 64.8784 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:58:18.494 -07 000000585 INF: Y Motor: After move to 64.892609, error = -0.014191, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 03:58:18.504 -07 000000585 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 03:58:18.504 -07 000000585 INF: Y Motor: Moved to 64.8784 after 1460 ms (table move)
17-03-18 03:58:18.504 -07 000000591 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175898 mm (DAC = 38425)
17-03-18 03:58:18.504 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:18.504 -07 000000424 INF: FPGA: Recv ZSGSRD 36670
17-03-18 03:58:18.514 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 03:58:18.514 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:18.514 -07 000000424 INF: FPGA: Recv ZSGSRD 36676
17-03-18 03:58:18.524 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:18.524 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:18.524 -07 000000424 INF: FPGA: Recv ZSGSRD 36665
17-03-18 03:58:18.534 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:18.534 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:18.534 -07 000000424 INF: FPGA: Recv ZSGSRD 36666
17-03-18 03:58:18.544 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:18.544 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:18.544 -07 000000424 INF: FPGA: Recv ZSGSRD 36667
17-03-18 03:58:18.554 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:18.554 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:18.554 -07 000000424 INF: FPGA: Recv ZSGSRD 36663
17-03-18 03:58:18.564 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:18.564 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:18.564 -07 000000424 INF: FPGA: Recv ZSGSRD 36669
17-03-18 03:58:18.574 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:18.574 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:18.574 -07 000000424 INF: FPGA: Recv ZSGSRD 36671
17-03-18 03:58:18.584 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:18.584 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:18.584 -07 000000424 INF: FPGA: Recv ZSGSRD 36673
17-03-18 03:58:18.594 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:18.594 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:18.594 -07 000000424 INF: FPGA: Recv ZSGSRD 36682
17-03-18 03:58:18.604 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:18.604 -07 000000591 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:58:18.604 -07 000000424 INF: FPGA: Recv ZPIEZORD 32752
17-03-18 03:58:18.614 -07 000000591 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:18.614 -07 000000591 INF: Z Motor: Piezo is near 50.0 V (nominally 0 to 100 V), expect near 58.6 V, since DAC is at 5.863 V. Piezo Error = -8.7 V.
17-03-18 03:58:18.614 -07 000000591 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.9 um, Read 10 ADC samples: Avg = 36670 (-175.0 uncal um), Error = 0.9 uncal um, Median = 36670 (-175.0 uncal um), StdDev = 6 (0.0 uncal um), Range = 19 (0.1 uncal um), Min = 36663 (-175.0 uncal um), Max = 36682 (-175.1 uncal um), Pos Noise = 12 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 03:58:18.614 -07 000000591 INF: Z Motor: ADC noise = 12, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36670, posNoise = 12, negNoise = 7
17-03-18 03:58:18.614 -07 000000591 INF: Z Motor: After move to -0.175898, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:58:18.614 -07 000000591 INF: Z Motor: Settle wait time = 1463 ms, measure time = 107 ms (allowed 150 ms), total time = 1570 ms
17-03-18 03:58:18.614 -07 000000591 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-18 03:58:18.664 -07 000000591 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1623 ms
17-03-18 03:58:18.664 -07 000000591 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 03:58:18.664 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:58:18.664 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:58:18.664 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:58:18.664 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:58:18.664 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 03:58:18.664 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:58:18.674 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 03:58:18.674 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 03:58:18.674 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 03:58:18.674 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 03:58:18.684 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 03:58:18.684 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 03:58:18.684 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 03:58:18.724 -07 000000579 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 03:58:19.024 -07 000000585 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 03:58:19.024 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 03:58:19.034 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 03:58:19.034 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2298580584, 0x0, 559484976) start.
17-03-18 03:58:19.064 -07 000000424 INF: FPGA: Recv @CAMSNAP 380
17-03-18 03:58:19.064 -07 000000462 INF: FPGA: Recv CAMSNAP
17-03-18 03:58:19.064 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 379 ms to get response, and 384 ms overall
17-03-18 03:58:19.144 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2298580584, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 03:58:19.144 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:58:19.144 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 03:58:19.144 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-18 03:58:19.164 -07 000000480 INF: Autofocus start
17-03-18 03:58:19.164 -07 000000480 INF: MeasureProfile start
17-03-18 03:58:19.164 -07 000000591 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 03:58:19.164 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-18 03:58:19.174 -07 000000591 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 03:58:19.174 -07 000000591 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 03:58:19.174 -07 000000480 INF: MeasureProfile done
17-03-18 03:58:19.174 -07 000000480 INF: X=16  Z correction [um]=0.01042744
17-03-18 03:58:19.174 -07 000000480 INF: Autofocus finished
17-03-18 03:58:19.374 -07 000000561 INF: FPGA: Recv FOCMRRIMG
17-03-18 03:58:19.374 -07 000000591 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 03:58:19.374 -07 000000610 INF: ------------ Scan Snapping tile 7 at Y-position 64.87841796875, Z-position -0.175899211249509. ----------
17-03-18 03:58:19.374 -07 000000610 INF: Cycle	119	Tile	7	Exposure Settings		A	413	G	199	T	199	C	413
17-03-18 03:58:19.384 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36940, sync = True, waitForSettling = True)
17-03-18 03:58:19.384 -07 000000610 INF: Z Motor: Moving to -0.169100 mm, started at -0.175899 mm, distance = 6.80 um
17-03-18 03:58:19.384 -07 000000610 INF: FPGA: Xmit ZDACW 36940\n [Z Motor]
17-03-18 03:58:19.384 -07 000000561 INF: FPGA: Recv ZDACW
17-03-18 03:58:19.394 -07 000000610 INF: FPGA: 'ZDACW 36940' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:19.394 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:58:19.394 -07 000000479 INF: FPGA: Recv ZDACR 36940
17-03-18 03:58:19.404 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:19.404 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 03:58:19.554 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:19.554 -07 000000591 INF: FPGA: Recv ZSGSRD 35617
17-03-18 03:58:19.564 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:58:19.564 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:19.564 -07 000000467 INF: FPGA: Recv ZSGSRD 35616
17-03-18 03:58:19.574 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:19.574 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:19.574 -07 000000561 INF: FPGA: Recv ZSGSRD 35615
17-03-18 03:58:19.584 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:19.584 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:19.584 -07 000000480 INF: FPGA: Recv ZSGSRD 35612
17-03-18 03:58:19.594 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:19.594 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:19.594 -07 000000512 INF: FPGA: Recv ZSGSRD 35611
17-03-18 03:58:19.604 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:19.604 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:19.604 -07 000000467 INF: FPGA: Recv ZSGSRD 35612
17-03-18 03:58:19.614 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:19.614 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:19.614 -07 000000561 INF: FPGA: Recv ZSGSRD 35613
17-03-18 03:58:19.624 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:19.624 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:19.624 -07 000000012 INF: FPGA: Recv ZSGSRD 35614
17-03-18 03:58:19.634 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:19.634 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:19.634 -07 000000618 INF: FPGA: Recv ZSGSRD 35621
17-03-18 03:58:19.644 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:19.654 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:19.654 -07 000000012 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 119, FrontChillerTemperature: 3.986717,
17-03-18 03:58:19.654 -07 000000479 INF: FPGA: Recv ZSGSRD 35613
17-03-18 03:58:19.664 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 03:58:19.674 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:58:19.674 -07 000000467 INF: FPGA: Recv ZPIEZORD 31376
17-03-18 03:58:19.684 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 03:58:19.684 -07 000000610 INF: Z Motor: Piezo is near 47.0 V (nominally 0 to 100 V), expect near 56.4 V, since DAC is at 5.637 V. Piezo Error = -9.3 V.
17-03-18 03:58:19.684 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.1 um, Read 10 ADC samples: Avg = 35614 (-168.2 uncal um), Error = 0.9 uncal um, Median = 35614 (-168.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35611 (-168.2 uncal um), Max = 35621 (-168.3 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 03:58:19.684 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35614, posNoise = 7, negNoise = 3
17-03-18 03:58:19.684 -07 000000610 INF: Z Motor: After move to -0.169100, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:58:19.684 -07 000000610 INF: Z Motor: MoveAbsStepped took 301 ms)
17-03-18 03:58:19.684 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:58:19.684 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:58:19.684 -07 000000591 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:58:19.684 -07 000000012 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:58:19.684 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 03:58:19.684 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 03:58:19.684 -07 000000467 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 03:58:19.684 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:58:19.684 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 03:58:19.684 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 03:58:19.684 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 03:58:19.684 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 03:58:19.694 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 03:58:19.694 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 03:58:19.694 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-18 03:58:19.694 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 03:58:19.704 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 03:58:19.704 -07 000000467 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 03:58:19.704 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 13 ms.
17-03-18 03:58:19.704 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 17 ms.
17-03-18 03:58:19.714 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 413 413 199 199 37117 150\n [Camera]
17-03-18 03:58:19.904 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 03:58:20.324 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 605
17-03-18 03:58:20.324 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 605
17-03-18 03:58:20.324 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:58:20.324 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 605
17-03-18 03:58:20.324 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 605
17-03-18 03:58:20.324 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:58:20.324 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:58:20.324 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 03:58:20.324 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:58:20.324 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 2317661968, 0x0, 391868352) start.
17-03-18 03:58:20.514 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37117 798
17-03-18 03:58:20.664 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP turning grn on 948
17-03-18 03:58:20.724 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 2317661968, 0x0, 391868352) end. Duration was 395 ms.
17-03-18 03:58:20.724 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 03:58:20.724 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:58:20.724 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 398 ms.
17-03-18 03:58:20.724 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 03:58:20.724 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:58:20.724 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:58:20.724 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 03:58:20.734 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:58:20.734 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-18 03:58:20.864 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1147
17-03-18 03:58:20.864 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1147
17-03-18 03:58:20.864 -07 000000479 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:58:20.864 -07 000000479 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:58:20.864 -07 000000479 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) start.
17-03-18 03:58:20.864 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1147
17-03-18 03:58:20.864 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1147
17-03-18 03:58:20.864 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:58:20.864 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:58:20.864 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 03:58:21.054 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP 1340
17-03-18 03:58:21.054 -07 000000424 INF: FPGA: Recv CAMDBLSNAP
17-03-18 03:58:21.054 -07 000000610 INF: FPGA: 'CAMDBLSNAP 413 413 199 199 37117 150' command took 2 ms to send, 1337 ms to get response, and 1351 ms overall
17-03-18 03:58:21.054 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 03:58:21.054 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 8 at Y-position 64.87841796875, Z-Position -0.16911524322781. ------
17-03-18 03:58:21.064 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 03:58:21.064 -07 000000561 INF: Y Motor: MoveYZ optimized starting. Moving Y to 65.7226 mm, moving Z to -0.17573 mm
17-03-18 03:58:21.064 -07 000000561 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 03:58:21.064 -07 000000480 INF: Y Motor: Entering MoveAbsStepped (target = 105156 steps, sync = True, waitForSettling = True)
17-03-18 03:58:21.064 -07 000000480 INF: Y Motor: Moving to 65.7226 mm, started at 64.8784 mm, delta = 0.8442 mm
17-03-18 03:58:21.064 -07 000000012 INF: Z Motor: Entering MoveAbsStepped (DAC = 38387, sync = True, waitForSettling = False)
17-03-18 03:58:21.064 -07 000000012 INF: Z Motor: Moving to -0.175724 mm, started at -0.169115 mm, distance = -6.61 um
17-03-18 03:58:21.064 -07 000000579 INF: FPGA: Recv FOCMRRCUR 
17-03-18 03:58:21.074 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 03:58:21.074 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:58:21.074 -07 000000579 INF: FPGA: Recv YRDPOS 132871
17-03-18 03:58:21.084 -07 000000012 INF: FPGA: Xmit ZDACW 38387\n [Z Motor]
17-03-18 03:58:21.084 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-18 03:58:21.084 -07 000000480 INF: Y Motor: Encoder = 132871 = motor step 103805.5 = 64.8784 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:58:21.084 -07 000000480 INF: Y Motor: Last commanded position = 64.8926 mm (103828.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 03:58:21.084 -07 000000480 INF: Y Motor: Moving 1351 steps-30
17-03-18 03:58:21.084 -07 000000590 INF: FPGA: Recv ZDACW
17-03-18 03:58:21.094 -07 000000512 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 03:58:21.094 -07 000000012 INF: FPGA: 'ZDACW 38387' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-18 03:58:21.104 -07 000000480 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 03:58:21.114 -07 000000012 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:58:21.114 -07 000000579 INF: FPGA: Recv ZDACR 38387
17-03-18 03:58:21.124 -07 000000012 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-18 03:58:21.124 -07 000000012 INF: Z Motor: MoveAbsStepped took 54 ms (did NOT wait for settling yet))
17-03-18 03:58:21.264 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 395 ms.
17-03-18 03:58:21.264 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 03:58:21.264 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:58:21.264 -07 000000479 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) end. Duration was 397 ms.
17-03-18 03:58:21.264 -07 000000479 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 03:58:21.264 -07 000000479 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:58:21.264 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:58:21.274 -07 000000479 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 03:58:21.274 -07 000000479 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-18 03:58:21.274 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 406 ms.
17-03-18 03:58:21.294 -07 000000591 INF: FPGA: Recv FOCMRRFOC
17-03-18 03:58:21.294 -07 000000512 INF: FPGA: 'FOCMRRFOC' command took 2 ms to send, 195 ms to get response, and 225 ms overall
17-03-18 03:58:21.474 -07 000000012 INF: FPGA: Recv YMVTILE
17-03-18 03:58:21.474 -07 000000480 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 03:58:21.524 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:58:21.524 -07 000000462 INF: FPGA: Recv YRDPOS 134581
17-03-18 03:58:21.534 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 03:58:21.534 -07 000000480 INF: Y Motor: Encoder = 134581 = motor step 105141.4 = 65.7134 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:58:21.534 -07 000000480 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm)
17-03-18 03:58:21.534 -07 000000480 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.844 mm, average velocity = 2.126 mm/sec
17-03-18 03:58:21.624 -07 000000467 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 03:58:21.624 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 118. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1701, R2=1769, Total=3470. Warn if over 250 bubbles per interval.
17-03-18 03:58:22.484 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:58:22.484 -07 000000479 INF: FPGA: Recv YRDPOS 134581
17-03-18 03:58:22.494 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:58:22.494 -07 000000480 INF: Y Motor: Encoder = 134581 = motor step 105141.4 = 65.7134 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:58:22.524 -07 000000480 INF: Y Motor: After move to 65.722610, error = -0.009232, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 03:58:22.524 -07 000000480 INF: Y Motor: Position error after settling (table move) = -19 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 03:58:22.524 -07 000000480 INF: Y Motor: Moved to 65.7134 after 1460 ms (table move)
17-03-18 03:58:22.534 -07 000000561 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175724 mm (DAC = 38387)
17-03-18 03:58:22.534 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:22.534 -07 000000591 INF: FPGA: Recv ZSGSRD 36645
17-03-18 03:58:22.544 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:22.544 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:22.544 -07 000000591 INF: FPGA: Recv ZSGSRD 36652
17-03-18 03:58:22.554 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:22.554 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:22.554 -07 000000591 INF: FPGA: Recv ZSGSRD 36643
17-03-18 03:58:22.564 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:22.564 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:22.564 -07 000000591 INF: FPGA: Recv ZSGSRD 36644
17-03-18 03:58:22.574 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:22.574 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:22.574 -07 000000480 INF: FPGA: Recv ZSGSRD 36638
17-03-18 03:58:22.584 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:22.584 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:22.584 -07 000000480 INF: FPGA: Recv ZSGSRD 36643
17-03-18 03:58:22.594 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:22.594 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:22.594 -07 000000480 INF: FPGA: Recv ZSGSRD 36647
17-03-18 03:58:22.604 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:22.604 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:22.604 -07 000000590 INF: FPGA: Recv ZSGSRD 36638
17-03-18 03:58:22.614 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:22.614 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:22.614 -07 000000590 INF: FPGA: Recv ZSGSRD 36649
17-03-18 03:58:22.624 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:22.624 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:22.624 -07 000000012 INF: FPGA: Recv ZSGSRD 36651
17-03-18 03:58:22.634 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:22.634 -07 000000561 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:58:22.634 -07 000000590 INF: FPGA: Recv ZPIEZORD 32699
17-03-18 03:58:22.644 -07 000000561 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:22.644 -07 000000561 INF: Z Motor: Piezo is near 49.9 V (nominally 0 to 100 V), expect near 58.6 V, since DAC is at 5.857 V. Piezo Error = -8.7 V.
17-03-18 03:58:22.644 -07 000000561 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.7 um, Read 10 ADC samples: Avg = 36645 (-174.9 uncal um), Error = 0.9 uncal um, Median = 36644 (-174.8 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 36638 (-174.8 uncal um), Max = 36652 (-174.9 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 03:58:22.644 -07 000000561 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36645, posNoise = 7, negNoise = 7
17-03-18 03:58:22.644 -07 000000561 INF: Z Motor: After move to -0.175724, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:58:22.644 -07 000000561 INF: Z Motor: Settle wait time = 1464 ms, measure time = 110 ms (allowed 150 ms), total time = 1574 ms
17-03-18 03:58:22.644 -07 000000561 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-18 03:58:22.684 -07 000000561 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1617 ms
17-03-18 03:58:22.684 -07 000000561 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 03:58:22.684 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:58:22.684 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:58:22.684 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:58:22.684 -07 000000467 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:58:22.684 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 03:58:22.684 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:58:22.684 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 03:58:22.684 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 03:58:22.694 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 03:58:22.694 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 03:58:22.704 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-18 03:58:22.704 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms.
17-03-18 03:58:22.704 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 03:58:22.754 -07 000000462 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 03:58:23.054 -07 000000479 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 03:58:23.054 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 03:58:23.054 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 03:58:23.054 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2353084232, 0x0, 559484976) start.
17-03-18 03:58:23.094 -07 000000424 INF: FPGA: Recv @CAMSNAP 380
17-03-18 03:58:23.094 -07 000000561 INF: FPGA: Recv CAMSNAP
17-03-18 03:58:23.094 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 383 ms to get response, and 384 ms overall
17-03-18 03:58:23.184 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2353084232, 0x0, 559484976) end. Duration was 127 ms.
17-03-18 03:58:23.184 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:58:23.184 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 03:58:23.184 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 130 ms.
17-03-18 03:58:23.194 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 03:58:23.194 -07 000000462 INF: Autofocus start
17-03-18 03:58:23.194 -07 000000462 INF: MeasureProfile start
17-03-18 03:58:23.194 -07 000000591 INF: FPGA: Recv FOCMRRCUR 
17-03-18 03:58:23.204 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 03:58:23.204 -07 000000424 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 03:58:23.204 -07 000000462 INF: MeasureProfile done
17-03-18 03:58:23.204 -07 000000462 INF: X=0  Z correction [um]=-0.0713522
17-03-18 03:58:23.204 -07 000000462 INF: Autofocus finished
17-03-18 03:58:23.404 -07 000000591 INF: FPGA: Recv FOCMRRIMG
17-03-18 03:58:23.404 -07 000000424 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 03:58:23.414 -07 000000610 INF: ------------ Scan Snapping tile 8 at Y-position 65.71337890625, Z-position -0.175738605945965. ----------
17-03-18 03:58:23.414 -07 000000610 INF: Cycle	119	Tile	8	Exposure Settings		A	413	G	199	T	199	C	413
17-03-18 03:58:23.414 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36884, sync = True, waitForSettling = True)
17-03-18 03:58:23.414 -07 000000610 INF: Z Motor: Moving to -0.168844 mm, started at -0.175739 mm, distance = 6.89 um
17-03-18 03:58:23.414 -07 000000610 INF: FPGA: Xmit ZDACW 36884\n [Z Motor]
17-03-18 03:58:23.424 -07 000000512 INF: FPGA: Recv ZDACW
17-03-18 03:58:23.424 -07 000000610 INF: FPGA: 'ZDACW 36884' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 03:58:23.424 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:58:23.424 -07 000000462 INF: FPGA: Recv ZDACR 36884
17-03-18 03:58:23.434 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:23.434 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 03:58:23.584 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:23.584 -07 000000479 INF: FPGA: Recv ZSGSRD 35575
17-03-18 03:58:23.594 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:58:23.594 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:23.594 -07 000000502 INF: FPGA: Recv ZSGSRD 35578
17-03-18 03:58:23.604 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:23.604 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:23.604 -07 000000479 INF: FPGA: Recv ZSGSRD 35580
17-03-18 03:58:23.614 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:23.614 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:23.614 -07 000000502 INF: FPGA: Recv ZSGSRD 35567
17-03-18 03:58:23.624 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:23.624 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:23.624 -07 000000591 INF: FPGA: Recv ZSGSRD 35571
17-03-18 03:58:23.634 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:23.634 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:23.634 -07 000000479 INF: FPGA: Recv ZSGSRD 35574
17-03-18 03:58:23.644 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:23.644 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:23.644 -07 000000591 INF: FPGA: Recv ZSGSRD 35573
17-03-18 03:58:23.654 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:23.654 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:23.654 -07 000000479 INF: FPGA: Recv ZSGSRD 35570
17-03-18 03:58:23.664 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:23.664 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:23.664 -07 000000591 INF: FPGA: Recv ZSGSRD 35576
17-03-18 03:58:23.674 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:23.674 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:23.674 -07 000000467 INF: FPGA: Recv ZSGSRD 35577
17-03-18 03:58:23.684 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:23.684 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:58:23.684 -07 000000502 INF: FPGA: Recv ZPIEZORD 31315
17-03-18 03:58:23.694 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:23.694 -07 000000610 INF: Z Motor: Piezo is near 46.9 V (nominally 0 to 100 V), expect near 56.3 V, since DAC is at 5.628 V. Piezo Error = -9.4 V.
17-03-18 03:58:23.694 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.8 um, Read 10 ADC samples: Avg = 35574 (-168.0 uncal um), Error = 0.9 uncal um, Median = 35574 (-168.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 35567 (-167.9 uncal um), Max = 35580 (-168.0 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 03:58:23.694 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35574, posNoise = 6, negNoise = 7
17-03-18 03:58:23.694 -07 000000610 INF: Z Motor: After move to -0.168844, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:58:23.694 -07 000000610 INF: Z Motor: MoveAbsStepped took 274 ms)
17-03-18 03:58:23.694 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:58:23.694 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:58:23.694 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:58:23.694 -07 000000467 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:58:23.694 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 03:58:23.694 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:58:23.694 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 03:58:23.694 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 03:58:23.694 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 03:58:23.694 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 03:58:23.694 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 03:58:23.694 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 03:58:23.704 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 03:58:23.704 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 03:58:23.704 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 03:58:23.704 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 03:58:23.714 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 03:58:23.714 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 03:58:23.714 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 03:58:23.714 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 03:58:23.714 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 413 413 199 199 37061 150\n [Camera]
17-03-18 03:58:23.914 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 03:58:24.324 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 605
17-03-18 03:58:24.324 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 605
17-03-18 03:58:24.324 -07 000000479 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:58:24.324 -07 000000479 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:58:24.324 -07 000000479 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-18 03:58:24.324 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 605
17-03-18 03:58:24.324 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 605
17-03-18 03:58:24.334 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:58:24.334 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:58:24.334 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-18 03:58:24.514 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37061 798
17-03-18 03:58:24.664 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning grn on 948
17-03-18 03:58:24.724 -07 000000479 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 392 ms.
17-03-18 03:58:24.724 -07 000000479 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-18 03:58:24.724 -07 000000479 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:58:24.724 -07 000000479 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:58:24.724 -07 000000479 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 03:58:24.734 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 398 ms.
17-03-18 03:58:24.734 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 03:58:24.734 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:58:24.734 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:58:24.744 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-18 03:58:24.864 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1147
17-03-18 03:58:24.864 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1147
17-03-18 03:58:24.864 -07 000000479 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:58:24.864 -07 000000479 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:58:24.864 -07 000000479 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-18 03:58:24.874 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1147
17-03-18 03:58:24.874 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1147
17-03-18 03:58:24.874 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:58:24.874 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:58:24.874 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-18 03:58:25.034 -07 000000012 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 119, FrontChillerTemperature: 4.014009,
17-03-18 03:58:25.054 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP 1340
17-03-18 03:58:25.064 -07 000000579 INF: FPGA: Recv CAMDBLSNAP
17-03-18 03:58:25.064 -07 000000610 INF: FPGA: 'CAMDBLSNAP 413 413 199 199 37061 150' command took 2 ms to send, 1340 ms to get response, and 1346 ms overall
17-03-18 03:58:25.064 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 03:58:25.064 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 9 at Y-position 65.71337890625, Z-Position -0.168858274742139. ------
17-03-18 03:58:25.064 -07 000000462 INF: Y Motor: MoveYZ optimized starting. Moving Y to 66.5526 mm, moving Z to -0.17526 mm
17-03-18 03:58:25.064 -07 000000462 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 03:58:25.074 -07 000000579 INF: Z Motor: Entering MoveAbsStepped (DAC = 38285, sync = True, waitForSettling = False)
17-03-18 03:58:25.074 -07 000000579 INF: Z Motor: Moving to -0.175257 mm, started at -0.168858 mm, distance = -6.40 um
17-03-18 03:58:25.074 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 03:58:25.074 -07 000000012 INF: Y Motor: Entering MoveAbsStepped (target = 106484 steps, sync = True, waitForSettling = True)
17-03-18 03:58:25.074 -07 000000012 INF: Y Motor: Moving to 66.5526 mm, started at 65.7134 mm, delta = 0.8392 mm
17-03-18 03:58:25.084 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:58:25.094 -07 000000579 INF: FPGA: Xmit ZDACW 38285\n [Z Motor]
17-03-18 03:58:25.254 -07 000000479 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 384 ms.
17-03-18 03:58:25.254 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 381 ms.
17-03-18 03:58:25.254 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-18 03:58:25.254 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:58:25.254 -07 000000479 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-18 03:58:25.254 -07 000000479 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:58:25.254 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:58:25.264 -07 000000479 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 03:58:25.264 -07 000000479 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-18 03:58:25.264 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-18 03:58:25.294 -07 000000479 INF: FPGA: Recv FOCMRRCUR 
17-03-18 03:58:25.294 -07 000000479 INF: FPGA: Recv YRDPOS 134581
17-03-18 03:58:25.294 -07 000000479 INF: FPGA: Recv ZDACW
17-03-18 03:58:25.294 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 208 ms to get response, and 226 ms overall
17-03-18 03:58:25.294 -07 000000012 INF: Y Motor: Encoder = 134581 = motor step 105141.4 = 65.7134 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:58:25.294 -07 000000012 INF: Y Motor: Last commanded position = 65.7226 mm (105156.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 03:58:25.294 -07 000000012 INF: Y Motor: Moving 1343 steps-19
17-03-18 03:58:25.294 -07 000000012 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 03:58:25.294 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 218 ms to get response, and 230 ms overall
17-03-18 03:58:25.294 -07 000000579 INF: FPGA: 'ZDACW 38285' command took 0 ms to send, 198 ms to get response, and 228 ms overall
17-03-18 03:58:25.304 -07 000000579 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:58:25.304 -07 000000479 INF: FPGA: Recv ZDACR 38285
17-03-18 03:58:25.314 -07 000000579 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:58:25.314 -07 000000579 INF: Z Motor: MoveAbsStepped took 239 ms (did NOT wait for settling yet))
17-03-18 03:58:25.314 -07 000000502 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 03:58:25.514 -07 000000479 INF: FPGA: Recv FOCMRRFOC
17-03-18 03:58:25.514 -07 000000502 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 213 ms overall
17-03-18 03:58:25.674 -07 000000579 INF: FPGA: Recv YMVTILE
17-03-18 03:58:25.674 -07 000000012 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 377 ms to get response, and 378 ms overall
17-03-18 03:58:25.734 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:58:25.734 -07 000000502 INF: FPGA: Recv YRDPOS 136270
17-03-18 03:58:25.744 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-18 03:58:25.744 -07 000000012 INF: Y Motor: Encoder = 136270 = motor step 106460.9 = 66.5381 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:58:25.744 -07 000000012 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-18 03:58:25.744 -07 000000012 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 378 ms, distance = 0.839 mm, average velocity = 2.220 mm/sec
17-03-18 03:58:26.624 -07 000000579 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 03:58:26.624 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 118. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1701, R2=1769, Total=3470. Warn if over 250 bubbles per interval.
17-03-18 03:58:26.694 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:58:26.694 -07 000000579 INF: FPGA: Recv YRDPOS 136270
17-03-18 03:58:26.704 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:58:26.704 -07 000000012 INF: Y Motor: Encoder = 136270 = motor step 106460.9 = 66.5381 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:58:26.734 -07 000000012 INF: Y Motor: After move to 66.552605, error = -0.014519, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 03:58:26.734 -07 000000012 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 03:58:26.734 -07 000000012 INF: Y Motor: Moved to 66.5381 after 1662 ms (table move)
17-03-18 03:58:26.734 -07 000000462 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175257 mm (DAC = 38285)
17-03-18 03:58:26.734 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:26.744 -07 000000585 INF: FPGA: Recv ZSGSRD 36579
17-03-18 03:58:26.744 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 03:58:26.744 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:26.744 -07 000000618 INF: FPGA: Recv ZSGSRD 36567
17-03-18 03:58:26.754 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:26.754 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:26.754 -07 000000502 INF: FPGA: Recv ZSGSRD 36574
17-03-18 03:58:26.764 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:26.764 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:26.764 -07 000000012 INF: FPGA: Recv ZSGSRD 36577
17-03-18 03:58:26.774 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:26.774 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:26.774 -07 000000512 INF: FPGA: Recv ZSGSRD 36572
17-03-18 03:58:26.784 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:26.784 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:26.784 -07 000000579 INF: FPGA: Recv ZSGSRD 36579
17-03-18 03:58:26.794 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:26.794 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:26.794 -07 000000512 INF: FPGA: Recv ZSGSRD 36568
17-03-18 03:58:26.804 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:26.804 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:26.804 -07 000000579 INF: FPGA: Recv ZSGSRD 36567
17-03-18 03:58:26.814 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:26.814 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:26.814 -07 000000012 INF: FPGA: Recv ZSGSRD 36573
17-03-18 03:58:26.824 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:26.824 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:26.824 -07 000000479 INF: FPGA: Recv ZSGSRD 36569
17-03-18 03:58:26.834 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:26.834 -07 000000462 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:58:26.834 -07 000000012 INF: FPGA: Recv ZPIEZORD 32637
17-03-18 03:58:26.844 -07 000000462 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:26.844 -07 000000462 INF: Z Motor: Piezo is near 49.7 V (nominally 0 to 100 V), expect near 58.4 V, since DAC is at 5.842 V. Piezo Error = -8.7 V.
17-03-18 03:58:26.844 -07 000000462 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.3 um, Read 10 ADC samples: Avg = 36572 (-174.4 uncal um), Error = 0.9 uncal um, Median = 36572 (-174.4 uncal um), StdDev = 5 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 36567 (-174.4 uncal um), Max = 36579 (-174.4 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 03:58:26.844 -07 000000462 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36572, posNoise = 7, negNoise = 5
17-03-18 03:58:26.844 -07 000000462 INF: Z Motor: After move to -0.175257, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:58:26.844 -07 000000462 INF: Z Motor: Settle wait time = 1667 ms, measure time = 103 ms (allowed 150 ms), total time = 1770 ms
17-03-18 03:58:26.844 -07 000000462 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-18 03:58:26.894 -07 000000462 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1822 ms
17-03-18 03:58:26.894 -07 000000462 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 03:58:26.894 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:58:26.894 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:58:26.894 -07 000000479 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:58:26.894 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:58:26.894 -07 000000585 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 03:58:26.894 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:58:26.904 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 03:58:26.904 -07 000000585 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 03:58:26.904 -07 000000585 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 03:58:26.904 -07 000000585 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 03:58:26.914 -07 000000585 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 03:58:26.914 -07 000000585 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-18 03:58:26.914 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 03:58:26.954 -07 000000479 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 03:58:27.254 -07 000000512 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 03:58:27.254 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 03:58:27.264 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 03:58:27.264 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2404584808, 0x0, 559484976) start.
17-03-18 03:58:27.294 -07 000000479 INF: FPGA: Recv @CAMSNAP 380
17-03-18 03:58:27.294 -07 000000585 INF: FPGA: Recv CAMSNAP
17-03-18 03:58:27.294 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 379 ms to get response, and 384 ms overall
17-03-18 03:58:27.384 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2404584808, 0x0, 559484976) end. Duration was 120 ms.
17-03-18 03:58:27.384 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:58:27.384 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 03:58:27.384 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 122 ms.
17-03-18 03:58:27.394 -07 000000579 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 03:58:27.394 -07 000000479 INF: Autofocus start
17-03-18 03:58:27.394 -07 000000479 INF: MeasureProfile start
17-03-18 03:58:27.394 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-18 03:58:27.404 -07 000000579 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 03:58:27.404 -07 000000579 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 03:58:27.404 -07 000000479 INF: MeasureProfile done
17-03-18 03:58:27.404 -07 000000479 INF: X=48  Z correction [um]=0.1739867
17-03-18 03:58:27.404 -07 000000479 INF: Autofocus finished
17-03-18 03:58:27.604 -07 000000512 INF: FPGA: Recv FOCMRRIMG
17-03-18 03:58:27.604 -07 000000579 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 03:58:27.604 -07 000000610 INF: ------------ Scan Snapping tile 9 at Y-position 66.5380859375, Z-position -0.175269638459617. ----------
17-03-18 03:58:27.604 -07 000000610 INF: Cycle	119	Tile	9	Exposure Settings		A	413	G	199	T	199	C	413
17-03-18 03:58:27.614 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36836, sync = True, waitForSettling = True)
17-03-18 03:58:27.614 -07 000000610 INF: Z Motor: Moving to -0.168624 mm, started at -0.175270 mm, distance = 6.65 um
17-03-18 03:58:27.614 -07 000000610 INF: FPGA: Xmit ZDACW 36836\n [Z Motor]
17-03-18 03:58:27.614 -07 000000512 INF: FPGA: Recv ZDACW
17-03-18 03:58:27.624 -07 000000610 INF: FPGA: 'ZDACW 36836' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:27.624 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:58:27.624 -07 000000585 INF: FPGA: Recv ZDACR 36836
17-03-18 03:58:27.634 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:27.634 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 03:58:27.784 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:27.784 -07 000000579 INF: FPGA: Recv ZSGSRD 35541
17-03-18 03:58:27.794 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:58:27.794 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:27.794 -07 000000502 INF: FPGA: Recv ZSGSRD 35544
17-03-18 03:58:27.804 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:27.804 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:27.804 -07 000000479 INF: FPGA: Recv ZSGSRD 35542
17-03-18 03:58:27.814 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:27.814 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:27.814 -07 000000012 INF: FPGA: Recv ZSGSRD 35533
17-03-18 03:58:27.824 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:27.824 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:27.824 -07 000000512 INF: FPGA: Recv ZSGSRD 35537
17-03-18 03:58:27.834 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:27.834 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:27.834 -07 000000012 INF: FPGA: Recv ZSGSRD 35539
17-03-18 03:58:27.844 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:27.844 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:27.844 -07 000000579 INF: FPGA: Recv ZSGSRD 35540
17-03-18 03:58:27.854 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 03:58:27.854 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:27.854 -07 000000512 INF: FPGA: Recv ZSGSRD 35537
17-03-18 03:58:27.864 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:27.864 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:27.864 -07 000000012 INF: FPGA: Recv ZSGSRD 35540
17-03-18 03:58:27.874 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:27.874 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:27.874 -07 000000479 INF: FPGA: Recv ZSGSRD 35543
17-03-18 03:58:27.884 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:27.884 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:58:27.884 -07 000000502 INF: FPGA: Recv ZPIEZORD 31245
17-03-18 03:58:27.894 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:27.894 -07 000000610 INF: Z Motor: Piezo is near 46.7 V (nominally 0 to 100 V), expect near 56.2 V, since DAC is at 5.621 V. Piezo Error = -9.5 V.
17-03-18 03:58:27.894 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.6 um, Read 10 ADC samples: Avg = 35540 (-167.8 uncal um), Error = 0.9 uncal um, Median = 35540 (-167.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35533 (-167.7 uncal um), Max = 35544 (-167.8 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 03:58:27.894 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35540, posNoise = 4, negNoise = 7
17-03-18 03:58:27.894 -07 000000610 INF: Z Motor: After move to -0.168624, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:58:27.894 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 03:58:27.894 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:58:27.894 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:58:27.894 -07 000000479 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:58:27.894 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:58:27.894 -07 000000012 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 03:58:27.894 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:58:27.894 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 03:58:27.894 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 03:58:27.894 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 03:58:27.894 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 03:58:27.894 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 03:58:27.894 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 03:58:27.904 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 03:58:27.904 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 03:58:27.904 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 03:58:27.904 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 03:58:27.914 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 03:58:27.914 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 03:58:27.914 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 03:58:27.914 -07 000000012 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 03:58:27.914 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 413 413 199 199 37013 150\n [Camera]
17-03-18 03:58:28.114 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 03:58:28.524 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 605
17-03-18 03:58:28.524 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 605
17-03-18 03:58:28.524 -07 000000479 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:58:28.524 -07 000000479 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:58:28.524 -07 000000479 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-18 03:58:28.534 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 605
17-03-18 03:58:28.534 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 605
17-03-18 03:58:28.534 -07 000000585 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:58:28.534 -07 000000585 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:58:28.534 -07 000000585 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-18 03:58:28.724 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37013 798
17-03-18 03:58:28.864 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning grn on 948
17-03-18 03:58:28.924 -07 000000479 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 397 ms.
17-03-18 03:58:28.924 -07 000000479 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 03:58:28.924 -07 000000479 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:58:28.934 -07 000000585 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 398 ms.
17-03-18 03:58:28.934 -07 000000479 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:58:28.934 -07 000000479 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 03:58:28.934 -07 000000585 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 03:58:28.934 -07 000000585 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:58:28.934 -07 000000585 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:58:28.944 -07 000000585 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-18 03:58:29.064 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1147
17-03-18 03:58:29.064 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1147
17-03-18 03:58:29.074 -07 000000479 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:58:29.074 -07 000000479 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:58:29.074 -07 000000479 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) start.
17-03-18 03:58:29.074 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1147
17-03-18 03:58:29.074 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1147
17-03-18 03:58:29.074 -07 000000585 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:58:29.074 -07 000000585 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:58:29.074 -07 000000585 INF: Camera: sBCa_ReadImage(785074704, 2486767776, 0x0, 418435064) start.
17-03-18 03:58:29.264 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP 1340
17-03-18 03:58:29.264 -07 000000012 INF: FPGA: Recv CAMDBLSNAP
17-03-18 03:58:29.264 -07 000000610 INF: FPGA: 'CAMDBLSNAP 413 413 199 199 37013 150' command took 2 ms to send, 1341 ms to get response, and 1347 ms overall
17-03-18 03:58:29.264 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 03:58:29.264 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 10 at Y-position 66.5380859375, Z-Position -0.168639851529319. ------
17-03-18 03:58:29.264 -07 000000012 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 03:58:29.264 -07 000000579 INF: Y Motor: MoveYZ optimized starting. Moving Y to 67.3826 mm, moving Z to -0.17547 mm
17-03-18 03:58:29.264 -07 000000579 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 03:58:29.274 -07 000000512 INF: FPGA: Recv FOCMRRCUR 
17-03-18 03:58:29.274 -07 000000012 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 03:58:29.274 -07 000000462 INF: Y Motor: Entering MoveAbsStepped (target = 107812 steps, sync = True, waitForSettling = True)
17-03-18 03:58:29.274 -07 000000462 INF: Y Motor: Moving to 67.3826 mm, started at 66.5381 mm, delta = 0.8445 mm
17-03-18 03:58:29.274 -07 000000012 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 03:58:29.274 -07 000000618 INF: Z Motor: Entering MoveAbsStepped (DAC = 38331, sync = True, waitForSettling = False)
17-03-18 03:58:29.274 -07 000000618 INF: Z Motor: Moving to -0.175468 mm, started at -0.168640 mm, distance = -6.83 um
17-03-18 03:58:29.284 -07 000000618 INF: FPGA: Xmit ZDACW 38331\n [Z Motor]
17-03-18 03:58:29.284 -07 000000467 INF: FPGA: Recv ZDACW
17-03-18 03:58:29.294 -07 000000618 INF: FPGA: 'ZDACW 38331' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-18 03:58:29.294 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:58:29.294 -07 000000502 INF: FPGA: Recv YRDPOS 136271
17-03-18 03:58:29.304 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-18 03:58:29.304 -07 000000462 INF: Y Motor: Encoder = 136271 = motor step 106461.7 = 66.5386 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:58:29.304 -07 000000618 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:58:29.304 -07 000000467 INF: FPGA: Recv ZDACR 38331
17-03-18 03:58:29.304 -07 000000462 INF: Y Motor: Last commanded position = 66.5526 mm (106484.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 03:58:29.304 -07 000000462 INF: Y Motor: Moving 1350 steps-30
17-03-18 03:58:29.314 -07 000000618 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 03:58:29.314 -07 000000618 INF: Z Motor: MoveAbsStepped took 36 ms (did NOT wait for settling yet))
17-03-18 03:58:29.314 -07 000000462 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 03:58:29.474 -07 000000479 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) end. Duration was 403 ms.
17-03-18 03:58:29.474 -07 000000479 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 03:58:29.474 -07 000000479 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:58:29.474 -07 000000585 INF: Camera: sBCa_ReadImage(785074704, 2486767776, 0x0, 418435064) end. Duration was 401 ms.
17-03-18 03:58:29.474 -07 000000585 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-18 03:58:29.474 -07 000000585 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:58:29.474 -07 000000591 INF: FPGA: Recv FOCMRRFOC
17-03-18 03:58:29.474 -07 000000012 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 195 ms to get response, and 202 ms overall
17-03-18 03:58:29.474 -07 000000585 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 03:58:29.484 -07 000000479 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 03:58:29.484 -07 000000479 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 412 ms.
17-03-18 03:58:29.484 -07 000000585 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-18 03:58:29.684 -07 000000585 INF: FPGA: Recv YMVTILE
17-03-18 03:58:29.684 -07 000000462 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 383 ms overall
17-03-18 03:58:29.734 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:58:29.734 -07 000000618 INF: FPGA: Recv YRDPOS 137976
17-03-18 03:58:29.744 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 03:58:29.744 -07 000000462 INF: Y Motor: Encoder = 137976 = motor step 107793.8 = 67.3711 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:58:29.744 -07 000000462 INF: Y Motor: Position error before settling (table move) = -24 encoder counts (-0.012 mm)
17-03-18 03:58:29.744 -07 000000462 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 384 ms, distance = 0.845 mm, average velocity = 2.199 mm/sec
17-03-18 03:58:30.394 -07 000000618 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 119, FrontChillerTemperature: 4.012614,
17-03-18 03:58:30.694 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:58:30.694 -07 000000561 INF: FPGA: Recv YRDPOS 137976
17-03-18 03:58:30.704 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:30.704 -07 000000462 INF: Y Motor: Encoder = 137976 = motor step 107793.8 = 67.3711 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:58:30.734 -07 000000462 INF: Y Motor: After move to 67.382607, error = -0.011513, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 03:58:30.734 -07 000000462 INF: Y Motor: Position error after settling (table move) = -24 encoder counts (-0.012 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 03:58:30.734 -07 000000462 INF: Y Motor: Moved to 67.3711 after 1457 ms (table move)
17-03-18 03:58:30.734 -07 000000579 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175468 mm (DAC = 38331)
17-03-18 03:58:30.744 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:30.744 -07 000000618 INF: FPGA: Recv ZSGSRD 36606
17-03-18 03:58:30.754 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-18 03:58:30.754 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:30.754 -07 000000512 INF: FPGA: Recv ZSGSRD 36609
17-03-18 03:58:30.764 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:30.764 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:30.764 -07 000000561 INF: FPGA: Recv ZSGSRD 36601
17-03-18 03:58:30.774 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:30.774 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:30.774 -07 000000561 INF: FPGA: Recv ZSGSRD 36600
17-03-18 03:58:30.784 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:30.784 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:30.784 -07 000000512 INF: FPGA: Recv ZSGSRD 36605
17-03-18 03:58:30.794 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:30.794 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:30.794 -07 000000462 INF: FPGA: Recv ZSGSRD 36607
17-03-18 03:58:30.804 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:30.804 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:30.804 -07 000000561 INF: FPGA: Recv ZSGSRD 36602
17-03-18 03:58:30.814 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:30.814 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:30.814 -07 000000462 INF: FPGA: Recv ZSGSRD 36606
17-03-18 03:58:30.824 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:30.824 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:30.824 -07 000000512 INF: FPGA: Recv ZSGSRD 36613
17-03-18 03:58:30.834 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:30.834 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:30.834 -07 000000618 INF: FPGA: Recv ZSGSRD 36606
17-03-18 03:58:30.844 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:30.844 -07 000000579 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:58:30.844 -07 000000561 INF: FPGA: Recv ZPIEZORD 32691
17-03-18 03:58:30.854 -07 000000579 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:30.854 -07 000000579 INF: Z Motor: Piezo is near 49.8 V (nominally 0 to 100 V), expect near 58.5 V, since DAC is at 5.849 V. Piezo Error = -8.7 V.
17-03-18 03:58:30.854 -07 000000579 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.5 um, Read 10 ADC samples: Avg = 36606 (-174.6 uncal um), Error = 0.9 uncal um, Median = 36606 (-174.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 36600 (-174.6 uncal um), Max = 36613 (-174.6 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 03:58:30.854 -07 000000579 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36606, posNoise = 7, negNoise = 6
17-03-18 03:58:30.854 -07 000000579 INF: Z Motor: After move to -0.175468, error = -0.000020, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:58:30.854 -07 000000579 INF: Z Motor: Settle wait time = 1460 ms, measure time = 117 ms (allowed 150 ms), total time = 1577 ms
17-03-18 03:58:30.854 -07 000000579 INF: Z Motor: Waiting extra 33 ms after reading position to reach expected total of 150 ms
17-03-18 03:58:30.894 -07 000000579 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1620 ms
17-03-18 03:58:30.894 -07 000000579 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 03:58:30.894 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:58:30.894 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:58:30.904 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:58:30.904 -07 000000561 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 03:58:30.904 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:58:30.904 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:58:30.904 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 03:58:30.904 -07 000000561 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 03:58:30.904 -07 000000561 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 03:58:30.904 -07 000000561 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 03:58:30.914 -07 000000561 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 03:58:30.914 -07 000000561 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 03:58:30.924 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 03:58:30.964 -07 000000462 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 03:58:31.264 -07 000000512 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 03:58:31.264 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 03:58:31.264 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 03:58:31.264 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1201016592, 0x0, 559484976) start.
17-03-18 03:58:31.304 -07 000000512 INF: FPGA: Recv @CAMSNAP 380
17-03-18 03:58:31.304 -07 000000480 INF: FPGA: Recv CAMSNAP
17-03-18 03:58:31.304 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 375 ms to get response, and 385 ms overall
17-03-18 03:58:31.384 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1201016592, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 03:58:31.384 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:58:31.384 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 03:58:31.384 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 03:58:31.404 -07 000000561 INF: Autofocus start
17-03-18 03:58:31.404 -07 000000561 INF: MeasureProfile start
17-03-18 03:58:31.404 -07 000000618 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 03:58:31.404 -07 000000512 INF: FPGA: Recv FOCMRRCUR 
17-03-18 03:58:31.414 -07 000000618 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 03:58:31.414 -07 000000618 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 03:58:31.414 -07 000000561 INF: MeasureProfile done
17-03-18 03:58:31.414 -07 000000561 INF: X=16  Z correction [um]=0.01042744
17-03-18 03:58:31.414 -07 000000561 INF: Autofocus finished
17-03-18 03:58:31.614 -07 000000424 INF: FPGA: Recv FOCMRRIMG
17-03-18 03:58:31.614 -07 000000618 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 03:58:31.614 -07 000000610 INF: ------------ Scan Snapping tile 10 at Y-position 67.37109375, Z-position -0.175488061672437. ----------
17-03-18 03:58:31.614 -07 000000610 INF: Cycle	119	Tile	10	Exposure Settings		A	413	G	199	T	199	C	413
17-03-18 03:58:31.624 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36845, sync = True, waitForSettling = True)
17-03-18 03:58:31.624 -07 000000610 INF: Z Motor: Moving to -0.168666 mm, started at -0.175488 mm, distance = 6.82 um
17-03-18 03:58:31.624 -07 000000610 INF: FPGA: Xmit ZDACW 36845\n [Z Motor]
17-03-18 03:58:31.624 -07 000000590 INF: FPGA: Recv ZDACW
17-03-18 03:58:31.624 -07 000000618 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 03:58:31.624 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 118. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1701, R2=1769, Total=3470. Warn if over 250 bubbles per interval.
17-03-18 03:58:31.634 -07 000000610 INF: FPGA: 'ZDACW 36845' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:31.634 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:58:31.634 -07 000000590 INF: FPGA: Recv ZDACR 36845
17-03-18 03:58:31.644 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:31.644 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 03:58:31.794 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:31.794 -07 000000480 INF: FPGA: Recv ZSGSRD 35549
17-03-18 03:58:31.804 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:31.804 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:31.804 -07 000000590 INF: FPGA: Recv ZSGSRD 35548
17-03-18 03:58:31.814 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:31.814 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:31.814 -07 000000512 INF: FPGA: Recv ZSGSRD 35548
17-03-18 03:58:31.824 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:31.824 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:31.824 -07 000000502 INF: FPGA: Recv ZSGSRD 35543
17-03-18 03:58:31.834 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:31.834 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:31.834 -07 000000512 INF: FPGA: Recv ZSGSRD 35545
17-03-18 03:58:31.844 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:31.844 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:31.844 -07 000000502 INF: FPGA: Recv ZSGSRD 35555
17-03-18 03:58:31.854 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:31.854 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:31.854 -07 000000512 INF: FPGA: Recv ZSGSRD 35539
17-03-18 03:58:31.864 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:31.864 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:31.864 -07 000000502 INF: FPGA: Recv ZSGSRD 35549
17-03-18 03:58:31.874 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:31.874 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:31.874 -07 000000480 INF: FPGA: Recv ZSGSRD 35543
17-03-18 03:58:31.884 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:31.884 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:31.884 -07 000000590 INF: FPGA: Recv ZSGSRD 35542
17-03-18 03:58:31.894 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:31.894 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:58:31.894 -07 000000480 INF: FPGA: Recv ZPIEZORD 31287
17-03-18 03:58:31.904 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:31.904 -07 000000610 INF: Z Motor: Piezo is near 46.8 V (nominally 0 to 100 V), expect near 56.2 V, since DAC is at 5.622 V. Piezo Error = -9.4 V.
17-03-18 03:58:31.904 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.7 um, Read 10 ADC samples: Avg = 35546 (-167.8 uncal um), Error = 0.9 uncal um, Median = 35546 (-167.8 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 35539 (-167.8 uncal um), Max = 35555 (-167.9 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 03:58:31.904 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35546, posNoise = 9, negNoise = 7
17-03-18 03:58:31.904 -07 000000610 INF: Z Motor: After move to -0.168666, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:58:31.904 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 03:58:31.904 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:58:31.904 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:58:31.904 -07 000000467 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:58:31.904 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 03:58:31.904 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:58:31.904 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 03:58:31.904 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 03:58:31.904 -07 000000579 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:58:31.904 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 03:58:31.904 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 03:58:31.904 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 03:58:31.904 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 03:58:31.914 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-18 03:58:31.914 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 03:58:31.914 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 03:58:31.914 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 03:58:31.924 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 03:58:31.924 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 03:58:31.924 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 03:58:31.924 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 03:58:31.924 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 413 413 199 199 37022 150\n [Camera]
17-03-18 03:58:32.124 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 03:58:32.534 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 605
17-03-18 03:58:32.534 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 605
17-03-18 03:58:32.534 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:58:32.534 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:58:32.534 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) start.
17-03-18 03:58:32.534 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 605
17-03-18 03:58:32.534 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 605
17-03-18 03:58:32.534 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:58:32.534 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:58:32.534 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) start.
17-03-18 03:58:32.724 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37022 798
17-03-18 03:58:32.874 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP turning grn on 948
17-03-18 03:58:32.934 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) end. Duration was 400 ms.
17-03-18 03:58:32.934 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 03:58:32.934 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:58:32.944 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:58:32.944 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 03:58:32.944 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) end. Duration was 403 ms.
17-03-18 03:58:32.944 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-18 03:58:32.944 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:58:32.944 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 03:58:32.954 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-18 03:58:33.074 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1147
17-03-18 03:58:33.074 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1147
17-03-18 03:58:33.074 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:58:33.074 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:58:33.074 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 2620985504, 0x0, 391868352) start.
17-03-18 03:58:33.084 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1147
17-03-18 03:58:33.084 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1147
17-03-18 03:58:33.084 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:58:33.084 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:58:33.084 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2684358704, 0x0, 418435064) start.
17-03-18 03:58:33.264 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP 1339
17-03-18 03:58:33.264 -07 000000512 INF: FPGA: Recv CAMDBLSNAP
17-03-18 03:58:33.264 -07 000000610 INF: FPGA: 'CAMDBLSNAP 413 413 199 199 37022 150' command took 2 ms to send, 1339 ms to get response, and 1346 ms overall
17-03-18 03:58:33.274 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 03:58:33.274 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 11 at Y-position 67.37109375, Z-Position -0.16867839680217. ------
17-03-18 03:58:33.274 -07 000000590 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 03:58:33.274 -07 000000579 INF: Y Motor: MoveYZ optimized starting. Moving Y to 68.2126 mm, moving Z to -0.17498 mm
17-03-18 03:58:33.274 -07 000000579 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 03:58:33.274 -07 000000561 INF: Y Motor: Entering MoveAbsStepped (target = 109140 steps, sync = True, waitForSettling = True)
17-03-18 03:58:33.274 -07 000000561 INF: Y Motor: Moving to 68.2126 mm, started at 67.3711 mm, delta = 0.8415 mm
17-03-18 03:58:33.274 -07 000000479 INF: Z Motor: Entering MoveAbsStepped (DAC = 38224, sync = True, waitForSettling = False)
17-03-18 03:58:33.274 -07 000000479 INF: Z Motor: Moving to -0.174978 mm, started at -0.168678 mm, distance = -6.30 um
17-03-18 03:58:33.274 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-18 03:58:33.284 -07 000000479 INF: FPGA: Xmit ZDACW 38224\n [Z Motor]
17-03-18 03:58:33.284 -07 000000590 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 03:58:33.284 -07 000000618 INF: FPGA: Recv ZDACW
17-03-18 03:58:33.294 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:58:33.294 -07 000000479 INF: FPGA: 'ZDACW 38224' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-18 03:58:33.294 -07 000000502 INF: FPGA: Recv YRDPOS 137976
17-03-18 03:58:33.304 -07 000000590 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 03:58:33.304 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-18 03:58:33.304 -07 000000561 INF: Y Motor: Encoder = 137976 = motor step 107793.8 = 67.3711 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:58:33.304 -07 000000561 INF: Y Motor: Last commanded position = 67.3826 mm (107812.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 03:58:33.304 -07 000000561 INF: Y Motor: Moving 1346 steps-24
17-03-18 03:58:33.314 -07 000000479 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:58:33.314 -07 000000467 INF: FPGA: Recv ZDACR 38224
17-03-18 03:58:33.324 -07 000000561 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 03:58:33.324 -07 000000479 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 03:58:33.324 -07 000000479 INF: Z Motor: MoveAbsStepped took 45 ms (did NOT wait for settling yet))
17-03-18 03:58:33.474 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2684358704, 0x0, 418435064) end. Duration was 394 ms.
17-03-18 03:58:33.474 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 03:58:33.474 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:58:33.474 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 2620985504, 0x0, 391868352) end. Duration was 399 ms.
17-03-18 03:58:33.474 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 03:58:33.474 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:58:33.484 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 03:58:33.484 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 03:58:33.484 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-18 03:58:33.494 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 408 ms.
17-03-18 03:58:33.504 -07 000000479 INF: FPGA: Recv FOCMRRFOC
17-03-18 03:58:33.504 -07 000000590 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 03:58:33.704 -07 000000502 INF: FPGA: Recv YMVTILE
17-03-18 03:58:33.704 -07 000000561 INF: FPGA: 'YMVTILE 1327' command took 3 ms to send, 370 ms to get response, and 400 ms overall
17-03-18 03:58:33.744 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:58:33.754 -07 000000512 INF: FPGA: Recv YRDPOS 139682
17-03-18 03:58:33.764 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:58:33.764 -07 000000561 INF: Y Motor: Encoder = 139682 = motor step 109126.6 = 68.2041 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:58:33.764 -07 000000561 INF: Y Motor: Position error before settling (table move) = -17 encoder counts (-0.008 mm)
17-03-18 03:58:33.764 -07 000000561 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 400 ms, distance = 0.842 mm, average velocity = 2.104 mm/sec
17-03-18 03:58:34.714 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:58:34.714 -07 000000618 INF: FPGA: Recv YRDPOS 139683
17-03-18 03:58:34.724 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:34.724 -07 000000561 INF: Y Motor: Encoder = 139683 = motor step 109127.3 = 68.2046 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:58:34.744 -07 000000561 INF: Y Motor: After move to 68.212608, error = -0.008018, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 03:58:34.744 -07 000000561 INF: Y Motor: Position error after settling (table move) = -16 encoder counts (-0.008 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 03:58:34.744 -07 000000561 INF: Y Motor: Moved to 68.2046 after 1472 ms (table move)
17-03-18 03:58:34.754 -07 000000579 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174978 mm (DAC = 38224)
17-03-18 03:58:34.754 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:34.754 -07 000000618 INF: FPGA: Recv ZSGSRD 36530
17-03-18 03:58:34.764 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 03:58:34.764 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:34.764 -07 000000618 INF: FPGA: Recv ZSGSRD 36522
17-03-18 03:58:34.774 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:34.774 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:34.774 -07 000000618 INF: FPGA: Recv ZSGSRD 36527
17-03-18 03:58:34.784 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:34.784 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:34.784 -07 000000561 INF: FPGA: Recv ZSGSRD 36530
17-03-18 03:58:34.794 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:34.794 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:34.794 -07 000000561 INF: FPGA: Recv ZSGSRD 36534
17-03-18 03:58:34.804 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:34.804 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:34.804 -07 000000618 INF: FPGA: Recv ZSGSRD 36530
17-03-18 03:58:34.814 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:34.814 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:34.814 -07 000000618 INF: FPGA: Recv ZSGSRD 36527
17-03-18 03:58:34.824 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:34.824 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:34.824 -07 000000561 INF: FPGA: Recv ZSGSRD 36524
17-03-18 03:58:34.834 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:34.834 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:34.834 -07 000000618 INF: FPGA: Recv ZSGSRD 36525
17-03-18 03:58:34.844 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:34.844 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:34.844 -07 000000561 INF: FPGA: Recv ZSGSRD 36523
17-03-18 03:58:34.854 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:34.854 -07 000000579 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:58:34.854 -07 000000618 INF: FPGA: Recv ZPIEZORD 32584
17-03-18 03:58:34.864 -07 000000579 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:34.864 -07 000000579 INF: Z Motor: Piezo is near 49.6 V (nominally 0 to 100 V), expect near 58.3 V, since DAC is at 5.833 V. Piezo Error = -8.7 V.
17-03-18 03:58:34.864 -07 000000579 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.0 um, Read 10 ADC samples: Avg = 36527 (-174.1 uncal um), Error = 0.9 uncal um, Median = 36527 (-174.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 36522 (-174.1 uncal um), Max = 36534 (-174.1 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 03:58:34.864 -07 000000579 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36527, posNoise = 7, negNoise = 5
17-03-18 03:58:34.864 -07 000000579 INF: Z Motor: After move to -0.174978, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:58:34.864 -07 000000579 INF: Z Motor: Settle wait time = 1475 ms, measure time = 107 ms (allowed 150 ms), total time = 1582 ms
17-03-18 03:58:34.864 -07 000000579 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-18 03:58:34.914 -07 000000579 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1635 ms
17-03-18 03:58:34.914 -07 000000579 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 03:58:34.914 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:58:34.914 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:58:34.914 -07 000000579 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:58:34.914 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 03:58:34.914 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:58:34.914 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:58:34.924 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 03:58:34.924 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 03:58:34.924 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 03:58:34.924 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 03:58:34.924 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 03:58:34.924 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-18 03:58:34.934 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 03:58:34.974 -07 000000579 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 03:58:35.274 -07 000000579 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 03:58:35.274 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 03:58:35.274 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 03:58:35.274 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2253754584, 0x0, 559484976) start.
17-03-18 03:58:35.314 -07 000000579 INF: FPGA: Recv @CAMSNAP 380
17-03-18 03:58:35.314 -07 000000618 INF: FPGA: Recv CAMSNAP
17-03-18 03:58:35.314 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 03:58:35.394 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2253754584, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 03:58:35.394 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:58:35.394 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 03:58:35.394 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 03:58:35.414 -07 000000579 INF: Autofocus start
17-03-18 03:58:35.414 -07 000000579 INF: MeasureProfile start
17-03-18 03:58:35.414 -07 000000561 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 03:58:35.414 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-18 03:58:35.424 -07 000000561 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 03:58:35.424 -07 000000561 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 03:58:35.424 -07 000000579 INF: MeasureProfile done
17-03-18 03:58:35.424 -07 000000579 INF: X=0  Z correction [um]=-0.0713522
17-03-18 03:58:35.424 -07 000000579 INF: Autofocus finished
17-03-18 03:58:35.624 -07 000000579 INF: FPGA: Recv FOCMRRIMG
17-03-18 03:58:35.624 -07 000000561 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 03:58:35.624 -07 000000610 INF: ------------ Scan Snapping tile 11 at Y-position 68.20458984375, Z-position -0.174980548913237. ----------
17-03-18 03:58:35.624 -07 000000610 INF: Cycle	119	Tile	11	Exposure Settings		A	413	G	199	T	199	C	413
17-03-18 03:58:35.634 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36721, sync = True, waitForSettling = True)
17-03-18 03:58:35.634 -07 000000610 INF: Z Motor: Moving to -0.168098 mm, started at -0.174981 mm, distance = 6.88 um
17-03-18 03:58:35.634 -07 000000610 INF: FPGA: Xmit ZDACW 36721\n [Z Motor]
17-03-18 03:58:35.634 -07 000000561 INF: FPGA: Recv ZDACW
17-03-18 03:58:35.644 -07 000000610 INF: FPGA: 'ZDACW 36721' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:35.644 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:58:35.644 -07 000000591 INF: FPGA: Recv ZDACR 36721
17-03-18 03:58:35.654 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:35.654 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 03:58:35.754 -07 000000012 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 119, FrontChillerTemperature: 4.011254,
17-03-18 03:58:35.804 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:35.804 -07 000000618 INF: FPGA: Recv ZSGSRD 35454
17-03-18 03:58:35.814 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:58:35.814 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:35.814 -07 000000012 INF: FPGA: Recv ZSGSRD 35456
17-03-18 03:58:35.824 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:35.824 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:35.824 -07 000000579 INF: FPGA: Recv ZSGSRD 35459
17-03-18 03:58:35.834 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:35.834 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:35.834 -07 000000012 INF: FPGA: Recv ZSGSRD 35462
17-03-18 03:58:35.844 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:35.844 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:35.844 -07 000000502 INF: FPGA: Recv ZSGSRD 35458
17-03-18 03:58:35.854 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:35.854 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:35.854 -07 000000012 INF: FPGA: Recv ZSGSRD 35460
17-03-18 03:58:35.864 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:35.864 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:35.864 -07 000000561 INF: FPGA: Recv ZSGSRD 35456
17-03-18 03:58:35.874 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:35.874 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:35.874 -07 000000012 INF: FPGA: Recv ZSGSRD 35455
17-03-18 03:58:35.884 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:35.884 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:35.884 -07 000000502 INF: FPGA: Recv ZSGSRD 35459
17-03-18 03:58:35.894 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:35.894 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:35.894 -07 000000579 INF: FPGA: Recv ZSGSRD 35464
17-03-18 03:58:35.904 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:35.904 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:58:35.904 -07 000000591 INF: FPGA: Recv ZPIEZORD 31173
17-03-18 03:58:35.914 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:35.914 -07 000000610 INF: Z Motor: Piezo is near 46.6 V (nominally 0 to 100 V), expect near 56.0 V, since DAC is at 5.603 V. Piezo Error = -9.4 V.
17-03-18 03:58:35.914 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.1 um, Read 10 ADC samples: Avg = 35458 (-167.2 uncal um), Error = 0.9 uncal um, Median = 35458 (-167.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35454 (-167.2 uncal um), Max = 35464 (-167.3 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 03:58:35.914 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35458, posNoise = 6, negNoise = 4
17-03-18 03:58:35.914 -07 000000610 INF: Z Motor: After move to -0.168098, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:58:35.914 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 03:58:35.914 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:58:35.914 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:58:35.914 -07 000000579 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:58:35.914 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:58:35.914 -07 000000012 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 03:58:35.914 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:58:35.914 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 03:58:35.914 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 03:58:35.914 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 03:58:35.914 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 03:58:35.914 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 03:58:35.914 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 03:58:35.924 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 03:58:35.924 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 03:58:35.924 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 03:58:35.924 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 03:58:35.924 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 03:58:35.924 -07 000000012 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 03:58:35.934 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-18 03:58:35.934 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 03:58:35.934 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 413 413 199 199 36898 150\n [Camera]
17-03-18 03:58:36.134 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 03:58:36.544 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 605
17-03-18 03:58:36.544 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 605
17-03-18 03:58:36.544 -07 000000479 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:58:36.544 -07 000000479 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:58:36.544 -07 000000479 INF: Camera: sBCa_ReadImage(785074288, 2719780968, 0x0, 391868352) start.
17-03-18 03:58:36.554 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 605
17-03-18 03:58:36.554 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 605
17-03-18 03:58:36.554 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:58:36.554 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:58:36.554 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2755203232, 0x0, 418435064) start.
17-03-18 03:58:36.624 -07 000000591 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 03:58:36.624 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 118. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1701, R2=1769, Total=3470. Warn if over 250 bubbles per interval.
17-03-18 03:58:36.744 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36898 798
17-03-18 03:58:36.884 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP turning grn on 948
17-03-18 03:58:36.944 -07 000000479 INF: Camera: sBCa_ReadImage(785074288, 2719780968, 0x0, 391868352) end. Duration was 396 ms.
17-03-18 03:58:36.944 -07 000000479 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 03:58:36.944 -07 000000479 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:58:36.944 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2755203232, 0x0, 418435064) end. Duration was 394 ms.
17-03-18 03:58:36.944 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-18 03:58:36.944 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:58:36.944 -07 000000479 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:58:36.944 -07 000000479 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 03:58:36.954 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:58:36.954 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 405 ms.
17-03-18 03:58:37.084 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1147
17-03-18 03:58:37.084 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1147
17-03-18 03:58:37.094 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:58:37.234 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1147
17-03-18 03:58:37.234 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1147
17-03-18 03:58:37.234 -07 000000479 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:58:37.234 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:58:37.234 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 2818576432, 0x0, 391868352) start.
17-03-18 03:58:37.234 -07 000000479 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:58:37.234 -07 000000479 INF: Camera: sBCa_ReadImage(785074704, 2298580584, 0x0, 418435064) start.
17-03-18 03:58:37.284 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP 1339
17-03-18 03:58:37.284 -07 000000012 INF: FPGA: Recv CAMDBLSNAP
17-03-18 03:58:37.284 -07 000000610 INF: FPGA: 'CAMDBLSNAP 413 413 199 199 36898 150' command took 2 ms to send, 1341 ms to get response, and 1346 ms overall
17-03-18 03:58:37.284 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 03:58:37.284 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 12 at Y-position 68.20458984375, Z-Position -0.168113066133695. ------
17-03-18 03:58:37.284 -07 000000467 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 03:58:37.284 -07 000000502 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.0426 mm, moving Z to -0.17477 mm
17-03-18 03:58:37.284 -07 000000502 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 03:58:37.284 -07 000000579 INF: Z Motor: Entering MoveAbsStepped (DAC = 38178, sync = True, waitForSettling = False)
17-03-18 03:58:37.284 -07 000000579 INF: Z Motor: Moving to -0.174768 mm, started at -0.168113 mm, distance = -6.65 um
17-03-18 03:58:37.284 -07 000000591 INF: Y Motor: Entering MoveAbsStepped (target = 110468 steps, sync = True, waitForSettling = True)
17-03-18 03:58:37.284 -07 000000591 INF: Y Motor: Moving to 69.0426 mm, started at 68.2046 mm, delta = 0.8380 mm
17-03-18 03:58:37.294 -07 000000579 INF: FPGA: Xmit ZDACW 38178\n [Z Motor]
17-03-18 03:58:37.304 -07 000000591 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:58:37.634 -07 000000479 INF: Camera: sBCa_ReadImage(785074704, 2298580584, 0x0, 418435064) end. Duration was 395 ms.
17-03-18 03:58:37.634 -07 000000479 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 03:58:37.634 -07 000000479 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:58:37.634 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 2818576432, 0x0, 391868352) end. Duration was 401 ms.
17-03-18 03:58:37.634 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 03:58:37.634 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:58:37.634 -07 000000479 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 03:58:37.644 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 03:58:37.644 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 549 ms.
17-03-18 03:58:37.644 -07 000000479 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-18 03:58:38.324 -07 000000012 INF: FPGA: Recv FOCMRRCUR 
17-03-18 03:58:38.324 -07 000000012 INF: FPGA: Recv ZDACW
17-03-18 03:58:38.324 -07 000000012 INF: FPGA: Recv YRDPOS 139683
17-03-18 03:58:38.324 -07 000000591 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1014 ms to get response, and 1034 ms overall
17-03-18 03:58:38.324 -07 000000591 INF: Y Motor: Encoder = 139683 = motor step 109127.3 = 68.2046 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:58:38.324 -07 000000591 INF: Y Motor: Last commanded position = 68.2126 mm (109140.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 03:58:38.324 -07 000000591 INF: Y Motor: Moving 1341 steps-17
17-03-18 03:58:38.324 -07 000000467 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1032 ms to get response, and 1036 ms overall
17-03-18 03:58:38.324 -07 000000591 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 03:58:38.324 -07 000000579 INF: FPGA: 'ZDACW 38178' command took 0 ms to send, 1024 ms to get response, and 1035 ms overall
17-03-18 03:58:38.334 -07 000000579 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:58:38.334 -07 000000012 INF: FPGA: Recv ZDACR 38178
17-03-18 03:58:38.344 -07 000000467 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 03:58:38.344 -07 000000579 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-18 03:58:38.344 -07 000000579 INF: Z Motor: MoveAbsStepped took 1051 ms (did NOT wait for settling yet))
17-03-18 03:58:38.544 -07 000000579 INF: FPGA: Recv FOCMRRFOC
17-03-18 03:58:38.544 -07 000000467 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 216 ms overall
17-03-18 03:58:38.704 -07 000000012 INF: FPGA: Recv YMVTILE
17-03-18 03:58:38.704 -07 000000591 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 374 ms to get response, and 378 ms overall
17-03-18 03:58:38.754 -07 000000591 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:58:38.754 -07 000000012 INF: FPGA: Recv YRDPOS 141366
17-03-18 03:58:38.764 -07 000000591 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 03:58:38.764 -07 000000591 INF: Y Motor: Encoder = 141366 = motor step 110442.2 = 69.0264 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:58:38.764 -07 000000591 INF: Y Motor: Position error before settling (table move) = -33 encoder counts (-0.016 mm)
17-03-18 03:58:38.764 -07 000000591 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 378 ms, distance = 0.838 mm, average velocity = 2.217 mm/sec
17-03-18 03:58:39.714 -07 000000591 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:58:39.714 -07 000000012 INF: FPGA: Recv YRDPOS 141366
17-03-18 03:58:39.724 -07 000000591 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:58:39.724 -07 000000591 INF: Y Motor: Encoder = 141366 = motor step 110442.2 = 69.0264 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:58:39.754 -07 000000591 INF: Y Motor: After move to 69.042610, error = -0.016243, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 03:58:39.754 -07 000000591 INF: Y Motor: Position error after settling (table move) = -33 encoder counts (-0.016 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 03:58:39.754 -07 000000591 INF: Y Motor: Moved to 69.0264 after 2462 ms (table move)
17-03-18 03:58:39.754 -07 000000502 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174768 mm (DAC = 38178)
17-03-18 03:58:39.754 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:39.754 -07 000000579 INF: FPGA: Recv ZSGSRD 36501
17-03-18 03:58:39.764 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 03:58:39.764 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:39.764 -07 000000467 INF: FPGA: Recv ZSGSRD 36499
17-03-18 03:58:39.774 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:39.774 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:39.774 -07 000000012 INF: FPGA: Recv ZSGSRD 36499
17-03-18 03:58:39.784 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:39.784 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:39.784 -07 000000591 INF: FPGA: Recv ZSGSRD 36491
17-03-18 03:58:39.794 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:39.794 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:39.794 -07 000000467 INF: FPGA: Recv ZSGSRD 36493
17-03-18 03:58:39.804 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:39.804 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:39.804 -07 000000585 INF: FPGA: Recv ZSGSRD 36502
17-03-18 03:58:39.814 -07 000000502 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:39.814 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:39.814 -07 000000467 INF: FPGA: Recv ZSGSRD 36498
17-03-18 03:58:39.824 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:39.824 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:39.824 -07 000000579 INF: FPGA: Recv ZSGSRD 36495
17-03-18 03:58:39.834 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:39.834 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:39.834 -07 000000579 INF: FPGA: Recv ZSGSRD 36497
17-03-18 03:58:39.844 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:39.844 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:39.844 -07 000000579 INF: FPGA: Recv ZSGSRD 36502
17-03-18 03:58:39.854 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:39.854 -07 000000502 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:58:39.854 -07 000000585 INF: FPGA: Recv ZPIEZORD 32552
17-03-18 03:58:39.864 -07 000000502 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:58:39.864 -07 000000502 INF: Z Motor: Piezo is near 49.5 V (nominally 0 to 100 V), expect near 58.3 V, since DAC is at 5.826 V. Piezo Error = -8.7 V.
17-03-18 03:58:39.864 -07 000000502 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.8 um, Read 10 ADC samples: Avg = 36498 (-173.9 uncal um), Error = 0.9 uncal um, Median = 36498 (-173.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 36491 (-173.9 uncal um), Max = 36502 (-173.9 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 03:58:39.864 -07 000000502 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36498, posNoise = 4, negNoise = 7
17-03-18 03:58:39.864 -07 000000502 INF: Z Motor: After move to -0.174768, error = -0.000027, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:58:39.864 -07 000000502 INF: Z Motor: Settle wait time = 2466 ms, measure time = 110 ms (allowed 150 ms), total time = 2576 ms
17-03-18 03:58:39.864 -07 000000502 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-18 03:58:39.904 -07 000000502 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2613 ms
17-03-18 03:58:39.904 -07 000000502 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 03:58:39.904 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:58:39.904 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:58:39.904 -07 000000467 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:58:39.904 -07 000000585 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:58:39.904 -07 000000502 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 03:58:39.904 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:58:39.904 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 03:58:39.904 -07 000000502 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 03:58:39.914 -07 000000502 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 03:58:39.914 -07 000000502 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 03:58:39.924 -07 000000502 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 03:58:39.924 -07 000000502 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 13 ms.
17-03-18 03:58:39.924 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 03:58:39.974 -07 000000591 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 03:58:40.264 -07 000000579 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 03:58:40.264 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 03:58:40.274 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 03:58:40.274 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2334002848, 0x0, 559484976) start.
17-03-18 03:58:40.304 -07 000000579 INF: FPGA: Recv @CAMSNAP 380
17-03-18 03:58:40.314 -07 000000591 INF: FPGA: Recv CAMSNAP
17-03-18 03:58:40.314 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 380 ms to get response, and 384 ms overall
17-03-18 03:58:40.384 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2334002848, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 03:58:40.384 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:58:40.384 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 03:58:40.384 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 03:58:40.414 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 03:58:40.414 -07 000000585 INF: Autofocus start
17-03-18 03:58:40.414 -07 000000585 INF: MeasureProfile start
17-03-18 03:58:40.414 -07 000000012 INF: FPGA: Recv FOCMRRCUR 
17-03-18 03:58:40.424 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 03:58:40.424 -07 000000502 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 03:58:40.424 -07 000000585 INF: MeasureProfile done
17-03-18 03:58:40.424 -07 000000585 INF: X=0  Z correction [um]=-0.0713522
17-03-18 03:58:40.424 -07 000000585 INF: Autofocus finished
17-03-18 03:58:40.624 -07 000000467 INF: FPGA: Recv FOCMRRIMG
17-03-18 03:58:40.624 -07 000000502 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 03:58:40.624 -07 000000610 INF: ------------ Scan Snapping tile 12 at Y-position 69.0263671875, Z-position -0.174794246761126. ----------
17-03-18 03:58:40.624 -07 000000610 INF: Cycle	119	Tile	12	Exposure Settings		A	413	G	199	T	199	C	413
17-03-18 03:58:40.634 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36675, sync = True, waitForSettling = True)
17-03-18 03:58:40.634 -07 000000610 INF: Z Motor: Moving to -0.167887 mm, started at -0.174794 mm, distance = 6.91 um
17-03-18 03:58:40.634 -07 000000610 INF: FPGA: Xmit ZDACW 36675\n [Z Motor]
17-03-18 03:58:40.634 -07 000000502 INF: FPGA: Recv ZDACW
17-03-18 03:58:40.644 -07 000000610 INF: FPGA: 'ZDACW 36675' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:40.644 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:58:40.644 -07 000000585 INF: FPGA: Recv ZDACR 36675
17-03-18 03:58:40.654 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:40.654 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 03:58:40.804 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:40.804 -07 000000591 INF: FPGA: Recv ZSGSRD 35433
17-03-18 03:58:40.814 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:40.814 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:40.814 -07 000000424 INF: FPGA: Recv ZSGSRD 35419
17-03-18 03:58:40.824 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:40.824 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:40.824 -07 000000012 INF: FPGA: Recv ZSGSRD 35426
17-03-18 03:58:40.834 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:40.834 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:40.834 -07 000000424 INF: FPGA: Recv ZSGSRD 35421
17-03-18 03:58:40.844 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:40.844 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:40.844 -07 000000012 INF: FPGA: Recv ZSGSRD 35428
17-03-18 03:58:40.854 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:40.854 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:40.854 -07 000000585 INF: FPGA: Recv ZSGSRD 35426
17-03-18 03:58:40.864 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:40.864 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:40.864 -07 000000467 INF: FPGA: Recv ZSGSRD 35421
17-03-18 03:58:40.874 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:40.874 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:40.874 -07 000000424 INF: FPGA: Recv ZSGSRD 35429
17-03-18 03:58:40.884 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:40.884 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:40.884 -07 000000591 INF: FPGA: Recv ZSGSRD 35423
17-03-18 03:58:40.894 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:40.894 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:40.894 -07 000000579 INF: FPGA: Recv ZSGSRD 35427
17-03-18 03:58:40.904 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:40.904 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:58:40.904 -07 000000467 INF: FPGA: Recv ZPIEZORD 31122
17-03-18 03:58:40.914 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:40.914 -07 000000610 INF: Z Motor: Piezo is near 46.5 V (nominally 0 to 100 V), expect near 56.0 V, since DAC is at 5.596 V. Piezo Error = -9.5 V.
17-03-18 03:58:40.914 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.9 um, Read 10 ADC samples: Avg = 35425 (-167.0 uncal um), Error = 0.9 uncal um, Median = 35426 (-167.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 35419 (-167.0 uncal um), Max = 35433 (-167.1 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 03:58:40.914 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35425, posNoise = 8, negNoise = 6
17-03-18 03:58:40.914 -07 000000610 INF: Z Motor: After move to -0.167887, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:58:40.914 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 03:58:40.914 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:58:40.914 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:58:40.914 -07 000000585 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:58:40.914 -07 000000579 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:58:40.914 -07 000000591 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 03:58:40.914 -07 000000467 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 03:58:40.914 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 03:58:40.914 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:58:40.914 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 03:58:40.914 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 03:58:40.914 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 03:58:40.914 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 03:58:40.924 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 03:58:40.924 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 03:58:40.924 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 03:58:40.924 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 03:58:40.934 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 03:58:40.934 -07 000000467 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 03:58:40.934 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 03:58:40.934 -07 000000591 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 03:58:40.934 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 413 413 199 199 36852 150\n [Camera]
17-03-18 03:58:41.114 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 119, FrontChillerTemperature: 3.985358,
17-03-18 03:58:41.134 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 03:58:41.554 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 605
17-03-18 03:58:41.554 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 605
17-03-18 03:58:41.554 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:58:41.554 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 605
17-03-18 03:58:41.554 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 605
17-03-18 03:58:41.554 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:58:41.564 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:58:41.564 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-18 03:58:41.564 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:58:41.564 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-18 03:58:41.624 -07 000000579 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 03:58:41.624 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 118. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1701, R2=1769, Total=3470. Warn if over 250 bubbles per interval.
17-03-18 03:58:41.744 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36852 798
17-03-18 03:58:41.894 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning grn on 948
17-03-18 03:58:41.964 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 395 ms.
17-03-18 03:58:41.964 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 03:58:41.964 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:58:41.964 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 395 ms.
17-03-18 03:58:41.964 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 03:58:41.964 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:58:41.964 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:58:41.964 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 408 ms.
17-03-18 03:58:42.074 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 115 ms.
17-03-18 03:58:42.084 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 527 ms.
17-03-18 03:58:42.094 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1147
17-03-18 03:58:42.094 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1147
17-03-18 03:58:42.094 -07 000000585 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:58:42.094 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1147
17-03-18 03:58:42.094 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1147
17-03-18 03:58:42.094 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:58:42.104 -07 000000585 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:58:42.104 -07 000000585 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-18 03:58:42.104 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:58:42.104 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 03:58:42.284 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP 1343
17-03-18 03:58:42.284 -07 000000502 INF: FPGA: Recv CAMDBLSNAP
17-03-18 03:58:42.284 -07 000000610 INF: FPGA: 'CAMDBLSNAP 413 413 199 199 36852 150' command took 2 ms to send, 1339 ms to get response, and 1350 ms overall
17-03-18 03:58:42.294 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 03:58:42.294 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 13 at Y-position 69.0263671875, Z-Position -0.167901067133017. ------
17-03-18 03:58:42.294 -07 000000591 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 03:58:42.294 -07 000000467 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.8726 mm, moving Z to -0.17422 mm
17-03-18 03:58:42.294 -07 000000467 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 03:58:42.294 -07 000000462 INF: Y Motor: Entering MoveAbsStepped (target = 111796 steps, sync = True, waitForSettling = True)
17-03-18 03:58:42.294 -07 000000462 INF: Y Motor: Moving to 69.8726 mm, started at 69.0264 mm, delta = 0.8462 mm
17-03-18 03:58:42.294 -07 000000012 INF: FPGA: Recv FOCMRRCUR 
17-03-18 03:58:42.294 -07 000000502 INF: Z Motor: Entering MoveAbsStepped (DAC = 38059, sync = True, waitForSettling = False)
17-03-18 03:58:42.304 -07 000000502 INF: Z Motor: Moving to -0.174223 mm, started at -0.167901 mm, distance = -6.32 um
17-03-18 03:58:42.304 -07 000000591 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 03:58:42.304 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:58:42.304 -07 000000424 INF: FPGA: Recv YRDPOS 141367
17-03-18 03:58:42.314 -07 000000462 INF: FPGA: 'YRDPOS' command took 1 ms to send, 0 ms to get response, and 12 ms overall
17-03-18 03:58:42.314 -07 000000462 INF: Y Motor: Encoder = 141367 = motor step 110443.0 = 69.0269 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:58:42.314 -07 000000591 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 03:58:42.314 -07 000000462 INF: Y Motor: Last commanded position = 69.0426 mm (110468.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 03:58:42.314 -07 000000462 INF: Y Motor: Moving 1353 steps-33
17-03-18 03:58:42.324 -07 000000502 INF: FPGA: Xmit ZDACW 38059\n [Z Motor]
17-03-18 03:58:42.324 -07 000000012 INF: FPGA: Recv ZDACW
17-03-18 03:58:42.334 -07 000000502 INF: FPGA: 'ZDACW 38059' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 03:58:42.334 -07 000000462 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 03:58:42.344 -07 000000502 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:58:42.344 -07 000000480 INF: FPGA: Recv ZDACR 38059
17-03-18 03:58:42.354 -07 000000502 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 03:58:42.354 -07 000000502 INF: Z Motor: MoveAbsStepped took 49 ms (did NOT wait for settling yet))
17-03-18 03:58:42.484 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 383 ms.
17-03-18 03:58:42.484 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-18 03:58:42.484 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:58:42.494 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:58:42.494 -07 000000585 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 392 ms.
17-03-18 03:58:42.494 -07 000000585 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-18 03:58:42.494 -07 000000585 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:58:42.494 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 03:58:42.494 -07 000000585 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:58:42.494 -07 000000585 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 03:58:42.514 -07 000000512 INF: FPGA: Recv FOCMRRFOC
17-03-18 03:58:42.514 -07 000000591 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 211 ms overall
17-03-18 03:58:42.704 -07 000000561 INF: FPGA: Recv YMVTILE
17-03-18 03:58:42.704 -07 000000462 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 394 ms overall
17-03-18 03:58:42.754 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:58:42.764 -07 000000424 INF: FPGA: Recv YRDPOS 143079
17-03-18 03:58:42.764 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 03:58:42.764 -07 000000462 INF: Y Motor: Encoder = 143079 = motor step 111780.5 = 69.8628 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:58:42.764 -07 000000462 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-18 03:58:42.764 -07 000000462 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.846 mm, average velocity = 2.148 mm/sec
17-03-18 03:58:43.714 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:58:43.714 -07 000000502 INF: FPGA: Recv YRDPOS 143079
17-03-18 03:58:43.724 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:58:43.724 -07 000000462 INF: Y Motor: Encoder = 143079 = motor step 111780.5 = 69.8628 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:58:43.754 -07 000000462 INF: Y Motor: After move to 69.872612, error = -0.009819, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 03:58:43.754 -07 000000462 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 03:58:43.754 -07 000000462 INF: Y Motor: Moved to 69.8628 after 1453 ms (table move)
17-03-18 03:58:43.754 -07 000000467 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174223 mm (DAC = 38059)
17-03-18 03:58:43.754 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:43.754 -07 000000579 INF: FPGA: Recv ZSGSRD 36416
17-03-18 03:58:43.764 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 03:58:43.764 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:43.764 -07 000000512 INF: FPGA: Recv ZSGSRD 36408
17-03-18 03:58:43.774 -07 000000467 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:43.774 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:43.774 -07 000000579 INF: FPGA: Recv ZSGSRD 36414
17-03-18 03:58:43.784 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:43.784 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:43.784 -07 000000579 INF: FPGA: Recv ZSGSRD 36405
17-03-18 03:58:43.794 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:43.794 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:43.794 -07 000000579 INF: FPGA: Recv ZSGSRD 36407
17-03-18 03:58:43.804 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:43.804 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:43.804 -07 000000579 INF: FPGA: Recv ZSGSRD 36406
17-03-18 03:58:43.814 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:43.814 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:43.814 -07 000000579 INF: FPGA: Recv ZSGSRD 36404
17-03-18 03:58:43.824 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:43.824 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:43.824 -07 000000480 INF: FPGA: Recv ZSGSRD 36408
17-03-18 03:58:43.834 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:43.834 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:43.834 -07 000000462 INF: FPGA: Recv ZSGSRD 36409
17-03-18 03:58:43.844 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:43.844 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:43.844 -07 000000591 INF: FPGA: Recv ZSGSRD 36418
17-03-18 03:58:43.854 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:43.854 -07 000000467 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:58:43.854 -07 000000480 INF: FPGA: Recv ZPIEZORD 32466
17-03-18 03:58:43.864 -07 000000467 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:43.864 -07 000000467 INF: Z Motor: Piezo is near 49.4 V (nominally 0 to 100 V), expect near 58.1 V, since DAC is at 5.807 V. Piezo Error = -8.7 V.
17-03-18 03:58:43.864 -07 000000467 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.2 um, Read 10 ADC samples: Avg = 36410 (-173.3 uncal um), Error = 0.9 uncal um, Median = 36408 (-173.3 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 36404 (-173.3 uncal um), Max = 36418 (-173.4 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 03:58:43.864 -07 000000467 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36410, posNoise = 8, negNoise = 6
17-03-18 03:58:43.864 -07 000000467 INF: Z Motor: After move to -0.174223, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:58:43.864 -07 000000467 INF: Z Motor: Settle wait time = 1453 ms, measure time = 107 ms (allowed 150 ms), total time = 1560 ms
17-03-18 03:58:43.864 -07 000000467 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-18 03:58:43.914 -07 000000467 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1615 ms
17-03-18 03:58:43.914 -07 000000467 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 03:58:43.914 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:58:43.914 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:58:43.914 -07 000000591 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:58:43.914 -07 000000579 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:58:43.914 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 03:58:43.914 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:58:43.914 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 03:58:43.914 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 03:58:43.924 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 03:58:43.924 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 03:58:43.934 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-18 03:58:43.934 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-18 03:58:43.934 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 03:58:43.974 -07 000000579 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 03:58:44.274 -07 000000579 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 03:58:44.274 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 03:58:44.284 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 03:58:44.284 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2334002848, 0x0, 559484976) start.
17-03-18 03:58:44.314 -07 000000480 INF: FPGA: Recv @CAMSNAP 380
17-03-18 03:58:44.314 -07 000000591 INF: FPGA: Recv CAMSNAP
17-03-18 03:58:44.314 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 379 ms to get response, and 384 ms overall
17-03-18 03:58:44.394 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2334002848, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 03:58:44.394 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:58:44.394 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 03:58:44.394 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 03:58:44.414 -07 000000480 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 03:58:44.414 -07 000000591 INF: Autofocus start
17-03-18 03:58:44.414 -07 000000591 INF: MeasureProfile start
17-03-18 03:58:44.414 -07 000000579 INF: FPGA: Recv FOCMRRCUR 
17-03-18 03:58:44.424 -07 000000480 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 03:58:44.424 -07 000000480 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 03:58:44.424 -07 000000591 INF: MeasureProfile done
17-03-18 03:58:44.424 -07 000000591 INF: X=32  Z correction [um]=0.09220707
17-03-18 03:58:44.424 -07 000000591 INF: Autofocus finished
17-03-18 03:58:44.624 -07 000000462 INF: FPGA: Recv FOCMRRIMG
17-03-18 03:58:44.624 -07 000000480 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 03:58:44.624 -07 000000610 INF: ------------ Scan Snapping tile 13 at Y-position 69.86279296875, Z-position -0.174228916092651. ----------
17-03-18 03:58:44.624 -07 000000610 INF: Cycle	119	Tile	13	Exposure Settings		A	413	G	199	T	199	C	413
17-03-18 03:58:44.634 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36592, sync = True, waitForSettling = True)
17-03-18 03:58:44.634 -07 000000610 INF: Z Motor: Moving to -0.167507 mm, started at -0.174229 mm, distance = 6.72 um
17-03-18 03:58:44.634 -07 000000610 INF: FPGA: Xmit ZDACW 36592\n [Z Motor]
17-03-18 03:58:44.634 -07 000000480 INF: FPGA: Recv ZDACW
17-03-18 03:58:44.644 -07 000000610 INF: FPGA: 'ZDACW 36592' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 03:58:44.644 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:58:44.644 -07 000000591 INF: FPGA: Recv ZDACR 36592
17-03-18 03:58:44.654 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:44.654 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 03:58:44.804 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:44.804 -07 000000480 INF: FPGA: Recv ZSGSRD 35368
17-03-18 03:58:44.814 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:58:44.814 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:44.814 -07 000000579 INF: FPGA: Recv ZSGSRD 35367
17-03-18 03:58:44.824 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:44.824 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:44.824 -07 000000467 INF: FPGA: Recv ZSGSRD 35366
17-03-18 03:58:44.834 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:44.834 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:44.834 -07 000000480 INF: FPGA: Recv ZSGSRD 35365
17-03-18 03:58:44.844 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:44.844 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:44.844 -07 000000467 INF: FPGA: Recv ZSGSRD 35368
17-03-18 03:58:44.854 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:44.854 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:44.854 -07 000000480 INF: FPGA: Recv ZSGSRD 35362
17-03-18 03:58:44.864 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:44.864 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:44.864 -07 000000591 INF: FPGA: Recv ZSGSRD 35361
17-03-18 03:58:44.874 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:44.874 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:44.874 -07 000000462 INF: FPGA: Recv ZSGSRD 35362
17-03-18 03:58:44.884 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:44.884 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:44.884 -07 000000480 INF: FPGA: Recv ZSGSRD 35367
17-03-18 03:58:44.894 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:44.894 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:44.894 -07 000000462 INF: FPGA: Recv ZSGSRD 35364
17-03-18 03:58:44.904 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:44.904 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:58:44.904 -07 000000591 INF: FPGA: Recv ZPIEZORD 31074
17-03-18 03:58:44.914 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:44.914 -07 000000610 INF: Z Motor: Piezo is near 46.4 V (nominally 0 to 100 V), expect near 55.8 V, since DAC is at 5.584 V. Piezo Error = -9.5 V.
17-03-18 03:58:44.914 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.5 um, Read 10 ADC samples: Avg = 35365 (-166.6 uncal um), Error = 0.9 uncal um, Median = 35366 (-166.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 35361 (-166.6 uncal um), Max = 35368 (-166.7 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 03:58:44.914 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35365, posNoise = 3, negNoise = 4
17-03-18 03:58:44.914 -07 000000610 INF: Z Motor: After move to -0.167507, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:58:44.914 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 03:58:44.914 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:58:44.914 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:58:44.914 -07 000000467 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:58:44.914 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:58:44.914 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 03:58:44.914 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:58:44.914 -07 000000591 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 03:58:44.914 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 03:58:44.914 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 03:58:44.914 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 03:58:44.914 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-18 03:58:44.914 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 03:58:44.924 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 03:58:44.924 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 03:58:44.924 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-18 03:58:44.924 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 03:58:44.934 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-18 03:58:44.934 -07 000000591 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 23 ms.
17-03-18 03:58:44.934 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 03:58:44.934 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 23 ms.
17-03-18 03:58:44.944 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 413 413 199 199 36769 150\n [Camera]
17-03-18 03:58:45.134 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 03:58:45.554 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 605
17-03-18 03:58:45.554 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 605
17-03-18 03:58:45.554 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:58:45.554 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:58:45.554 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 03:58:45.554 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 605
17-03-18 03:58:45.554 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 605
17-03-18 03:58:45.564 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:58:45.564 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:58:45.564 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) start.
17-03-18 03:58:45.744 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36769 798
17-03-18 03:58:45.894 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP turning grn on 948
17-03-18 03:58:45.954 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 399 ms.
17-03-18 03:58:45.954 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 03:58:45.954 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:58:45.964 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) end. Duration was 400 ms.
17-03-18 03:58:45.964 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:58:45.964 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 03:58:45.964 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 03:58:45.964 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:58:45.964 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:58:45.974 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-18 03:58:46.094 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1147
17-03-18 03:58:46.094 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1147
17-03-18 03:58:46.094 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:58:46.094 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1147
17-03-18 03:58:46.094 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1147
17-03-18 03:58:46.094 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:58:46.094 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:58:46.094 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start.
17-03-18 03:58:46.094 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:58:46.094 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 03:58:46.284 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP 1343
17-03-18 03:58:46.294 -07 000000579 INF: FPGA: Recv CAMDBLSNAP
17-03-18 03:58:46.294 -07 000000610 INF: FPGA: 'CAMDBLSNAP 413 413 199 199 36769 150' command took 2 ms to send, 1340 ms to get response, and 1350 ms overall
17-03-18 03:58:46.294 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 03:58:46.294 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 14 at Y-position 69.86279296875, Z-Position -0.167515614404511. ------
17-03-18 03:58:46.294 -07 000000561 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 03:58:46.294 -07 000000590 INF: Y Motor: MoveYZ optimized starting. Moving Y to 70.7026 mm, moving Z to -0.17395 mm
17-03-18 03:58:46.294 -07 000000590 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 03:58:46.294 -07 000000585 INF: Y Motor: Entering MoveAbsStepped (target = 113124 steps, sync = True, waitForSettling = True)
17-03-18 03:58:46.294 -07 000000585 INF: Y Motor: Moving to 70.7026 mm, started at 69.8628 mm, delta = 0.8398 mm
17-03-18 03:58:46.294 -07 000000467 INF: Z Motor: Entering MoveAbsStepped (DAC = 38000, sync = True, waitForSettling = False)
17-03-18 03:58:46.294 -07 000000467 INF: Z Motor: Moving to -0.173953 mm, started at -0.167516 mm, distance = -6.44 um
17-03-18 03:58:46.294 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-18 03:58:46.304 -07 000000561 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 03:58:46.304 -07 000000585 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:58:46.304 -07 000000479 INF: FPGA: Recv YRDPOS 143079
17-03-18 03:58:46.314 -07 000000585 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-18 03:58:46.314 -07 000000585 INF: Y Motor: Encoder = 143079 = motor step 111780.5 = 69.8628 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:58:46.314 -07 000000585 INF: Y Motor: Last commanded position = 69.8726 mm (111796.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 03:58:46.314 -07 000000585 INF: Y Motor: Moving 1344 steps-20
17-03-18 03:58:46.314 -07 000000467 INF: FPGA: Xmit ZDACW 38000\n [Z Motor]
17-03-18 03:58:46.314 -07 000000512 INF: FPGA: Recv ZDACW
17-03-18 03:58:46.324 -07 000000561 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 03:58:46.324 -07 000000467 INF: FPGA: 'ZDACW 38000' command took 3 ms to send, 0 ms to get response, and 21 ms overall
17-03-18 03:58:46.334 -07 000000585 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 03:58:46.344 -07 000000467 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:58:46.344 -07 000000480 INF: FPGA: Recv ZDACR 38000
17-03-18 03:58:46.354 -07 000000467 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 03:58:46.354 -07 000000467 INF: Z Motor: MoveAbsStepped took 51 ms (did NOT wait for settling yet))
17-03-18 03:58:46.474 -07 000000480 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 119, FrontChillerTemperature: 3.983999,
17-03-18 03:58:46.494 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 393 ms.
17-03-18 03:58:46.494 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-18 03:58:46.494 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:58:46.494 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:58:46.494 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 398 ms.
17-03-18 03:58:46.494 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 03:58:46.494 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:58:46.504 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:58:46.504 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 03:58:46.504 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 405 ms.
17-03-18 03:58:46.524 -07 000000579 INF: FPGA: Recv FOCMRRFOC
17-03-18 03:58:46.524 -07 000000561 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 03:58:46.624 -07 000000467 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 03:58:46.624 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 118. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1701, R2=1769, Total=3470. Warn if over 250 bubbles per interval.
17-03-18 03:58:46.704 -07 000000424 INF: FPGA: Recv YMVTILE
17-03-18 03:58:46.704 -07 000000585 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 367 ms to get response, and 395 ms overall
17-03-18 03:58:46.754 -07 000000585 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:58:46.754 -07 000000462 INF: FPGA: Recv YRDPOS 144769
17-03-18 03:58:46.764 -07 000000585 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 03:58:46.764 -07 000000585 INF: Y Motor: Encoder = 144769 = motor step 113100.8 = 70.6880 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:58:46.764 -07 000000585 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-18 03:58:46.764 -07 000000585 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.840 mm, average velocity = 2.115 mm/sec
17-03-18 03:58:47.714 -07 000000585 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:58:47.714 -07 000000480 INF: FPGA: Recv YRDPOS 144769
17-03-18 03:58:47.724 -07 000000585 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:58:47.724 -07 000000585 INF: Y Motor: Encoder = 144769 = motor step 113100.8 = 70.6880 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:58:47.744 -07 000000585 INF: Y Motor: After move to 70.702606, error = -0.014618, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 03:58:47.754 -07 000000585 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 03:58:47.754 -07 000000585 INF: Y Motor: Moved to 70.6880 after 1451 ms (table move)
17-03-18 03:58:47.754 -07 000000590 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173953 mm (DAC = 38000)
17-03-18 03:58:47.754 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:47.754 -07 000000585 INF: FPGA: Recv ZSGSRD 36374
17-03-18 03:58:47.764 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 03:58:47.764 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:47.764 -07 000000424 INF: FPGA: Recv ZSGSRD 36363
17-03-18 03:58:47.774 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:47.774 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:47.774 -07 000000424 INF: FPGA: Recv ZSGSRD 36364
17-03-18 03:58:47.784 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:47.784 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:47.784 -07 000000424 INF: FPGA: Recv ZSGSRD 36372
17-03-18 03:58:47.794 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:47.794 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:47.794 -07 000000424 INF: FPGA: Recv ZSGSRD 36364
17-03-18 03:58:47.804 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:47.804 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:47.804 -07 000000424 INF: FPGA: Recv ZSGSRD 36366
17-03-18 03:58:47.814 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:47.814 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:47.814 -07 000000424 INF: FPGA: Recv ZSGSRD 36364
17-03-18 03:58:47.824 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:47.824 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:47.824 -07 000000424 INF: FPGA: Recv ZSGSRD 36368
17-03-18 03:58:47.834 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:47.834 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:47.834 -07 000000424 INF: FPGA: Recv ZSGSRD 36368
17-03-18 03:58:47.844 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:47.844 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:47.844 -07 000000424 INF: FPGA: Recv ZSGSRD 36372
17-03-18 03:58:47.854 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:47.854 -07 000000590 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:58:47.854 -07 000000424 INF: FPGA: Recv ZPIEZORD 32398
17-03-18 03:58:47.864 -07 000000590 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:47.864 -07 000000590 INF: Z Motor: Piezo is near 49.2 V (nominally 0 to 100 V), expect near 58.0 V, since DAC is at 5.798 V. Piezo Error = -8.8 V.
17-03-18 03:58:47.864 -07 000000590 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.0 um, Read 10 ADC samples: Avg = 36368 (-173.1 uncal um), Error = 0.9 uncal um, Median = 36367 (-173.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 36363 (-173.0 uncal um), Max = 36374 (-173.1 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 03:58:47.864 -07 000000590 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36368, posNoise = 6, negNoise = 5
17-03-18 03:58:47.864 -07 000000590 INF: Z Motor: After move to -0.173953, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:58:47.864 -07 000000590 INF: Z Motor: Settle wait time = 1455 ms, measure time = 107 ms (allowed 150 ms), total time = 1562 ms
17-03-18 03:58:47.864 -07 000000590 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-18 03:58:47.914 -07 000000590 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1614 ms
17-03-18 03:58:47.914 -07 000000590 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 03:58:47.914 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:58:47.914 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:58:47.914 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:58:47.914 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:58:47.914 -07 000000479 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 03:58:47.914 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:58:47.914 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 03:58:47.914 -07 000000479 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 03:58:47.924 -07 000000479 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 03:58:47.924 -07 000000479 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 03:58:47.924 -07 000000479 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 03:58:47.924 -07 000000479 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-18 03:58:47.934 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 03:58:47.974 -07 000000591 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 03:58:48.274 -07 000000480 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 03:58:48.274 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 03:58:48.274 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 03:58:48.274 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 675221432, 0x0, 559484976) start.
17-03-18 03:58:48.314 -07 000000561 INF: FPGA: Recv @CAMSNAP 380
17-03-18 03:58:48.314 -07 000000480 INF: FPGA: Recv CAMSNAP
17-03-18 03:58:48.314 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 03:58:48.394 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 675221432, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 03:58:48.394 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:58:48.394 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 03:58:48.394 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 116 ms.
17-03-18 03:58:48.414 -07 000000561 INF: Autofocus start
17-03-18 03:58:48.414 -07 000000561 INF: MeasureProfile start
17-03-18 03:58:48.414 -07 000000579 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 03:58:48.414 -07 000000591 INF: FPGA: Recv FOCMRRCUR 
17-03-18 03:58:48.424 -07 000000579 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 03:58:48.424 -07 000000579 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 03:58:48.424 -07 000000561 INF: MeasureProfile done
17-03-18 03:58:48.424 -07 000000561 INF: X=16  Z correction [um]=0.01042744
17-03-18 03:58:48.424 -07 000000561 INF: Autofocus finished
17-03-18 03:58:48.624 -07 000000561 INF: FPGA: Recv FOCMRRIMG
17-03-18 03:58:48.624 -07 000000579 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 03:58:48.624 -07 000000610 INF: ------------ Scan Snapping tile 14 at Y-position 70.68798828125, Z-position -0.173959099182697. ----------
17-03-18 03:58:48.624 -07 000000610 INF: Cycle	119	Tile	14	Exposure Settings		A	413	G	199	T	199	C	413
17-03-18 03:58:48.634 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36515, sync = True, waitForSettling = True)
17-03-18 03:58:48.634 -07 000000610 INF: Z Motor: Moving to -0.167155 mm, started at -0.173959 mm, distance = 6.80 um
17-03-18 03:58:48.634 -07 000000610 INF: FPGA: Xmit ZDACW 36515\n [Z Motor]
17-03-18 03:58:48.634 -07 000000480 INF: FPGA: Recv ZDACW
17-03-18 03:58:48.644 -07 000000610 INF: FPGA: 'ZDACW 36515' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 03:58:48.644 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:58:48.644 -07 000000561 INF: FPGA: Recv ZDACR 36515
17-03-18 03:58:48.654 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:48.654 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 03:58:48.804 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:48.804 -07 000000579 INF: FPGA: Recv ZSGSRD 35308
17-03-18 03:58:48.814 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:58:48.814 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:48.814 -07 000000480 INF: FPGA: Recv ZSGSRD 35316
17-03-18 03:58:48.824 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:48.824 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:48.824 -07 000000480 INF: FPGA: Recv ZSGSRD 35305
17-03-18 03:58:48.834 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:48.834 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:48.834 -07 000000480 INF: FPGA: Recv ZSGSRD 35310
17-03-18 03:58:48.844 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:48.844 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:48.844 -07 000000591 INF: FPGA: Recv ZSGSRD 35311
17-03-18 03:58:48.854 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:48.854 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:48.854 -07 000000480 INF: FPGA: Recv ZSGSRD 35315
17-03-18 03:58:48.864 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:48.864 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:48.864 -07 000000480 INF: FPGA: Recv ZSGSRD 35314
17-03-18 03:58:48.874 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:48.874 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:48.874 -07 000000480 INF: FPGA: Recv ZSGSRD 35303
17-03-18 03:58:48.884 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:48.884 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:48.884 -07 000000480 INF: FPGA: Recv ZSGSRD 35312
17-03-18 03:58:48.894 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:48.894 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:48.894 -07 000000591 INF: FPGA: Recv ZSGSRD 35314
17-03-18 03:58:48.904 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:48.904 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:58:48.904 -07 000000512 INF: FPGA: Recv ZPIEZORD 31013
17-03-18 03:58:48.914 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:48.914 -07 000000610 INF: Z Motor: Piezo is near 46.3 V (nominally 0 to 100 V), expect near 55.7 V, since DAC is at 5.572 V. Piezo Error = -9.5 V.
17-03-18 03:58:48.914 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.2 um, Read 10 ADC samples: Avg = 35311 (-166.3 uncal um), Error = 0.9 uncal um, Median = 35312 (-166.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 35303 (-166.2 uncal um), Max = 35316 (-166.3 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 03:58:48.914 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35311, posNoise = 5, negNoise = 8
17-03-18 03:58:48.914 -07 000000610 INF: Z Motor: After move to -0.167155, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:58:48.914 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 03:58:48.914 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:58:48.914 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:58:48.914 -07 000000579 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:58:48.914 -07 000000480 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:58:48.914 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 03:58:48.914 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 03:58:48.914 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:58:48.914 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 03:58:48.914 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 3 ms.
17-03-18 03:58:48.914 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 03:58:48.914 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 4 ms.
17-03-18 03:58:48.914 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 03:58:48.924 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 03:58:48.924 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 03:58:48.924 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 03:58:48.924 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 03:58:48.934 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 03:58:48.934 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 03:58:48.934 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 03:58:48.934 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 03:58:48.934 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 413 413 199 199 36691 150\n [Camera]
17-03-18 03:58:49.134 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 03:58:49.554 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 605
17-03-18 03:58:49.554 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 605
17-03-18 03:58:49.554 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:58:49.554 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:58:49.554 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) start.
17-03-18 03:58:49.554 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 605
17-03-18 03:58:49.554 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 605
17-03-18 03:58:49.554 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:58:49.684 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:58:49.684 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-18 03:58:49.744 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36691 798
17-03-18 03:58:49.894 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning grn on 948
17-03-18 03:58:49.954 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) end. Duration was 394 ms.
17-03-18 03:58:49.954 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 03:58:49.954 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:58:49.954 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:58:49.954 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 03:58:50.064 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 375 ms.
17-03-18 03:58:50.064 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-18 03:58:50.064 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:58:50.064 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-18 03:58:50.074 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 512 ms.
17-03-18 03:58:50.094 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1147
17-03-18 03:58:50.094 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1147
17-03-18 03:58:50.094 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:58:50.094 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1147
17-03-18 03:58:50.094 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1147
17-03-18 03:58:50.094 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:58:50.104 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:58:50.104 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) start.
17-03-18 03:58:50.104 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:58:50.104 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 03:58:50.284 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP 1340
17-03-18 03:58:50.284 -07 000000561 INF: FPGA: Recv CAMDBLSNAP
17-03-18 03:58:50.284 -07 000000610 INF: FPGA: 'CAMDBLSNAP 413 413 199 199 36691 150' command took 2 ms to send, 1339 ms to get response, and 1349 ms overall
17-03-18 03:58:50.294 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 03:58:50.294 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 15 at Y-position 70.68798828125, Z-Position -0.167168706948856. ------
17-03-18 03:58:50.294 -07 000000591 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 03:58:50.294 -07 000000561 INF: Y Motor: MoveYZ optimized starting. Moving Y to 71.5326 mm, moving Z to -0.17389 mm
17-03-18 03:58:50.294 -07 000000561 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 03:58:50.294 -07 000000579 INF: FPGA: Recv FOCMRRCUR 
17-03-18 03:58:50.304 -07 000000591 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 03:58:50.304 -07 000000512 INF: Y Motor: Entering MoveAbsStepped (target = 114452 steps, sync = True, waitForSettling = True)
17-03-18 03:58:50.304 -07 000000512 INF: Y Motor: Moving to 71.5326 mm, started at 70.6880 mm, delta = 0.8446 mm
17-03-18 03:58:50.304 -07 000000467 INF: Z Motor: Entering MoveAbsStepped (DAC = 37987, sync = True, waitForSettling = False)
17-03-18 03:58:50.304 -07 000000467 INF: Z Motor: Moving to -0.173893 mm, started at -0.167169 mm, distance = -6.72 um
17-03-18 03:58:50.304 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:58:50.304 -07 000000625 INF: FPGA: Recv YRDPOS 144769
17-03-18 03:58:50.314 -07 000000591 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 03:58:50.314 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:50.314 -07 000000512 INF: Y Motor: Encoder = 144769 = motor step 113100.8 = 70.6880 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:58:50.314 -07 000000512 INF: Y Motor: Last commanded position = 70.7026 mm (113124.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 03:58:50.314 -07 000000512 INF: Y Motor: Moving 1351 steps-30
17-03-18 03:58:50.324 -07 000000467 INF: FPGA: Xmit ZDACW 37987\n [Z Motor]
17-03-18 03:58:50.324 -07 000000447 INF: FPGA: Recv ZDACW
17-03-18 03:58:50.334 -07 000000467 INF: FPGA: 'ZDACW 37987' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 03:58:50.334 -07 000000512 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 03:58:50.344 -07 000000467 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:58:50.344 -07 000000502 INF: FPGA: Recv ZDACR 37987
17-03-18 03:58:50.354 -07 000000467 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 03:58:50.354 -07 000000467 INF: Z Motor: MoveAbsStepped took 49 ms (did NOT wait for settling yet))
17-03-18 03:58:50.504 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) end. Duration was 398 ms.
17-03-18 03:58:50.504 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 03:58:50.504 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:58:50.504 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 396 ms.
17-03-18 03:58:50.504 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 03:58:50.504 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:58:50.504 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:58:50.504 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms.
17-03-18 03:58:50.504 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:58:50.514 -07 000000625 INF: FPGA: Recv FOCMRRFOC
17-03-18 03:58:50.514 -07 000000591 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 212 ms overall
17-03-18 03:58:50.514 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 416 ms.
17-03-18 03:58:50.704 -07 000000608 INF: FPGA: Recv YMVTILE
17-03-18 03:58:50.704 -07 000000512 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 398 ms overall
17-03-18 03:58:50.754 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:58:50.754 -07 000000462 INF: FPGA: Recv YRDPOS 146469
17-03-18 03:58:50.764 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 03:58:50.764 -07 000000512 INF: Y Motor: Encoder = 146469 = motor step 114428.9 = 71.5181 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:58:50.764 -07 000000512 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-18 03:58:50.764 -07 000000512 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.845 mm, average velocity = 2.122 mm/sec
17-03-18 03:58:51.624 -07 000000447 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 03:58:51.624 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 118. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1701, R2=1769, Total=3470. Warn if over 250 bubbles per interval.
17-03-18 03:58:51.714 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:58:51.714 -07 000000590 INF: FPGA: Recv YRDPOS 146470
17-03-18 03:58:51.724 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:58:51.724 -07 000000512 INF: Y Motor: Encoder = 146470 = motor step 114429.7 = 71.5186 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:58:51.744 -07 000000512 INF: Y Motor: After move to 71.532608, error = -0.014053, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 03:58:51.744 -07 000000512 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 03:58:51.744 -07 000000512 INF: Y Motor: Moved to 71.5186 after 1449 ms (table move)
17-03-18 03:58:51.754 -07 000000561 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173893 mm (DAC = 37987)
17-03-18 03:58:51.754 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:51.754 -07 000000585 INF: FPGA: Recv ZSGSRD 36366
17-03-18 03:58:51.764 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 03:58:51.764 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:51.764 -07 000000480 INF: FPGA: Recv ZSGSRD 36360
17-03-18 03:58:51.774 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:51.774 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:51.774 -07 000000447 INF: FPGA: Recv ZSGSRD 36364
17-03-18 03:58:51.784 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:51.784 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:51.784 -07 000000608 INF: FPGA: Recv ZSGSRD 36359
17-03-18 03:58:51.794 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:51.794 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:51.794 -07 000000585 INF: FPGA: Recv ZSGSRD 36365
17-03-18 03:58:51.804 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:51.804 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:51.804 -07 000000480 INF: FPGA: Recv ZSGSRD 36358
17-03-18 03:58:51.814 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:51.814 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:51.814 -07 000000512 INF: FPGA: Recv ZSGSRD 36360
17-03-18 03:58:51.824 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:51.834 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:51.834 -07 000000447 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 119, FrontChillerTemperature: 3.989471,
17-03-18 03:58:51.834 -07 000000608 INF: FPGA: Recv ZSGSRD 36359
17-03-18 03:58:51.844 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 03:58:51.854 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:51.854 -07 000000447 INF: FPGA: Recv ZSGSRD 36355
17-03-18 03:58:51.864 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 03:58:51.884 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:51.884 -07 000000512 INF: FPGA: Recv ZSGSRD 36360
17-03-18 03:58:51.894 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 03:58:51.894 -07 000000561 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:58:51.894 -07 000000012 INF: FPGA: Recv ZPIEZORD 32387
17-03-18 03:58:51.904 -07 000000561 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:51.904 -07 000000561 INF: Z Motor: Piezo is near 49.2 V (nominally 0 to 100 V), expect near 58.0 V, since DAC is at 5.796 V. Piezo Error = -8.8 V.
17-03-18 03:58:51.904 -07 000000561 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.9 um, Read 10 ADC samples: Avg = 36361 (-173.0 uncal um), Error = 0.9 uncal um, Median = 36360 (-173.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 36355 (-173.0 uncal um), Max = 36366 (-173.1 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 03:58:51.904 -07 000000561 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36361, posNoise = 5, negNoise = 6
17-03-18 03:58:51.904 -07 000000561 INF: Z Motor: After move to -0.173893, error = -0.000021, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:58:51.904 -07 000000561 INF: Z Motor: Settle wait time = 1453 ms, measure time = 147 ms (allowed 150 ms), total time = 1600 ms
17-03-18 03:58:51.904 -07 000000561 INF: Z Motor: Waiting extra 3 ms after reading position to reach expected total of 150 ms
17-03-18 03:58:51.914 -07 000000561 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1614 ms
17-03-18 03:58:51.914 -07 000000561 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 03:58:51.914 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:58:51.914 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:58:51.914 -07 000000591 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:58:51.914 -07 000000467 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:58:51.914 -07 000000585 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 03:58:51.914 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:58:51.924 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 03:58:51.924 -07 000000585 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 03:58:51.924 -07 000000585 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 03:58:51.924 -07 000000585 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 03:58:51.924 -07 000000585 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 03:58:51.924 -07 000000585 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-18 03:58:51.934 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 03:58:51.974 -07 000000585 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 03:58:52.274 -07 000000467 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 03:58:52.274 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 03:58:52.274 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 03:58:52.284 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1130172064, 0x0, 559484976) start.
17-03-18 03:58:52.314 -07 000000561 INF: FPGA: Recv @CAMSNAP 380
17-03-18 03:58:52.314 -07 000000424 INF: FPGA: Recv CAMSNAP
17-03-18 03:58:52.314 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 384 ms overall
17-03-18 03:58:52.394 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1130172064, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 03:58:52.394 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:58:52.394 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-18 03:58:52.394 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 121 ms.
17-03-18 03:58:52.414 -07 000000447 INF: Autofocus start
17-03-18 03:58:52.414 -07 000000447 INF: MeasureProfile start
17-03-18 03:58:52.414 -07 000000462 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 03:58:52.414 -07 000000437 INF: FPGA: Recv FOCMRRCUR 
17-03-18 03:58:52.424 -07 000000462 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 03:58:52.424 -07 000000462 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 03:58:52.424 -07 000000447 INF: MeasureProfile done
17-03-18 03:58:52.424 -07 000000447 INF: X=0  Z correction [um]=-0.0713522
17-03-18 03:58:52.424 -07 000000447 INF: Autofocus finished
17-03-18 03:58:52.624 -07 000000561 INF: FPGA: Recv FOCMRRIMG
17-03-18 03:58:52.624 -07 000000462 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 03:58:52.744 -07 000000610 INF: ------------ Scan Snapping tile 15 at Y-position 71.5185546875, Z-position -0.173914129697705. ----------
17-03-18 03:58:52.744 -07 000000610 INF: Cycle	119	Tile	15	Exposure Settings		A	413	G	199	T	199	C	413
17-03-18 03:58:52.744 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36484, sync = True, waitForSettling = True)
17-03-18 03:58:52.744 -07 000000610 INF: Z Motor: Moving to -0.167013 mm, started at -0.173914 mm, distance = 6.90 um
17-03-18 03:58:52.744 -07 000000610 INF: FPGA: Xmit ZDACW 36484\n [Z Motor]
17-03-18 03:58:52.744 -07 000000462 INF: FPGA: Recv ZDACW
17-03-18 03:58:52.754 -07 000000610 INF: FPGA: 'ZDACW 36484' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 03:58:52.754 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:58:52.754 -07 000000462 INF: FPGA: Recv ZDACR 36484
17-03-18 03:58:52.764 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:52.764 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 03:58:52.914 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:52.914 -07 000000561 INF: FPGA: Recv ZSGSRD 35284
17-03-18 03:58:52.924 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:52.924 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:52.924 -07 000000479 INF: FPGA: Recv ZSGSRD 35289
17-03-18 03:58:52.934 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:52.934 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:52.934 -07 000000462 INF: FPGA: Recv ZSGSRD 35287
17-03-18 03:58:52.944 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:52.944 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:52.944 -07 000000462 INF: FPGA: Recv ZSGSRD 35290
17-03-18 03:58:52.954 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:52.954 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:52.954 -07 000000561 INF: FPGA: Recv ZSGSRD 35287
17-03-18 03:58:52.964 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:52.964 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:52.964 -07 000000462 INF: FPGA: Recv ZSGSRD 35294
17-03-18 03:58:52.974 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:52.974 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:52.974 -07 000000561 INF: FPGA: Recv ZSGSRD 35286
17-03-18 03:58:52.984 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:52.984 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:52.984 -07 000000561 INF: FPGA: Recv ZSGSRD 35288
17-03-18 03:58:52.994 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:52.994 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:52.994 -07 000000590 INF: FPGA: Recv ZSGSRD 35283
17-03-18 03:58:53.004 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:53.004 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:53.004 -07 000000561 INF: FPGA: Recv ZSGSRD 35287
17-03-18 03:58:53.014 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:53.014 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:58:53.014 -07 000000462 INF: FPGA: Recv ZPIEZORD 30992
17-03-18 03:58:53.024 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:53.024 -07 000000610 INF: Z Motor: Piezo is near 46.2 V (nominally 0 to 100 V), expect near 55.7 V, since DAC is at 5.567 V. Piezo Error = -9.5 V.
17-03-18 03:58:53.024 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.0 um, Read 10 ADC samples: Avg = 35288 (-166.2 uncal um), Error = 0.9 uncal um, Median = 35287 (-166.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35283 (-166.1 uncal um), Max = 35294 (-166.2 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 03:58:53.024 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35288, posNoise = 6, negNoise = 5
17-03-18 03:58:53.024 -07 000000610 INF: Z Motor: After move to -0.167013, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:58:53.024 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-18 03:58:53.024 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:58:53.024 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:58:53.024 -07 000000590 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:58:53.024 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:58:53.024 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 03:58:53.024 -07 000000479 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 03:58:53.024 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 03:58:53.024 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:58:53.024 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 03:58:53.024 -07 000000479 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 03:58:53.024 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 03:58:53.024 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 03:58:53.034 -07 000000479 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 03:58:53.034 -07 000000479 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 03:58:53.034 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 03:58:53.034 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 03:58:53.044 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 12 ms.
17-03-18 03:58:53.044 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 18 ms.
17-03-18 03:58:53.044 -07 000000479 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms.
17-03-18 03:58:53.044 -07 000000479 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 19 ms.
17-03-18 03:58:53.044 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 413 413 199 199 36661 150\n [Camera]
17-03-18 03:58:53.244 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 03:58:53.664 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 605
17-03-18 03:58:53.664 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 605
17-03-18 03:58:53.664 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:58:53.664 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 605
17-03-18 03:58:53.664 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 605
17-03-18 03:58:53.664 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:58:53.664 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:58:53.664 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-18 03:58:53.674 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:58:53.674 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) start.
17-03-18 03:58:53.854 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36661 798
17-03-18 03:58:54.004 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP turning grn on 948
17-03-18 03:58:54.054 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) end. Duration was 380 ms.
17-03-18 03:58:54.054 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-18 03:58:54.054 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:58:54.054 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 386 ms.
17-03-18 03:58:54.054 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-18 03:58:54.054 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:58:54.054 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:58:54.054 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:58:54.054 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 03:58:54.064 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 03:58:54.204 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1147
17-03-18 03:58:54.204 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1147
17-03-18 03:58:54.204 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:58:54.204 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1147
17-03-18 03:58:54.204 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1147
17-03-18 03:58:54.204 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:58:54.204 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:58:54.204 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 03:58:54.204 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:58:54.204 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 03:58:54.394 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP 1339
17-03-18 03:58:54.394 -07 000000479 INF: FPGA: Recv CAMDBLSNAP
17-03-18 03:58:54.394 -07 000000610 INF: FPGA: 'CAMDBLSNAP 413 413 199 199 36661 150' command took 2 ms to send, 1334 ms to get response, and 1346 ms overall
17-03-18 03:58:54.394 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 03:58:54.394 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 16 at Y-position 71.5185546875, Z-Position -0.167020950069596. ------
17-03-18 03:58:54.404 -07 000000590 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 03:58:54.404 -07 000000479 INF: Y Motor: MoveYZ optimized starting. Moving Y to 72.3626 mm, moving Z to -0.17343 mm
17-03-18 03:58:54.404 -07 000000479 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 03:58:54.404 -07 000000424 INF: FPGA: Recv FOCMRRCUR 
17-03-18 03:58:54.404 -07 000000579 INF: Y Motor: Entering MoveAbsStepped (target = 115780 steps, sync = True, waitForSettling = True)
17-03-18 03:58:54.404 -07 000000579 INF: Y Motor: Moving to 72.3626 mm, started at 71.5186 mm, delta = 0.8441 mm
17-03-18 03:58:54.404 -07 000000512 INF: Z Motor: Entering MoveAbsStepped (DAC = 37886, sync = True, waitForSettling = False)
17-03-18 03:58:54.404 -07 000000512 INF: Z Motor: Moving to -0.173431 mm, started at -0.167021 mm, distance = -6.41 um
17-03-18 03:58:54.414 -07 000000590 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 03:58:54.414 -07 000000512 INF: FPGA: Xmit ZDACW 37886\n [Z Motor]
17-03-18 03:58:54.414 -07 000000447 INF: FPGA: Recv ZDACW
17-03-18 03:58:54.424 -07 000000579 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:58:54.424 -07 000000512 INF: FPGA: 'ZDACW 37886' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-18 03:58:54.424 -07 000000424 INF: FPGA: Recv YRDPOS 146470
17-03-18 03:58:54.434 -07 000000579 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-18 03:58:54.434 -07 000000579 INF: Y Motor: Encoder = 146470 = motor step 114429.7 = 71.5186 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:58:54.434 -07 000000579 INF: Y Motor: Last commanded position = 71.5326 mm (114452.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 03:58:54.434 -07 000000579 INF: Y Motor: Moving 1350 steps-30
17-03-18 03:58:54.434 -07 000000590 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 03:58:54.444 -07 000000512 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:58:54.444 -07 000000585 INF: FPGA: Recv ZDACR 37886
17-03-18 03:58:54.454 -07 000000512 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 03:58:54.454 -07 000000512 INF: Z Motor: MoveAbsStepped took 45 ms (did NOT wait for settling yet))
17-03-18 03:58:54.454 -07 000000579 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 03:58:54.604 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 398 ms.
17-03-18 03:58:54.604 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 03:58:54.604 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:58:54.614 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 403 ms.
17-03-18 03:58:54.614 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-18 03:58:54.614 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:58:54.614 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:58:54.614 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 408 ms.
17-03-18 03:58:54.614 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:58:54.624 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-18 03:58:54.634 -07 000000561 INF: FPGA: Recv FOCMRRFOC
17-03-18 03:58:54.634 -07 000000590 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 194 ms to get response, and 223 ms overall
17-03-18 03:58:54.834 -07 000000462 INF: FPGA: Recv YMVTILE
17-03-18 03:58:54.834 -07 000000579 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 372 ms to get response, and 401 ms overall
17-03-18 03:58:54.874 -07 000000579 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:58:54.884 -07 000000585 INF: FPGA: Recv YRDPOS 148171
17-03-18 03:58:54.884 -07 000000579 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-18 03:58:54.884 -07 000000579 INF: Y Motor: Encoder = 148171 = motor step 115758.6 = 72.3491 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:58:54.884 -07 000000579 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-18 03:58:54.884 -07 000000579 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 401 ms, distance = 0.844 mm, average velocity = 2.105 mm/sec
17-03-18 03:58:55.834 -07 000000579 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:58:55.834 -07 000000512 INF: FPGA: Recv YRDPOS 148171
17-03-18 03:58:55.844 -07 000000579 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:58:55.844 -07 000000579 INF: Y Motor: Encoder = 148171 = motor step 115758.6 = 72.3491 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:58:55.864 -07 000000579 INF: Y Motor: After move to 72.362610, error = -0.013489, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 03:58:55.864 -07 000000579 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 03:58:55.874 -07 000000579 INF: Y Motor: Moved to 72.3491 after 1465 ms (table move)
17-03-18 03:58:55.874 -07 000000479 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173431 mm (DAC = 37886)
17-03-18 03:58:55.874 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:55.874 -07 000000579 INF: FPGA: Recv ZSGSRD 36285
17-03-18 03:58:55.884 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 03:58:55.884 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:55.884 -07 000000625 INF: FPGA: Recv ZSGSRD 36287
17-03-18 03:58:55.894 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:55.894 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:55.894 -07 000000590 INF: FPGA: Recv ZSGSRD 36279
17-03-18 03:58:55.904 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:55.904 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:55.904 -07 000000579 INF: FPGA: Recv ZSGSRD 36295
17-03-18 03:58:55.914 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:55.914 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:55.914 -07 000000625 INF: FPGA: Recv ZSGSRD 36283
17-03-18 03:58:55.924 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:55.924 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:55.924 -07 000000579 INF: FPGA: Recv ZSGSRD 36297
17-03-18 03:58:55.934 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:55.934 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:55.934 -07 000000585 INF: FPGA: Recv ZSGSRD 36287
17-03-18 03:58:55.944 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:55.944 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:55.944 -07 000000512 INF: FPGA: Recv ZSGSRD 36282
17-03-18 03:58:55.954 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:55.954 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:55.954 -07 000000512 INF: FPGA: Recv ZSGSRD 36291
17-03-18 03:58:55.964 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:55.964 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:55.964 -07 000000462 INF: FPGA: Recv ZSGSRD 36283
17-03-18 03:58:55.974 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:55.974 -07 000000479 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:58:55.974 -07 000000447 INF: FPGA: Recv ZPIEZORD 32328
17-03-18 03:58:55.984 -07 000000479 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:55.984 -07 000000479 INF: Z Motor: Piezo is near 49.1 V (nominally 0 to 100 V), expect near 57.8 V, since DAC is at 5.781 V. Piezo Error = -8.7 V.
17-03-18 03:58:55.984 -07 000000479 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.4 um, Read 10 ADC samples: Avg = 36287 (-172.6 uncal um), Error = 0.9 uncal um, Median = 36286 (-172.5 uncal um), StdDev = 6 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 36279 (-172.5 uncal um), Max = 36297 (-172.6 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 03:58:55.984 -07 000000479 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36287, posNoise = 10, negNoise = 8
17-03-18 03:58:55.984 -07 000000479 INF: Z Motor: After move to -0.173431, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:58:55.984 -07 000000479 INF: Z Motor: Settle wait time = 1469 ms, measure time = 106 ms (allowed 150 ms), total time = 1575 ms
17-03-18 03:58:55.984 -07 000000479 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-18 03:58:56.034 -07 000000479 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1628 ms
17-03-18 03:58:56.034 -07 000000479 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 03:58:56.034 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:58:56.034 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:58:56.034 -07 000000579 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:58:56.034 -07 000000590 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:58:56.034 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 03:58:56.034 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:58:56.034 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 03:58:56.034 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 03:58:56.044 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 03:58:56.044 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 03:58:56.044 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 03:58:56.044 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 03:58:56.054 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 03:58:56.094 -07 000000462 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 03:58:56.394 -07 000000462 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 03:58:56.394 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 03:58:56.394 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 03:58:56.514 -07 000000590 INF: FPGA: Recv @CAMSNAP 380
17-03-18 03:58:56.514 -07 000000590 INF: FPGA: Recv CAMSNAP
17-03-18 03:58:56.514 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 453 ms to get response, and 462 ms overall
17-03-18 03:58:56.514 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1130172064, 0x0, 559484976) start.
17-03-18 03:58:56.624 -07 000000479 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 03:58:56.634 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1130172064, 0x0, 559484976) end. Duration was 117 ms.
17-03-18 03:58:56.634 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:58:56.634 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 03:58:56.634 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 233 ms.
17-03-18 03:58:56.634 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 118. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1701, R2=1769, Total=3470. Warn if over 250 bubbles per interval.
17-03-18 03:58:56.714 -07 000000625 INF: Autofocus start
17-03-18 03:58:56.714 -07 000000625 INF: MeasureProfile start
17-03-18 03:58:56.714 -07 000000447 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 03:58:56.714 -07 000000585 INF: FPGA: Recv FOCMRRCUR 
17-03-18 03:58:56.724 -07 000000447 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 03:58:56.724 -07 000000447 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 03:58:56.724 -07 000000625 INF: MeasureProfile done
17-03-18 03:58:56.724 -07 000000625 INF: X=32  Z correction [um]=0.09220707
17-03-18 03:58:56.724 -07 000000625 INF: Autofocus finished
17-03-18 03:58:56.924 -07 000000625 INF: FPGA: Recv FOCMRRIMG
17-03-18 03:58:56.924 -07 000000447 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 03:58:56.924 -07 000000610 INF: ------------ Scan Snapping tile 16 at Y-position 72.34912109375, Z-position -0.173438737999215. ----------
17-03-18 03:58:56.924 -07 000000610 INF: Cycle	119	Tile	16	Exposure Settings		A	413	G	199	T	199	C	413
17-03-18 03:58:56.934 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36419, sync = True, waitForSettling = True)
17-03-18 03:58:56.934 -07 000000610 INF: Z Motor: Moving to -0.166715 mm, started at -0.173439 mm, distance = 6.72 um
17-03-18 03:58:56.934 -07 000000610 INF: FPGA: Xmit ZDACW 36419\n [Z Motor]
17-03-18 03:58:56.934 -07 000000561 INF: FPGA: Recv ZDACW
17-03-18 03:58:56.944 -07 000000610 INF: FPGA: 'ZDACW 36419' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 03:58:56.944 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:58:56.944 -07 000000625 INF: FPGA: Recv ZDACR 36419
17-03-18 03:58:56.954 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:56.954 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 03:58:57.104 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:57.104 -07 000000561 INF: FPGA: Recv ZSGSRD 35241
17-03-18 03:58:57.114 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:58:57.114 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:57.114 -07 000000561 INF: FPGA: Recv ZSGSRD 35244
17-03-18 03:58:57.124 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:57.124 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:57.124 -07 000000625 INF: FPGA: Recv ZSGSRD 35239
17-03-18 03:58:57.134 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:57.134 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:57.134 -07 000000561 INF: FPGA: Recv ZSGSRD 35243
17-03-18 03:58:57.144 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:57.144 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:57.144 -07 000000561 INF: FPGA: Recv ZSGSRD 35243
17-03-18 03:58:57.154 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:57.154 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:57.154 -07 000000625 INF: FPGA: Recv ZSGSRD 35239
17-03-18 03:58:57.164 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:57.164 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:57.164 -07 000000424 INF: FPGA: Recv ZSGSRD 35252
17-03-18 03:58:57.174 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:57.174 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:57.174 -07 000000625 INF: FPGA: Recv ZSGSRD 35249
17-03-18 03:58:57.184 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:57.184 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:57.184 -07 000000424 INF: FPGA: Recv ZSGSRD 35246
17-03-18 03:58:57.194 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:57.194 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:58:57.194 -07 000000585 INF: FPGA: Recv ZSGSRD 35242
17-03-18 03:58:57.204 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:57.204 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:58:57.204 -07 000000585 INF: FPGA: Recv ZPIEZORD 30916
17-03-18 03:58:57.214 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:57.214 -07 000000610 INF: Z Motor: Piezo is near 46.0 V (nominally 0 to 100 V), expect near 55.6 V, since DAC is at 5.557 V. Piezo Error = -9.5 V.
17-03-18 03:58:57.214 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.7 um, Read 10 ADC samples: Avg = 35244 (-165.9 uncal um), Error = 0.8 uncal um, Median = 35243 (-165.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 35239 (-165.8 uncal um), Max = 35252 (-165.9 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 03:58:57.214 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35244, posNoise = 8, negNoise = 5
17-03-18 03:58:57.214 -07 000000610 INF: Z Motor: After move to -0.166715, error = -0.000023, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:58:57.214 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 03:58:57.214 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:58:57.214 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:58:57.214 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:58:57.214 -07 000000447 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:58:57.214 -07 000000590 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 03:58:57.214 -07 000000579 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 03:58:57.214 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 03:58:57.214 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:58:57.214 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 03:58:57.214 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 03:58:57.214 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 03:58:57.214 -07 000000590 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 03:58:57.224 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 03:58:57.224 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 03:58:57.224 -07 000000590 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 03:58:57.224 -07 000000590 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 03:58:57.234 -07 000000561 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 119, FrontChillerTemperature: 4.000345,
17-03-18 03:58:57.234 -07 000000590 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 14 ms.
17-03-18 03:58:57.234 -07 000000590 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 19 ms.
17-03-18 03:58:57.234 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms.
17-03-18 03:58:57.234 -07 000000579 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 19 ms.
17-03-18 03:58:57.254 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 413 413 199 199 36595 150\n [Camera]
17-03-18 03:58:57.454 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 03:58:57.864 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 605
17-03-18 03:58:57.864 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 605
17-03-18 03:58:57.864 -07 000000585 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:58:57.864 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 605
17-03-18 03:58:57.874 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 605
17-03-18 03:58:57.874 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:58:57.874 -07 000000585 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:58:57.874 -07 000000585 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-18 03:58:57.874 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:58:57.874 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) start.
17-03-18 03:58:58.064 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36595 800
17-03-18 03:58:58.204 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning grn on 948
17-03-18 03:58:58.264 -07 000000585 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 389 ms.
17-03-18 03:58:58.264 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) end. Duration was 386 ms.
17-03-18 03:58:58.264 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-18 03:58:58.264 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:58:58.264 -07 000000585 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-18 03:58:58.264 -07 000000585 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:58:58.264 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 03:58:58.264 -07 000000585 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 03:58:58.264 -07 000000585 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 03:58:58.274 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-18 03:58:58.404 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1147
17-03-18 03:58:58.404 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1147
17-03-18 03:58:58.404 -07 000000585 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:58:58.414 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1147
17-03-18 03:58:58.414 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1147
17-03-18 03:58:58.414 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:58:58.414 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:58:58.414 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 03:58:58.414 -07 000000585 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:58:58.414 -07 000000585 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 03:58:58.594 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP 1340
17-03-18 03:58:58.594 -07 000000424 INF: FPGA: Recv CAMDBLSNAP
17-03-18 03:58:58.594 -07 000000610 INF: FPGA: 'CAMDBLSNAP 413 413 199 199 36595 150' command took 2 ms to send, 1339 ms to get response, and 1360 ms overall
17-03-18 03:58:58.604 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 03:58:58.604 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 17 at Y-position 72.34912109375, Z-Position -0.166738284735358. ------
17-03-18 03:58:58.604 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 03:58:58.604 -07 000000561 INF: Y Motor: MoveYZ optimized starting. Moving Y to 73.1926 mm, moving Z to -0.17323 mm
17-03-18 03:58:58.604 -07 000000561 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 03:58:58.814 -07 000000585 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 399 ms.
17-03-18 03:58:58.814 -07 000000585 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 03:58:58.814 -07 000000585 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:58:58.814 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 404 ms.
17-03-18 03:58:58.814 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-18 03:58:58.814 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:58:58.814 -07 000000585 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 03:58:58.814 -07 000000585 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms.
17-03-18 03:58:58.824 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:58:58.824 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 415 ms.
17-03-18 03:58:58.834 -07 000000585 INF: Y Motor: Entering MoveAbsStepped (target = 117108 steps, sync = True, waitForSettling = True)
17-03-18 03:58:58.834 -07 000000585 INF: Y Motor: Moving to 73.1926 mm, started at 72.3491 mm, delta = 0.8435 mm
17-03-18 03:58:58.834 -07 000000585 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:58:58.834 -07 000000462 INF: FPGA: Recv FOCMRRCUR 
17-03-18 03:58:58.834 -07 000000462 INF: FPGA: Recv YRDPOS 148171
17-03-18 03:58:58.834 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 227 ms to get response, and 230 ms overall
17-03-18 03:58:58.834 -07 000000462 INF: Z Motor: Entering MoveAbsStepped (DAC = 37843, sync = True, waitForSettling = False)
17-03-18 03:58:58.834 -07 000000462 INF: Z Motor: Moving to -0.173234 mm, started at -0.166738 mm, distance = -6.50 um
17-03-18 03:58:58.844 -07 000000585 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:58:58.844 -07 000000585 INF: Y Motor: Encoder = 148171 = motor step 115758.6 = 72.3491 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:58:58.844 -07 000000585 INF: Y Motor: Last commanded position = 72.3626 mm (115780.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 03:58:58.844 -07 000000585 INF: Y Motor: Moving 1350 steps-28
17-03-18 03:58:58.844 -07 000000462 INF: FPGA: Xmit ZDACW 37843\n [Z Motor]
17-03-18 03:58:58.854 -07 000000424 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 03:58:58.864 -07 000000585 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 03:58:59.824 -07 000000437 INF: FPGA: Recv ZDACW
17-03-18 03:58:59.824 -07 000000437 INF: FPGA: Recv FOCMRRFOC
17-03-18 03:58:59.824 -07 000000437 INF: FPGA: Recv YMVTILE
17-03-18 03:58:59.824 -07 000000424 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 960 ms to get response, and 983 ms overall
17-03-18 03:58:59.824 -07 000000462 INF: FPGA: 'ZDACW 37843' command took 3 ms to send, 970 ms to get response, and 982 ms overall
17-03-18 03:58:59.824 -07 000000462 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:58:59.824 -07 000000585 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 950 ms to get response, and 977 ms overall
17-03-18 03:58:59.824 -07 000000424 INF: FPGA: Recv ZDACR 37843
17-03-18 03:58:59.834 -07 000000462 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 03:58:59.834 -07 000000462 INF: Z Motor: MoveAbsStepped took 991 ms (did NOT wait for settling yet))
17-03-18 03:58:59.864 -07 000000585 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:58:59.874 -07 000000437 INF: FPGA: Recv YRDPOS 149864
17-03-18 03:58:59.874 -07 000000585 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 03:58:59.874 -07 000000585 INF: Y Motor: Encoder = 149864 = motor step 117081.3 = 73.1758 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:58:59.874 -07 000000585 INF: Y Motor: Position error before settling (table move) = -34 encoder counts (-0.017 mm)
17-03-18 03:58:59.874 -07 000000585 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 978 ms, distance = 0.843 mm, average velocity = 0.862 mm/sec
17-03-18 03:59:00.824 -07 000000585 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:59:00.824 -07 000000012 INF: FPGA: Recv YRDPOS 149864
17-03-18 03:59:00.834 -07 000000585 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:59:00.834 -07 000000585 INF: Y Motor: Encoder = 149864 = motor step 117081.3 = 73.1758 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:59:00.864 -07 000000585 INF: Y Motor: After move to 73.192604, error = -0.016823, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 03:59:00.864 -07 000000585 INF: Y Motor: Position error after settling (table move) = -34 encoder counts (-0.017 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 03:59:00.864 -07 000000585 INF: Y Motor: Moved to 73.1758 after 2030 ms (table move)
17-03-18 03:59:00.864 -07 000000561 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173234 mm (DAC = 37843)
17-03-18 03:59:00.864 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:00.864 -07 000000462 INF: FPGA: Recv ZSGSRD 36259
17-03-18 03:59:00.874 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 03:59:00.874 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:00.874 -07 000000462 INF: FPGA: Recv ZSGSRD 36256
17-03-18 03:59:00.884 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:00.884 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:00.884 -07 000000585 INF: FPGA: Recv ZSGSRD 36252
17-03-18 03:59:00.894 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:00.894 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:00.894 -07 000000585 INF: FPGA: Recv ZSGSRD 36258
17-03-18 03:59:00.904 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:00.904 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:00.904 -07 000000467 INF: FPGA: Recv ZSGSRD 36253
17-03-18 03:59:00.914 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:00.914 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:00.914 -07 000000467 INF: FPGA: Recv ZSGSRD 36251
17-03-18 03:59:00.924 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:00.924 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:00.924 -07 000000467 INF: FPGA: Recv ZSGSRD 36261
17-03-18 03:59:00.934 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:00.934 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:00.934 -07 000000618 INF: FPGA: Recv ZSGSRD 36258
17-03-18 03:59:00.944 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:00.944 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:00.944 -07 000000467 INF: FPGA: Recv ZSGSRD 36255
17-03-18 03:59:00.954 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:00.954 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:00.954 -07 000000608 INF: FPGA: Recv ZSGSRD 36257
17-03-18 03:59:00.964 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:00.964 -07 000000561 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:59:00.964 -07 000000591 INF: FPGA: Recv ZPIEZORD 32283
17-03-18 03:59:00.974 -07 000000561 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:00.974 -07 000000561 INF: Z Motor: Piezo is near 49.0 V (nominally 0 to 100 V), expect near 57.7 V, since DAC is at 5.774 V. Piezo Error = -8.8 V.
17-03-18 03:59:00.974 -07 000000561 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.2 um, Read 10 ADC samples: Avg = 36256 (-172.4 uncal um), Error = 0.9 uncal um, Median = 36256 (-172.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 36251 (-172.3 uncal um), Max = 36261 (-172.4 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 03:59:00.974 -07 000000561 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36256, posNoise = 5, negNoise = 5
17-03-18 03:59:00.974 -07 000000561 INF: Z Motor: After move to -0.173234, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:59:00.974 -07 000000561 INF: Z Motor: Settle wait time = 2026 ms, measure time = 106 ms (allowed 150 ms), total time = 2132 ms
17-03-18 03:59:00.974 -07 000000561 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-18 03:59:01.024 -07 000000561 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2413 ms
17-03-18 03:59:01.024 -07 000000561 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 03:59:01.024 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:59:01.024 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:59:01.024 -07 000000012 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:59:01.024 -07 000000591 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:59:01.024 -07 000000502 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 03:59:01.024 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:59:01.024 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 03:59:01.024 -07 000000502 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 03:59:01.034 -07 000000502 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 03:59:01.034 -07 000000502 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 03:59:01.044 -07 000000502 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 8 ms.
17-03-18 03:59:01.044 -07 000000502 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 13 ms.
17-03-18 03:59:01.044 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 03:59:01.094 -07 000000618 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 03:59:01.394 -07 000000424 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 03:59:01.394 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 03:59:01.394 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 03:59:01.394 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 675221432, 0x0, 559484976) start.
17-03-18 03:59:01.424 -07 000000467 INF: FPGA: Recv @CAMSNAP 380
17-03-18 03:59:01.434 -07 000000480 INF: FPGA: Recv CAMSNAP
17-03-18 03:59:01.434 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 380 ms to get response, and 384 ms overall
17-03-18 03:59:01.504 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 675221432, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 03:59:01.504 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:59:01.514 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 03:59:01.514 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 03:59:01.534 -07 000000591 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 03:59:01.534 -07 000000608 INF: Autofocus start
17-03-18 03:59:01.534 -07 000000608 INF: MeasureProfile start
17-03-18 03:59:01.534 -07 000000424 INF: FPGA: Recv FOCMRRCUR 
17-03-18 03:59:01.544 -07 000000591 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 03:59:01.544 -07 000000591 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 03:59:01.544 -07 000000608 INF: MeasureProfile done
17-03-18 03:59:01.544 -07 000000608 INF: X=-32  Z correction [um]=-0.2344
17-03-18 03:59:01.544 -07 000000608 INF: Autofocus finished
17-03-18 03:59:01.624 -07 000000608 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 03:59:01.624 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 118. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1701, R2=1769, Total=3470. Warn if over 250 bubbles per interval.
17-03-18 03:59:01.744 -07 000000618 INF: FPGA: Recv FOCMRRIMG
17-03-18 03:59:01.744 -07 000000591 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 03:59:01.744 -07 000000610 INF: ------------ Scan Snapping tile 17 at Y-position 73.17578125, Z-position -0.17323958742282. ----------
17-03-18 03:59:01.744 -07 000000610 INF: Cycle	119	Tile	17	Exposure Settings		A	413	G	199	T	199	C	413
17-03-18 03:59:01.754 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36304, sync = True, waitForSettling = True)
17-03-18 03:59:01.754 -07 000000610 INF: Z Motor: Moving to -0.166189 mm, started at -0.173240 mm, distance = 7.05 um
17-03-18 03:59:01.754 -07 000000610 INF: FPGA: Xmit ZDACW 36304\n [Z Motor]
17-03-18 03:59:01.754 -07 000000585 INF: FPGA: Recv ZDACW
17-03-18 03:59:01.764 -07 000000610 INF: FPGA: 'ZDACW 36304' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:01.764 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:59:01.764 -07 000000424 INF: FPGA: Recv ZDACR 36304
17-03-18 03:59:01.774 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:01.774 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 03:59:01.924 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:01.924 -07 000000462 INF: FPGA: Recv ZSGSRD 35164
17-03-18 03:59:01.934 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:01.934 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:01.934 -07 000000561 INF: FPGA: Recv ZSGSRD 35163
17-03-18 03:59:01.944 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:01.944 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:01.944 -07 000000012 INF: FPGA: Recv ZSGSRD 35162
17-03-18 03:59:01.954 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 03:59:01.954 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:01.954 -07 000000608 INF: FPGA: Recv ZSGSRD 35155
17-03-18 03:59:01.964 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:01.964 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:01.964 -07 000000618 INF: FPGA: Recv ZSGSRD 35160
17-03-18 03:59:01.974 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:01.974 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:01.974 -07 000000608 INF: FPGA: Recv ZSGSRD 35158
17-03-18 03:59:01.984 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:01.984 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:01.984 -07 000000618 INF: FPGA: Recv ZSGSRD 35156
17-03-18 03:59:01.994 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:01.994 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:01.994 -07 000000502 INF: FPGA: Recv ZSGSRD 35160
17-03-18 03:59:02.004 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:02.004 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:02.004 -07 000000618 INF: FPGA: Recv ZSGSRD 35159
17-03-18 03:59:02.014 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:02.014 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:02.014 -07 000000012 INF: FPGA: Recv ZSGSRD 35162
17-03-18 03:59:02.024 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:02.024 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:59:02.024 -07 000000502 INF: FPGA: Recv ZPIEZORD 30786
17-03-18 03:59:02.034 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:02.034 -07 000000610 INF: Z Motor: Piezo is near 45.8 V (nominally 0 to 100 V), expect near 55.4 V, since DAC is at 5.540 V. Piezo Error = -9.6 V.
17-03-18 03:59:02.034 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.2 um, Read 10 ADC samples: Avg = 35160 (-165.3 uncal um), Error = 0.9 uncal um, Median = 35160 (-165.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35155 (-165.3 uncal um), Max = 35164 (-165.4 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 03:59:02.034 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35160, posNoise = 4, negNoise = 5
17-03-18 03:59:02.034 -07 000000610 INF: Z Motor: After move to -0.166189, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:59:02.034 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-18 03:59:02.034 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:59:02.034 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:59:02.034 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:59:02.034 -07 000000591 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 03:59:02.034 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 03:59:02.034 -07 000000585 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 03:59:02.034 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:59:02.034 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:59:02.034 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 03:59:02.034 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 03:59:02.034 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 03:59:02.034 -07 000000585 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 03:59:02.044 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-18 03:59:02.044 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 03:59:02.044 -07 000000585 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 03:59:02.044 -07 000000585 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 03:59:02.054 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-18 03:59:02.054 -07 000000591 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 03:59:02.054 -07 000000585 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 03:59:02.054 -07 000000585 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 23 ms.
17-03-18 03:59:02.064 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 413 413 199 199 36481 150\n [Camera]
17-03-18 03:59:02.264 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning red on 193
17-03-18 03:59:02.604 -07 000000591 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 119, FrontChillerTemperature: 3.990831,
17-03-18 03:59:02.674 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 605
17-03-18 03:59:02.674 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 605
17-03-18 03:59:02.674 -07 000000437 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:59:02.674 -07 000000437 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:59:02.674 -07 000000437 INF: Camera: sBCa_ReadImage(785074288, 1140442840, 0x0, 391868352) start.
17-03-18 03:59:02.674 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 605
17-03-18 03:59:02.674 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 605
17-03-18 03:59:02.674 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:59:02.674 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:59:02.674 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 1175865104, 0x0, 418435064) start.
17-03-18 03:59:02.864 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36481 798
17-03-18 03:59:03.014 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning grn on 948
17-03-18 03:59:03.074 -07 000000437 INF: Camera: sBCa_ReadImage(785074288, 1140442840, 0x0, 391868352) end. Duration was 400 ms.
17-03-18 03:59:03.074 -07 000000437 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 03:59:03.074 -07 000000437 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:59:03.074 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 1175865104, 0x0, 418435064) end. Duration was 400 ms.
17-03-18 03:59:03.074 -07 000000437 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:59:03.074 -07 000000437 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 03:59:03.074 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 03:59:03.074 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:59:03.084 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:59:03.084 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-18 03:59:03.214 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1147
17-03-18 03:59:03.214 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1147
17-03-18 03:59:03.334 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1147
17-03-18 03:59:03.334 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1147
17-03-18 03:59:03.334 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:59:03.334 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:59:03.344 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:59:03.344 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) start.
17-03-18 03:59:03.344 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:59:03.344 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-18 03:59:03.404 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP 1339
17-03-18 03:59:03.404 -07 000000561 INF: FPGA: Recv CAMDBLSNAP
17-03-18 03:59:03.404 -07 000000610 INF: FPGA: 'CAMDBLSNAP 413 413 199 199 36481 150' command took 2 ms to send, 1337 ms to get response, and 1347 ms overall
17-03-18 03:59:03.414 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 03:59:03.414 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 18 at Y-position 73.17578125, Z-Position -0.16619865091545. ------
17-03-18 03:59:03.414 -07 000000437 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 03:59:03.414 -07 000000608 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.0226 mm, moving Z to -0.17214 mm
17-03-18 03:59:03.414 -07 000000608 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 03:59:03.414 -07 000000561 INF: Y Motor: Entering MoveAbsStepped (target = 118436 steps, sync = True, waitForSettling = True)
17-03-18 03:59:03.414 -07 000000561 INF: Y Motor: Moving to 74.0226 mm, started at 73.1758 mm, delta = 0.8468 mm
17-03-18 03:59:03.424 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:59:03.734 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) end. Duration was 394 ms.
17-03-18 03:59:03.734 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-18 03:59:03.734 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:59:03.744 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 396 ms.
17-03-18 03:59:03.744 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:59:03.744 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 03:59:03.744 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:59:03.744 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:59:03.744 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms.
17-03-18 03:59:03.744 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-18 03:59:03.754 -07 000000502 INF: Z Motor: Entering MoveAbsStepped (DAC = 37604, sync = True, waitForSettling = False)
17-03-18 03:59:03.754 -07 000000502 INF: Z Motor: Moving to -0.172140 mm, started at -0.166199 mm, distance = -5.94 um
17-03-18 03:59:03.754 -07 000000502 INF: FPGA: Xmit ZDACW 37604\n [Z Motor]
17-03-18 03:59:03.764 -07 000000591 INF: FPGA: Recv FOCMRRCUR 
17-03-18 03:59:03.764 -07 000000591 INF: FPGA: Recv YRDPOS 149864
17-03-18 03:59:03.764 -07 000000591 INF: FPGA: Recv ZDACW
17-03-18 03:59:03.764 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 331 ms to get response, and 344 ms overall
17-03-18 03:59:03.764 -07 000000561 INF: Y Motor: Encoder = 149864 = motor step 117081.3 = 73.1758 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:59:03.764 -07 000000561 INF: Y Motor: Last commanded position = 73.1926 mm (117108.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 03:59:03.764 -07 000000561 INF: Y Motor: Moving 1355 steps-34
17-03-18 03:59:03.764 -07 000000561 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 03:59:03.764 -07 000000437 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 341 ms to get response, and 347 ms overall
17-03-18 03:59:03.764 -07 000000502 INF: FPGA: 'ZDACW 37604' command took 0 ms to send, 1 ms to get response, and 4 ms overall
17-03-18 03:59:03.774 -07 000000437 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 03:59:03.784 -07 000000502 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:59:03.784 -07 000000591 INF: FPGA: Recv ZDACR 37604
17-03-18 03:59:03.794 -07 000000502 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-18 03:59:03.794 -07 000000502 INF: Z Motor: MoveAbsStepped took 33 ms (did NOT wait for settling yet))
17-03-18 03:59:03.974 -07 000000502 INF: FPGA: Recv FOCMRRFOC
17-03-18 03:59:03.974 -07 000000437 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 210 ms overall
17-03-18 03:59:04.144 -07 000000437 INF: FPGA: Recv YMVTILE
17-03-18 03:59:04.144 -07 000000561 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 370 ms to get response, and 378 ms overall
17-03-18 03:59:04.184 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:59:04.184 -07 000000591 INF: FPGA: Recv YRDPOS 151567
17-03-18 03:59:04.194 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:04.194 -07 000000561 INF: Y Motor: Encoder = 151567 = motor step 118411.7 = 74.0073 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:59:04.194 -07 000000561 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-18 03:59:04.194 -07 000000561 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 378 ms, distance = 0.847 mm, average velocity = 2.240 mm/sec
17-03-18 03:59:05.144 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:59:05.144 -07 000000437 INF: FPGA: Recv YRDPOS 151568
17-03-18 03:59:05.154 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:59:05.154 -07 000000561 INF: Y Motor: Encoder = 151568 = motor step 118412.5 = 74.0078 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:59:05.174 -07 000000561 INF: Y Motor: After move to 74.022606, error = -0.014793, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 03:59:05.174 -07 000000561 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 03:59:05.174 -07 000000561 INF: Y Motor: Moved to 74.0078 after 1757 ms (table move)
17-03-18 03:59:05.174 -07 000000608 INF: Z Motor: EndOfMoveAbsStepped: target = -0.172140 mm (DAC = 37604)
17-03-18 03:59:05.174 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:05.184 -07 000000437 INF: FPGA: Recv ZSGSRD 36089
17-03-18 03:59:05.184 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 03:59:05.184 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:05.184 -07 000000591 INF: FPGA: Recv ZSGSRD 36089
17-03-18 03:59:05.194 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:05.194 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:05.194 -07 000000437 INF: FPGA: Recv ZSGSRD 36086
17-03-18 03:59:05.204 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:05.204 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:05.204 -07 000000437 INF: FPGA: Recv ZSGSRD 36081
17-03-18 03:59:05.214 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:05.214 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:05.214 -07 000000502 INF: FPGA: Recv ZSGSRD 36084
17-03-18 03:59:05.224 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:05.224 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:05.224 -07 000000591 INF: FPGA: Recv ZSGSRD 36087
17-03-18 03:59:05.234 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:05.234 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:05.234 -07 000000561 INF: FPGA: Recv ZSGSRD 36085
17-03-18 03:59:05.244 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:05.244 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:05.244 -07 000000561 INF: FPGA: Recv ZSGSRD 36085
17-03-18 03:59:05.254 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:05.254 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:05.254 -07 000000502 INF: FPGA: Recv ZSGSRD 36093
17-03-18 03:59:05.264 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:05.264 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:05.264 -07 000000561 INF: FPGA: Recv ZSGSRD 36089
17-03-18 03:59:05.274 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:05.274 -07 000000608 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:59:05.274 -07 000000591 INF: FPGA: Recv ZPIEZORD 32035
17-03-18 03:59:05.284 -07 000000608 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:05.284 -07 000000608 INF: Z Motor: Piezo is near 48.4 V (nominally 0 to 100 V), expect near 57.4 V, since DAC is at 5.738 V. Piezo Error = -8.9 V.
17-03-18 03:59:05.284 -07 000000608 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.1 um, Read 10 ADC samples: Avg = 36087 (-171.3 uncal um), Error = 0.9 uncal um, Median = 36086 (-171.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 36081 (-171.2 uncal um), Max = 36093 (-171.3 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 03:59:05.284 -07 000000608 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36087, posNoise = 6, negNoise = 6
17-03-18 03:59:05.284 -07 000000608 INF: Z Motor: After move to -0.172140, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:59:05.284 -07 000000608 INF: Z Motor: Settle wait time = 1420 ms, measure time = 103 ms (allowed 150 ms), total time = 1523 ms
17-03-18 03:59:05.284 -07 000000608 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-18 03:59:05.334 -07 000000608 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1916 ms
17-03-18 03:59:05.334 -07 000000608 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 03:59:05.334 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:59:05.334 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:59:05.334 -07 000000591 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:59:05.344 -07 000000579 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 03:59:05.344 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:59:05.344 -07 000000437 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:59:05.344 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 03:59:05.344 -07 000000579 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 03:59:05.344 -07 000000579 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 03:59:05.344 -07 000000579 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 03:59:05.354 -07 000000579 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 03:59:05.354 -07 000000579 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-18 03:59:05.354 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 03:59:05.404 -07 000000608 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 03:59:05.704 -07 000000625 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 03:59:05.704 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 03:59:05.704 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 03:59:05.704 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 639799168, 0x0, 559484976) start.
17-03-18 03:59:05.744 -07 000000591 INF: FPGA: Recv @CAMSNAP 380
17-03-18 03:59:05.744 -07 000000502 INF: FPGA: Recv CAMSNAP
17-03-18 03:59:05.744 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 381 ms to get response, and 388 ms overall
17-03-18 03:59:05.814 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 639799168, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 03:59:05.814 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:59:05.814 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 03:59:05.824 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 03:59:05.844 -07 000000625 INF: Autofocus start
17-03-18 03:59:05.844 -07 000000625 INF: MeasureProfile start
17-03-18 03:59:05.844 -07 000000608 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 03:59:05.844 -07 000000579 INF: FPGA: Recv FOCMRRCUR 
17-03-18 03:59:05.854 -07 000000608 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 03:59:05.854 -07 000000608 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 03:59:05.854 -07 000000625 INF: MeasureProfile done
17-03-18 03:59:05.854 -07 000000625 INF: X=16  Z correction [um]=0.01042744
17-03-18 03:59:05.854 -07 000000625 INF: Autofocus finished
17-03-18 03:59:06.054 -07 000000561 INF: FPGA: Recv FOCMRRIMG
17-03-18 03:59:06.054 -07 000000608 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 03:59:06.054 -07 000000610 INF: ------------ Scan Snapping tile 18 at Y-position 74.0078125, Z-position -0.172153895570863. ----------
17-03-18 03:59:06.054 -07 000000610 INF: Cycle	119	Tile	18	Exposure Settings		A	413	G	199	T	199	C	413
17-03-18 03:59:06.064 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36119, sync = True, waitForSettling = True)
17-03-18 03:59:06.064 -07 000000610 INF: Z Motor: Moving to -0.165342 mm, started at -0.172154 mm, distance = 6.81 um
17-03-18 03:59:06.064 -07 000000610 INF: FPGA: Xmit ZDACW 36119\n [Z Motor]
17-03-18 03:59:06.064 -07 000000502 INF: FPGA: Recv ZDACW
17-03-18 03:59:06.074 -07 000000610 INF: FPGA: 'ZDACW 36119' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:06.074 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:59:06.074 -07 000000437 INF: FPGA: Recv ZDACR 36119
17-03-18 03:59:06.084 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:06.084 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 03:59:06.234 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:06.234 -07 000000608 INF: FPGA: Recv ZSGSRD 35034
17-03-18 03:59:06.244 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:06.244 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:06.244 -07 000000625 INF: FPGA: Recv ZSGSRD 35026
17-03-18 03:59:06.254 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:06.254 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:06.254 -07 000000591 INF: FPGA: Recv ZSGSRD 35026
17-03-18 03:59:06.264 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:06.264 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:06.264 -07 000000512 INF: FPGA: Recv ZSGSRD 35027
17-03-18 03:59:06.274 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:06.274 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:06.274 -07 000000608 INF: FPGA: Recv ZSGSRD 35030
17-03-18 03:59:06.284 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:06.284 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:06.284 -07 000000437 INF: FPGA: Recv ZSGSRD 35033
17-03-18 03:59:06.294 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:06.294 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:06.294 -07 000000561 INF: FPGA: Recv ZSGSRD 35023
17-03-18 03:59:06.304 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:06.304 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:06.304 -07 000000579 INF: FPGA: Recv ZSGSRD 35030
17-03-18 03:59:06.314 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 03:59:06.314 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:06.314 -07 000000625 INF: FPGA: Recv ZSGSRD 35027
17-03-18 03:59:06.324 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:06.324 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:06.324 -07 000000512 INF: FPGA: Recv ZSGSRD 35027
17-03-18 03:59:06.334 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:06.334 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:59:06.334 -07 000000625 INF: FPGA: Recv ZPIEZORD 30654
17-03-18 03:59:06.344 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 03:59:06.344 -07 000000610 INF: Z Motor: Piezo is near 45.5 V (nominally 0 to 100 V), expect near 55.1 V, since DAC is at 5.511 V. Piezo Error = -9.6 V.
17-03-18 03:59:06.344 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -165.3 um, Read 10 ADC samples: Avg = 35028 (-164.5 uncal um), Error = 0.9 uncal um, Median = 35027 (-164.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35023 (-164.5 uncal um), Max = 35034 (-164.5 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 03:59:06.344 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35028, posNoise = 6, negNoise = 5
17-03-18 03:59:06.344 -07 000000610 INF: Z Motor: After move to -0.165342, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:59:06.344 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-18 03:59:06.344 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:59:06.344 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:59:06.344 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:59:06.344 -07 000000591 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:59:06.344 -07 000000608 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 03:59:06.344 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:59:06.344 -07 000000625 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 03:59:06.344 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 03:59:06.344 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 03:59:06.344 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 03:59:06.344 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 03:59:06.344 -07 000000625 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 03:59:06.344 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 03:59:06.354 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 03:59:06.354 -07 000000625 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 03:59:06.354 -07 000000625 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 03:59:06.364 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 03:59:06.364 -07 000000608 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 03:59:06.364 -07 000000625 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-18 03:59:06.364 -07 000000625 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 03:59:06.374 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 413 413 199 199 36295 150\n [Camera]
17-03-18 03:59:06.574 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 03:59:06.624 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 03:59:06.624 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 118. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1701, R2=1769, Total=3470. Warn if over 250 bubbles per interval.
17-03-18 03:59:06.984 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 605
17-03-18 03:59:06.984 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 605
17-03-18 03:59:06.984 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:59:06.984 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:59:06.984 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 650069944, 0x0, 391868352) start.
17-03-18 03:59:06.984 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 605
17-03-18 03:59:06.984 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 605
17-03-18 03:59:06.984 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:59:07.104 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:59:07.104 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-18 03:59:07.174 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36295 798
17-03-18 03:59:07.324 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP turning grn on 948
17-03-18 03:59:07.374 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 650069944, 0x0, 391868352) end. Duration was 387 ms.
17-03-18 03:59:07.374 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-18 03:59:07.374 -07 000000625 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:59:07.374 -07 000000625 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:59:07.374 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-18 03:59:07.484 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 379 ms.
17-03-18 03:59:07.484 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-18 03:59:07.484 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:59:07.484 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-18 03:59:07.494 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 503 ms.
17-03-18 03:59:07.524 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1147
17-03-18 03:59:07.524 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1147
17-03-18 03:59:07.524 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:59:07.524 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1147
17-03-18 03:59:07.524 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1147
17-03-18 03:59:07.524 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:59:07.524 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:59:07.524 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 03:59:07.534 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:59:07.534 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) start.
17-03-18 03:59:07.714 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP 1340
17-03-18 03:59:07.714 -07 000000437 INF: FPGA: Recv CAMDBLSNAP
17-03-18 03:59:07.714 -07 000000610 INF: FPGA: 'CAMDBLSNAP 413 413 199 199 36295 150' command took 2 ms to send, 1337 ms to get response, and 1347 ms overall
17-03-18 03:59:07.714 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 03:59:07.714 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 19 at Y-position 74.0078125, Z-Position -0.165350654912738. ------
17-03-18 03:59:07.724 -07 000000608 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 03:59:07.724 -07 000000579 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.8526 mm, moving Z to -0.17160 mm
17-03-18 03:59:07.724 -07 000000579 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 03:59:07.724 -07 000000437 INF: FPGA: Recv FOCMRRCUR 
17-03-18 03:59:07.724 -07 000000012 INF: Y Motor: Entering MoveAbsStepped (target = 119764 steps, sync = True, waitForSettling = True)
17-03-18 03:59:07.724 -07 000000012 INF: Y Motor: Moving to 74.8526 mm, started at 74.0078 mm, delta = 0.8448 mm
17-03-18 03:59:07.724 -07 000000480 INF: Z Motor: Entering MoveAbsStepped (DAC = 37486, sync = True, waitForSettling = False)
17-03-18 03:59:07.724 -07 000000480 INF: Z Motor: Moving to -0.171600 mm, started at -0.165351 mm, distance = -6.25 um
17-03-18 03:59:07.734 -07 000000608 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 03:59:07.734 -07 000000480 INF: FPGA: Xmit ZDACW 37486\n [Z Motor]
17-03-18 03:59:07.734 -07 000000479 INF: FPGA: Recv ZDACW
17-03-18 03:59:07.744 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:59:07.744 -07 000000480 INF: FPGA: 'ZDACW 37486' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:59:07.744 -07 000000462 INF: FPGA: Recv YRDPOS 151568
17-03-18 03:59:07.754 -07 000000608 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 03:59:07.754 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 21 ms overall
17-03-18 03:59:07.754 -07 000000012 INF: Y Motor: Encoder = 151568 = motor step 118412.5 = 74.0078 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:59:07.754 -07 000000012 INF: Y Motor: Last commanded position = 74.0226 mm (118436.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 03:59:07.754 -07 000000012 INF: Y Motor: Moving 1352 steps-31
17-03-18 03:59:07.764 -07 000000480 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:59:07.764 -07 000000447 INF: FPGA: Recv ZDACR 37486
17-03-18 03:59:07.774 -07 000000012 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 03:59:07.774 -07 000000480 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 03:59:07.774 -07 000000480 INF: Z Motor: MoveAbsStepped took 41 ms (did NOT wait for settling yet))
17-03-18 03:59:07.924 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) end. Duration was 397 ms.
17-03-18 03:59:07.924 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 03:59:07.924 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:59:07.934 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 401 ms.
17-03-18 03:59:07.934 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 03:59:07.934 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:59:07.934 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 03:59:07.934 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-18 03:59:07.934 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:59:07.944 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-18 03:59:07.954 -07 000000561 INF: FPGA: Recv FOCMRRFOC
17-03-18 03:59:07.954 -07 000000608 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 195 ms to get response, and 225 ms overall
17-03-18 03:59:07.964 -07 000000437 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 119, FrontChillerTemperature: 4.027603,
17-03-18 03:59:08.144 -07 000000590 INF: FPGA: Recv YMVTILE
17-03-18 03:59:08.144 -07 000000012 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 03:59:08.174 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:59:08.184 -07 000000437 INF: FPGA: Recv YRDPOS 153254
17-03-18 03:59:08.184 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 03:59:08.184 -07 000000012 INF: Y Motor: Encoder = 153254 = motor step 119729.7 = 74.8311 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:59:08.184 -07 000000012 INF: Y Motor: Position error before settling (table move) = -44 encoder counts (-0.021 mm)
17-03-18 03:59:08.184 -07 000000012 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.845 mm, average velocity = 2.128 mm/sec
17-03-18 03:59:09.134 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:59:09.134 -07 000000502 INF: FPGA: Recv YRDPOS 153255
17-03-18 03:59:09.144 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:09.144 -07 000000012 INF: Y Motor: Encoder = 153255 = motor step 119730.5 = 74.8315 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:59:09.154 -07 000000012 INF: Y Motor: After move to 74.852608, error = -0.021065, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 03:59:09.154 -07 000000012 INF: Y Motor: Position error after settling (table move) = -43 encoder counts (-0.021 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 03:59:09.154 -07 000000012 INF: Y Motor: Moved to 74.8315 after 1431 ms (table move)
17-03-18 03:59:09.164 -07 000000579 INF: Z Motor: EndOfMoveAbsStepped: target = -0.171600 mm (DAC = 37486)
17-03-18 03:59:09.164 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:09.164 -07 000000462 INF: FPGA: Recv ZSGSRD 36000
17-03-18 03:59:09.174 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 03:59:09.174 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:09.174 -07 000000502 INF: FPGA: Recv ZSGSRD 36000
17-03-18 03:59:09.184 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:09.184 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:09.184 -07 000000012 INF: FPGA: Recv ZSGSRD 35998
17-03-18 03:59:09.194 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:09.194 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:09.194 -07 000000502 INF: FPGA: Recv ZSGSRD 35998
17-03-18 03:59:09.204 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:09.204 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:09.204 -07 000000462 INF: FPGA: Recv ZSGSRD 35999
17-03-18 03:59:09.214 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:09.214 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:09.214 -07 000000012 INF: FPGA: Recv ZSGSRD 36009
17-03-18 03:59:09.224 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:09.224 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:09.224 -07 000000502 INF: FPGA: Recv ZSGSRD 36011
17-03-18 03:59:09.234 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:09.234 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:09.234 -07 000000012 INF: FPGA: Recv ZSGSRD 36006
17-03-18 03:59:09.244 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:09.244 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:09.244 -07 000000012 INF: FPGA: Recv ZSGSRD 36005
17-03-18 03:59:09.254 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:09.254 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:09.254 -07 000000625 INF: FPGA: Recv ZSGSRD 36004
17-03-18 03:59:09.264 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:09.264 -07 000000579 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:59:09.264 -07 000000462 INF: FPGA: Recv ZPIEZORD 31981
17-03-18 03:59:09.274 -07 000000579 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:09.274 -07 000000579 INF: Z Motor: Piezo is near 48.3 V (nominally 0 to 100 V), expect near 57.2 V, since DAC is at 5.720 V. Piezo Error = -8.9 V.
17-03-18 03:59:09.274 -07 000000579 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.6 um, Read 10 ADC samples: Avg = 36003 (-170.7 uncal um), Error = 0.9 uncal um, Median = 36002 (-170.7 uncal um), StdDev = 5 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 35998 (-170.7 uncal um), Max = 36011 (-170.8 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 03:59:09.274 -07 000000579 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36003, posNoise = 8, negNoise = 5
17-03-18 03:59:09.274 -07 000000579 INF: Z Motor: After move to -0.171600, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:59:09.274 -07 000000579 INF: Z Motor: Settle wait time = 1435 ms, measure time = 107 ms (allowed 150 ms), total time = 1542 ms
17-03-18 03:59:09.274 -07 000000579 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-18 03:59:09.324 -07 000000579 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1596 ms
17-03-18 03:59:09.324 -07 000000579 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 03:59:09.324 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:59:09.324 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:59:09.324 -07 000000625 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:59:09.324 -07 000000579 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 03:59:09.324 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:59:09.324 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:59:09.324 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 03:59:09.324 -07 000000579 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 03:59:09.334 -07 000000579 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 03:59:09.334 -07 000000579 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 03:59:09.334 -07 000000579 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 03:59:09.334 -07 000000579 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 03:59:09.344 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 03:59:09.384 -07 000000579 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 03:59:09.684 -07 000000625 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 03:59:09.684 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 03:59:09.684 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 03:59:09.684 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 579324120, 0x0, 559484976) start.
17-03-18 03:59:09.724 -07 000000579 INF: FPGA: Recv @CAMSNAP 380
17-03-18 03:59:09.724 -07 000000502 INF: FPGA: Recv CAMSNAP
17-03-18 03:59:09.724 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 375 ms to get response, and 384 ms overall
17-03-18 03:59:09.804 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 579324120, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 03:59:09.804 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:59:09.804 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 03:59:09.804 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-18 03:59:09.824 -07 000000012 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 03:59:09.824 -07 000000625 INF: Autofocus start
17-03-18 03:59:09.824 -07 000000625 INF: MeasureProfile start
17-03-18 03:59:09.824 -07 000000579 INF: FPGA: Recv FOCMRRCUR 
17-03-18 03:59:09.834 -07 000000012 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 03:59:09.834 -07 000000012 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 03:59:09.834 -07 000000625 INF: MeasureProfile done
17-03-18 03:59:09.834 -07 000000625 INF: X=16  Z correction [um]=0.01042744
17-03-18 03:59:09.834 -07 000000625 INF: Autofocus finished
17-03-18 03:59:10.034 -07 000000625 INF: FPGA: Recv FOCMRRIMG
17-03-18 03:59:10.034 -07 000000012 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 03:59:10.034 -07 000000610 INF: ------------ Scan Snapping tile 19 at Y-position 74.83154296875, Z-position -0.171614261750955. ----------
17-03-18 03:59:10.034 -07 000000610 INF: Cycle	119	Tile	19	Exposure Settings		A	413	G	199	T	199	C	413
17-03-18 03:59:10.044 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36001, sync = True, waitForSettling = True)
17-03-18 03:59:10.044 -07 000000610 INF: Z Motor: Moving to -0.164802 mm, started at -0.171614 mm, distance = 6.81 um
17-03-18 03:59:10.044 -07 000000610 INF: FPGA: Xmit ZDACW 36001\n [Z Motor]
17-03-18 03:59:10.044 -07 000000502 INF: FPGA: Recv ZDACW
17-03-18 03:59:10.054 -07 000000610 INF: FPGA: 'ZDACW 36001' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 03:59:10.054 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:59:10.054 -07 000000625 INF: FPGA: Recv ZDACR 36001
17-03-18 03:59:10.064 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:10.064 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 03:59:10.214 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:10.214 -07 000000012 INF: FPGA: Recv ZSGSRD 34945
17-03-18 03:59:10.224 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:59:10.224 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:10.224 -07 000000462 INF: FPGA: Recv ZSGSRD 34947
17-03-18 03:59:10.234 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:10.234 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:10.234 -07 000000579 INF: FPGA: Recv ZSGSRD 34947
17-03-18 03:59:10.244 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:10.244 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:10.244 -07 000000502 INF: FPGA: Recv ZSGSRD 34943
17-03-18 03:59:10.254 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:10.254 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:10.254 -07 000000462 INF: FPGA: Recv ZSGSRD 34946
17-03-18 03:59:10.264 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:10.264 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:10.264 -07 000000625 INF: FPGA: Recv ZSGSRD 34943
17-03-18 03:59:10.274 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:10.274 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:10.274 -07 000000012 INF: FPGA: Recv ZSGSRD 34949
17-03-18 03:59:10.284 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:10.284 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:10.284 -07 000000625 INF: FPGA: Recv ZSGSRD 34944
17-03-18 03:59:10.294 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:10.294 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:10.294 -07 000000502 INF: FPGA: Recv ZSGSRD 34946
17-03-18 03:59:10.304 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:10.304 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:10.304 -07 000000012 INF: FPGA: Recv ZSGSRD 34949
17-03-18 03:59:10.314 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:59:10.314 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:59:10.314 -07 000000462 INF: FPGA: Recv ZPIEZORD 30555
17-03-18 03:59:10.324 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:10.324 -07 000000610 INF: Z Motor: Piezo is near 45.3 V (nominally 0 to 100 V), expect near 54.9 V, since DAC is at 5.493 V. Piezo Error = -9.7 V.
17-03-18 03:59:10.324 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -164.8 um, Read 10 ADC samples: Avg = 34946 (-164.0 uncal um), Error = 0.8 uncal um, Median = 34946 (-164.0 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 34943 (-163.9 uncal um), Max = 34949 (-164.0 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 03:59:10.324 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 34946, posNoise = 3, negNoise = 3
17-03-18 03:59:10.324 -07 000000610 INF: Z Motor: After move to -0.164802, error = -0.000022, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:59:10.324 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 03:59:10.324 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:59:10.324 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:59:10.324 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:59:10.324 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:59:10.324 -07 000000579 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 03:59:10.324 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:59:10.324 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 03:59:10.324 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 03:59:10.324 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 03:59:10.324 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 03:59:10.324 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 03:59:10.324 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 03:59:10.334 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 03:59:10.334 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 03:59:10.334 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 03:59:10.334 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 03:59:10.344 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 11 ms.
17-03-18 03:59:10.344 -07 000000579 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 03:59:10.344 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-18 03:59:10.344 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 03:59:10.344 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 413 413 199 199 36178 150\n [Camera]
17-03-18 03:59:10.544 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 03:59:10.954 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 605
17-03-18 03:59:10.954 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 605
17-03-18 03:59:10.954 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:59:10.954 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:59:10.954 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) start.
17-03-18 03:59:10.964 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 605
17-03-18 03:59:10.964 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 605
17-03-18 03:59:10.964 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:59:10.964 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:59:10.964 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) start.
17-03-18 03:59:11.154 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36178 798
17-03-18 03:59:11.294 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP turning grn on 948
17-03-18 03:59:11.354 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) end. Duration was 398 ms.
17-03-18 03:59:11.354 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 03:59:11.354 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:59:11.364 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:59:11.364 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 03:59:11.364 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) end. Duration was 398 ms.
17-03-18 03:59:11.364 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 03:59:11.364 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:59:11.364 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:59:11.374 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-18 03:59:11.494 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1147
17-03-18 03:59:11.504 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1147
17-03-18 03:59:11.504 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:59:11.504 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:59:11.504 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 03:59:11.504 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1147
17-03-18 03:59:11.504 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1147
17-03-18 03:59:11.504 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:59:11.504 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:59:11.504 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-18 03:59:11.624 -07 000000618 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 03:59:11.624 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 118. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1701, R2=1769, Total=3470. Warn if over 250 bubbles per interval.
17-03-18 03:59:11.694 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP 1340
17-03-18 03:59:11.694 -07 000000579 INF: FPGA: Recv CAMDBLSNAP
17-03-18 03:59:11.694 -07 000000610 INF: FPGA: 'CAMDBLSNAP 413 413 199 199 36178 150' command took 2 ms to send, 1341 ms to get response, and 1347 ms overall
17-03-18 03:59:11.904 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 405 ms.
17-03-18 03:59:11.904 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-18 03:59:11.904 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:59:11.904 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 405 ms.
17-03-18 03:59:11.904 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 405 ms.
17-03-18 03:59:11.904 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:59:11.914 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:59:11.914 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 03:59:11.914 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 413 ms.
17-03-18 03:59:11.914 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) start.
17-03-18 03:59:11.924 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 416 ms.
17-03-18 03:59:11.954 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) end. Duration was 42 ms.
17-03-18 03:59:11.954 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) start.
17-03-18 03:59:12.004 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) end. Duration was 42 ms.
17-03-18 03:59:12.004 -07 000000610 INF: Move compensator for Bottom-surface imaging.
17-03-18 03:59:12.004 -07 000000610 INF: FPGA: Xmit EMCUR 80\n [Compensator]
17-03-18 03:59:12.004 -07 000000480 INF: FPGA: Recv EMCUR 
17-03-18 03:59:12.014 -07 000000610 INF: FPGA: 'EMCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 03:59:12.014 -07 000000610 INF: FPGA: Xmit EMIN 20 40\n [Compensator]
17-03-18 03:59:12.514 -07 000000480 INF: FPGA: Recv EMIN
17-03-18 03:59:12.514 -07 000000610 INF: FPGA: 'EMIN 20 40' command took 0 ms to send, 493 ms to get response, and 502 ms overall
17-03-18 03:59:12.514 -07 000000610 INF: FPGA: Xmit EMCUR 60\n [Compensator]
17-03-18 03:59:12.514 -07 000000012 INF: FPGA: Recv EMCUR 
17-03-18 03:59:12.524 -07 000000610 INF: FPGA: 'EMCUR 60' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 03:59:12.524 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 03:59:12.524 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 1 at Y-position 74.83154296875, Z-Position -0.164823869517113. ------
17-03-18 03:59:12.524 -07 000000437 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 03:59:12.524 -07 000000467 INF: Y Motor: MoveYZ optimized starting. Moving Y to 59.9126 mm, moving Z to -0.13943 mm
17-03-18 03:59:12.524 -07 000000467 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 03:59:12.524 -07 000000618 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True)
17-03-18 03:59:12.524 -07 000000618 INF: Y Motor: Moving to 59.9126 mm, started at 74.8315 mm, delta = -14.9189 mm
17-03-18 03:59:12.524 -07 000000608 INF: Z Motor: Entering MoveAbsStepped (DAC = 30458, sync = True, waitForSettling = False)
17-03-18 03:59:12.524 -07 000000608 INF: Z Motor: Moving to -0.139428 mm, started at -0.164824 mm, distance = 25.40 um
17-03-18 03:59:12.524 -07 000000462 INF: FPGA: Recv FOCMRRCUR 
17-03-18 03:59:12.534 -07 000000437 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 03:59:12.534 -07 000000608 INF: FPGA: Xmit ZDACW 30458\n [Z Motor]
17-03-18 03:59:12.534 -07 000000502 INF: FPGA: Recv ZDACW
17-03-18 03:59:12.544 -07 000000608 INF: FPGA: 'ZDACW 30458' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:59:12.544 -07 000000608 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:59:12.544 -07 000000579 INF: FPGA: Recv ZDACR 30458
17-03-18 03:59:12.554 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:59:12.554 -07 000000608 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:59:12.554 -07 000000608 INF: Z Motor: MoveAbsStepped took 21 ms (did NOT wait for settling yet))
17-03-18 03:59:12.554 -07 000000625 INF: FPGA: Recv YRDPOS 153256
17-03-18 03:59:12.564 -07 000000437 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 03:59:12.564 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 31 ms overall
17-03-18 03:59:12.564 -07 000000618 INF: Y Motor: Encoder = 153256 = motor step 119731.3 = 74.8320 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:59:12.564 -07 000000618 INF: Y Motor: Last commanded position = 74.8526 mm (119764.2 steps), delta from last commanded position = -14.9400 mm (-23904.0 steps). UsingTableMove = False
17-03-18 03:59:12.564 -07 000000618 INF: Y Motor: Moving to 122701 encoder counts
17-03-18 03:59:12.574 -07 000000618 INF: FPGA: Xmit YMVTO 122701\n [Y Motor]
17-03-18 03:59:12.764 -07 000000012 INF: FPGA: Recv FOCMRRFOC
17-03-18 03:59:12.764 -07 000000437 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 232 ms overall
17-03-18 03:59:13.324 -07 000000012 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 119, FrontChillerTemperature: 3.996267,
17-03-18 03:59:14.194 -07 000000579 INF: FPGA: Recv YMVTO 122703 23903
17-03-18 03:59:14.194 -07 000000618 INF: FPGA: 'YMVTO 122701' command took 0 ms to send, 1618 ms to get response, and 1633 ms overall
17-03-18 03:59:14.194 -07 000000618 INF: Y Motor: Position error before settling = 2 encoder counts (0.001 mm)
17-03-18 03:59:14.194 -07 000000618 INF: Y Motor: To move from 74.832 to 59.913 (-14.919 mm) should take 23871 steps, but required 23903 steps (14.939 mm). Slippage = 0.020 mm (0.00%).
17-03-18 03:59:14.194 -07 000000618 INF: Y Motor: FPGA move command 'YMVTO 122701' took 1633 ms, distance = 14.919 mm, average velocity = 9.136 mm/sec
17-03-18 03:59:16.624 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 03:59:16.624 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 118. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1701, R2=1769, Total=3470. Warn if over 250 bubbles per interval.
17-03-18 03:59:17.044 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:59:17.044 -07 000000480 INF: FPGA: Recv YRDPOS 122697
17-03-18 03:59:17.054 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:17.054 -07 000000618 INF: Y Motor: Encoder = 122697 = motor step 95857.0 = 59.9106 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:59:17.084 -07 000000618 INF: Y Motor: After move to 59.912609, error = -0.001965, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 03:59:17.084 -07 000000618 INF: Y Motor: Position error after settling = -4 encoder counts (-0.002 mm), Delta during settling = -6 counts (-0.003 mm)
17-03-18 03:59:17.084 -07 000000618 INF: Y Motor: Moved to 59.9106 after 4559 ms
17-03-18 03:59:17.094 -07 000000467 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139428 mm (DAC = 30458)
17-03-18 03:59:17.094 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:17.094 -07 000000480 INF: FPGA: Recv ZSGSRD 30992
17-03-18 03:59:17.104 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 03:59:17.104 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:17.104 -07 000000608 INF: FPGA: Recv ZSGSRD 30995
17-03-18 03:59:17.114 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:17.114 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:17.114 -07 000000618 INF: FPGA: Recv ZSGSRD 30988
17-03-18 03:59:17.124 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:17.124 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:17.124 -07 000000618 INF: FPGA: Recv ZSGSRD 30996
17-03-18 03:59:17.134 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:17.134 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:17.134 -07 000000480 INF: FPGA: Recv ZSGSRD 30997
17-03-18 03:59:17.144 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:17.144 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:17.144 -07 000000480 INF: FPGA: Recv ZSGSRD 30988
17-03-18 03:59:17.154 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:17.154 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:17.154 -07 000000608 INF: FPGA: Recv ZSGSRD 30989
17-03-18 03:59:17.164 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:17.164 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:17.164 -07 000000618 INF: FPGA: Recv ZSGSRD 30996
17-03-18 03:59:17.174 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:17.174 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:17.174 -07 000000480 INF: FPGA: Recv ZSGSRD 30999
17-03-18 03:59:17.184 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:17.184 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:17.184 -07 000000480 INF: FPGA: Recv ZSGSRD 30998
17-03-18 03:59:17.194 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:17.194 -07 000000467 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:59:17.194 -07 000000608 INF: FPGA: Recv ZPIEZORD 26425
17-03-18 03:59:17.204 -07 000000467 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:17.204 -07 000000467 INF: Z Motor: Piezo is near 36.5 V (nominally 0 to 100 V), expect near 46.5 V, since DAC is at 4.648 V. Piezo Error = -10.0 V.
17-03-18 03:59:17.204 -07 000000467 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.4 um, Read 10 ADC samples: Avg = 30994 (-138.6 uncal um), Error = 0.8 uncal um, Median = 30996 (-138.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 30988 (-138.6 uncal um), Max = 30999 (-138.7 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 03:59:17.204 -07 000000467 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30994, posNoise = 5, negNoise = 6
17-03-18 03:59:17.204 -07 000000467 INF: Z Motor: After move to -0.139428, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:59:17.204 -07 000000467 INF: Z Motor: Settle wait time = 4564 ms, measure time = 107 ms (allowed 150 ms), total time = 4671 ms
17-03-18 03:59:17.204 -07 000000467 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-18 03:59:17.254 -07 000000467 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 4723 ms
17-03-18 03:59:17.254 -07 000000467 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 03:59:17.254 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:59:17.254 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:59:17.254 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:59:17.254 -07 000000467 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 03:59:17.254 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:59:17.254 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:59:17.254 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 03:59:17.254 -07 000000467 INF: Camera: sBCa_SetPowerMode(785074288, 1) start.
17-03-18 03:59:17.274 -07 000000467 INF: Camera: sBCa_SetPowerMode(785074288, 1) end. Duration was 19 ms.
17-03-18 03:59:17.274 -07 000000467 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 03:59:17.284 -07 000000467 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 03:59:17.284 -07 000000467 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 03:59:17.284 -07 000000467 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 03:59:17.284 -07 000000467 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 30 ms.
17-03-18 03:59:17.294 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 03:59:17.334 -07 000000467 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 03:59:17.634 -07 000000608 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 03:59:17.634 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 03:59:17.634 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 03:59:17.644 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2404584808, 0x0, 559484976) start.
17-03-18 03:59:17.674 -07 000000608 INF: FPGA: Recv @CAMSNAP 380
17-03-18 03:59:17.674 -07 000000512 INF: FPGA: Recv CAMSNAP
17-03-18 03:59:17.674 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 378 ms to get response, and 388 ms overall
17-03-18 03:59:17.754 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2404584808, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 03:59:17.754 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:59:17.754 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 03:59:17.754 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 03:59:17.774 -07 000000480 INF: Image SNR check: start
17-03-18 03:59:17.774 -07 000000618 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 03:59:17.774 -07 000000608 INF: FPGA: Recv FOCMRRCUR 
17-03-18 03:59:17.784 -07 000000618 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 03:59:17.784 -07 000000618 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 03:59:17.784 -07 000000480 INF: Image SNR check: pass  [peak (Max-Min)=126.09]
17-03-18 03:59:17.784 -07 000000480 INF: Autofocus start
17-03-18 03:59:17.784 -07 000000480 INF: MeasureProfile start
17-03-18 03:59:17.804 -07 000000480 INF: MeasureProfile done
17-03-18 03:59:17.804 -07 000000480 INF: X=-21  Z correction [um]=-0.1056272
17-03-18 03:59:17.804 -07 000000480 INF: Autofocus finished
17-03-18 03:59:17.984 -07 000000480 INF: FPGA: Recv FOCMRRIMG
17-03-18 03:59:17.984 -07 000000618 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 03:59:17.994 -07 000000610 INF: ------------ Scan Snapping tile 1 at Y-position 59.91064453125, Z-position -0.139435383132874. ----------
17-03-18 03:59:17.994 -07 000000610 INF: Cycle	119	Tile	1	Exposure Settings		A	413	G	199	T	199	C	413
17-03-18 03:59:17.994 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28948, sync = True, waitForSettling = True)
17-03-18 03:59:17.994 -07 000000610 INF: Z Motor: Moving to -0.132515 mm, started at -0.139435 mm, distance = 6.92 um
17-03-18 03:59:17.994 -07 000000610 INF: FPGA: Xmit ZDACW 28948\n [Z Motor]
17-03-18 03:59:17.994 -07 000000467 INF: FPGA: Recv ZDACW
17-03-18 03:59:18.004 -07 000000610 INF: FPGA: 'ZDACW 28948' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 03:59:18.004 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:59:18.004 -07 000000480 INF: FPGA: Recv ZDACR 28948
17-03-18 03:59:18.014 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:18.014 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 03:59:18.164 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:18.164 -07 000000512 INF: FPGA: Recv ZSGSRD 29921
17-03-18 03:59:18.174 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:59:18.174 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:18.174 -07 000000467 INF: FPGA: Recv ZSGSRD 29920
17-03-18 03:59:18.184 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:18.184 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:18.184 -07 000000512 INF: FPGA: Recv ZSGSRD 29915
17-03-18 03:59:18.194 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:18.194 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:18.194 -07 000000467 INF: FPGA: Recv ZSGSRD 29918
17-03-18 03:59:18.204 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:18.204 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:18.204 -07 000000618 INF: FPGA: Recv ZSGSRD 29921
17-03-18 03:59:18.214 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:18.214 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:18.214 -07 000000467 INF: FPGA: Recv ZSGSRD 29922
17-03-18 03:59:18.224 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:18.224 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:18.224 -07 000000512 INF: FPGA: Recv ZSGSRD 29920
17-03-18 03:59:18.234 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:18.234 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:18.234 -07 000000512 INF: FPGA: Recv ZSGSRD 29915
17-03-18 03:59:18.244 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:18.244 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:18.244 -07 000000618 INF: FPGA: Recv ZSGSRD 29918
17-03-18 03:59:18.254 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:18.254 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:18.254 -07 000000480 INF: FPGA: Recv ZSGSRD 29915
17-03-18 03:59:18.264 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:18.264 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:59:18.264 -07 000000467 INF: FPGA: Recv ZPIEZORD 25251
17-03-18 03:59:18.274 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:18.274 -07 000000610 INF: Z Motor: Piezo is near 33.9 V (nominally 0 to 100 V), expect near 44.2 V, since DAC is at 4.417 V. Piezo Error = -10.2 V.
17-03-18 03:59:18.274 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.5 um, Read 10 ADC samples: Avg = 29918 (-131.7 uncal um), Error = 0.8 uncal um, Median = 29919 (-131.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 29915 (-131.7 uncal um), Max = 29922 (-131.8 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 03:59:18.274 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29918, posNoise = 4, negNoise = 3
17-03-18 03:59:18.274 -07 000000610 INF: Z Motor: After move to -0.132515, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:59:18.274 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 03:59:18.274 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:59:18.274 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:59:18.274 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:59:18.274 -07 000000479 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 03:59:18.274 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:59:18.274 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:59:18.274 -07 000000467 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 03:59:18.274 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 03:59:18.274 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 03:59:18.274 -07 000000479 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 03:59:18.274 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 03:59:18.274 -07 000000467 INF: Camera: sBCa_SetPowerMode(785074704, 1) start.
17-03-18 03:59:18.284 -07 000000479 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 03:59:18.284 -07 000000479 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 03:59:18.294 -07 000000479 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-18 03:59:18.294 -07 000000479 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 03:59:18.294 -07 000000467 INF: Camera: sBCa_SetPowerMode(785074704, 1) end. Duration was 20 ms.
17-03-18 03:59:18.294 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 03:59:18.304 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 03:59:18.304 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 03:59:18.314 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 11 ms.
17-03-18 03:59:18.314 -07 000000467 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 36 ms.
17-03-18 03:59:18.314 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 413 413 199 199 29124 150\n [Camera]
17-03-18 03:59:18.514 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 03:59:18.684 -07 000000467 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 119, FrontChillerTemperature: 4.005817,
17-03-18 03:59:18.924 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 605
17-03-18 03:59:18.924 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 605
17-03-18 03:59:18.924 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:59:18.924 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:59:18.924 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-18 03:59:18.934 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 605
17-03-18 03:59:18.934 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 605
17-03-18 03:59:18.934 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:59:18.934 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:59:18.934 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 03:59:19.124 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29124 798
17-03-18 03:59:19.274 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning grn on 948
17-03-18 03:59:19.304 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 376 ms.
17-03-18 03:59:19.304 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-18 03:59:19.304 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:59:19.314 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:59:19.314 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 383 ms.
17-03-18 03:59:19.314 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-18 03:59:19.314 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:59:19.314 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:59:19.314 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-18 03:59:19.314 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-18 03:59:19.474 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1147
17-03-18 03:59:19.474 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1147
17-03-18 03:59:19.474 -07 000000479 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:59:19.474 -07 000000479 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:59:19.474 -07 000000479 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-18 03:59:19.474 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1147
17-03-18 03:59:19.474 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1147
17-03-18 03:59:19.474 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:59:19.474 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:59:19.474 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) start.
17-03-18 03:59:19.664 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP 1342
17-03-18 03:59:19.664 -07 000000480 INF: FPGA: Recv CAMDBLSNAP
17-03-18 03:59:19.664 -07 000000610 INF: FPGA: 'CAMDBLSNAP 413 413 199 199 29124 150' command took 4 ms to send, 1345 ms to get response, and 1349 ms overall
17-03-18 03:59:19.664 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 03:59:19.664 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 2 at Y-position 59.91064453125, Z-Position -0.132522930868339. ------
17-03-18 03:59:19.674 -07 000000618 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 03:59:19.674 -07 000000608 INF: Y Motor: MoveYZ optimized starting. Moving Y to 60.7426 mm, moving Z to -0.13894 mm
17-03-18 03:59:19.674 -07 000000608 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 03:59:19.674 -07 000000590 INF: Y Motor: Entering MoveAbsStepped (target = 97188 steps, sync = True, waitForSettling = True)
17-03-18 03:59:19.674 -07 000000590 INF: Y Motor: Moving to 60.7426 mm, started at 59.9106 mm, delta = 0.8320 mm
17-03-18 03:59:19.674 -07 000000512 INF: FPGA: Recv FOCMRRCUR 
17-03-18 03:59:19.674 -07 000000480 INF: Z Motor: Entering MoveAbsStepped (DAC = 30352, sync = True, waitForSettling = False)
17-03-18 03:59:19.674 -07 000000480 INF: Z Motor: Moving to -0.138943 mm, started at -0.132523 mm, distance = -6.42 um
17-03-18 03:59:19.684 -07 000000618 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 03:59:19.684 -07 000000618 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 03:59:19.694 -07 000000590 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:59:19.694 -07 000000447 INF: FPGA: Recv YRDPOS 122697
17-03-18 03:59:19.704 -07 000000590 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-18 03:59:19.704 -07 000000590 INF: Y Motor: Encoder = 122697 = motor step 95857.0 = 59.9106 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:59:19.704 -07 000000590 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 03:59:19.704 -07 000000590 INF: Y Motor: Moving 1331 steps2
17-03-18 03:59:19.704 -07 000000480 INF: FPGA: Xmit ZDACW 30352\n [Z Motor]
17-03-18 03:59:19.704 -07 000000512 INF: FPGA: Recv ZDACW
17-03-18 03:59:19.714 -07 000000480 INF: FPGA: 'ZDACW 30352' command took 1 ms to send, 0 ms to get response, and 33 ms overall
17-03-18 03:59:19.714 -07 000000480 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:59:19.714 -07 000000424 INF: FPGA: Recv ZDACR 30352
17-03-18 03:59:19.724 -07 000000480 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:19.724 -07 000000480 INF: Z Motor: MoveAbsStepped took 43 ms (did NOT wait for settling yet))
17-03-18 03:59:19.724 -07 000000590 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 03:59:19.874 -07 000000479 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 404 ms.
17-03-18 03:59:19.874 -07 000000479 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-18 03:59:19.874 -07 000000479 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:59:19.874 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) end. Duration was 403 ms.
17-03-18 03:59:19.874 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-18 03:59:19.874 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:59:19.884 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:59:19.884 -07 000000447 INF: FPGA: Recv FOCMRRFOC
17-03-18 03:59:19.884 -07 000000618 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 203 ms overall
17-03-18 03:59:19.884 -07 000000479 INF: Camera: CopyActivePixFullImage end. Duration was 9 ms.
17-03-18 03:59:19.884 -07 000000479 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 415 ms.
17-03-18 03:59:19.894 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 416 ms.
17-03-18 03:59:20.094 -07 000000579 INF: FPGA: Recv YMVTILE
17-03-18 03:59:20.094 -07 000000590 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 03:59:20.134 -07 000000590 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:59:20.144 -07 000000618 INF: FPGA: Recv YRDPOS 124381
17-03-18 03:59:20.144 -07 000000590 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 03:59:20.144 -07 000000590 INF: Y Motor: Encoder = 124381 = motor step 97172.7 = 60.7329 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:59:20.144 -07 000000590 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-18 03:59:20.144 -07 000000590 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.832 mm, average velocity = 2.090 mm/sec
17-03-18 03:59:21.094 -07 000000590 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:59:21.094 -07 000000585 INF: FPGA: Recv YRDPOS 124382
17-03-18 03:59:21.104 -07 000000590 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:21.104 -07 000000590 INF: Y Motor: Encoder = 124382 = motor step 97173.4 = 60.7334 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:59:21.134 -07 000000590 INF: Y Motor: After move to 60.742607, error = -0.009209, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 03:59:21.134 -07 000000590 INF: Y Motor: Position error after settling (table move) = -19 encoder counts (-0.009 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 03:59:21.134 -07 000000590 INF: Y Motor: Moved to 60.7334 after 1454 ms (table move)
17-03-18 03:59:21.134 -07 000000608 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138943 mm (DAC = 30352)
17-03-18 03:59:21.134 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:21.134 -07 000000480 INF: FPGA: Recv ZSGSRD 30926
17-03-18 03:59:21.144 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 03:59:21.144 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:21.144 -07 000000590 INF: FPGA: Recv ZSGSRD 30918
17-03-18 03:59:21.154 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:21.154 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:21.154 -07 000000480 INF: FPGA: Recv ZSGSRD 30925
17-03-18 03:59:21.164 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:21.164 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:21.164 -07 000000590 INF: FPGA: Recv ZSGSRD 30915
17-03-18 03:59:21.174 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:21.174 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:21.174 -07 000000585 INF: FPGA: Recv ZSGSRD 30919
17-03-18 03:59:21.184 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:21.184 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:21.184 -07 000000512 INF: FPGA: Recv ZSGSRD 30922
17-03-18 03:59:21.194 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:21.194 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:21.194 -07 000000424 INF: FPGA: Recv ZSGSRD 30914
17-03-18 03:59:21.204 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:21.204 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:21.204 -07 000000585 INF: FPGA: Recv ZSGSRD 30915
17-03-18 03:59:21.214 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:21.214 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:21.214 -07 000000618 INF: FPGA: Recv ZSGSRD 30918
17-03-18 03:59:21.224 -07 000000608 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:21.224 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:21.224 -07 000000561 INF: FPGA: Recv ZSGSRD 30926
17-03-18 03:59:21.234 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:21.234 -07 000000608 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:59:21.234 -07 000000424 INF: FPGA: Recv ZPIEZORD 26634
17-03-18 03:59:21.244 -07 000000608 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:21.244 -07 000000608 INF: Z Motor: Piezo is near 36.9 V (nominally 0 to 100 V), expect near 46.3 V, since DAC is at 4.631 V. Piezo Error = -9.4 V.
17-03-18 03:59:21.244 -07 000000608 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.9 um, Read 10 ADC samples: Avg = 30920 (-138.2 uncal um), Error = 0.8 uncal um, Median = 30918 (-138.1 uncal um), StdDev = 5 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 30914 (-138.1 uncal um), Max = 30926 (-138.2 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 03:59:21.244 -07 000000608 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30920, posNoise = 6, negNoise = 6
17-03-18 03:59:21.244 -07 000000608 INF: Z Motor: After move to -0.138943, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:59:21.244 -07 000000608 INF: Z Motor: Settle wait time = 1457 ms, measure time = 107 ms (allowed 150 ms), total time = 1564 ms
17-03-18 03:59:21.244 -07 000000608 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-18 03:59:21.294 -07 000000608 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1616 ms
17-03-18 03:59:21.294 -07 000000608 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 03:59:21.294 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:59:21.294 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:59:21.294 -07 000000608 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:59:21.294 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:59:21.294 -07 000000590 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 03:59:21.294 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:59:21.294 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 03:59:21.294 -07 000000590 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 03:59:21.304 -07 000000590 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 03:59:21.304 -07 000000590 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 03:59:21.314 -07 000000590 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 9 ms.
17-03-18 03:59:21.314 -07 000000590 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 14 ms.
17-03-18 03:59:21.314 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 03:59:21.354 -07 000000424 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 03:59:21.624 -07 000000424 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 03:59:21.624 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 118. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1701, R2=1769, Total=3470. Warn if over 250 bubbles per interval.
17-03-18 03:59:21.654 -07 000000590 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 03:59:21.654 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 03:59:21.654 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 03:59:21.784 -07 000000467 INF: FPGA: Recv @CAMSNAP 380
17-03-18 03:59:21.784 -07 000000467 INF: FPGA: Recv CAMSNAP
17-03-18 03:59:21.784 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 461 ms to get response, and 467 ms overall
17-03-18 03:59:21.784 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1201016592, 0x0, 559484976) start.
17-03-18 03:59:21.914 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1201016592, 0x0, 559484976) end. Duration was 128 ms.
17-03-18 03:59:21.914 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:59:21.914 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 03:59:21.914 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 251 ms.
17-03-18 03:59:21.984 -07 000000590 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 03:59:21.984 -07 000000467 INF: Autofocus start
17-03-18 03:59:21.984 -07 000000467 INF: MeasureProfile start
17-03-18 03:59:21.984 -07 000000608 INF: FPGA: Recv FOCMRRCUR 
17-03-18 03:59:21.994 -07 000000590 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 03:59:21.994 -07 000000590 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 03:59:21.994 -07 000000467 INF: MeasureProfile done
17-03-18 03:59:21.994 -07 000000467 INF: X=0  Z correction [um]=-0.02394831
17-03-18 03:59:21.994 -07 000000467 INF: Autofocus finished
17-03-18 03:59:22.194 -07 000000467 INF: FPGA: Recv FOCMRRIMG
17-03-18 03:59:22.194 -07 000000590 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 03:59:22.194 -07 000000610 INF: ------------ Scan Snapping tile 2 at Y-position 60.7333984375, Z-position -0.138959991434384. ----------
17-03-18 03:59:22.204 -07 000000610 INF: Cycle	119	Tile	2	Exposure Settings		A	413	G	199	T	199	C	413
17-03-18 03:59:22.204 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28859, sync = True, waitForSettling = True)
17-03-18 03:59:22.204 -07 000000610 INF: Z Motor: Moving to -0.132108 mm, started at -0.138960 mm, distance = 6.85 um
17-03-18 03:59:22.204 -07 000000610 INF: FPGA: Xmit ZDACW 28859\n [Z Motor]
17-03-18 03:59:22.204 -07 000000467 INF: FPGA: Recv ZDACW
17-03-18 03:59:22.214 -07 000000610 INF: FPGA: 'ZDACW 28859' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 03:59:22.214 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:59:22.214 -07 000000608 INF: FPGA: Recv ZDACR 28859
17-03-18 03:59:22.224 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:22.224 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 03:59:22.374 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:22.374 -07 000000608 INF: FPGA: Recv ZSGSRD 29857
17-03-18 03:59:22.384 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:59:22.384 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:22.384 -07 000000608 INF: FPGA: Recv ZSGSRD 29856
17-03-18 03:59:22.394 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:22.394 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:22.394 -07 000000467 INF: FPGA: Recv ZSGSRD 29852
17-03-18 03:59:22.404 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:22.404 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:22.404 -07 000000608 INF: FPGA: Recv ZSGSRD 29851
17-03-18 03:59:22.414 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:22.414 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:22.414 -07 000000467 INF: FPGA: Recv ZSGSRD 29853
17-03-18 03:59:22.424 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:22.424 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:22.424 -07 000000608 INF: FPGA: Recv ZSGSRD 29853
17-03-18 03:59:22.434 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:22.434 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:22.434 -07 000000467 INF: FPGA: Recv ZSGSRD 29856
17-03-18 03:59:22.444 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:22.444 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:22.444 -07 000000590 INF: FPGA: Recv ZSGSRD 29853
17-03-18 03:59:22.454 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:22.454 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:22.454 -07 000000424 INF: FPGA: Recv ZSGSRD 29859
17-03-18 03:59:22.464 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:22.464 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:22.464 -07 000000424 INF: FPGA: Recv ZSGSRD 29855
17-03-18 03:59:22.474 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:22.474 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:59:22.474 -07 000000467 INF: FPGA: Recv ZPIEZORD 25251
17-03-18 03:59:22.484 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:22.484 -07 000000610 INF: Z Motor: Piezo is near 33.9 V (nominally 0 to 100 V), expect near 44.0 V, since DAC is at 4.404 V. Piezo Error = -10.1 V.
17-03-18 03:59:22.484 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.1 um, Read 10 ADC samples: Avg = 29854 (-131.3 uncal um), Error = 0.8 uncal um, Median = 29854 (-131.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 29851 (-131.3 uncal um), Max = 29859 (-131.4 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 03:59:22.484 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29854, posNoise = 5, negNoise = 3
17-03-18 03:59:22.484 -07 000000610 INF: Z Motor: After move to -0.132108, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:59:22.484 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 03:59:22.484 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:59:22.484 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:59:22.484 -07 000000467 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:59:22.484 -07 000000590 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:59:22.484 -07 000000608 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 03:59:22.484 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 03:59:22.484 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 03:59:22.484 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:59:22.484 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 03:59:22.484 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 03:59:22.484 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 03:59:22.484 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 03:59:22.494 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 03:59:22.494 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 03:59:22.494 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-18 03:59:22.494 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 03:59:22.504 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-18 03:59:22.504 -07 000000608 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 03:59:22.504 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 03:59:22.504 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 03:59:22.514 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 413 413 199 199 29036 150\n [Camera]
17-03-18 03:59:22.704 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 03:59:23.124 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 605
17-03-18 03:59:23.124 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 605
17-03-18 03:59:23.124 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:59:23.124 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 605
17-03-18 03:59:23.124 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 605
17-03-18 03:59:23.124 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:59:23.124 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:59:23.124 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-18 03:59:23.134 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:59:23.134 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) start.
17-03-18 03:59:23.314 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29036 798
17-03-18 03:59:23.464 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP turning grn on 949
17-03-18 03:59:23.524 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 396 ms.
17-03-18 03:59:23.524 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 03:59:23.524 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:59:23.524 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) end. Duration was 395 ms.
17-03-18 03:59:23.524 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 03:59:23.524 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:59:23.534 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 03:59:23.534 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-18 03:59:23.534 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:59:23.534 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-18 03:59:23.664 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1149
17-03-18 03:59:23.664 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1149
17-03-18 03:59:23.664 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:59:23.664 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1149
17-03-18 03:59:23.674 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1149
17-03-18 03:59:23.674 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:59:23.794 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:59:23.794 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start.
17-03-18 03:59:23.794 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:59:23.794 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 03:59:23.854 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP 1339
17-03-18 03:59:23.854 -07 000000608 INF: FPGA: Recv CAMDBLSNAP
17-03-18 03:59:23.854 -07 000000610 INF: FPGA: 'CAMDBLSNAP 413 413 199 199 29036 150' command took 2 ms to send, 1336 ms to get response, and 1347 ms overall
17-03-18 03:59:23.854 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 03:59:23.854 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 3 at Y-position 60.7333984375, Z-Position -0.132111781291267. ------
17-03-18 03:59:23.864 -07 000000590 INF: Y Motor: MoveYZ optimized starting. Moving Y to 61.5726 mm, moving Z to -0.13888 mm
17-03-18 03:59:23.864 -07 000000590 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 03:59:23.864 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 03:59:23.864 -07 000000502 INF: Y Motor: Entering MoveAbsStepped (target = 98516 steps, sync = True, waitForSettling = True)
17-03-18 03:59:23.864 -07 000000502 INF: Y Motor: Moving to 61.5726 mm, started at 60.7334 mm, delta = 0.8392 mm
17-03-18 03:59:23.864 -07 000000437 INF: FPGA: Recv FOCMRRCUR 
17-03-18 03:59:23.864 -07 000000608 INF: Z Motor: Entering MoveAbsStepped (DAC = 30338, sync = True, waitForSettling = False)
17-03-18 03:59:23.864 -07 000000608 INF: Z Motor: Moving to -0.138878 mm, started at -0.132112 mm, distance = -6.77 um
17-03-18 03:59:23.874 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 03:59:23.874 -07 000000608 INF: FPGA: Xmit ZDACW 30338\n [Z Motor]
17-03-18 03:59:23.874 -07 000000591 INF: FPGA: Recv ZDACW
17-03-18 03:59:23.884 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:59:23.884 -07 000000608 INF: FPGA: 'ZDACW 30338' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-18 03:59:23.884 -07 000000437 INF: FPGA: Recv YRDPOS 124382
17-03-18 03:59:23.894 -07 000000424 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 03:59:23.894 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-18 03:59:23.894 -07 000000502 INF: Y Motor: Encoder = 124382 = motor step 97173.4 = 60.7334 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:59:23.894 -07 000000502 INF: Y Motor: Last commanded position = 60.7426 mm (97188.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 03:59:23.894 -07 000000502 INF: Y Motor: Moving 1343 steps-20
17-03-18 03:59:23.904 -07 000000608 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:59:23.904 -07 000000512 INF: FPGA: Recv ZDACR 30338
17-03-18 03:59:23.914 -07 000000608 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 03:59:23.914 -07 000000502 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 03:59:23.914 -07 000000608 INF: Z Motor: MoveAbsStepped took 43 ms (did NOT wait for settling yet))
17-03-18 03:59:24.094 -07 000000437 INF: FPGA: Recv FOCMRRFOC
17-03-18 03:59:24.094 -07 000000424 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 03:59:24.114 -07 000000437 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 119, FrontChillerTemperature: 4.004458,
17-03-18 03:59:24.194 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 397 ms.
17-03-18 03:59:24.194 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 03:59:24.194 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:59:24.194 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 399 ms.
17-03-18 03:59:24.194 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 03:59:24.194 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:59:24.194 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 03:59:24.194 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 526 ms.
17-03-18 03:59:24.194 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 03:59:24.204 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 531 ms.
17-03-18 03:59:24.284 -07 000000608 INF: FPGA: Recv YMVTILE
17-03-18 03:59:24.284 -07 000000502 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 395 ms overall
17-03-18 03:59:24.334 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:59:24.344 -07 000000437 INF: FPGA: Recv YRDPOS 126083
17-03-18 03:59:24.344 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 03:59:24.344 -07 000000502 INF: Y Motor: Encoder = 126083 = motor step 98502.3 = 61.5640 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:59:24.344 -07 000000502 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-18 03:59:24.344 -07 000000502 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 395 ms, distance = 0.839 mm, average velocity = 2.125 mm/sec
17-03-18 03:59:25.294 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:59:25.294 -07 000000424 INF: FPGA: Recv YRDPOS 126083
17-03-18 03:59:25.304 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:59:25.304 -07 000000502 INF: Y Motor: Encoder = 126083 = motor step 98502.3 = 61.5640 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:59:25.334 -07 000000502 INF: Y Motor: After move to 61.572609, error = -0.008644, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 03:59:25.334 -07 000000502 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 03:59:25.334 -07 000000502 INF: Y Motor: Moved to 61.5640 after 1466 ms (table move)
17-03-18 03:59:25.334 -07 000000590 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138878 mm (DAC = 30338)
17-03-18 03:59:25.334 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:25.334 -07 000000012 INF: FPGA: Recv ZSGSRD 30914
17-03-18 03:59:25.344 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 03:59:25.344 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:25.344 -07 000000502 INF: FPGA: Recv ZSGSRD 30906
17-03-18 03:59:25.354 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:25.354 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:25.354 -07 000000012 INF: FPGA: Recv ZSGSRD 30910
17-03-18 03:59:25.364 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:25.364 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:25.364 -07 000000462 INF: FPGA: Recv ZSGSRD 30907
17-03-18 03:59:25.374 -07 000000590 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:25.374 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:25.374 -07 000000625 INF: FPGA: Recv ZSGSRD 30912
17-03-18 03:59:25.384 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:25.384 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:25.384 -07 000000512 INF: FPGA: Recv ZSGSRD 30907
17-03-18 03:59:25.394 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:25.394 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:25.394 -07 000000462 INF: FPGA: Recv ZSGSRD 30900
17-03-18 03:59:25.404 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:25.404 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:25.404 -07 000000625 INF: FPGA: Recv ZSGSRD 30906
17-03-18 03:59:25.414 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:25.414 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:25.414 -07 000000512 INF: FPGA: Recv ZSGSRD 30903
17-03-18 03:59:25.424 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:25.424 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:25.424 -07 000000462 INF: FPGA: Recv ZSGSRD 30909
17-03-18 03:59:25.434 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:25.434 -07 000000590 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:59:25.434 -07 000000591 INF: FPGA: Recv ZPIEZORD 26679
17-03-18 03:59:25.444 -07 000000590 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:25.444 -07 000000590 INF: Z Motor: Piezo is near 37.0 V (nominally 0 to 100 V), expect near 46.3 V, since DAC is at 4.629 V. Piezo Error = -9.3 V.
17-03-18 03:59:25.444 -07 000000590 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.9 um, Read 10 ADC samples: Avg = 30907 (-138.1 uncal um), Error = 0.8 uncal um, Median = 30907 (-138.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 30900 (-138.0 uncal um), Max = 30914 (-138.1 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 03:59:25.444 -07 000000590 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30907, posNoise = 7, negNoise = 7
17-03-18 03:59:25.444 -07 000000590 INF: Z Motor: After move to -0.138878, error = 0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:59:25.444 -07 000000590 INF: Z Motor: Settle wait time = 1467 ms, measure time = 106 ms (allowed 150 ms), total time = 1573 ms
17-03-18 03:59:25.444 -07 000000590 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-18 03:59:25.494 -07 000000590 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1627 ms
17-03-18 03:59:25.494 -07 000000590 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 03:59:25.494 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:59:25.494 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:59:25.494 -07 000000585 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:59:25.494 -07 000000608 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:59:25.494 -07 000000467 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 03:59:25.494 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:59:25.494 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 03:59:25.494 -07 000000467 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 03:59:25.504 -07 000000467 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms.
17-03-18 03:59:25.504 -07 000000467 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 03:59:25.504 -07 000000467 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 03:59:25.514 -07 000000467 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 13 ms.
17-03-18 03:59:25.514 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 03:59:25.554 -07 000000502 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 03:59:25.854 -07 000000502 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 03:59:25.854 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 03:59:25.854 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 03:59:25.854 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2298580584, 0x0, 559484976) start.
17-03-18 03:59:25.894 -07 000000625 INF: FPGA: Recv @CAMSNAP 380
17-03-18 03:59:25.894 -07 000000502 INF: FPGA: Recv CAMSNAP
17-03-18 03:59:25.894 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 379 ms to get response, and 387 ms overall
17-03-18 03:59:25.974 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2298580584, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 03:59:25.974 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:59:25.974 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 03:59:25.974 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 03:59:26.004 -07 000000502 INF: Autofocus start
17-03-18 03:59:26.004 -07 000000502 INF: MeasureProfile start
17-03-18 03:59:26.004 -07 000000447 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 03:59:26.004 -07 000000625 INF: FPGA: Recv FOCMRRCUR 
17-03-18 03:59:26.014 -07 000000447 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 03:59:26.014 -07 000000447 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 03:59:26.024 -07 000000502 INF: MeasureProfile done
17-03-18 03:59:26.024 -07 000000502 INF: X=0  Z correction [um]=-0.02394831
17-03-18 03:59:26.024 -07 000000502 INF: Autofocus finished
17-03-18 03:59:26.214 -07 000000625 INF: FPGA: Recv FOCMRRIMG
17-03-18 03:59:26.214 -07 000000447 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 03:59:26.214 -07 000000610 INF: ------------ Scan Snapping tile 3 at Y-position 61.56396484375, Z-position -0.138876476676541. ----------
17-03-18 03:59:26.214 -07 000000610 INF: Cycle	119	Tile	3	Exposure Settings		A	413	G	199	T	199	C	413
17-03-18 03:59:26.224 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28846, sync = True, waitForSettling = True)
17-03-18 03:59:26.224 -07 000000610 INF: Z Motor: Moving to -0.132049 mm, started at -0.138876 mm, distance = 6.83 um
17-03-18 03:59:26.224 -07 000000610 INF: FPGA: Xmit ZDACW 28846\n [Z Motor]
17-03-18 03:59:26.224 -07 000000591 INF: FPGA: Recv ZDACW
17-03-18 03:59:26.234 -07 000000610 INF: FPGA: 'ZDACW 28846' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 03:59:26.234 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:59:26.234 -07 000000502 INF: FPGA: Recv ZDACR 28846
17-03-18 03:59:26.244 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:26.244 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 03:59:26.394 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:26.394 -07 000000502 INF: FPGA: Recv ZSGSRD 29846
17-03-18 03:59:26.404 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:59:26.404 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:26.404 -07 000000447 INF: FPGA: Recv ZSGSRD 29842
17-03-18 03:59:26.414 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:26.414 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:26.414 -07 000000447 INF: FPGA: Recv ZSGSRD 29844
17-03-18 03:59:26.424 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:26.424 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:26.424 -07 000000502 INF: FPGA: Recv ZSGSRD 29848
17-03-18 03:59:26.434 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:26.434 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:26.434 -07 000000591 INF: FPGA: Recv ZSGSRD 29844
17-03-18 03:59:26.444 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:26.444 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:26.444 -07 000000502 INF: FPGA: Recv ZSGSRD 29845
17-03-18 03:59:26.454 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:26.454 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:26.454 -07 000000502 INF: FPGA: Recv ZSGSRD 29848
17-03-18 03:59:26.464 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:26.464 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:26.464 -07 000000625 INF: FPGA: Recv ZSGSRD 29844
17-03-18 03:59:26.474 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:26.474 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:26.474 -07 000000502 INF: FPGA: Recv ZSGSRD 29848
17-03-18 03:59:26.484 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:26.484 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:26.484 -07 000000625 INF: FPGA: Recv ZSGSRD 29850
17-03-18 03:59:26.494 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:26.494 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:59:26.494 -07 000000502 INF: FPGA: Recv ZPIEZORD 25276
17-03-18 03:59:26.504 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:26.504 -07 000000610 INF: Z Motor: Piezo is near 34.0 V (nominally 0 to 100 V), expect near 44.0 V, since DAC is at 4.402 V. Piezo Error = -10.0 V.
17-03-18 03:59:26.504 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.0 um, Read 10 ADC samples: Avg = 29846 (-131.3 uncal um), Error = 0.8 uncal um, Median = 29846 (-131.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 29842 (-131.3 uncal um), Max = 29850 (-131.3 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 03:59:26.504 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29846, posNoise = 4, negNoise = 4
17-03-18 03:59:26.504 -07 000000610 INF: Z Motor: After move to -0.132049, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:59:26.504 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 03:59:26.504 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:59:26.504 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:59:26.504 -07 000000591 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:59:26.504 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:59:26.504 -07 000000625 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 03:59:26.504 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 03:59:26.504 -07 000000447 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 03:59:26.504 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:59:26.504 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-18 03:59:26.504 -07 000000625 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 03:59:26.504 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 03:59:26.504 -07 000000447 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 03:59:26.514 -07 000000625 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 03:59:26.514 -07 000000625 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 03:59:26.514 -07 000000447 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 03:59:26.514 -07 000000447 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 03:59:26.524 -07 000000625 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 03:59:26.524 -07 000000625 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 03:59:26.524 -07 000000447 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 03:59:26.524 -07 000000447 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 17 ms.
17-03-18 03:59:26.524 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 413 413 199 199 29022 150\n [Camera]
17-03-18 03:59:26.624 -07 000000447 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 03:59:26.624 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 118. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1701, R2=1769, Total=3470. Warn if over 250 bubbles per interval.
17-03-18 03:59:26.724 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 03:59:27.134 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 605
17-03-18 03:59:27.134 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 605
17-03-18 03:59:27.134 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:59:27.144 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 605
17-03-18 03:59:27.144 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 605
17-03-18 03:59:27.144 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:59:27.144 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:59:27.144 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 03:59:27.144 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:59:27.144 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 2317661968, 0x0, 391868352) start.
17-03-18 03:59:27.334 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29022 798
17-03-18 03:59:27.474 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning grn on 948
17-03-18 03:59:27.534 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 2317661968, 0x0, 391868352) end. Duration was 393 ms.
17-03-18 03:59:27.534 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-18 03:59:27.534 -07 000000625 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:59:27.534 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 396 ms.
17-03-18 03:59:27.534 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 03:59:27.534 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:59:27.544 -07 000000625 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:59:27.544 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 03:59:27.544 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:59:27.544 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 407 ms.
17-03-18 03:59:27.674 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1147
17-03-18 03:59:27.674 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1147
17-03-18 03:59:27.684 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:59:27.684 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:59:27.684 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) start.
17-03-18 03:59:27.684 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1147
17-03-18 03:59:27.684 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1147
17-03-18 03:59:27.684 -07 000000625 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:59:27.684 -07 000000625 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:59:27.684 -07 000000625 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 03:59:27.874 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP 1340
17-03-18 03:59:27.874 -07 000000447 INF: FPGA: Recv CAMDBLSNAP
17-03-18 03:59:27.874 -07 000000610 INF: FPGA: 'CAMDBLSNAP 413 413 199 199 29022 150' command took 2 ms to send, 1341 ms to get response, and 1347 ms overall
17-03-18 03:59:27.874 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 03:59:27.874 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 4 at Y-position 61.56396484375, Z-Position -0.132060387594133. ------
17-03-18 03:59:27.874 -07 000000480 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 03:59:27.874 -07 000000579 INF: Y Motor: MoveYZ optimized starting. Moving Y to 62.4026 mm, moving Z to -0.13842 mm
17-03-18 03:59:27.874 -07 000000579 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 03:59:27.884 -07 000000591 INF: Y Motor: Entering MoveAbsStepped (target = 99844 steps, sync = True, waitForSettling = True)
17-03-18 03:59:27.884 -07 000000591 INF: Y Motor: Moving to 62.4026 mm, started at 61.5640 mm, delta = 0.8386 mm
17-03-18 03:59:27.884 -07 000000591 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:59:27.884 -07 000000462 INF: FPGA: Recv FOCMRRCUR 
17-03-18 03:59:27.884 -07 000000480 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 03:59:27.884 -07 000000447 INF: Z Motor: Entering MoveAbsStepped (DAC = 30238, sync = True, waitForSettling = False)
17-03-18 03:59:27.884 -07 000000447 INF: Z Motor: Moving to -0.138421 mm, started at -0.132060 mm, distance = -6.36 um
17-03-18 03:59:27.884 -07 000000561 INF: FPGA: Recv YRDPOS 126083
17-03-18 03:59:27.894 -07 000000591 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:27.894 -07 000000591 INF: Y Motor: Encoder = 126083 = motor step 98502.3 = 61.5640 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:59:27.894 -07 000000447 INF: FPGA: Xmit ZDACW 30238\n [Z Motor]
17-03-18 03:59:27.894 -07 000000591 INF: Y Motor: Last commanded position = 61.5726 mm (98516.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 03:59:27.894 -07 000000591 INF: Y Motor: Moving 1342 steps-18
17-03-18 03:59:27.894 -07 000000479 INF: FPGA: Recv ZDACW
17-03-18 03:59:27.904 -07 000000447 INF: FPGA: 'ZDACW 30238' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-18 03:59:27.904 -07 000000480 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 03:59:27.914 -07 000000591 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 03:59:27.924 -07 000000447 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:59:27.924 -07 000000618 INF: FPGA: Recv ZDACR 30238
17-03-18 03:59:27.934 -07 000000447 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 03:59:27.934 -07 000000447 INF: Z Motor: MoveAbsStepped took 48 ms (did NOT wait for settling yet))
17-03-18 03:59:28.084 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) end. Duration was 402 ms.
17-03-18 03:59:28.084 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 03:59:28.084 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:59:28.084 -07 000000625 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 402 ms.
17-03-18 03:59:28.084 -07 000000625 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-18 03:59:28.084 -07 000000625 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:59:28.094 -07 000000625 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:59:28.094 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 03:59:28.094 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-18 03:59:28.094 -07 000000625 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-18 03:59:28.104 -07 000000618 INF: FPGA: Recv FOCMRRFOC
17-03-18 03:59:28.104 -07 000000480 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 221 ms overall
17-03-18 03:59:28.284 -07 000000561 INF: FPGA: Recv YMVTILE
17-03-18 03:59:28.284 -07 000000591 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 03:59:28.334 -07 000000591 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:59:28.344 -07 000000590 INF: FPGA: Recv YRDPOS 127786
17-03-18 03:59:28.344 -07 000000591 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 03:59:28.344 -07 000000591 INF: Y Motor: Encoder = 127786 = motor step 99832.8 = 62.3955 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:59:28.344 -07 000000591 INF: Y Motor: Position error before settling (table move) = -15 encoder counts (-0.007 mm)
17-03-18 03:59:28.344 -07 000000591 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.839 mm, average velocity = 2.112 mm/sec
17-03-18 03:59:29.294 -07 000000591 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:59:29.294 -07 000000502 INF: FPGA: Recv YRDPOS 127786
17-03-18 03:59:29.304 -07 000000591 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:59:29.304 -07 000000591 INF: Y Motor: Encoder = 127786 = motor step 99832.8 = 62.3955 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:59:29.324 -07 000000591 INF: Y Motor: After move to 62.402607, error = -0.007099, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 03:59:29.324 -07 000000591 INF: Y Motor: Position error after settling (table move) = -15 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 03:59:29.324 -07 000000591 INF: Y Motor: Moved to 62.3955 after 1449 ms (table move)
17-03-18 03:59:29.334 -07 000000579 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138421 mm (DAC = 30238)
17-03-18 03:59:29.334 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:29.334 -07 000000618 INF: FPGA: Recv ZSGSRD 30838
17-03-18 03:59:29.344 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 03:59:29.344 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:29.344 -07 000000591 INF: FPGA: Recv ZSGSRD 30833
17-03-18 03:59:29.354 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:29.354 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:29.354 -07 000000502 INF: FPGA: Recv ZSGSRD 30837
17-03-18 03:59:29.364 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:29.364 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:29.364 -07 000000618 INF: FPGA: Recv ZSGSRD 30829
17-03-18 03:59:29.374 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:29.374 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:29.374 -07 000000625 INF: FPGA: Recv ZSGSRD 30832
17-03-18 03:59:29.384 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:29.384 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:29.384 -07 000000618 INF: FPGA: Recv ZSGSRD 30832
17-03-18 03:59:29.394 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:29.394 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:29.394 -07 000000447 INF: FPGA: Recv ZSGSRD 30834
17-03-18 03:59:29.404 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:29.404 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:29.404 -07 000000618 INF: FPGA: Recv ZSGSRD 30834
17-03-18 03:59:29.414 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:29.414 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:29.414 -07 000000447 INF: FPGA: Recv ZSGSRD 30844
17-03-18 03:59:29.424 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:29.424 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:29.424 -07 000000479 INF: FPGA: Recv ZSGSRD 30834
17-03-18 03:59:29.434 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:29.434 -07 000000579 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:59:29.434 -07 000000012 INF: FPGA: Recv ZPIEZORD 26613
17-03-18 03:59:29.444 -07 000000579 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:29.444 -07 000000579 INF: Z Motor: Piezo is near 36.9 V (nominally 0 to 100 V), expect near 46.1 V, since DAC is at 4.614 V. Piezo Error = -9.3 V.
17-03-18 03:59:29.444 -07 000000579 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.4 um, Read 10 ADC samples: Avg = 30835 (-137.6 uncal um), Error = 0.8 uncal um, Median = 30834 (-137.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 30829 (-137.6 uncal um), Max = 30844 (-137.7 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 03:59:29.444 -07 000000579 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30835, posNoise = 9, negNoise = 6
17-03-18 03:59:29.444 -07 000000579 INF: Z Motor: After move to -0.138421, error = 0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:59:29.444 -07 000000579 INF: Z Motor: Settle wait time = 1451 ms, measure time = 108 ms (allowed 150 ms), total time = 1559 ms
17-03-18 03:59:29.444 -07 000000579 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-18 03:59:29.474 -07 000000561 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 119, FrontChillerTemperature: 3.997626,
17-03-18 03:59:29.494 -07 000000579 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1612 ms
17-03-18 03:59:29.494 -07 000000579 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 03:59:29.494 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:59:29.494 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:59:29.494 -07 000000625 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:59:29.494 -07 000000608 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:59:29.494 -07 000000447 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 03:59:29.494 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:59:29.494 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 03:59:29.494 -07 000000447 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 03:59:29.504 -07 000000447 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 03:59:29.504 -07 000000447 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 03:59:29.504 -07 000000447 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 03:59:29.504 -07 000000447 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 03:59:29.514 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 03:59:29.554 -07 000000462 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 03:59:29.854 -07 000000467 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 03:59:29.854 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 03:59:29.854 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 03:59:29.854 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2353084232, 0x0, 559484976) start.
17-03-18 03:59:29.894 -07 000000561 INF: FPGA: Recv @CAMSNAP 380
17-03-18 03:59:29.894 -07 000000608 INF: FPGA: Recv CAMSNAP
17-03-18 03:59:29.894 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 375 ms to get response, and 384 ms overall
17-03-18 03:59:29.974 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2353084232, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 03:59:29.974 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:59:29.974 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 03:59:29.974 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 03:59:29.994 -07 000000462 INF: Autofocus start
17-03-18 03:59:29.994 -07 000000462 INF: MeasureProfile start
17-03-18 03:59:29.994 -07 000000467 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 03:59:30.004 -07 000000447 INF: FPGA: Recv FOCMRRCUR 
17-03-18 03:59:30.004 -07 000000467 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 6 ms overall
17-03-18 03:59:30.004 -07 000000467 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 03:59:30.004 -07 000000462 INF: MeasureProfile done
17-03-18 03:59:30.004 -07 000000462 INF: X=0  Z correction [um]=-0.02394831
17-03-18 03:59:30.004 -07 000000462 INF: Autofocus finished
17-03-18 03:59:30.204 -07 000000012 INF: FPGA: Recv FOCMRRIMG
17-03-18 03:59:30.204 -07 000000467 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 195 ms to get response, and 202 ms overall
17-03-18 03:59:30.204 -07 000000610 INF: ------------ Scan Snapping tile 4 at Y-position 62.3955078125, Z-position -0.138413933402334. ----------
17-03-18 03:59:30.214 -07 000000610 INF: Cycle	119	Tile	4	Exposure Settings		A	413	G	199	T	199	C	413
17-03-18 03:59:30.214 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28745, sync = True, waitForSettling = True)
17-03-18 03:59:30.214 -07 000000610 INF: Z Motor: Moving to -0.131586 mm, started at -0.138414 mm, distance = 6.83 um
17-03-18 03:59:30.214 -07 000000610 INF: FPGA: Xmit ZDACW 28745\n [Z Motor]
17-03-18 03:59:30.214 -07 000000467 INF: FPGA: Recv ZDACW
17-03-18 03:59:30.224 -07 000000610 INF: FPGA: 'ZDACW 28745' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 03:59:30.224 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:59:30.224 -07 000000467 INF: FPGA: Recv ZDACR 28745
17-03-18 03:59:30.234 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:30.234 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 03:59:30.384 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:30.384 -07 000000012 INF: FPGA: Recv ZSGSRD 29778
17-03-18 03:59:30.394 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:30.394 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:30.394 -07 000000467 INF: FPGA: Recv ZSGSRD 29770
17-03-18 03:59:30.404 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:30.404 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:30.404 -07 000000561 INF: FPGA: Recv ZSGSRD 29772
17-03-18 03:59:30.414 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:30.414 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:30.414 -07 000000561 INF: FPGA: Recv ZSGSRD 29776
17-03-18 03:59:30.424 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:30.424 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:30.424 -07 000000561 INF: FPGA: Recv ZSGSRD 29774
17-03-18 03:59:30.434 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:30.434 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:30.434 -07 000000012 INF: FPGA: Recv ZSGSRD 29780
17-03-18 03:59:30.444 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:30.444 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:30.444 -07 000000561 INF: FPGA: Recv ZSGSRD 29768
17-03-18 03:59:30.454 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:30.454 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:30.454 -07 000000467 INF: FPGA: Recv ZSGSRD 29777
17-03-18 03:59:30.464 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:30.464 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:30.464 -07 000000012 INF: FPGA: Recv ZSGSRD 29772
17-03-18 03:59:30.474 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:30.474 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:30.474 -07 000000561 INF: FPGA: Recv ZSGSRD 29768
17-03-18 03:59:30.484 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:30.484 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:59:30.484 -07 000000012 INF: FPGA: Recv ZPIEZORD 25219
17-03-18 03:59:30.494 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:30.494 -07 000000610 INF: Z Motor: Piezo is near 33.9 V (nominally 0 to 100 V), expect near 43.9 V, since DAC is at 4.386 V. Piezo Error = -10.0 V.
17-03-18 03:59:30.494 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.6 um, Read 10 ADC samples: Avg = 29774 (-130.8 uncal um), Error = 0.8 uncal um, Median = 29773 (-130.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29768 (-130.8 uncal um), Max = 29780 (-130.9 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 03:59:30.494 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29774, posNoise = 6, negNoise = 6
17-03-18 03:59:30.494 -07 000000610 INF: Z Motor: After move to -0.131586, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:59:30.494 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-18 03:59:30.494 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:59:30.494 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:59:30.494 -07 000000467 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:59:30.494 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:59:30.494 -07 000000012 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 03:59:30.494 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:59:30.494 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 03:59:30.494 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 03:59:30.494 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 03:59:30.494 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 03:59:30.504 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 03:59:30.504 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 03:59:30.504 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-18 03:59:30.504 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 03:59:30.504 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 03:59:30.504 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 03:59:30.514 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 03:59:30.514 -07 000000012 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 03:59:30.514 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 03:59:30.514 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 03:59:30.524 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 413 413 199 199 28922 150\n [Camera]
17-03-18 03:59:30.724 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 03:59:31.134 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 605
17-03-18 03:59:31.134 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 605
17-03-18 03:59:31.134 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:59:31.134 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:59:31.134 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-18 03:59:31.134 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 605
17-03-18 03:59:31.134 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 605
17-03-18 03:59:31.134 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:59:31.134 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:59:31.134 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-18 03:59:31.324 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28922 798
17-03-18 03:59:31.474 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP turning grn on 948
17-03-18 03:59:31.514 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 376 ms.
17-03-18 03:59:31.514 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-18 03:59:31.514 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:59:31.514 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:59:31.524 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 386 ms.
17-03-18 03:59:31.524 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-18 03:59:31.524 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:59:31.524 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-18 03:59:31.524 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:59:31.524 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-18 03:59:31.624 -07 000000561 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 03:59:31.624 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 118. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1701, R2=1769, Total=3470. Warn if over 250 bubbles per interval.
17-03-18 03:59:31.674 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1147
17-03-18 03:59:31.674 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1147
17-03-18 03:59:31.674 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:59:31.674 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:59:31.674 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-18 03:59:31.674 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1147
17-03-18 03:59:31.674 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1147
17-03-18 03:59:31.684 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:59:31.684 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:59:31.684 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-18 03:59:31.864 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP 1340
17-03-18 03:59:31.864 -07 000000585 INF: FPGA: Recv CAMDBLSNAP
17-03-18 03:59:31.864 -07 000000610 INF: FPGA: 'CAMDBLSNAP 413 413 199 199 28922 150' command took 2 ms to send, 1338 ms to get response, and 1347 ms overall
17-03-18 03:59:31.874 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 03:59:31.874 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 5 at Y-position 62.3955078125, Z-Position -0.131597844319926. ------
17-03-18 03:59:31.874 -07 000000012 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 03:59:31.874 -07 000000424 INF: Y Motor: MoveYZ optimized starting. Moving Y to 63.2326 mm, moving Z to -0.13835 mm
17-03-18 03:59:31.874 -07 000000424 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 03:59:31.874 -07 000000585 INF: Y Motor: Entering MoveAbsStepped (target = 101172 steps, sync = True, waitForSettling = True)
17-03-18 03:59:31.874 -07 000000585 INF: Y Motor: Moving to 63.2326 mm, started at 62.3955 mm, delta = 0.8371 mm
17-03-18 03:59:31.874 -07 000000437 INF: FPGA: Recv FOCMRRCUR 
17-03-18 03:59:31.884 -07 000000012 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 03:59:31.884 -07 000000585 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:59:31.884 -07 000000447 INF: Z Motor: Entering MoveAbsStepped (DAC = 30222, sync = True, waitForSettling = False)
17-03-18 03:59:31.884 -07 000000447 INF: Z Motor: Moving to -0.138347 mm, started at -0.131598 mm, distance = -6.75 um
17-03-18 03:59:31.884 -07 000000437 INF: FPGA: Recv YRDPOS 127787
17-03-18 03:59:31.894 -07 000000585 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-18 03:59:31.894 -07 000000012 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 03:59:31.894 -07 000000585 INF: Y Motor: Encoder = 127787 = motor step 99833.6 = 62.3960 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:59:31.894 -07 000000585 INF: Y Motor: Last commanded position = 62.4026 mm (99844.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 03:59:31.894 -07 000000585 INF: Y Motor: Moving 1339 steps-15
17-03-18 03:59:31.904 -07 000000447 INF: FPGA: Xmit ZDACW 30222\n [Z Motor]
17-03-18 03:59:31.904 -07 000000437 INF: FPGA: Recv ZDACW
17-03-18 03:59:31.914 -07 000000585 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 03:59:31.914 -07 000000447 INF: FPGA: 'ZDACW 30222' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 03:59:31.924 -07 000000447 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:59:31.924 -07 000000480 INF: FPGA: Recv ZDACR 30222
17-03-18 03:59:31.934 -07 000000447 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 03:59:31.934 -07 000000447 INF: Z Motor: MoveAbsStepped took 49 ms (did NOT wait for settling yet))
17-03-18 03:59:32.074 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 401 ms.
17-03-18 03:59:32.074 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 03:59:32.074 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:59:32.074 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 399 ms.
17-03-18 03:59:32.074 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 03:59:32.084 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:59:32.084 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:59:32.084 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 03:59:32.084 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms.
17-03-18 03:59:32.094 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-18 03:59:32.094 -07 000000437 INF: FPGA: Recv FOCMRRFOC
17-03-18 03:59:32.094 -07 000000012 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 212 ms overall
17-03-18 03:59:32.284 -07 000000479 INF: FPGA: Recv YMVTILE
17-03-18 03:59:32.284 -07 000000585 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 393 ms overall
17-03-18 03:59:32.334 -07 000000585 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:59:32.334 -07 000000618 INF: FPGA: Recv YRDPOS 129482
17-03-18 03:59:32.344 -07 000000585 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 03:59:32.344 -07 000000585 INF: Y Motor: Encoder = 129482 = motor step 101157.8 = 63.2236 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:59:32.344 -07 000000585 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-18 03:59:32.344 -07 000000585 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.837 mm, average velocity = 2.125 mm/sec
17-03-18 03:59:33.294 -07 000000585 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:59:33.294 -07 000000479 INF: FPGA: Recv YRDPOS 129483
17-03-18 03:59:33.304 -07 000000585 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:59:33.304 -07 000000585 INF: Y Motor: Encoder = 129483 = motor step 101158.6 = 63.2241 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:59:33.334 -07 000000585 INF: Y Motor: After move to 63.232609, error = -0.008488, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 03:59:33.334 -07 000000585 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 03:59:33.334 -07 000000585 INF: Y Motor: Moved to 63.2241 after 1452 ms (table move)
17-03-18 03:59:33.334 -07 000000424 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138347 mm (DAC = 30222)
17-03-18 03:59:33.334 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:33.334 -07 000000437 INF: FPGA: Recv ZSGSRD 30827
17-03-18 03:59:33.344 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 03:59:33.344 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:33.344 -07 000000608 INF: FPGA: Recv ZSGSRD 30828
17-03-18 03:59:33.354 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:33.354 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:33.354 -07 000000579 INF: FPGA: Recv ZSGSRD 30825
17-03-18 03:59:33.364 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:33.364 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:33.364 -07 000000012 INF: FPGA: Recv ZSGSRD 30832
17-03-18 03:59:33.374 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:33.374 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:33.374 -07 000000467 INF: FPGA: Recv ZSGSRD 30833
17-03-18 03:59:33.384 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:33.384 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:33.384 -07 000000479 INF: FPGA: Recv ZSGSRD 30829
17-03-18 03:59:33.394 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:33.394 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:33.394 -07 000000447 INF: FPGA: Recv ZSGSRD 30822
17-03-18 03:59:33.404 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:33.404 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:33.404 -07 000000512 INF: FPGA: Recv ZSGSRD 30818
17-03-18 03:59:33.414 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:33.414 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:33.414 -07 000000579 INF: FPGA: Recv ZSGSRD 30826
17-03-18 03:59:33.424 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:33.424 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:33.424 -07 000000437 INF: FPGA: Recv ZSGSRD 30824
17-03-18 03:59:33.434 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:33.434 -07 000000424 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:59:33.434 -07 000000467 INF: FPGA: Recv ZPIEZORD 26628
17-03-18 03:59:33.444 -07 000000424 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:33.444 -07 000000424 INF: Z Motor: Piezo is near 36.9 V (nominally 0 to 100 V), expect near 46.1 V, since DAC is at 4.612 V. Piezo Error = -9.2 V.
17-03-18 03:59:33.444 -07 000000424 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.3 um, Read 10 ADC samples: Avg = 30826 (-137.6 uncal um), Error = 0.8 uncal um, Median = 30826 (-137.6 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 30818 (-137.5 uncal um), Max = 30833 (-137.6 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 03:59:33.444 -07 000000424 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30826, posNoise = 7, negNoise = 8
17-03-18 03:59:33.444 -07 000000424 INF: Z Motor: After move to -0.138347, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:59:33.444 -07 000000424 INF: Z Motor: Settle wait time = 1453 ms, measure time = 107 ms (allowed 150 ms), total time = 1560 ms
17-03-18 03:59:33.444 -07 000000424 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-18 03:59:33.494 -07 000000424 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1615 ms
17-03-18 03:59:33.494 -07 000000424 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 03:59:33.494 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:59:33.494 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:59:33.494 -07 000000585 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:59:33.494 -07 000000479 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:59:33.494 -07 000000625 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 03:59:33.494 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:59:33.504 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 03:59:33.504 -07 000000625 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 03:59:33.504 -07 000000625 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 03:59:33.504 -07 000000625 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 03:59:33.504 -07 000000625 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 03:59:33.504 -07 000000625 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-18 03:59:33.514 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 03:59:33.554 -07 000000561 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 03:59:33.854 -07 000000479 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 03:59:33.854 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 03:59:33.854 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 03:59:33.854 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2404584808, 0x0, 559484976) start.
17-03-18 03:59:33.894 -07 000000467 INF: FPGA: Recv @CAMSNAP 380
17-03-18 03:59:33.894 -07 000000625 INF: FPGA: Recv CAMSNAP
17-03-18 03:59:33.894 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 03:59:33.974 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2404584808, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 03:59:33.974 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:59:33.974 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 03:59:33.974 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 03:59:33.994 -07 000000437 INF: Autofocus start
17-03-18 03:59:33.994 -07 000000437 INF: MeasureProfile start
17-03-18 03:59:33.994 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 03:59:34.004 -07 000000579 INF: FPGA: Recv FOCMRRCUR 
17-03-18 03:59:34.004 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 6 ms overall
17-03-18 03:59:34.004 -07 000000424 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 03:59:34.004 -07 000000437 INF: MeasureProfile done
17-03-18 03:59:34.004 -07 000000437 INF: X=16  Z correction [um]=0.0530179
17-03-18 03:59:34.004 -07 000000437 INF: Autofocus finished
17-03-18 03:59:34.204 -07 000000480 INF: FPGA: Recv FOCMRRIMG
17-03-18 03:59:34.204 -07 000000424 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 195 ms to get response, and 202 ms overall
17-03-18 03:59:34.204 -07 000000610 INF: ------------ Scan Snapping tile 5 at Y-position 63.22412109375, Z-position -0.138356115493058. ----------
17-03-18 03:59:34.214 -07 000000610 INF: Cycle	119	Tile	5	Exposure Settings		A	413	G	199	T	199	C	413
17-03-18 03:59:34.214 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28746, sync = True, waitForSettling = True)
17-03-18 03:59:34.214 -07 000000610 INF: Z Motor: Moving to -0.131591 mm, started at -0.138356 mm, distance = 6.77 um
17-03-18 03:59:34.214 -07 000000610 INF: FPGA: Xmit ZDACW 28746\n [Z Motor]
17-03-18 03:59:34.214 -07 000000480 INF: FPGA: Recv ZDACW
17-03-18 03:59:34.224 -07 000000610 INF: FPGA: 'ZDACW 28746' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 03:59:34.224 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:59:34.224 -07 000000561 INF: FPGA: Recv ZDACR 28746
17-03-18 03:59:34.234 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:34.234 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 03:59:34.384 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:34.384 -07 000000618 INF: FPGA: Recv ZSGSRD 29777
17-03-18 03:59:34.394 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:59:34.394 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:34.394 -07 000000424 INF: FPGA: Recv ZSGSRD 29772
17-03-18 03:59:34.404 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:34.404 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:34.404 -07 000000608 INF: FPGA: Recv ZSGSRD 29769
17-03-18 03:59:34.414 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:34.414 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:34.414 -07 000000480 INF: FPGA: Recv ZSGSRD 29776
17-03-18 03:59:34.424 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:34.424 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:34.424 -07 000000618 INF: FPGA: Recv ZSGSRD 29770
17-03-18 03:59:34.434 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:34.434 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:34.434 -07 000000437 INF: FPGA: Recv ZSGSRD 29772
17-03-18 03:59:34.444 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:34.444 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:34.444 -07 000000608 INF: FPGA: Recv ZSGSRD 29774
17-03-18 03:59:34.454 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:34.454 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:34.454 -07 000000467 INF: FPGA: Recv ZSGSRD 29771
17-03-18 03:59:34.464 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:34.464 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:34.464 -07 000000618 INF: FPGA: Recv ZSGSRD 29780
17-03-18 03:59:34.474 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:34.474 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:34.474 -07 000000579 INF: FPGA: Recv ZSGSRD 29769
17-03-18 03:59:34.484 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:34.484 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:59:34.484 -07 000000579 INF: FPGA: Recv ZPIEZORD 25207
17-03-18 03:59:34.494 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:34.494 -07 000000610 INF: Z Motor: Piezo is near 33.8 V (nominally 0 to 100 V), expect near 43.9 V, since DAC is at 4.386 V. Piezo Error = -10.0 V.
17-03-18 03:59:34.494 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.6 um, Read 10 ADC samples: Avg = 29773 (-130.8 uncal um), Error = 0.8 uncal um, Median = 29772 (-130.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29769 (-130.8 uncal um), Max = 29780 (-130.9 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 03:59:34.494 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29773, posNoise = 7, negNoise = 4
17-03-18 03:59:34.494 -07 000000610 INF: Z Motor: After move to -0.131591, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:59:34.494 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-18 03:59:34.494 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:59:34.494 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:59:34.494 -07 000000579 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:59:34.494 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:59:34.494 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 03:59:34.494 -07 000000579 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 03:59:34.494 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:59:34.494 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 03:59:34.494 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 03:59:34.494 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 03:59:34.494 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 03:59:34.494 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 03:59:34.504 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 03:59:34.504 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 03:59:34.504 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 03:59:34.504 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 03:59:34.514 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 11 ms.
17-03-18 03:59:34.514 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 17 ms.
17-03-18 03:59:34.514 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 12 ms.
17-03-18 03:59:34.514 -07 000000579 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 17 ms.
17-03-18 03:59:34.524 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 413 413 199 199 28922 150\n [Camera]
17-03-18 03:59:34.714 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 03:59:34.834 -07 000000579 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 119, FrontChillerTemperature: 3.986717,
17-03-18 03:59:35.134 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 605
17-03-18 03:59:35.134 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 605
17-03-18 03:59:35.134 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:59:35.134 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:59:35.134 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-18 03:59:35.134 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 605
17-03-18 03:59:35.134 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 605
17-03-18 03:59:35.134 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:59:35.134 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:59:35.134 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-18 03:59:35.524 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 394 ms.
17-03-18 03:59:35.524 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-18 03:59:35.524 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:59:35.534 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 393 ms.
17-03-18 03:59:35.534 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-18 03:59:35.534 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:59:35.534 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 03:59:35.534 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 03:59:35.534 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 03:59:35.544 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 405 ms.
17-03-18 03:59:35.544 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28922 798
17-03-18 03:59:35.544 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning grn on 948
17-03-18 03:59:35.674 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1147
17-03-18 03:59:35.684 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1147
17-03-18 03:59:35.684 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1147
17-03-18 03:59:35.684 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:59:35.684 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:59:35.684 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) start.
17-03-18 03:59:35.684 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1147
17-03-18 03:59:35.684 -07 000000437 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:59:35.684 -07 000000437 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:59:35.684 -07 000000437 INF: Camera: sBCa_ReadImage(785074704, 2486767776, 0x0, 418435064) start.
17-03-18 03:59:35.864 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP 1340
17-03-18 03:59:35.864 -07 000000512 INF: FPGA: Recv CAMDBLSNAP
17-03-18 03:59:35.864 -07 000000610 INF: FPGA: 'CAMDBLSNAP 413 413 199 199 28922 150' command took 2 ms to send, 1339 ms to get response, and 1352 ms overall
17-03-18 03:59:35.874 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 03:59:35.874 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 6 at Y-position 63.22412109375, Z-Position -0.131591420107784. ------
17-03-18 03:59:35.874 -07 000000467 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.0626 mm, moving Z to -0.13770 mm
17-03-18 03:59:35.874 -07 000000467 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 03:59:35.874 -07 000000608 INF: Z Motor: Entering MoveAbsStepped (DAC = 30081, sync = True, waitForSettling = False)
17-03-18 03:59:35.874 -07 000000608 INF: Z Motor: Moving to -0.137702 mm, started at -0.131591 mm, distance = -6.11 um
17-03-18 03:59:35.884 -07 000000625 INF: Y Motor: Entering MoveAbsStepped (target = 102500 steps, sync = True, waitForSettling = True)
17-03-18 03:59:35.884 -07 000000625 INF: Y Motor: Moving to 64.0626 mm, started at 63.2241 mm, delta = 0.8385 mm
17-03-18 03:59:35.894 -07 000000561 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 03:59:35.894 -07 000000012 INF: FPGA: Recv FOCMRRCUR 
17-03-18 03:59:35.904 -07 000000561 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-18 03:59:35.904 -07 000000608 INF: FPGA: Xmit ZDACW 30081\n [Z Motor]
17-03-18 03:59:35.904 -07 000000512 INF: FPGA: Recv ZDACW
17-03-18 03:59:35.914 -07 000000608 INF: FPGA: 'ZDACW 30081' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 03:59:35.914 -07 000000625 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:59:35.914 -07 000000590 INF: FPGA: Recv YRDPOS 129483
17-03-18 03:59:35.924 -07 000000561 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 03:59:35.924 -07 000000625 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 39 ms overall
17-03-18 03:59:35.924 -07 000000625 INF: Y Motor: Encoder = 129483 = motor step 101158.6 = 63.2241 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:59:35.924 -07 000000625 INF: Y Motor: Last commanded position = 63.2326 mm (101172.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 03:59:35.924 -07 000000625 INF: Y Motor: Moving 1342 steps-18
17-03-18 03:59:35.934 -07 000000608 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:59:35.934 -07 000000447 INF: FPGA: Recv ZDACR 30081
17-03-18 03:59:35.944 -07 000000625 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 03:59:35.944 -07 000000608 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 03:59:35.944 -07 000000608 INF: Z Motor: MoveAbsStepped took 60 ms (did NOT wait for settling yet))
17-03-18 03:59:36.074 -07 000000437 INF: Camera: sBCa_ReadImage(785074704, 2486767776, 0x0, 418435064) end. Duration was 394 ms.
17-03-18 03:59:36.074 -07 000000437 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-18 03:59:36.074 -07 000000437 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:59:36.084 -07 000000437 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:59:36.084 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) end. Duration was 399 ms.
17-03-18 03:59:36.084 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 03:59:36.084 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:59:36.084 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 03:59:36.084 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-18 03:59:36.084 -07 000000437 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-18 03:59:36.124 -07 000000447 INF: FPGA: Recv FOCMRRFOC
17-03-18 03:59:36.124 -07 000000561 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 03:59:36.314 -07 000000447 INF: FPGA: Recv YMVTILE
17-03-18 03:59:36.314 -07 000000625 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 03:59:36.364 -07 000000625 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:59:36.374 -07 000000512 INF: FPGA: Recv YRDPOS 131189
17-03-18 03:59:36.374 -07 000000625 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 03:59:36.374 -07 000000625 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:59:36.374 -07 000000625 INF: Y Motor: Position error before settling (table move) = -11 encoder counts (-0.005 mm)
17-03-18 03:59:36.374 -07 000000625 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.838 mm, average velocity = 2.112 mm/sec
17-03-18 03:59:36.624 -07 000000437 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 03:59:36.624 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 118. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1701, R2=1769, Total=3470. Warn if over 250 bubbles per interval.
17-03-18 03:59:37.324 -07 000000625 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:59:37.324 -07 000000437 INF: FPGA: Recv YRDPOS 131189
17-03-18 03:59:37.334 -07 000000625 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:59:37.334 -07 000000625 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:59:37.354 -07 000000625 INF: Y Motor: After move to 64.062607, error = -0.005478, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 03:59:37.354 -07 000000625 INF: Y Motor: Position error after settling (table move) = -11 encoder counts (-0.005 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 03:59:37.354 -07 000000625 INF: Y Motor: Moved to 64.0571 after 1475 ms (table move)
17-03-18 03:59:37.354 -07 000000467 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137702 mm (DAC = 30081)
17-03-18 03:59:37.354 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:37.364 -07 000000625 INF: FPGA: Recv ZSGSRD 30732
17-03-18 03:59:37.364 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 2 ms overall
17-03-18 03:59:37.364 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:37.364 -07 000000590 INF: FPGA: Recv ZSGSRD 30725
17-03-18 03:59:37.374 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 03:59:37.374 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:37.374 -07 000000625 INF: FPGA: Recv ZSGSRD 30727
17-03-18 03:59:37.384 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:37.384 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:37.384 -07 000000625 INF: FPGA: Recv ZSGSRD 30723
17-03-18 03:59:37.394 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:37.394 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:37.394 -07 000000512 INF: FPGA: Recv ZSGSRD 30726
17-03-18 03:59:37.404 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:37.404 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:37.404 -07 000000512 INF: FPGA: Recv ZSGSRD 30730
17-03-18 03:59:37.414 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:37.414 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:37.414 -07 000000579 INF: FPGA: Recv ZSGSRD 30726
17-03-18 03:59:37.424 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:37.424 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:37.424 -07 000000608 INF: FPGA: Recv ZSGSRD 30724
17-03-18 03:59:37.434 -07 000000467 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:37.434 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:37.434 -07 000000608 INF: FPGA: Recv ZSGSRD 30722
17-03-18 03:59:37.444 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:37.444 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:37.444 -07 000000590 INF: FPGA: Recv ZSGSRD 30723
17-03-18 03:59:37.454 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:37.454 -07 000000467 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:59:37.454 -07 000000561 INF: FPGA: Recv ZPIEZORD 26485
17-03-18 03:59:37.464 -07 000000467 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:37.464 -07 000000467 INF: Z Motor: Piezo is near 36.6 V (nominally 0 to 100 V), expect near 45.9 V, since DAC is at 4.590 V. Piezo Error = -9.3 V.
17-03-18 03:59:37.464 -07 000000467 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.7 um, Read 10 ADC samples: Avg = 30726 (-136.9 uncal um), Error = 0.8 uncal um, Median = 30726 (-136.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 30722 (-136.9 uncal um), Max = 30732 (-137.0 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 03:59:37.464 -07 000000467 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30726, posNoise = 6, negNoise = 4
17-03-18 03:59:37.464 -07 000000467 INF: Z Motor: After move to -0.137702, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:59:37.464 -07 000000467 INF: Z Motor: Settle wait time = 1479 ms, measure time = 101 ms (allowed 150 ms), total time = 1580 ms
17-03-18 03:59:37.464 -07 000000467 INF: Z Motor: Waiting extra 49 ms after reading position to reach expected total of 150 ms
17-03-18 03:59:37.514 -07 000000467 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1635 ms
17-03-18 03:59:37.514 -07 000000467 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 03:59:37.514 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:59:37.514 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:59:37.514 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:59:37.514 -07 000000625 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:59:37.514 -07 000000512 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 03:59:37.514 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:59:37.514 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 03:59:37.514 -07 000000512 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 03:59:37.524 -07 000000512 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 03:59:37.524 -07 000000512 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 03:59:37.524 -07 000000512 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 8 ms.
17-03-18 03:59:37.524 -07 000000512 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-18 03:59:37.534 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 03:59:37.574 -07 000000561 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 03:59:37.874 -07 000000437 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 03:59:37.874 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 03:59:37.874 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 03:59:37.874 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1201016592, 0x0, 559484976) start.
17-03-18 03:59:37.914 -07 000000462 INF: FPGA: Recv @CAMSNAP 380
17-03-18 03:59:37.914 -07 000000591 INF: FPGA: Recv CAMSNAP
17-03-18 03:59:37.914 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 384 ms overall
17-03-18 03:59:37.994 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1201016592, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 03:59:37.994 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:59:37.994 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 03:59:37.994 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-18 03:59:38.014 -07 000000467 INF: Autofocus start
17-03-18 03:59:38.014 -07 000000467 INF: MeasureProfile start
17-03-18 03:59:38.014 -07 000000447 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 03:59:38.014 -07 000000512 INF: FPGA: Recv FOCMRRCUR 
17-03-18 03:59:38.024 -07 000000447 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 03:59:38.024 -07 000000447 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 03:59:38.024 -07 000000467 INF: MeasureProfile done
17-03-18 03:59:38.024 -07 000000467 INF: X=0  Z correction [um]=-0.02394831
17-03-18 03:59:38.024 -07 000000467 INF: Autofocus finished
17-03-18 03:59:38.224 -07 000000012 INF: FPGA: Recv FOCMRRIMG
17-03-18 03:59:38.224 -07 000000447 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 202 ms overall
17-03-18 03:59:38.224 -07 000000610 INF: ------------ Scan Snapping tile 6 at Y-position 64.05712890625, Z-position -0.137713694278882. ----------
17-03-18 03:59:38.224 -07 000000610 INF: Cycle	119	Tile	6	Exposure Settings		A	413	G	199	T	199	C	413
17-03-18 03:59:38.234 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28588, sync = True, waitForSettling = True)
17-03-18 03:59:38.234 -07 000000610 INF: Z Motor: Moving to -0.130867 mm, started at -0.137714 mm, distance = 6.85 um
17-03-18 03:59:38.234 -07 000000610 INF: FPGA: Xmit ZDACW 28588\n [Z Motor]
17-03-18 03:59:38.234 -07 000000591 INF: FPGA: Recv ZDACW
17-03-18 03:59:38.244 -07 000000610 INF: FPGA: 'ZDACW 28588' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 03:59:38.244 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:59:38.244 -07 000000608 INF: FPGA: Recv ZDACR 28588
17-03-18 03:59:38.254 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:38.254 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 03:59:38.404 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:38.404 -07 000000625 INF: FPGA: Recv ZSGSRD 29659
17-03-18 03:59:38.414 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:59:38.414 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:38.414 -07 000000579 INF: FPGA: Recv ZSGSRD 29665
17-03-18 03:59:38.424 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:38.424 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:38.424 -07 000000467 INF: FPGA: Recv ZSGSRD 29659
17-03-18 03:59:38.434 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:38.434 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:38.434 -07 000000467 INF: FPGA: Recv ZSGSRD 29660
17-03-18 03:59:38.444 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:38.444 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:38.444 -07 000000467 INF: FPGA: Recv ZSGSRD 29659
17-03-18 03:59:38.454 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:38.454 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:38.454 -07 000000467 INF: FPGA: Recv ZSGSRD 29666
17-03-18 03:59:38.464 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:38.464 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:38.464 -07 000000467 INF: FPGA: Recv ZSGSRD 29663
17-03-18 03:59:38.474 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:38.474 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:38.474 -07 000000467 INF: FPGA: Recv ZSGSRD 29659
17-03-18 03:59:38.484 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:38.484 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:38.484 -07 000000467 INF: FPGA: Recv ZSGSRD 29659
17-03-18 03:59:38.494 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:38.494 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:38.494 -07 000000467 INF: FPGA: Recv ZSGSRD 29663
17-03-18 03:59:38.504 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:38.504 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:59:38.504 -07 000000467 INF: FPGA: Recv ZPIEZORD 25107
17-03-18 03:59:38.514 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:38.514 -07 000000610 INF: Z Motor: Piezo is near 33.6 V (nominally 0 to 100 V), expect near 43.6 V, since DAC is at 4.362 V. Piezo Error = -10.0 V.
17-03-18 03:59:38.514 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.9 um, Read 10 ADC samples: Avg = 29661 (-130.1 uncal um), Error = 0.8 uncal um, Median = 29660 (-130.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 29659 (-130.1 uncal um), Max = 29666 (-130.1 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 2 (0.0 uncal um)
17-03-18 03:59:38.514 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29661, posNoise = 5, negNoise = 2
17-03-18 03:59:38.514 -07 000000610 INF: Z Motor: After move to -0.130867, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:59:38.514 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 03:59:38.514 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:59:38.514 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:59:38.514 -07 000000467 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:59:38.514 -07 000000467 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:59:38.514 -07 000000467 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 03:59:38.514 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:59:38.524 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 03:59:38.524 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 03:59:38.524 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 03:59:38.524 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 03:59:38.534 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 03:59:38.534 -07 000000467 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 12 ms.
17-03-18 03:59:38.534 -07 000000467 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 03:59:38.534 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 03:59:38.534 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 03:59:38.534 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 03:59:38.534 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 03:59:38.534 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 03:59:38.544 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 03:59:38.544 -07 000000467 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 11 ms.
17-03-18 03:59:38.544 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 413 413 199 199 28765 150\n [Camera]
17-03-18 03:59:38.744 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 03:59:39.164 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 605
17-03-18 03:59:39.164 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 605
17-03-18 03:59:39.164 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:59:39.164 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:59:39.164 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) start.
17-03-18 03:59:39.544 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) end. Duration was 383 ms.
17-03-18 03:59:39.544 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-18 03:59:39.544 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:59:39.544 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-18 03:59:39.544 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-18 03:59:39.554 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 605
17-03-18 03:59:39.554 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28765 798
17-03-18 03:59:39.554 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP turning grn on 950
17-03-18 03:59:39.554 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 605
17-03-18 03:59:39.564 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:59:39.564 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:59:39.564 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) start.
17-03-18 03:59:39.944 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) end. Duration was 380 ms.
17-03-18 03:59:39.944 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-18 03:59:39.944 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:59:39.944 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-18 03:59:39.954 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-18 03:59:39.964 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1150
17-03-18 03:59:39.964 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1150
17-03-18 03:59:39.964 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP 1340
17-03-18 03:59:39.964 -07 000000502 INF: FPGA: Recv CAMDBLSNAP
17-03-18 03:59:39.964 -07 000000610 INF: FPGA: 'CAMDBLSNAP 413 413 199 199 28765 150' command took 2 ms to send, 1404 ms to get response, and 1416 ms overall
17-03-18 03:59:39.964 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1150
17-03-18 03:59:39.964 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1150
17-03-18 03:59:39.964 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:59:39.964 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:59:39.964 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 2620985504, 0x0, 418435064) start.
17-03-18 03:59:39.964 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:59:39.964 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:59:39.964 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 2684358704, 0x0, 391868352) start.
17-03-18 03:59:40.064 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 03:59:40.064 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 7 at Y-position 64.05712890625, Z-Position -0.130871908347907. ------
17-03-18 03:59:40.064 -07 000000585 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 03:59:40.064 -07 000000479 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.8926 mm, moving Z to -0.13746 mm
17-03-18 03:59:40.064 -07 000000479 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 03:59:40.074 -07 000000424 INF: Y Motor: Entering MoveAbsStepped (target = 103828 steps, sync = True, waitForSettling = True)
17-03-18 03:59:40.074 -07 000000424 INF: Y Motor: Moving to 64.8926 mm, started at 64.0571 mm, delta = 0.8355 mm
17-03-18 03:59:40.074 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:59:40.074 -07 000000502 INF: Z Motor: Entering MoveAbsStepped (DAC = 30027, sync = True, waitForSettling = False)
17-03-18 03:59:40.074 -07 000000502 INF: Z Motor: Moving to -0.137455 mm, started at -0.130872 mm, distance = -6.58 um
17-03-18 03:59:40.074 -07 000000012 INF: FPGA: Recv FOCMRRCUR 
17-03-18 03:59:40.074 -07 000000585 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 6 ms overall
17-03-18 03:59:40.074 -07 000000618 INF: FPGA: Recv YRDPOS 131189
17-03-18 03:59:40.084 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:40.084 -07 000000424 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:59:40.084 -07 000000424 INF: Y Motor: Last commanded position = 64.0626 mm (102500.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 03:59:40.084 -07 000000424 INF: Y Motor: Moving 1337 steps-11
17-03-18 03:59:40.084 -07 000000585 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 03:59:40.094 -07 000000502 INF: FPGA: Xmit ZDACW 30027\n [Z Motor]
17-03-18 03:59:40.094 -07 000000512 INF: FPGA: Recv ZDACW
17-03-18 03:59:40.104 -07 000000424 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 03:59:40.104 -07 000000502 INF: FPGA: 'ZDACW 30027' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 03:59:40.114 -07 000000502 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:59:40.114 -07 000000618 INF: FPGA: Recv ZDACR 30027
17-03-18 03:59:40.124 -07 000000502 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 03:59:40.124 -07 000000502 INF: Z Motor: MoveAbsStepped took 49 ms (did NOT wait for settling yet))
17-03-18 03:59:40.274 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 119, FrontChillerTemperature: 3.969015,
17-03-18 03:59:40.284 -07 000000480 INF: FPGA: Recv FOCMRRFOC
17-03-18 03:59:40.284 -07 000000585 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 194 ms to get response, and 213 ms overall
17-03-18 03:59:40.364 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 2620985504, 0x0, 418435064) end. Duration was 400 ms.
17-03-18 03:59:40.364 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 03:59:40.364 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:59:40.364 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 2684358704, 0x0, 391868352) end. Duration was 402 ms.
17-03-18 03:59:40.364 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 03:59:40.364 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:59:40.374 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:59:40.374 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 03:59:40.374 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 410 ms.
17-03-18 03:59:40.374 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-18 03:59:40.474 -07 000000512 INF: FPGA: Recv YMVTILE
17-03-18 03:59:40.474 -07 000000424 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 398 ms overall
17-03-18 03:59:40.524 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:59:40.524 -07 000000480 INF: FPGA: Recv YRDPOS 132872
17-03-18 03:59:40.534 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 03:59:40.534 -07 000000424 INF: Y Motor: Encoder = 132872 = motor step 103806.3 = 64.8789 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:59:40.534 -07 000000424 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-18 03:59:40.534 -07 000000424 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.835 mm, average velocity = 2.099 mm/sec
17-03-18 03:59:41.484 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:59:41.484 -07 000000480 INF: FPGA: Recv YRDPOS 132872
17-03-18 03:59:41.494 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:59:41.494 -07 000000424 INF: Y Motor: Encoder = 132872 = motor step 103806.3 = 64.8789 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:59:41.524 -07 000000424 INF: Y Motor: After move to 64.892609, error = -0.013702, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 03:59:41.524 -07 000000424 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 03:59:41.524 -07 000000424 INF: Y Motor: Moved to 64.8789 after 1450 ms (table move)
17-03-18 03:59:41.524 -07 000000479 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137455 mm (DAC = 30027)
17-03-18 03:59:41.524 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:41.524 -07 000000618 INF: FPGA: Recv ZSGSRD 30689
17-03-18 03:59:41.534 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 03:59:41.534 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:41.534 -07 000000467 INF: FPGA: Recv ZSGSRD 30690
17-03-18 03:59:41.544 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:41.544 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:41.544 -07 000000424 INF: FPGA: Recv ZSGSRD 30684
17-03-18 03:59:41.554 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 03:59:41.554 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:41.554 -07 000000480 INF: FPGA: Recv ZSGSRD 30692
17-03-18 03:59:41.564 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:41.564 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:41.564 -07 000000561 INF: FPGA: Recv ZSGSRD 30693
17-03-18 03:59:41.574 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:41.574 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:42.084 -07 000000502 INF: FPGA: Recv ZSGSRD 30689
17-03-18 03:59:42.084 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 03:59:42.084 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 500 ms to get response, and 510 ms overall
17-03-18 03:59:42.084 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:42.084 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 118. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1701, R2=1769, Total=3470. Warn if over 250 bubbles per interval.
17-03-18 03:59:42.084 -07 000000591 INF: FPGA: Recv ZSGSRD 30689
17-03-18 03:59:42.094 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 03:59:42.094 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:42.094 -07 000000585 INF: FPGA: Recv ZSGSRD 30694
17-03-18 03:59:42.104 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:42.104 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:42.104 -07 000000424 INF: FPGA: Recv ZSGSRD 30688
17-03-18 03:59:42.114 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:42.114 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:42.114 -07 000000561 INF: FPGA: Recv ZSGSRD 30688
17-03-18 03:59:42.124 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:42.124 -07 000000479 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:59:42.124 -07 000000591 INF: FPGA: Recv ZPIEZORD 26473
17-03-18 03:59:42.134 -07 000000479 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:42.134 -07 000000479 INF: Z Motor: Piezo is near 36.6 V (nominally 0 to 100 V), expect near 45.8 V, since DAC is at 4.582 V. Piezo Error = -9.3 V.
17-03-18 03:59:42.134 -07 000000479 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.5 um, Read 10 ADC samples: Avg = 30690 (-136.7 uncal um), Error = 0.8 uncal um, Median = 30689 (-136.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 30684 (-136.6 uncal um), Max = 30694 (-136.7 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 03:59:42.134 -07 000000479 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30690, posNoise = 4, negNoise = 6
17-03-18 03:59:42.134 -07 000000479 INF: Z Motor: After move to -0.137455, error = -0.000028, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:59:42.134 -07 000000479 INF: Z Motor: Settle wait time = 1453 ms, measure time = 607 ms (allowed 150 ms), total time = 2060 ms
17-03-18 03:59:42.134 -07 000000479 INF: Z Motor: Warning: Actual position measuring time = 607 ms, longer than max expected time of 150 ms
17-03-18 03:59:42.134 -07 000000479 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2065 ms
17-03-18 03:59:42.134 -07 000000479 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 03:59:42.134 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:59:42.134 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:59:42.134 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:59:42.134 -07 000000012 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:59:42.134 -07 000000467 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 03:59:42.134 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:59:42.134 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 03:59:42.134 -07 000000467 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 03:59:42.144 -07 000000467 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 03:59:42.144 -07 000000467 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 03:59:42.144 -07 000000467 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 03:59:42.144 -07 000000467 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-18 03:59:42.154 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 03:59:42.194 -07 000000591 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 03:59:42.494 -07 000000012 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 03:59:42.494 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 03:59:42.494 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 03:59:42.494 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2253754584, 0x0, 559484976) start.
17-03-18 03:59:42.534 -07 000000561 INF: FPGA: Recv @CAMSNAP 380
17-03-18 03:59:42.534 -07 000000512 INF: FPGA: Recv CAMSNAP
17-03-18 03:59:42.534 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 03:59:42.624 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2253754584, 0x0, 559484976) end. Duration was 125 ms.
17-03-18 03:59:42.624 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:59:42.624 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 03:59:42.624 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 127 ms.
17-03-18 03:59:42.634 -07 000000012 INF: Autofocus start
17-03-18 03:59:42.634 -07 000000012 INF: MeasureProfile start
17-03-18 03:59:42.634 -07 000000591 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 03:59:42.634 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-18 03:59:42.644 -07 000000591 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 03:59:42.644 -07 000000591 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 03:59:42.644 -07 000000012 INF: MeasureProfile done
17-03-18 03:59:42.644 -07 000000012 INF: X=0  Z correction [um]=-0.02394831
17-03-18 03:59:42.644 -07 000000012 INF: Autofocus finished
17-03-18 03:59:42.844 -07 000000585 INF: FPGA: Recv FOCMRRIMG
17-03-18 03:59:42.844 -07 000000591 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 03:59:42.844 -07 000000610 INF: ------------ Scan Snapping tile 7 at Y-position 64.87890625, Z-position -0.137482422641779. ----------
17-03-18 03:59:42.844 -07 000000610 INF: Cycle	119	Tile	7	Exposure Settings		A	413	G	199	T	199	C	413
17-03-18 03:59:42.854 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28535, sync = True, waitForSettling = True)
17-03-18 03:59:42.854 -07 000000610 INF: Z Motor: Moving to -0.130625 mm, started at -0.137482 mm, distance = 6.86 um
17-03-18 03:59:42.854 -07 000000610 INF: FPGA: Xmit ZDACW 28535\n [Z Motor]
17-03-18 03:59:42.854 -07 000000512 INF: FPGA: Recv ZDACW
17-03-18 03:59:42.864 -07 000000610 INF: FPGA: 'ZDACW 28535' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 03:59:42.864 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:59:42.864 -07 000000591 INF: FPGA: Recv ZDACR 28535
17-03-18 03:59:42.874 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:42.874 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 03:59:43.024 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:43.024 -07 000000512 INF: FPGA: Recv ZSGSRD 29630
17-03-18 03:59:43.034 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:59:43.034 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:43.034 -07 000000502 INF: FPGA: Recv ZSGSRD 29621
17-03-18 03:59:43.044 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:43.044 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:43.044 -07 000000479 INF: FPGA: Recv ZSGSRD 29624
17-03-18 03:59:43.054 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:43.054 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:43.054 -07 000000502 INF: FPGA: Recv ZSGSRD 29625
17-03-18 03:59:43.064 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:43.064 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:43.064 -07 000000479 INF: FPGA: Recv ZSGSRD 29620
17-03-18 03:59:43.074 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:43.074 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:43.074 -07 000000591 INF: FPGA: Recv ZSGSRD 29634
17-03-18 03:59:43.084 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:43.084 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:43.084 -07 000000502 INF: FPGA: Recv ZSGSRD 29622
17-03-18 03:59:43.094 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:43.094 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:43.094 -07 000000591 INF: FPGA: Recv ZSGSRD 29623
17-03-18 03:59:43.104 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:43.104 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:43.104 -07 000000012 INF: FPGA: Recv ZSGSRD 29622
17-03-18 03:59:43.114 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:43.114 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:43.114 -07 000000561 INF: FPGA: Recv ZSGSRD 29623
17-03-18 03:59:43.124 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:43.124 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:59:43.124 -07 000000012 INF: FPGA: Recv ZPIEZORD 25080
17-03-18 03:59:43.134 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:43.134 -07 000000610 INF: Z Motor: Piezo is near 33.6 V (nominally 0 to 100 V), expect near 43.5 V, since DAC is at 4.354 V. Piezo Error = -10.0 V.
17-03-18 03:59:43.134 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.6 um, Read 10 ADC samples: Avg = 29624 (-129.9 uncal um), Error = 0.8 uncal um, Median = 29623 (-129.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 29620 (-129.8 uncal um), Max = 29634 (-129.9 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 03:59:43.134 -07 000000610 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29624, posNoise = 10, negNoise = 4
17-03-18 03:59:43.134 -07 000000610 INF: Z Motor: After move to -0.130625, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:59:43.134 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 03:59:43.134 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:59:43.134 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:59:43.134 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:59:43.134 -07 000000479 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 03:59:43.134 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:59:43.134 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 03:59:43.134 -07 000000585 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:59:43.134 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 03:59:43.134 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 03:59:43.134 -07 000000479 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 03:59:43.134 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 03:59:43.134 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 03:59:43.134 -07 000000479 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 03:59:43.134 -07 000000479 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 03:59:43.144 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 03:59:43.144 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 03:59:43.144 -07 000000479 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 03:59:43.144 -07 000000479 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 03:59:43.154 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 03:59:43.154 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 03:59:43.154 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 413 413 199 199 28711 150\n [Camera]
17-03-18 03:59:43.354 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 03:59:43.764 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 605
17-03-18 03:59:43.764 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 605
17-03-18 03:59:43.764 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:59:43.764 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:59:43.764 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 2719780968, 0x0, 391868352) start.
17-03-18 03:59:43.774 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 605
17-03-18 03:59:43.774 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 605
17-03-18 03:59:43.774 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:59:43.774 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:59:43.774 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2755203232, 0x0, 418435064) start.
17-03-18 03:59:43.954 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28711 798
17-03-18 03:59:44.104 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP turning grn on 948
17-03-18 03:59:44.164 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 2719780968, 0x0, 391868352) end. Duration was 400 ms.
17-03-18 03:59:44.164 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 03:59:44.164 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:59:44.174 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:59:44.174 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 03:59:44.174 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2755203232, 0x0, 418435064) end. Duration was 400 ms.
17-03-18 03:59:44.174 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 03:59:44.174 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:59:44.174 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:59:44.184 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-18 03:59:44.304 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1147
17-03-18 03:59:44.304 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1147
17-03-18 03:59:44.304 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:59:44.444 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1147
17-03-18 03:59:44.454 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1147
17-03-18 03:59:44.454 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:59:44.454 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:59:44.454 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 2818576432, 0x0, 391868352) start.
17-03-18 03:59:44.454 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:59:44.454 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2298580584, 0x0, 418435064) start.
17-03-18 03:59:44.494 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP 1339
17-03-18 03:59:44.494 -07 000000585 INF: FPGA: Recv CAMDBLSNAP
17-03-18 03:59:44.494 -07 000000610 INF: FPGA: 'CAMDBLSNAP 413 413 199 199 28711 150' command took 2 ms to send, 1339 ms to get response, and 1346 ms overall
17-03-18 03:59:44.504 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 03:59:44.504 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 8 at Y-position 64.87890625, Z-Position -0.130634212498662. ------
17-03-18 03:59:44.504 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 03:59:44.504 -07 000000012 INF: Y Motor: MoveYZ optimized starting. Moving Y to 65.7226 mm, moving Z to -0.13729 mm
17-03-18 03:59:44.504 -07 000000012 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 03:59:44.504 -07 000000424 INF: Y Motor: Entering MoveAbsStepped (target = 105156 steps, sync = True, waitForSettling = True)
17-03-18 03:59:44.504 -07 000000467 INF: FPGA: Recv FOCMRRCUR 
17-03-18 03:59:44.504 -07 000000424 INF: Y Motor: Moving to 65.7226 mm, started at 64.8789 mm, delta = 0.8437 mm
17-03-18 03:59:44.504 -07 000000479 INF: Z Motor: Entering MoveAbsStepped (DAC = 29991, sync = True, waitForSettling = False)
17-03-18 03:59:44.504 -07 000000479 INF: Z Motor: Moving to -0.137290 mm, started at -0.130634 mm, distance = -6.66 um
17-03-18 03:59:44.514 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 03:59:44.514 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:59:44.514 -07 000000561 INF: FPGA: Recv YRDPOS 132872
17-03-18 03:59:44.524 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-18 03:59:44.524 -07 000000424 INF: Y Motor: Encoder = 132872 = motor step 103806.3 = 64.8789 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:59:44.524 -07 000000424 INF: Y Motor: Last commanded position = 64.8926 mm (103828.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 03:59:44.524 -07 000000424 INF: Y Motor: Moving 1350 steps-28
17-03-18 03:59:44.524 -07 000000502 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 03:59:44.534 -07 000000479 INF: FPGA: Xmit ZDACW 29991\n [Z Motor]
17-03-18 03:59:44.534 -07 000000467 INF: FPGA: Recv ZDACW
17-03-18 03:59:44.544 -07 000000479 INF: FPGA: 'ZDACW 29991' command took 2 ms to send, 0 ms to get response, and 30 ms overall
17-03-18 03:59:44.544 -07 000000424 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 03:59:44.554 -07 000000479 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:59:44.554 -07 000000467 INF: FPGA: Recv ZDACR 29991
17-03-18 03:59:44.564 -07 000000479 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 03:59:44.564 -07 000000479 INF: Z Motor: MoveAbsStepped took 50 ms (did NOT wait for settling yet))
17-03-18 03:59:44.724 -07 000000561 INF: FPGA: Recv FOCMRRFOC
17-03-18 03:59:44.724 -07 000000502 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 212 ms overall
17-03-18 03:59:44.854 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2298580584, 0x0, 418435064) end. Duration was 394 ms.
17-03-18 03:59:44.854 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-18 03:59:44.854 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:59:44.854 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 2818576432, 0x0, 391868352) end. Duration was 400 ms.
17-03-18 03:59:44.854 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 03:59:44.854 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:59:44.854 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:59:44.854 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:59:44.854 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 548 ms.
17-03-18 03:59:44.864 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-18 03:59:44.914 -07 000000585 INF: FPGA: Recv YMVTILE
17-03-18 03:59:44.914 -07 000000424 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 03:59:44.964 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:59:44.974 -07 000000591 INF: FPGA: Recv YRDPOS 134582
17-03-18 03:59:44.974 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 6 ms overall
17-03-18 03:59:44.974 -07 000000424 INF: Y Motor: Encoder = 134582 = motor step 105142.2 = 65.7139 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:59:44.974 -07 000000424 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-18 03:59:44.974 -07 000000424 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.844 mm, average velocity = 2.120 mm/sec
17-03-18 03:59:45.634 -07 000000467 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 119, FrontChillerTemperature: 4.011254,
17-03-18 03:59:45.924 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:59:45.924 -07 000000591 INF: FPGA: Recv YRDPOS 134582
17-03-18 03:59:45.934 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:59:45.934 -07 000000424 INF: Y Motor: Encoder = 134582 = motor step 105142.2 = 65.7139 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:59:45.964 -07 000000424 INF: Y Motor: After move to 65.722610, error = -0.008743, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 03:59:45.964 -07 000000424 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 03:59:45.964 -07 000000424 INF: Y Motor: Moved to 65.7139 after 1455 ms (table move)
17-03-18 03:59:45.964 -07 000000012 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137290 mm (DAC = 29991)
17-03-18 03:59:45.964 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:45.974 -07 000000608 INF: FPGA: Recv ZSGSRD 30665
17-03-18 03:59:45.974 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 03:59:45.974 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:45.974 -07 000000591 INF: FPGA: Recv ZSGSRD 30654
17-03-18 03:59:45.984 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 03:59:45.984 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:45.984 -07 000000561 INF: FPGA: Recv ZSGSRD 30662
17-03-18 03:59:45.994 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:45.994 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:45.994 -07 000000591 INF: FPGA: Recv ZSGSRD 30668
17-03-18 03:59:46.004 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:46.004 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:46.004 -07 000000467 INF: FPGA: Recv ZSGSRD 30664
17-03-18 03:59:46.014 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:46.014 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:46.014 -07 000000512 INF: FPGA: Recv ZSGSRD 30663
17-03-18 03:59:46.024 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:46.024 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:46.024 -07 000000512 INF: FPGA: Recv ZSGSRD 30654
17-03-18 03:59:46.034 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:46.034 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:46.034 -07 000000512 INF: FPGA: Recv ZSGSRD 30661
17-03-18 03:59:46.044 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:46.044 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:46.044 -07 000000512 INF: FPGA: Recv ZSGSRD 30660
17-03-18 03:59:46.054 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:46.054 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:46.054 -07 000000512 INF: FPGA: Recv ZSGSRD 30663
17-03-18 03:59:46.064 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:46.064 -07 000000012 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:59:46.064 -07 000000512 INF: FPGA: Recv ZPIEZORD 26447
17-03-18 03:59:46.074 -07 000000012 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:46.074 -07 000000012 INF: Z Motor: Piezo is near 36.5 V (nominally 0 to 100 V), expect near 45.8 V, since DAC is at 4.576 V. Piezo Error = -9.3 V.
17-03-18 03:59:46.074 -07 000000012 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.3 um, Read 10 ADC samples: Avg = 30661 (-136.5 uncal um), Error = 0.8 uncal um, Median = 30662 (-136.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 30654 (-136.5 uncal um), Max = 30668 (-136.5 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 03:59:46.074 -07 000000012 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30661, posNoise = 7, negNoise = 7
17-03-18 03:59:46.074 -07 000000012 INF: Z Motor: After move to -0.137290, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:59:46.074 -07 000000012 INF: Z Motor: Settle wait time = 1459 ms, measure time = 101 ms (allowed 150 ms), total time = 1560 ms
17-03-18 03:59:46.074 -07 000000012 INF: Z Motor: Waiting extra 49 ms after reading position to reach expected total of 150 ms
17-03-18 03:59:46.124 -07 000000012 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1614 ms
17-03-18 03:59:46.124 -07 000000012 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 03:59:46.124 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:59:46.124 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:59:46.124 -07 000000625 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:59:46.124 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:59:46.124 -07 000000608 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 03:59:46.124 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:59:46.124 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 03:59:46.124 -07 000000608 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 03:59:46.134 -07 000000608 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 03:59:46.134 -07 000000608 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 03:59:46.134 -07 000000608 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 03:59:46.134 -07 000000608 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-18 03:59:46.144 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 03:59:46.184 -07 000000512 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 03:59:46.484 -07 000000479 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 03:59:46.484 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 03:59:46.484 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 03:59:46.484 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2334002848, 0x0, 559484976) start.
17-03-18 03:59:46.524 -07 000000424 INF: FPGA: Recv @CAMSNAP 380
17-03-18 03:59:46.524 -07 000000467 INF: FPGA: Recv CAMSNAP
17-03-18 03:59:46.524 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 375 ms to get response, and 384 ms overall
17-03-18 03:59:46.604 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2334002848, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 03:59:46.604 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:59:46.604 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 03:59:46.604 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 116 ms.
17-03-18 03:59:46.624 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 03:59:46.624 -07 000000012 INF: Autofocus start
17-03-18 03:59:46.624 -07 000000012 INF: MeasureProfile start
17-03-18 03:59:46.624 -07 000000479 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 03:59:46.624 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 118. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1701, R2=1769, Total=3470. Warn if over 250 bubbles per interval.
17-03-18 03:59:46.624 -07 000000591 INF: FPGA: Recv FOCMRRCUR 
17-03-18 03:59:46.634 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 03:59:46.634 -07 000000424 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 03:59:46.634 -07 000000012 INF: MeasureProfile done
17-03-18 03:59:46.634 -07 000000012 INF: X=0  Z correction [um]=-0.02394831
17-03-18 03:59:46.634 -07 000000012 INF: Autofocus finished
17-03-18 03:59:46.834 -07 000000625 INF: FPGA: Recv FOCMRRIMG
17-03-18 03:59:46.834 -07 000000424 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 03:59:46.834 -07 000000610 INF: ------------ Scan Snapping tile 8 at Y-position 65.7138671875, Z-position -0.137296120489668. ----------
17-03-18 03:59:46.834 -07 000000610 INF: Cycle	119	Tile	8	Exposure Settings		A	413	G	199	T	199	C	413
17-03-18 03:59:46.844 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28498, sync = True, waitForSettling = True)
17-03-18 03:59:46.844 -07 000000610 INF: Z Motor: Moving to -0.130455 mm, started at -0.137296 mm, distance = 6.84 um
17-03-18 03:59:46.844 -07 000000610 INF: FPGA: Xmit ZDACW 28498\n [Z Motor]
17-03-18 03:59:46.844 -07 000000502 INF: FPGA: Recv ZDACW
17-03-18 03:59:46.854 -07 000000610 INF: FPGA: 'ZDACW 28498' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 03:59:46.854 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:59:46.854 -07 000000585 INF: FPGA: Recv ZDACR 28498
17-03-18 03:59:46.864 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:46.864 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 03:59:47.014 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:47.014 -07 000000424 INF: FPGA: Recv ZSGSRD 29595
17-03-18 03:59:47.024 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:59:47.024 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:47.024 -07 000000591 INF: FPGA: Recv ZSGSRD 29608
17-03-18 03:59:47.034 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:47.034 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:47.034 -07 000000625 INF: FPGA: Recv ZSGSRD 29594
17-03-18 03:59:47.044 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:47.044 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:47.044 -07 000000012 INF: FPGA: Recv ZSGSRD 29592
17-03-18 03:59:47.054 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:47.054 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:47.054 -07 000000424 INF: FPGA: Recv ZSGSRD 29592
17-03-18 03:59:47.064 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:47.064 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:47.064 -07 000000012 INF: FPGA: Recv ZSGSRD 29601
17-03-18 03:59:47.074 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:47.074 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:47.074 -07 000000479 INF: FPGA: Recv ZSGSRD 29601
17-03-18 03:59:47.084 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:47.084 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:47.084 -07 000000424 INF: FPGA: Recv ZSGSRD 29596
17-03-18 03:59:47.094 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:47.094 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:47.094 -07 000000012 INF: FPGA: Recv ZSGSRD 29594
17-03-18 03:59:47.104 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:47.104 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:47.104 -07 000000479 INF: FPGA: Recv ZSGSRD 29599
17-03-18 03:59:47.114 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:47.114 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:59:47.114 -07 000000424 INF: FPGA: Recv ZPIEZORD 25032
17-03-18 03:59:47.124 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:47.124 -07 000000610 INF: Z Motor: Piezo is near 33.5 V (nominally 0 to 100 V), expect near 43.5 V, since DAC is at 4.349 V. Piezo Error = -10.0 V.
17-03-18 03:59:47.124 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.5 um, Read 10 ADC samples: Avg = 29597 (-129.7 uncal um), Error = 0.8 uncal um, Median = 29596 (-129.7 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 29592 (-129.6 uncal um), Max = 29608 (-129.8 uncal um), Pos Noise = 11 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 03:59:47.124 -07 000000610 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29597, posNoise = 11, negNoise = 5
17-03-18 03:59:47.124 -07 000000610 INF: Z Motor: After move to -0.130455, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:59:47.124 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 03:59:47.124 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:59:47.124 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:59:47.124 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:59:47.124 -07 000000591 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:59:47.124 -07 000000625 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 03:59:47.124 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 03:59:47.124 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 03:59:47.124 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:59:47.124 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 03:59:47.124 -07 000000625 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 03:59:47.124 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 03:59:47.124 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 03:59:47.134 -07 000000625 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 03:59:47.134 -07 000000625 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 03:59:47.134 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 03:59:47.134 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 03:59:47.144 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 03:59:47.144 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 03:59:47.144 -07 000000625 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-18 03:59:47.144 -07 000000625 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 03:59:47.144 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 413 413 199 199 28675 150\n [Camera]
17-03-18 03:59:47.344 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 03:59:47.754 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 605
17-03-18 03:59:47.754 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 605
17-03-18 03:59:47.754 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:59:47.764 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 605
17-03-18 03:59:47.764 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 605
17-03-18 03:59:47.764 -07 000000625 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:59:47.764 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:59:47.764 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-18 03:59:47.774 -07 000000625 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:59:47.774 -07 000000625 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-18 03:59:47.954 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28675 798
17-03-18 03:59:48.094 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP turning grn on 948
17-03-18 03:59:48.164 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 397 ms.
17-03-18 03:59:48.164 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 03:59:48.164 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:59:48.164 -07 000000625 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 396 ms.
17-03-18 03:59:48.164 -07 000000625 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 03:59:48.164 -07 000000625 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:59:48.174 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 03:59:48.174 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 412 ms.
17-03-18 03:59:48.174 -07 000000625 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 03:59:48.174 -07 000000625 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 417 ms.
17-03-18 03:59:48.294 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1147
17-03-18 03:59:48.294 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1147
17-03-18 03:59:48.304 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:59:48.414 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1147
17-03-18 03:59:48.414 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1147
17-03-18 03:59:48.424 -07 000000625 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:59:48.424 -07 000000625 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:59:48.424 -07 000000625 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 03:59:48.424 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:59:48.424 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-18 03:59:48.494 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP 1339
17-03-18 03:59:48.494 -07 000000591 INF: FPGA: Recv CAMDBLSNAP
17-03-18 03:59:48.494 -07 000000610 INF: FPGA: 'CAMDBLSNAP 413 413 199 199 28675 150' command took 2 ms to send, 1341 ms to get response, and 1347 ms overall
17-03-18 03:59:48.494 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 03:59:48.494 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 9 at Y-position 65.7138671875, Z-Position -0.130460758770834. ------
17-03-18 03:59:48.494 -07 000000424 INF: Y Motor: MoveYZ optimized starting. Moving Y to 66.5526 mm, moving Z to -0.13677 mm
17-03-18 03:59:48.494 -07 000000424 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 03:59:48.494 -07 000000012 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 03:59:48.504 -07 000000479 INF: Y Motor: Entering MoveAbsStepped (target = 106484 steps, sync = True, waitForSettling = True)
17-03-18 03:59:48.504 -07 000000479 INF: Y Motor: Moving to 66.5526 mm, started at 65.7139 mm, delta = 0.8387 mm
17-03-18 03:59:48.504 -07 000000479 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:59:48.504 -07 000000467 INF: FPGA: Recv FOCMRRCUR 
17-03-18 03:59:48.504 -07 000000012 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 03:59:48.504 -07 000000591 INF: Z Motor: Entering MoveAbsStepped (DAC = 29877, sync = True, waitForSettling = False)
17-03-18 03:59:48.504 -07 000000591 INF: Z Motor: Moving to -0.136768 mm, started at -0.130461 mm, distance = -6.31 um
17-03-18 03:59:48.504 -07 000000467 INF: FPGA: Recv YRDPOS 134583
17-03-18 03:59:48.514 -07 000000479 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:48.514 -07 000000479 INF: Y Motor: Encoder = 134583 = motor step 105143.0 = 65.7144 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:59:48.514 -07 000000012 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 03:59:48.514 -07 000000479 INF: Y Motor: Last commanded position = 65.7226 mm (105156.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 03:59:48.514 -07 000000479 INF: Y Motor: Moving 1341 steps-18
17-03-18 03:59:48.524 -07 000000591 INF: FPGA: Xmit ZDACW 29877\n [Z Motor]
17-03-18 03:59:48.524 -07 000000467 INF: FPGA: Recv ZDACW
17-03-18 03:59:48.534 -07 000000479 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 03:59:48.534 -07 000000591 INF: FPGA: 'ZDACW 29877' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-18 03:59:48.544 -07 000000591 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:59:48.544 -07 000000467 INF: FPGA: Recv ZDACR 29877
17-03-18 03:59:48.554 -07 000000591 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 03:59:48.554 -07 000000591 INF: Z Motor: MoveAbsStepped took 48 ms (did NOT wait for settling yet))
17-03-18 03:59:48.714 -07 000000591 INF: FPGA: Recv FOCMRRFOC
17-03-18 03:59:48.714 -07 000000012 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 193 ms to get response, and 212 ms overall
17-03-18 03:59:48.814 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 395 ms.
17-03-18 03:59:48.814 -07 000000625 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 399 ms.
17-03-18 03:59:48.814 -07 000000625 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 03:59:48.824 -07 000000625 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:59:48.824 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 03:59:48.824 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:59:48.824 -07 000000625 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 03:59:48.824 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 03:59:48.824 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 524 ms.
17-03-18 03:59:48.834 -07 000000625 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-18 03:59:48.904 -07 000000591 INF: FPGA: Recv YMVTILE
17-03-18 03:59:48.904 -07 000000479 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 391 ms overall
17-03-18 03:59:48.954 -07 000000479 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:59:48.954 -07 000000012 INF: FPGA: Recv YRDPOS 136272
17-03-18 03:59:48.964 -07 000000479 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 03:59:48.964 -07 000000479 INF: Y Motor: Encoder = 136272 = motor step 106462.5 = 66.5391 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:59:48.964 -07 000000479 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-18 03:59:48.964 -07 000000479 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 391 ms, distance = 0.839 mm, average velocity = 2.145 mm/sec
17-03-18 03:59:49.914 -07 000000479 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:59:49.914 -07 000000591 INF: FPGA: Recv YRDPOS 136272
17-03-18 03:59:49.924 -07 000000479 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:59:49.924 -07 000000479 INF: Y Motor: Encoder = 136272 = motor step 106462.5 = 66.5391 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:59:49.954 -07 000000479 INF: Y Motor: After move to 66.552605, error = -0.013542, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 03:59:49.954 -07 000000479 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 03:59:49.954 -07 000000479 INF: Y Motor: Moved to 66.5391 after 1450 ms (table move)
17-03-18 03:59:49.954 -07 000000424 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136768 mm (DAC = 29877)
17-03-18 03:59:49.954 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:49.954 -07 000000447 INF: FPGA: Recv ZSGSRD 30585
17-03-18 03:59:49.964 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 03:59:49.964 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:49.964 -07 000000479 INF: FPGA: Recv ZSGSRD 30575
17-03-18 03:59:49.974 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 03:59:49.974 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:49.974 -07 000000625 INF: FPGA: Recv ZSGSRD 30581
17-03-18 03:59:49.984 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:49.984 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:49.984 -07 000000479 INF: FPGA: Recv ZSGSRD 30587
17-03-18 03:59:49.994 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:49.994 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:49.994 -07 000000625 INF: FPGA: Recv ZSGSRD 30579
17-03-18 03:59:50.004 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:50.004 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:50.004 -07 000000467 INF: FPGA: Recv ZSGSRD 30573
17-03-18 03:59:50.014 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:50.014 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:50.014 -07 000000012 INF: FPGA: Recv ZSGSRD 30581
17-03-18 03:59:50.024 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:50.024 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:50.024 -07 000000479 INF: FPGA: Recv ZSGSRD 30580
17-03-18 03:59:50.034 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:50.034 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:50.034 -07 000000625 INF: FPGA: Recv ZSGSRD 30575
17-03-18 03:59:50.044 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:50.044 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:50.044 -07 000000479 INF: FPGA: Recv ZSGSRD 30583
17-03-18 03:59:50.054 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:50.054 -07 000000424 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:59:50.054 -07 000000625 INF: FPGA: Recv ZPIEZORD 26330
17-03-18 03:59:50.064 -07 000000424 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:50.064 -07 000000424 INF: Z Motor: Piezo is near 36.2 V (nominally 0 to 100 V), expect near 45.6 V, since DAC is at 4.559 V. Piezo Error = -9.3 V.
17-03-18 03:59:50.064 -07 000000424 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.8 um, Read 10 ADC samples: Avg = 30580 (-136.0 uncal um), Error = 0.8 uncal um, Median = 30580 (-136.0 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 30573 (-135.9 uncal um), Max = 30587 (-136.0 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 03:59:50.064 -07 000000424 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30580, posNoise = 7, negNoise = 7
17-03-18 03:59:50.064 -07 000000424 INF: Z Motor: After move to -0.136768, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:59:50.064 -07 000000424 INF: Z Motor: Settle wait time = 1452 ms, measure time = 106 ms (allowed 150 ms), total time = 1558 ms
17-03-18 03:59:50.064 -07 000000424 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-18 03:59:50.114 -07 000000424 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1612 ms
17-03-18 03:59:50.114 -07 000000424 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 03:59:50.114 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:59:50.114 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:59:50.114 -07 000000479 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:59:50.114 -07 000000467 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:59:50.114 -07 000000012 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 03:59:50.114 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:59:50.114 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 03:59:50.124 -07 000000012 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 03:59:50.124 -07 000000012 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 03:59:50.124 -07 000000012 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 03:59:50.134 -07 000000012 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-18 03:59:50.134 -07 000000012 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 20 ms.
17-03-18 03:59:50.134 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 03:59:50.184 -07 000000591 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 03:59:50.484 -07 000000479 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 03:59:50.484 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 03:59:50.484 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 03:59:50.484 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2334002848, 0x0, 559484976) start.
17-03-18 03:59:50.524 -07 000000424 INF: FPGA: Recv @CAMSNAP 380
17-03-18 03:59:50.524 -07 000000479 INF: FPGA: Recv CAMSNAP
17-03-18 03:59:50.524 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 373 ms to get response, and 385 ms overall
17-03-18 03:59:50.604 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2334002848, 0x0, 559484976) end. Duration was 120 ms.
17-03-18 03:59:50.604 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:59:50.604 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 03:59:50.604 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 123 ms.
17-03-18 03:59:50.624 -07 000000579 INF: Autofocus start
17-03-18 03:59:50.624 -07 000000579 INF: MeasureProfile start
17-03-18 03:59:50.624 -07 000000447 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 03:59:50.624 -07 000000591 INF: FPGA: Recv FOCMRRCUR 
17-03-18 03:59:50.634 -07 000000447 INF: FPGA: 'FOCMRRCUR 80' command took 2 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 03:59:50.634 -07 000000447 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 03:59:50.634 -07 000000579 INF: MeasureProfile done
17-03-18 03:59:50.634 -07 000000579 INF: X=32  Z correction [um]=0.1299841
17-03-18 03:59:50.634 -07 000000579 INF: Autofocus finished
17-03-18 03:59:50.834 -07 000000625 INF: FPGA: Recv FOCMRRIMG
17-03-18 03:59:50.834 -07 000000447 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 03:59:50.834 -07 000000610 INF: ------------ Scan Snapping tile 9 at Y-position 66.5390625, Z-position -0.136775759306185. ----------
17-03-18 03:59:50.834 -07 000000610 INF: Cycle	119	Tile	9	Exposure Settings		A	413	G	199	T	199	C	413
17-03-18 03:59:50.844 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28418, sync = True, waitForSettling = True)
17-03-18 03:59:50.844 -07 000000610 INF: Z Motor: Moving to -0.130089 mm, started at -0.136776 mm, distance = 6.69 um
17-03-18 03:59:50.844 -07 000000610 INF: FPGA: Xmit ZDACW 28418\n [Z Motor]
17-03-18 03:59:50.844 -07 000000479 INF: FPGA: Recv ZDACW
17-03-18 03:59:50.854 -07 000000610 INF: FPGA: 'ZDACW 28418' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 03:59:50.854 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:59:50.854 -07 000000424 INF: FPGA: Recv ZDACR 28418
17-03-18 03:59:50.864 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:50.864 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 03:59:50.994 -07 000000467 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 119, FrontChillerTemperature: 4.007176,
17-03-18 03:59:51.014 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:51.014 -07 000000424 INF: FPGA: Recv ZSGSRD 29540
17-03-18 03:59:51.024 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:51.044 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:51.044 -07 000000591 INF: FPGA: Recv ZSGSRD 29538
17-03-18 03:59:51.054 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 03:59:51.054 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:51.054 -07 000000424 INF: FPGA: Recv ZSGSRD 29544
17-03-18 03:59:51.064 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:51.064 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:51.064 -07 000000467 INF: FPGA: Recv ZSGSRD 29535
17-03-18 03:59:51.074 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:51.074 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:51.074 -07 000000579 INF: FPGA: Recv ZSGSRD 29540
17-03-18 03:59:51.084 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:51.084 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:51.084 -07 000000591 INF: FPGA: Recv ZSGSRD 29541
17-03-18 03:59:51.094 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:51.094 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:51.094 -07 000000462 INF: FPGA: Recv ZSGSRD 29540
17-03-18 03:59:51.104 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:51.104 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:51.104 -07 000000447 INF: FPGA: Recv ZSGSRD 29542
17-03-18 03:59:51.114 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:51.114 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:51.114 -07 000000012 INF: FPGA: Recv ZSGSRD 29539
17-03-18 03:59:51.124 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:51.124 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:51.124 -07 000000012 INF: FPGA: Recv ZSGSRD 29538
17-03-18 03:59:51.134 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:51.134 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:59:51.134 -07 000000625 INF: FPGA: Recv ZPIEZORD 24984
17-03-18 03:59:51.144 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:51.144 -07 000000610 INF: Z Motor: Piezo is near 33.4 V (nominally 0 to 100 V), expect near 43.4 V, since DAC is at 4.336 V. Piezo Error = -10.0 V.
17-03-18 03:59:51.144 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.1 um, Read 10 ADC samples: Avg = 29540 (-129.3 uncal um), Error = 0.8 uncal um, Median = 29540 (-129.3 uncal um), StdDev = 2 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29535 (-129.3 uncal um), Max = 29544 (-129.3 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 03:59:51.144 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29540, posNoise = 4, negNoise = 5
17-03-18 03:59:51.144 -07 000000610 INF: Z Motor: After move to -0.130089, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:59:51.144 -07 000000610 INF: Z Motor: MoveAbsStepped took 298 ms)
17-03-18 03:59:51.144 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:59:51.144 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:59:51.144 -07 000000012 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:59:51.144 -07 000000579 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:59:51.144 -07 000000591 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 03:59:51.144 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:59:51.144 -07 000000479 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 03:59:51.144 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 03:59:51.144 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 03:59:51.144 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 03:59:51.144 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 03:59:51.144 -07 000000479 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 03:59:51.154 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 03:59:51.154 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 03:59:51.154 -07 000000479 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 03:59:51.154 -07 000000479 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 03:59:51.164 -07 000000479 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 03:59:51.164 -07 000000479 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 03:59:51.164 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 03:59:51.164 -07 000000591 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 03:59:51.164 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 413 413 199 199 28594 150\n [Camera]
17-03-18 03:59:51.364 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 03:59:51.624 -07 000000625 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 03:59:51.624 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 118. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1701, R2=1769, Total=3470. Warn if over 250 bubbles per interval.
17-03-18 03:59:51.774 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 605
17-03-18 03:59:51.774 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 605
17-03-18 03:59:51.774 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:59:51.774 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:59:51.774 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 03:59:51.774 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 605
17-03-18 03:59:51.774 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 605
17-03-18 03:59:51.774 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:59:51.784 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:59:51.784 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start.
17-03-18 03:59:51.964 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28594 798
17-03-18 03:59:52.114 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning grn on 948
17-03-18 03:59:52.154 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 370 ms.
17-03-18 03:59:52.154 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 371 ms.
17-03-18 03:59:52.154 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:59:52.264 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 487 ms.
17-03-18 03:59:52.264 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 487 ms.
17-03-18 03:59:52.264 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:59:52.274 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 119 ms.
17-03-18 03:59:52.274 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 03:59:52.274 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 493 ms.
17-03-18 03:59:52.274 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 498 ms.
17-03-18 03:59:52.314 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1147
17-03-18 03:59:52.314 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1147
17-03-18 03:59:52.314 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:59:52.324 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1147
17-03-18 03:59:52.324 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1147
17-03-18 03:59:52.324 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:59:52.324 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:59:52.334 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-18 03:59:52.334 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:59:52.334 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 2334002848, 0x0, 418435064) start.
17-03-18 03:59:52.504 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP 1340
17-03-18 03:59:52.504 -07 000000447 INF: FPGA: Recv CAMDBLSNAP
17-03-18 03:59:52.504 -07 000000610 INF: FPGA: 'CAMDBLSNAP 413 413 199 199 28594 150' command took 2 ms to send, 1339 ms to get response, and 1346 ms overall
17-03-18 03:59:52.514 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 03:59:52.514 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 10 at Y-position 66.5390625, Z-Position -0.130094578678754. ------
17-03-18 03:59:52.514 -07 000000579 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 03:59:52.514 -07 000000479 INF: Y Motor: MoveYZ optimized starting. Moving Y to 67.3826 mm, moving Z to -0.13699 mm
17-03-18 03:59:52.514 -07 000000479 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 03:59:52.524 -07 000000437 INF: FPGA: Recv FOCMRRCUR 
17-03-18 03:59:52.524 -07 000000579 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 03:59:52.524 -07 000000579 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 03:59:52.524 -07 000000012 INF: Y Motor: Entering MoveAbsStepped (target = 107812 steps, sync = True, waitForSettling = True)
17-03-18 03:59:52.524 -07 000000447 INF: Z Motor: Entering MoveAbsStepped (DAC = 29925, sync = True, waitForSettling = False)
17-03-18 03:59:52.524 -07 000000447 INF: Z Motor: Moving to -0.136988 mm, started at -0.130095 mm, distance = -6.89 um
17-03-18 03:59:52.524 -07 000000012 INF: Y Motor: Moving to 67.3826 mm, started at 66.5391 mm, delta = 0.8435 mm
17-03-18 03:59:52.534 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:59:52.534 -07 000000512 INF: FPGA: Recv YRDPOS 136272
17-03-18 03:59:52.544 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-18 03:59:52.544 -07 000000012 INF: Y Motor: Encoder = 136272 = motor step 106462.5 = 66.5391 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:59:52.544 -07 000000012 INF: Y Motor: Last commanded position = 66.5526 mm (106484.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 03:59:52.544 -07 000000012 INF: Y Motor: Moving 1350 steps-28
17-03-18 03:59:52.544 -07 000000447 INF: FPGA: Xmit ZDACW 29925\n [Z Motor]
17-03-18 03:59:52.544 -07 000000591 INF: FPGA: Recv ZDACW
17-03-18 03:59:52.554 -07 000000447 INF: FPGA: 'ZDACW 29925' command took 1 ms to send, 0 ms to get response, and 28 ms overall
17-03-18 03:59:52.554 -07 000000447 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:59:52.564 -07 000000012 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 03:59:52.724 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 394 ms.
17-03-18 03:59:52.724 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 2334002848, 0x0, 418435064) end. Duration was 393 ms.
17-03-18 03:59:52.724 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 03:59:52.724 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:59:52.734 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-18 03:59:52.734 -07 000000625 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:59:52.734 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 03:59:52.734 -07 000000625 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 03:59:52.734 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 416 ms.
17-03-18 03:59:52.744 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 419 ms.
17-03-18 03:59:52.744 -07 000000480 INF: FPGA: Recv ZDACR 29925
17-03-18 03:59:52.744 -07 000000480 INF: FPGA: Recv FOCMRRFOC
17-03-18 03:59:52.744 -07 000000447 INF: FPGA: 'ZDACR' command took 0 ms to send, 184 ms to get response, and 194 ms overall
17-03-18 03:59:52.744 -07 000000447 INF: Z Motor: MoveAbsStepped took 223 ms (did NOT wait for settling yet))
17-03-18 03:59:52.744 -07 000000579 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 214 ms to get response, and 223 ms overall
17-03-18 03:59:52.934 -07 000000447 INF: FPGA: Recv YMVTILE
17-03-18 03:59:52.934 -07 000000012 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 03:59:52.984 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:59:52.984 -07 000000447 INF: FPGA: Recv YRDPOS 137977
17-03-18 03:59:52.994 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 03:59:52.994 -07 000000012 INF: Y Motor: Encoder = 137977 = motor step 107794.5 = 67.3716 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:59:52.994 -07 000000012 INF: Y Motor: Position error before settling (table move) = -23 encoder counts (-0.011 mm)
17-03-18 03:59:52.994 -07 000000012 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.844 mm, average velocity = 2.125 mm/sec
17-03-18 03:59:53.944 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:59:53.944 -07 000000447 INF: FPGA: Recv YRDPOS 137978
17-03-18 03:59:53.954 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:59:53.954 -07 000000012 INF: Y Motor: Encoder = 137978 = motor step 107795.3 = 67.3721 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:59:53.984 -07 000000012 INF: Y Motor: After move to 67.382607, error = -0.010536, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 03:59:53.984 -07 000000012 INF: Y Motor: Position error after settling (table move) = -22 encoder counts (-0.011 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 03:59:53.984 -07 000000012 INF: Y Motor: Moved to 67.3721 after 1459 ms (table move)
17-03-18 03:59:53.984 -07 000000479 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136988 mm (DAC = 29925)
17-03-18 03:59:53.984 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:53.984 -07 000000012 INF: FPGA: Recv ZSGSRD 30621
17-03-18 03:59:53.994 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 03:59:53.994 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:53.994 -07 000000447 INF: FPGA: Recv ZSGSRD 30613
17-03-18 03:59:54.004 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:54.004 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:54.004 -07 000000012 INF: FPGA: Recv ZSGSRD 30609
17-03-18 03:59:54.014 -07 000000479 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:54.014 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:54.014 -07 000000480 INF: FPGA: Recv ZSGSRD 30620
17-03-18 03:59:54.024 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:54.024 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:54.024 -07 000000579 INF: FPGA: Recv ZSGSRD 30624
17-03-18 03:59:54.034 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:54.034 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:54.034 -07 000000447 INF: FPGA: Recv ZSGSRD 30616
17-03-18 03:59:54.044 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:54.044 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:54.044 -07 000000480 INF: FPGA: Recv ZSGSRD 30609
17-03-18 03:59:54.054 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:54.054 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:54.054 -07 000000447 INF: FPGA: Recv ZSGSRD 30609
17-03-18 03:59:54.064 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:54.064 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:54.064 -07 000000480 INF: FPGA: Recv ZSGSRD 30613
17-03-18 03:59:54.074 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:54.074 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:54.074 -07 000000579 INF: FPGA: Recv ZSGSRD 30611
17-03-18 03:59:54.084 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:54.084 -07 000000479 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:59:54.084 -07 000000012 INF: FPGA: Recv ZPIEZORD 26385
17-03-18 03:59:54.094 -07 000000479 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:54.094 -07 000000479 INF: Z Motor: Piezo is near 36.4 V (nominally 0 to 100 V), expect near 45.7 V, since DAC is at 4.566 V. Piezo Error = -9.3 V.
17-03-18 03:59:54.094 -07 000000479 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.0 um, Read 10 ADC samples: Avg = 30614 (-136.2 uncal um), Error = 0.8 uncal um, Median = 30613 (-136.2 uncal um), StdDev = 6 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 30609 (-136.2 uncal um), Max = 30624 (-136.3 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 03:59:54.094 -07 000000479 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30614, posNoise = 10, negNoise = 5
17-03-18 03:59:54.094 -07 000000479 INF: Z Motor: After move to -0.136988, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:59:54.094 -07 000000479 INF: Z Motor: Settle wait time = 1462 ms, measure time = 107 ms (allowed 150 ms), total time = 1569 ms
17-03-18 03:59:54.094 -07 000000479 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-18 03:59:54.144 -07 000000479 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1624 ms
17-03-18 03:59:54.144 -07 000000479 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 03:59:54.144 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:59:54.144 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:59:54.144 -07 000000467 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:59:54.144 -07 000000012 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:59:54.144 -07 000000479 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 03:59:54.144 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:59:54.144 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 03:59:54.144 -07 000000479 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 03:59:54.154 -07 000000479 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 03:59:54.154 -07 000000479 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 03:59:54.164 -07 000000479 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-18 03:59:54.164 -07 000000479 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-18 03:59:54.164 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 03:59:54.214 -07 000000579 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 03:59:54.504 -07 000000480 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 03:59:54.514 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 03:59:54.514 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 03:59:54.514 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 579324120, 0x0, 559484976) start.
17-03-18 03:59:54.544 -07 000000480 INF: FPGA: Recv @CAMSNAP 380
17-03-18 03:59:54.554 -07 000000467 INF: FPGA: Recv CAMSNAP
17-03-18 03:59:54.554 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 380 ms to get response, and 385 ms overall
17-03-18 03:59:54.634 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 579324120, 0x0, 559484976) end. Duration was 127 ms.
17-03-18 03:59:54.634 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:59:54.644 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 03:59:54.644 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 130 ms.
17-03-18 03:59:54.654 -07 000000480 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 03:59:54.654 -07 000000479 INF: Autofocus start
17-03-18 03:59:54.654 -07 000000479 INF: MeasureProfile start
17-03-18 03:59:54.654 -07 000000579 INF: FPGA: Recv FOCMRRCUR 
17-03-18 03:59:54.664 -07 000000480 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 03:59:54.664 -07 000000480 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 03:59:54.664 -07 000000479 INF: MeasureProfile done
17-03-18 03:59:54.664 -07 000000479 INF: X=-16  Z correction [um]=-0.08128808
17-03-18 03:59:54.664 -07 000000479 INF: Autofocus finished
17-03-18 03:59:54.864 -07 000000467 INF: FPGA: Recv FOCMRRIMG
17-03-18 03:59:54.864 -07 000000480 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 03:59:54.864 -07 000000610 INF: ------------ Scan Snapping tile 10 at Y-position 67.3720703125, Z-position -0.136994182519005. ----------
17-03-18 03:59:54.864 -07 000000610 INF: Cycle	119	Tile	10	Exposure Settings		A	413	G	199	T	199	C	413
17-03-18 03:59:54.874 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28419, sync = True, waitForSettling = True)
17-03-18 03:59:54.874 -07 000000610 INF: Z Motor: Moving to -0.130094 mm, started at -0.136994 mm, distance = 6.90 um
17-03-18 03:59:54.874 -07 000000610 INF: FPGA: Xmit ZDACW 28419\n [Z Motor]
17-03-18 03:59:54.874 -07 000000480 INF: FPGA: Recv ZDACW
17-03-18 03:59:54.884 -07 000000610 INF: FPGA: 'ZDACW 28419' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 03:59:54.884 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:59:54.884 -07 000000579 INF: FPGA: Recv ZDACR 28419
17-03-18 03:59:54.894 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:54.894 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 03:59:55.044 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:55.044 -07 000000467 INF: FPGA: Recv ZSGSRD 29539
17-03-18 03:59:55.054 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:59:55.054 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:55.054 -07 000000480 INF: FPGA: Recv ZSGSRD 29540
17-03-18 03:59:55.064 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:55.064 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:55.064 -07 000000467 INF: FPGA: Recv ZSGSRD 29540
17-03-18 03:59:55.074 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:55.074 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:55.074 -07 000000579 INF: FPGA: Recv ZSGSRD 29538
17-03-18 03:59:55.084 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:55.084 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:55.084 -07 000000447 INF: FPGA: Recv ZSGSRD 29540
17-03-18 03:59:55.094 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:55.094 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:55.094 -07 000000479 INF: FPGA: Recv ZSGSRD 29542
17-03-18 03:59:55.104 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:55.104 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:55.104 -07 000000579 INF: FPGA: Recv ZSGSRD 29542
17-03-18 03:59:55.114 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:55.114 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:55.114 -07 000000480 INF: FPGA: Recv ZSGSRD 29539
17-03-18 03:59:55.124 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:55.124 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:55.124 -07 000000467 INF: FPGA: Recv ZSGSRD 29539
17-03-18 03:59:55.134 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:55.134 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:55.134 -07 000000012 INF: FPGA: Recv ZSGSRD 29540
17-03-18 03:59:55.144 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:55.144 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:59:55.144 -07 000000467 INF: FPGA: Recv ZPIEZORD 24983
17-03-18 03:59:55.154 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:55.154 -07 000000610 INF: Z Motor: Piezo is near 33.4 V (nominally 0 to 100 V), expect near 43.4 V, since DAC is at 4.336 V. Piezo Error = -10.0 V.
17-03-18 03:59:55.154 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.1 um, Read 10 ADC samples: Avg = 29540 (-129.3 uncal um), Error = 0.8 uncal um, Median = 29540 (-129.3 uncal um), StdDev = 1 (0.0 uncal um), Range = 4 (0.0 uncal um), Min = 29538 (-129.3 uncal um), Max = 29542 (-129.3 uncal um), Pos Noise = 2 (0.0 uncal um), Neg Noise = 2 (0.0 uncal um)
17-03-18 03:59:55.154 -07 000000610 INF: Z Motor: ADC noise = 2, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29540, posNoise = 2, negNoise = 2
17-03-18 03:59:55.154 -07 000000610 INF: Z Motor: After move to -0.130094, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:59:55.154 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 03:59:55.154 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:59:55.154 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:59:55.154 -07 000000447 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:59:55.154 -07 000000012 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:59:55.154 -07 000000467 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 03:59:55.154 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:59:55.154 -07 000000479 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 03:59:55.154 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 03:59:55.154 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 03:59:55.154 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 03:59:55.154 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 3 ms.
17-03-18 03:59:55.154 -07 000000479 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 03:59:55.164 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 03:59:55.164 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 03:59:55.164 -07 000000479 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 03:59:55.164 -07 000000479 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 03:59:55.164 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 03:59:55.164 -07 000000467 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 03:59:55.174 -07 000000479 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 03:59:55.174 -07 000000479 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 03:59:55.174 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 413 413 199 199 28596 150\n [Camera]
17-03-18 03:59:55.374 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 03:59:55.784 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 605
17-03-18 03:59:55.784 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 605
17-03-18 03:59:55.784 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:59:55.784 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:59:55.784 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 644204472, 0x0, 391868352) start.
17-03-18 03:59:55.784 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 605
17-03-18 03:59:55.784 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 605
17-03-18 03:59:55.784 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:59:55.784 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:59:55.784 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) start.
17-03-18 03:59:55.974 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28596 798
17-03-18 03:59:56.124 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP turning grn on 948
17-03-18 03:59:56.164 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 644204472, 0x0, 391868352) end. Duration was 379 ms.
17-03-18 03:59:56.164 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-18 03:59:56.164 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:59:56.164 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) end. Duration was 379 ms.
17-03-18 03:59:56.164 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-18 03:59:56.164 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:59:56.174 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 03:59:56.174 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-18 03:59:56.174 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 03:59:56.184 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-18 03:59:56.324 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1147
17-03-18 03:59:56.324 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1147
17-03-18 03:59:56.324 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:59:56.324 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:59:56.324 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 03:59:56.334 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1147
17-03-18 03:59:56.334 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1147
17-03-18 03:59:56.334 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:59:56.334 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:59:56.334 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-18 03:59:56.364 -07 000000480 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 119, FrontChillerTemperature: 4.005817,
17-03-18 03:59:56.514 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP 1340
17-03-18 03:59:56.514 -07 000000579 INF: FPGA: Recv CAMDBLSNAP
17-03-18 03:59:56.514 -07 000000610 INF: FPGA: 'CAMDBLSNAP 413 413 199 199 28596 150' command took 2 ms to send, 1339 ms to get response, and 1346 ms overall
17-03-18 03:59:56.524 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 03:59:56.524 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 11 at Y-position 67.3720703125, Z-Position -0.130094578678754. ------
17-03-18 03:59:56.524 -07 000000447 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 03:59:56.524 -07 000000608 INF: Y Motor: MoveYZ optimized starting. Moving Y to 68.2126 mm, moving Z to -0.13648 mm
17-03-18 03:59:56.524 -07 000000608 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 03:59:56.524 -07 000000012 INF: Y Motor: Entering MoveAbsStepped (target = 109140 steps, sync = True, waitForSettling = True)
17-03-18 03:59:56.534 -07 000000579 INF: Z Motor: Entering MoveAbsStepped (DAC = 29815, sync = True, waitForSettling = False)
17-03-18 03:59:56.534 -07 000000579 INF: Z Motor: Moving to -0.136484 mm, started at -0.130095 mm, distance = -6.39 um
17-03-18 03:59:56.534 -07 000000012 INF: Y Motor: Moving to 68.2126 mm, started at 67.3721 mm, delta = 0.8405 mm
17-03-18 03:59:56.534 -07 000000480 INF: FPGA: Recv FOCMRRCUR 
17-03-18 03:59:56.534 -07 000000447 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 7 ms overall
17-03-18 03:59:56.534 -07 000000579 INF: FPGA: Xmit ZDACW 29815\n [Z Motor]
17-03-18 03:59:56.534 -07 000000512 INF: FPGA: Recv ZDACW
17-03-18 03:59:56.544 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:59:56.544 -07 000000579 INF: FPGA: 'ZDACW 29815' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:56.544 -07 000000625 INF: FPGA: Recv YRDPOS 137978
17-03-18 03:59:56.554 -07 000000447 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 03:59:56.554 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 03:59:56.554 -07 000000012 INF: Y Motor: Encoder = 137978 = motor step 107795.3 = 67.3721 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:59:56.554 -07 000000012 INF: Y Motor: Last commanded position = 67.3826 mm (107812.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 03:59:56.554 -07 000000012 INF: Y Motor: Moving 1345 steps-23
17-03-18 03:59:56.564 -07 000000579 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:59:56.564 -07 000000479 INF: FPGA: Recv ZDACR 29815
17-03-18 03:59:56.574 -07 000000012 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 03:59:56.574 -07 000000579 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 03:59:56.574 -07 000000579 INF: Z Motor: MoveAbsStepped took 39 ms (did NOT wait for settling yet))
17-03-18 03:59:56.624 -07 000000579 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 03:59:56.624 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 118. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1701, R2=1769, Total=3470. Warn if over 250 bubbles per interval.
17-03-18 03:59:56.714 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 390 ms.
17-03-18 03:59:56.714 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-18 03:59:56.714 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:59:56.724 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 388 ms.
17-03-18 03:59:56.724 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-18 03:59:56.724 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:59:56.724 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 03:59:56.724 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 03:59:56.724 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 03:59:56.734 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 03:59:56.754 -07 000000480 INF: FPGA: Recv FOCMRRFOC
17-03-18 03:59:56.754 -07 000000447 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 220 ms overall
17-03-18 03:59:56.944 -07 000000512 INF: FPGA: Recv YMVTILE
17-03-18 03:59:56.944 -07 000000012 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 369 ms to get response, and 398 ms overall
17-03-18 03:59:56.994 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:59:57.004 -07 000000579 INF: FPGA: Recv YRDPOS 139684
17-03-18 03:59:57.014 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:59:57.014 -07 000000012 INF: Y Motor: Encoder = 139684 = motor step 109128.1 = 68.2051 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:59:57.014 -07 000000012 INF: Y Motor: Position error before settling (table move) = -15 encoder counts (-0.007 mm)
17-03-18 03:59:57.014 -07 000000012 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 399 ms, distance = 0.841 mm, average velocity = 2.107 mm/sec
17-03-18 03:59:57.964 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:59:57.964 -07 000000467 INF: FPGA: Recv YRDPOS 139685
17-03-18 03:59:57.974 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:59:57.974 -07 000000012 INF: Y Motor: Encoder = 139685 = motor step 109128.9 = 68.2056 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:59:57.994 -07 000000012 INF: Y Motor: After move to 68.212608, error = -0.007042, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 03:59:57.994 -07 000000012 INF: Y Motor: Position error after settling (table move) = -14 encoder counts (-0.007 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 03:59:57.994 -07 000000012 INF: Y Motor: Moved to 68.2056 after 1468 ms (table move)
17-03-18 03:59:58.004 -07 000000608 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136484 mm (DAC = 29815)
17-03-18 03:59:58.004 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:58.004 -07 000000447 INF: FPGA: Recv ZSGSRD 30537
17-03-18 03:59:58.014 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 03:59:58.014 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:58.014 -07 000000480 INF: FPGA: Recv ZSGSRD 30545
17-03-18 03:59:58.024 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 03:59:58.024 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:58.024 -07 000000502 INF: FPGA: Recv ZSGSRD 30527
17-03-18 03:59:58.034 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:58.034 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:58.034 -07 000000480 INF: FPGA: Recv ZSGSRD 30529
17-03-18 03:59:58.044 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:58.044 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:58.044 -07 000000618 INF: FPGA: Recv ZSGSRD 30529
17-03-18 03:59:58.054 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:58.054 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:58.054 -07 000000502 INF: FPGA: Recv ZSGSRD 30540
17-03-18 03:59:58.064 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:58.064 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:58.064 -07 000000618 INF: FPGA: Recv ZSGSRD 30542
17-03-18 03:59:58.074 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:58.074 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:58.074 -07 000000447 INF: FPGA: Recv ZSGSRD 30529
17-03-18 03:59:58.084 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:58.084 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:58.084 -07 000000625 INF: FPGA: Recv ZSGSRD 30535
17-03-18 03:59:58.094 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:58.094 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:58.094 -07 000000467 INF: FPGA: Recv ZSGSRD 30533
17-03-18 03:59:58.104 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:58.104 -07 000000608 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:59:58.104 -07 000000467 INF: FPGA: Recv ZPIEZORD 26279
17-03-18 03:59:58.114 -07 000000608 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:58.114 -07 000000608 INF: Z Motor: Piezo is near 36.1 V (nominally 0 to 100 V), expect near 45.5 V, since DAC is at 4.549 V. Piezo Error = -9.4 V.
17-03-18 03:59:58.114 -07 000000608 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.5 um, Read 10 ADC samples: Avg = 30535 (-135.7 uncal um), Error = 0.8 uncal um, Median = 30534 (-135.7 uncal um), StdDev = 6 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 30527 (-135.6 uncal um), Max = 30545 (-135.8 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 03:59:58.114 -07 000000608 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30535, posNoise = 10, negNoise = 8
17-03-18 03:59:58.114 -07 000000608 INF: Z Motor: After move to -0.136484, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:59:58.114 -07 000000608 INF: Z Motor: Settle wait time = 1471 ms, measure time = 108 ms (allowed 150 ms), total time = 1579 ms
17-03-18 03:59:58.114 -07 000000608 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-18 03:59:58.164 -07 000000608 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1635 ms
17-03-18 03:59:58.164 -07 000000608 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 03:59:58.164 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:59:58.164 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:59:58.164 -07 000000447 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:59:58.164 -07 000000467 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:59:58.164 -07 000000608 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 03:59:58.164 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:59:58.164 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 03:59:58.164 -07 000000608 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 03:59:58.174 -07 000000608 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 03:59:58.174 -07 000000608 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 03:59:58.184 -07 000000608 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-18 03:59:58.184 -07 000000608 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-18 03:59:58.184 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 03:59:58.224 -07 000000561 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 03:59:58.524 -07 000000467 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 03:59:58.524 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 03:59:58.524 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 03:59:58.524 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 679626736, 0x0, 559484976) start.
17-03-18 03:59:58.564 -07 000000625 INF: FPGA: Recv @CAMSNAP 380
17-03-18 03:59:58.564 -07 000000561 INF: FPGA: Recv CAMSNAP
17-03-18 03:59:58.564 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 379 ms to get response, and 385 ms overall
17-03-18 03:59:58.654 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 679626736, 0x0, 559484976) end. Duration was 126 ms.
17-03-18 03:59:58.654 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:59:58.654 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 03:59:58.654 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms.
17-03-18 03:59:58.784 -07 000000625 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 03:59:58.784 -07 000000447 INF: Autofocus start
17-03-18 03:59:58.784 -07 000000447 INF: MeasureProfile start
17-03-18 03:59:58.784 -07 000000608 INF: FPGA: Recv FOCMRRCUR 
17-03-18 03:59:58.794 -07 000000625 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:59:58.794 -07 000000625 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 03:59:58.794 -07 000000447 INF: MeasureProfile done
17-03-18 03:59:58.794 -07 000000447 INF: X=0  Z correction [um]=-0.02394831
17-03-18 03:59:58.794 -07 000000447 INF: Autofocus finished
17-03-18 03:59:58.994 -07 000000561 INF: FPGA: Recv FOCMRRIMG
17-03-18 03:59:58.994 -07 000000625 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 03:59:58.994 -07 000000610 INF: ------------ Scan Snapping tile 11 at Y-position 68.20556640625, Z-position -0.136486669759806. ----------
17-03-18 03:59:58.994 -07 000000610 INF: Cycle	119	Tile	11	Exposure Settings		A	413	G	199	T	199	C	413
17-03-18 03:59:59.004 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28322, sync = True, waitForSettling = True)
17-03-18 03:59:59.004 -07 000000610 INF: Z Motor: Moving to -0.129650 mm, started at -0.136487 mm, distance = 6.84 um
17-03-18 03:59:59.004 -07 000000610 INF: FPGA: Xmit ZDACW 28322\n [Z Motor]
17-03-18 03:59:59.004 -07 000000608 INF: FPGA: Recv ZDACW
17-03-18 03:59:59.014 -07 000000610 INF: FPGA: 'ZDACW 28322' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 03:59:59.014 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:59:59.014 -07 000000561 INF: FPGA: Recv ZDACR 28322
17-03-18 03:59:59.024 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:59.024 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 03:59:59.174 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:59.174 -07 000000608 INF: FPGA: Recv ZSGSRD 29471
17-03-18 03:59:59.184 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:59.184 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:59.184 -07 000000561 INF: FPGA: Recv ZSGSRD 29477
17-03-18 03:59:59.194 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:59.194 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:59.194 -07 000000608 INF: FPGA: Recv ZSGSRD 29467
17-03-18 03:59:59.204 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:59.204 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:59.204 -07 000000625 INF: FPGA: Recv ZSGSRD 29465
17-03-18 03:59:59.214 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:59.214 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:59.214 -07 000000447 INF: FPGA: Recv ZSGSRD 29471
17-03-18 03:59:59.224 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:59.224 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:59.224 -07 000000625 INF: FPGA: Recv ZSGSRD 29471
17-03-18 03:59:59.234 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:59.234 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:59.234 -07 000000447 INF: FPGA: Recv ZSGSRD 29477
17-03-18 03:59:59.244 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:59.244 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:59.244 -07 000000462 INF: FPGA: Recv ZSGSRD 29467
17-03-18 03:59:59.254 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:59.254 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:59.254 -07 000000467 INF: FPGA: Recv ZSGSRD 29472
17-03-18 03:59:59.264 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:59.264 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:59:59.264 -07 000000447 INF: FPGA: Recv ZSGSRD 29475
17-03-18 03:59:59.274 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:59.274 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:59:59.274 -07 000000467 INF: FPGA: Recv ZPIEZORD 24893
17-03-18 03:59:59.284 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:59:59.284 -07 000000610 INF: Z Motor: Piezo is near 33.2 V (nominally 0 to 100 V), expect near 43.2 V, since DAC is at 4.322 V. Piezo Error = -10.0 V.
17-03-18 03:59:59.284 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.6 um, Read 10 ADC samples: Avg = 29471 (-128.9 uncal um), Error = 0.8 uncal um, Median = 29471 (-128.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29465 (-128.8 uncal um), Max = 29477 (-128.9 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 03:59:59.284 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29471, posNoise = 6, negNoise = 6
17-03-18 03:59:59.284 -07 000000610 INF: Z Motor: After move to -0.129650, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:59:59.284 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 03:59:59.284 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:59:59.284 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:59:59.284 -07 000000625 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:59:59.284 -07 000000447 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:59:59.284 -07 000000467 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 03:59:59.284 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:59:59.284 -07 000000608 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 03:59:59.284 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 03:59:59.284 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 03:59:59.284 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 03:59:59.284 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 03:59:59.284 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 03:59:59.294 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 03:59:59.294 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 03:59:59.294 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 03:59:59.294 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 03:59:59.304 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 03:59:59.304 -07 000000467 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 03:59:59.304 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-18 03:59:59.304 -07 000000608 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 03:59:59.304 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 413 413 199 199 28499 150\n [Camera]
17-03-18 03:59:59.504 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 03:59:59.914 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 605
17-03-18 03:59:59.914 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 605
17-03-18 03:59:59.914 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:59:59.914 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:59:59.924 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-18 03:59:59.924 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 605
17-03-18 03:59:59.924 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 605
17-03-18 03:59:59.924 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:59:59.924 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:59:59.924 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 04:00:00.114 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28499 798
17-03-18 04:00:00.264 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning grn on 948
17-03-18 04:00:00.304 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 380 ms.
17-03-18 04:00:00.304 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-18 04:00:00.304 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:00:00.304 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 378 ms.
17-03-18 04:00:00.304 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-18 04:00:00.304 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:00:00.304 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 04:00:00.304 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-18 04:00:00.304 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 04:00:00.314 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-18 04:00:00.464 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1147
17-03-18 04:00:00.464 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1147
17-03-18 04:00:00.464 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:00:00.464 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:00:00.464 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-18 04:00:00.464 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1147
17-03-18 04:00:00.464 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1147
17-03-18 04:00:00.464 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:00:00.464 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:00:00.464 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) start.
17-03-18 04:00:00.654 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP 1340
17-03-18 04:00:00.654 -07 000000591 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:00:00.654 -07 000000610 INF: FPGA: 'CAMDBLSNAP 413 413 199 199 28499 150' command took 2 ms to send, 1342 ms to get response, and 1347 ms overall
17-03-18 04:00:00.654 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 04:00:00.654 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 12 at Y-position 68.20556640625, Z-Position -0.129651308040972. ------
17-03-18 04:00:00.654 -07 000000462 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:00:00.654 -07 000000608 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.0426 mm, moving Z to -0.13632 mm
17-03-18 04:00:00.654 -07 000000608 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:00:00.664 -07 000000467 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:00:00.664 -07 000000462 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 04:00:00.664 -07 000000462 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:00:00.664 -07 000000447 INF: Y Motor: Entering MoveAbsStepped (target = 110468 steps, sync = True, waitForSettling = True)
17-03-18 04:00:00.664 -07 000000467 INF: Z Motor: Entering MoveAbsStepped (DAC = 29779, sync = True, waitForSettling = False)
17-03-18 04:00:00.664 -07 000000467 INF: Z Motor: Moving to -0.136320 mm, started at -0.129651 mm, distance = -6.67 um
17-03-18 04:00:00.664 -07 000000447 INF: Y Motor: Moving to 69.0426 mm, started at 68.2056 mm, delta = 0.8370 mm
17-03-18 04:00:00.674 -07 000000447 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:00:00.674 -07 000000480 INF: FPGA: Recv YRDPOS 139685
17-03-18 04:00:00.684 -07 000000447 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-18 04:00:00.684 -07 000000447 INF: Y Motor: Encoder = 139685 = motor step 109128.9 = 68.2056 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:00:00.684 -07 000000447 INF: Y Motor: Last commanded position = 68.2126 mm (109140.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:00:00.684 -07 000000447 INF: Y Motor: Moving 1339 steps-15
17-03-18 04:00:00.684 -07 000000467 INF: FPGA: Xmit ZDACW 29779\n [Z Motor]
17-03-18 04:00:00.684 -07 000000480 INF: FPGA: Recv ZDACW
17-03-18 04:00:00.694 -07 000000447 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:00:00.694 -07 000000467 INF: FPGA: 'ZDACW 29779' command took 1 ms to send, 0 ms to get response, and 24 ms overall
17-03-18 04:00:00.704 -07 000000467 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:00:00.704 -07 000000424 INF: FPGA: Recv ZDACR 29779
17-03-18 04:00:00.714 -07 000000467 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 04:00:00.714 -07 000000467 INF: Z Motor: MoveAbsStepped took 45 ms (did NOT wait for settling yet))
17-03-18 04:00:00.844 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) end. Duration was 381 ms.
17-03-18 04:00:00.844 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-18 04:00:00.844 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:00:00.844 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 387 ms.
17-03-18 04:00:00.844 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-18 04:00:00.844 -07 000000625 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:00:00.844 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:00:00.854 -07 000000625 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 04:00:00.854 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-18 04:00:00.854 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-18 04:00:00.864 -07 000000424 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:00:00.864 -07 000000462 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:00:01.064 -07 000000424 INF: FPGA: Recv YMVTILE
17-03-18 04:00:01.064 -07 000000447 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-18 04:00:01.114 -07 000000447 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:00:01.124 -07 000000590 INF: FPGA: Recv YRDPOS 141368
17-03-18 04:00:01.124 -07 000000447 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 04:00:01.124 -07 000000447 INF: Y Motor: Encoder = 141368 = motor step 110443.8 = 69.0273 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:00:01.124 -07 000000447 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-18 04:00:01.124 -07 000000447 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 387 ms, distance = 0.837 mm, average velocity = 2.163 mm/sec
17-03-18 04:00:01.624 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:00:01.624 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 118. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1701, R2=1769, Total=3470. Warn if over 250 bubbles per interval.
17-03-18 04:00:01.724 -07 000000424 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 119, FrontChillerTemperature: 3.964938,
17-03-18 04:00:02.074 -07 000000447 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:00:02.074 -07 000000561 INF: FPGA: Recv YRDPOS 141368
17-03-18 04:00:02.084 -07 000000447 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:00:02.084 -07 000000447 INF: Y Motor: Encoder = 141368 = motor step 110443.8 = 69.0273 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:00:02.114 -07 000000447 INF: Y Motor: After move to 69.042610, error = -0.015266, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:00:02.114 -07 000000447 INF: Y Motor: Position error after settling (table move) = -31 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:00:02.114 -07 000000447 INF: Y Motor: Moved to 69.0273 after 1449 ms (table move)
17-03-18 04:00:02.114 -07 000000608 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136320 mm (DAC = 29779)
17-03-18 04:00:02.114 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:00:02.114 -07 000000437 INF: FPGA: Recv ZSGSRD 30509
17-03-18 04:00:02.124 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 04:00:02.124 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:00:02.124 -07 000000590 INF: FPGA: Recv ZSGSRD 30510
17-03-18 04:00:02.134 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:00:02.134 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:00:02.134 -07 000000467 INF: FPGA: Recv ZSGSRD 30517
17-03-18 04:00:02.144 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:00:02.144 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:00:02.144 -07 000000625 INF: FPGA: Recv ZSGSRD 30511
17-03-18 04:00:02.154 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:00:02.154 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:00:02.154 -07 000000462 INF: FPGA: Recv ZSGSRD 30513
17-03-18 04:00:02.164 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:00:02.164 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:00:02.164 -07 000000480 INF: FPGA: Recv ZSGSRD 30507
17-03-18 04:00:02.174 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:00:02.174 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:00:02.174 -07 000000437 INF: FPGA: Recv ZSGSRD 30508
17-03-18 04:00:02.184 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:00:02.184 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:00:02.184 -07 000000012 INF: FPGA: Recv ZSGSRD 30512
17-03-18 04:00:02.194 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:00:02.194 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:00:02.194 -07 000000512 INF: FPGA: Recv ZSGSRD 30502
17-03-18 04:00:02.204 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:00:02.204 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:00:02.204 -07 000000625 INF: FPGA: Recv ZSGSRD 30506
17-03-18 04:00:02.214 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:00:02.214 -07 000000608 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:00:02.214 -07 000000424 INF: FPGA: Recv ZPIEZORD 26329
17-03-18 04:00:02.224 -07 000000608 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:00:02.224 -07 000000608 INF: Z Motor: Piezo is near 36.2 V (nominally 0 to 100 V), expect near 45.4 V, since DAC is at 4.544 V. Piezo Error = -9.2 V.
17-03-18 04:00:02.224 -07 000000608 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.3 um, Read 10 ADC samples: Avg = 30510 (-135.5 uncal um), Error = 0.8 uncal um, Median = 30510 (-135.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 30502 (-135.5 uncal um), Max = 30517 (-135.6 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 04:00:02.224 -07 000000608 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30510, posNoise = 7, negNoise = 8
17-03-18 04:00:02.224 -07 000000608 INF: Z Motor: After move to -0.136320, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:00:02.224 -07 000000608 INF: Z Motor: Settle wait time = 1450 ms, measure time = 105 ms (allowed 150 ms), total time = 1555 ms
17-03-18 04:00:02.224 -07 000000608 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 04:00:02.274 -07 000000608 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1612 ms
17-03-18 04:00:02.274 -07 000000608 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:00:02.274 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:00:02.274 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:00:02.274 -07 000000467 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:00:02.274 -07 000000585 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:00:02.274 -07 000000512 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:00:02.274 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:00:02.284 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:00:02.284 -07 000000512 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:00:02.284 -07 000000512 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 04:00:02.284 -07 000000512 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:00:02.294 -07 000000512 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 04:00:02.294 -07 000000512 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 04:00:02.294 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:00:02.344 -07 000000512 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:00:02.634 -07 000000447 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:00:02.634 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:00:02.634 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:00:02.634 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1201016592, 0x0, 559484976) start.
17-03-18 04:00:02.674 -07 000000591 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:00:02.674 -07 000000447 INF: FPGA: Recv CAMSNAP
17-03-18 04:00:02.684 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 379 ms to get response, and 387 ms overall
17-03-18 04:00:02.754 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1201016592, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 04:00:02.754 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:00:02.754 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 04:00:02.754 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 04:00:02.784 -07 000000561 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:00:02.784 -07 000000512 INF: Autofocus start
17-03-18 04:00:02.784 -07 000000512 INF: MeasureProfile start
17-03-18 04:00:02.794 -07 000000585 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:00:02.794 -07 000000561 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 04:00:02.794 -07 000000561 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:00:02.804 -07 000000512 INF: MeasureProfile done
17-03-18 04:00:02.804 -07 000000512 INF: X=0  Z correction [um]=-0.02394831
17-03-18 04:00:02.804 -07 000000512 INF: Autofocus finished
17-03-18 04:00:02.994 -07 000000462 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:00:02.994 -07 000000561 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 203 ms overall
17-03-18 04:00:02.994 -07 000000610 INF: ------------ Scan Snapping tile 12 at Y-position 69.02734375, Z-position -0.136326064456262. ----------
17-03-18 04:00:03.004 -07 000000610 INF: Cycle	119	Tile	12	Exposure Settings		A	413	G	199	T	199	C	413
17-03-18 04:00:03.004 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28286, sync = True, waitForSettling = True)
17-03-18 04:00:03.004 -07 000000610 INF: Z Motor: Moving to -0.129485 mm, started at -0.136326 mm, distance = 6.84 um
17-03-18 04:00:03.004 -07 000000610 INF: FPGA: Xmit ZDACW 28286\n [Z Motor]
17-03-18 04:00:03.004 -07 000000591 INF: FPGA: Recv ZDACW
17-03-18 04:00:03.014 -07 000000610 INF: FPGA: 'ZDACW 28286' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 04:00:03.014 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:00:03.014 -07 000000625 INF: FPGA: Recv ZDACR 28286
17-03-18 04:00:03.024 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:00:03.024 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:00:03.174 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:00:03.174 -07 000000608 INF: FPGA: Recv ZSGSRD 29446
17-03-18 04:00:03.184 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:00:03.184 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:00:03.184 -07 000000424 INF: FPGA: Recv ZSGSRD 29449
17-03-18 04:00:03.194 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:00:03.194 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:00:03.194 -07 000000462 INF: FPGA: Recv ZSGSRD 29444
17-03-18 04:00:03.204 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:00:03.204 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:00:03.204 -07 000000608 INF: FPGA: Recv ZSGSRD 29446
17-03-18 04:00:03.214 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:00:03.214 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:00:03.214 -07 000000424 INF: FPGA: Recv ZSGSRD 29443
17-03-18 04:00:03.224 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:00:03.224 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:00:03.224 -07 000000462 INF: FPGA: Recv ZSGSRD 29451
17-03-18 04:00:03.234 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:00:03.234 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:00:03.234 -07 000000424 INF: FPGA: Recv ZSGSRD 29449
17-03-18 04:00:03.244 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:00:03.244 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:00:03.244 -07 000000462 INF: FPGA: Recv ZSGSRD 29445
17-03-18 04:00:03.254 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:00:03.254 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:00:03.254 -07 000000608 INF: FPGA: Recv ZSGSRD 29449
17-03-18 04:00:03.264 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:00:03.264 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:00:03.264 -07 000000462 INF: FPGA: Recv ZSGSRD 29445
17-03-18 04:00:03.274 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:00:03.274 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:00:03.274 -07 000000012 INF: FPGA: Recv ZPIEZORD 24904
17-03-18 04:00:03.284 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:00:03.284 -07 000000610 INF: Z Motor: Piezo is near 33.2 V (nominally 0 to 100 V), expect near 43.2 V, since DAC is at 4.316 V. Piezo Error = -10.0 V.
17-03-18 04:00:03.284 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.5 um, Read 10 ADC samples: Avg = 29447 (-128.7 uncal um), Error = 0.8 uncal um, Median = 29446 (-128.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 29443 (-128.7 uncal um), Max = 29451 (-128.7 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 04:00:03.284 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29447, posNoise = 4, negNoise = 4
17-03-18 04:00:03.284 -07 000000610 INF: Z Motor: After move to -0.129485, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:00:03.284 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 04:00:03.284 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:00:03.284 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:00:03.284 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:00:03.284 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:00:03.284 -07 000000012 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:00:03.284 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:00:03.284 -07 000000437 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:00:03.284 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:00:03.284 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 04:00:03.294 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:00:03.294 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:00:03.294 -07 000000437 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:00:03.294 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 04:00:03.294 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:00:03.294 -07 000000437 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 04:00:03.294 -07 000000437 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:00:03.304 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-18 04:00:03.304 -07 000000012 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 04:00:03.304 -07 000000437 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 04:00:03.304 -07 000000437 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 04:00:03.304 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 413 413 199 199 28463 150\n [Camera]
17-03-18 04:00:03.504 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:00:03.914 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 605
17-03-18 04:00:03.914 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 605
17-03-18 04:00:03.924 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:00:03.924 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:00:03.924 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-18 04:00:03.924 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 605
17-03-18 04:00:03.924 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 605
17-03-18 04:00:03.924 -07 000000437 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:00:03.924 -07 000000437 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:00:03.924 -07 000000437 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) start.
17-03-18 04:00:04.114 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28463 798
17-03-18 04:00:04.264 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP turning grn on 948
17-03-18 04:00:04.304 -07 000000437 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) end. Duration was 376 ms.
17-03-18 04:00:04.304 -07 000000437 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-18 04:00:04.304 -07 000000437 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:00:04.304 -07 000000437 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:00:04.304 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 388 ms.
17-03-18 04:00:04.304 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-18 04:00:04.304 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:00:04.314 -07 000000437 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-18 04:00:04.314 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:00:04.314 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-18 04:00:04.464 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1147
17-03-18 04:00:04.464 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1147
17-03-18 04:00:04.464 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:00:04.464 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:00:04.464 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) start.
17-03-18 04:00:04.464 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1147
17-03-18 04:00:04.464 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1147
17-03-18 04:00:04.464 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:00:04.464 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:00:04.464 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-18 04:00:04.654 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP 1340
17-03-18 04:00:04.654 -07 000000437 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:00:04.654 -07 000000610 INF: FPGA: 'CAMDBLSNAP 413 413 199 199 28463 150' command took 2 ms to send, 1343 ms to get response, and 1347 ms overall
17-03-18 04:00:04.654 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 04:00:04.654 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 13 at Y-position 69.02734375, Z-Position -0.12949712694957. ------
17-03-18 04:00:04.654 -07 000000462 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:00:04.654 -07 000000437 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.8726 mm, moving Z to -0.13591 mm
17-03-18 04:00:04.654 -07 000000437 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:00:04.664 -07 000000424 INF: Y Motor: Entering MoveAbsStepped (target = 111796 steps, sync = True, waitForSettling = True)
17-03-18 04:00:04.664 -07 000000424 INF: Y Motor: Moving to 69.8726 mm, started at 69.0273 mm, delta = 0.8453 mm
17-03-18 04:00:04.664 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:00:04.664 -07 000000561 INF: Z Motor: Entering MoveAbsStepped (DAC = 29689, sync = True, waitForSettling = False)
17-03-18 04:00:04.664 -07 000000561 INF: Z Motor: Moving to -0.135908 mm, started at -0.129497 mm, distance = -6.41 um
17-03-18 04:00:04.674 -07 000000561 INF: FPGA: Xmit ZDACW 29689\n [Z Motor]
17-03-18 04:00:04.864 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) end. Duration was 404 ms.
17-03-18 04:00:04.864 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 04:00:04.864 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:00:04.864 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 403 ms.
17-03-18 04:00:04.864 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-18 04:00:04.864 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:00:04.874 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:00:04.874 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 04:00:04.874 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 412 ms.
17-03-18 04:00:04.874 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-18 04:00:04.884 -07 000000012 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:00:04.884 -07 000000012 INF: FPGA: Recv YRDPOS 141369
17-03-18 04:00:04.884 -07 000000012 INF: FPGA: Recv ZDACW
17-03-18 04:00:04.884 -07 000000561 INF: FPGA: 'ZDACW 29689' command took 0 ms to send, 206 ms to get response, and 222 ms overall
17-03-18 04:00:04.884 -07 000000561 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:00:04.884 -07 000000462 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 226 ms to get response, and 228 ms overall
17-03-18 04:00:04.884 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 216 ms to get response, and 223 ms overall
17-03-18 04:00:04.884 -07 000000424 INF: Y Motor: Encoder = 141369 = motor step 110444.5 = 69.0278 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:00:04.884 -07 000000608 INF: FPGA: Recv ZDACR 29689
17-03-18 04:00:04.894 -07 000000462 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:00:04.894 -07 000000561 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 04:00:04.894 -07 000000561 INF: Z Motor: MoveAbsStepped took 225 ms (did NOT wait for settling yet))
17-03-18 04:00:04.894 -07 000000424 INF: Y Motor: Last commanded position = 69.0426 mm (110468.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:00:04.894 -07 000000424 INF: Y Motor: Moving 1352 steps-31
17-03-18 04:00:04.904 -07 000000424 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:00:05.094 -07 000000608 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:00:05.094 -07 000000462 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 204 ms overall
17-03-18 04:00:05.274 -07 000000561 INF: FPGA: Recv YMVTILE
17-03-18 04:00:05.274 -07 000000424 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 386 ms overall
17-03-18 04:00:05.324 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:00:05.324 -07 000000608 INF: FPGA: Recv YRDPOS 143080
17-03-18 04:00:05.334 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 04:00:05.334 -07 000000424 INF: Y Motor: Encoder = 143080 = motor step 111781.3 = 69.8633 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:00:05.334 -07 000000424 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm)
17-03-18 04:00:05.334 -07 000000424 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 386 ms, distance = 0.845 mm, average velocity = 2.190 mm/sec
17-03-18 04:00:06.284 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:00:06.284 -07 000000608 INF: FPGA: Recv YRDPOS 143080
17-03-18 04:00:06.294 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:00:06.294 -07 000000424 INF: Y Motor: Encoder = 143080 = motor step 111781.3 = 69.8633 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:00:06.324 -07 000000424 INF: Y Motor: After move to 69.872612, error = -0.009331, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:00:06.324 -07 000000424 INF: Y Motor: Position error after settling (table move) = -19 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:00:06.324 -07 000000424 INF: Y Motor: Moved to 69.8633 after 1658 ms (table move)
17-03-18 04:00:06.324 -07 000000437 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135908 mm (DAC = 29689)
17-03-18 04:00:06.324 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:00:06.324 -07 000000012 INF: FPGA: Recv ZSGSRD 30452
17-03-18 04:00:06.334 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 04:00:06.334 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:00:06.334 -07 000000591 INF: FPGA: Recv ZSGSRD 30453
17-03-18 04:00:06.344 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:00:06.344 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:00:06.344 -07 000000579 INF: FPGA: Recv ZSGSRD 30447
17-03-18 04:00:06.354 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:00:06.354 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:00:06.354 -07 000000512 INF: FPGA: Recv ZSGSRD 30447
17-03-18 04:00:06.364 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:00:06.364 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:00:06.364 -07 000000462 INF: FPGA: Recv ZSGSRD 30447
17-03-18 04:00:06.374 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:00:06.374 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:00:06.374 -07 000000561 INF: FPGA: Recv ZSGSRD 30444
17-03-18 04:00:06.384 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:00:06.384 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:00:06.384 -07 000000591 INF: FPGA: Recv ZSGSRD 30442
17-03-18 04:00:06.394 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:00:06.394 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:00:06.394 -07 000000502 INF: FPGA: Recv ZSGSRD 30442
17-03-18 04:00:06.404 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:00:06.404 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:00:06.404 -07 000000012 INF: FPGA: Recv ZSGSRD 30445
17-03-18 04:00:06.414 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:00:06.414 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:00:06.414 -07 000000590 INF: FPGA: Recv ZSGSRD 30450
17-03-18 04:00:06.424 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:00:06.424 -07 000000437 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:00:06.424 -07 000000591 INF: FPGA: Recv ZPIEZORD 26239
17-03-18 04:00:06.434 -07 000000437 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:00:06.434 -07 000000437 INF: Z Motor: Piezo is near 36.1 V (nominally 0 to 100 V), expect near 45.3 V, since DAC is at 4.530 V. Piezo Error = -9.2 V.
17-03-18 04:00:06.434 -07 000000437 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.9 um, Read 10 ADC samples: Avg = 30447 (-135.1 uncal um), Error = 0.8 uncal um, Median = 30447 (-135.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 30442 (-135.1 uncal um), Max = 30453 (-135.2 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 04:00:06.434 -07 000000437 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30447, posNoise = 6, negNoise = 5
17-03-18 04:00:06.434 -07 000000437 INF: Z Motor: After move to -0.135908, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:00:06.434 -07 000000437 INF: Z Motor: Settle wait time = 1660 ms, measure time = 106 ms (allowed 150 ms), total time = 1766 ms
17-03-18 04:00:06.434 -07 000000437 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-18 04:00:06.484 -07 000000437 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1821 ms
17-03-18 04:00:06.484 -07 000000437 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:00:06.484 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:00:06.484 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:00:06.484 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:00:06.484 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:00:06.484 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:00:06.484 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:00:06.484 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 04:00:06.484 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:00:06.494 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 04:00:06.494 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:00:06.494 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 04:00:06.494 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-18 04:00:06.504 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:00:06.544 -07 000000590 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:00:06.624 -07 000000590 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:00:06.624 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 118. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1701, R2=1769, Total=3470. Warn if over 250 bubbles per interval.
17-03-18 04:00:06.844 -07 000000608 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:00:06.844 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:00:06.844 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:00:06.844 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2253754584, 0x0, 559484976) start.
17-03-18 04:00:06.884 -07 000000561 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:00:06.884 -07 000000625 INF: FPGA: Recv CAMSNAP
17-03-18 04:00:06.884 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 375 ms to get response, and 384 ms overall
17-03-18 04:00:06.964 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2253754584, 0x0, 559484976) end. Duration was 118 ms.
17-03-18 04:00:06.964 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:00:06.964 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 04:00:06.964 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 120 ms.
17-03-18 04:00:06.984 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:00:06.984 -07 000000479 INF: Autofocus start
17-03-18 04:00:06.984 -07 000000479 INF: MeasureProfile start
17-03-18 04:00:06.984 -07 000000437 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:00:06.994 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 04:00:06.994 -07 000000424 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:00:06.994 -07 000000479 INF: MeasureProfile done
17-03-18 04:00:06.994 -07 000000479 INF: X=16  Z correction [um]=0.0530179
17-03-18 04:00:06.994 -07 000000479 INF: Autofocus finished
17-03-18 04:00:07.084 -07 000000579 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 119, FrontChillerTemperature: 3.981281,
17-03-18 04:00:07.194 -07 000000591 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:00:07.194 -07 000000424 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:00:07.194 -07 000000610 INF: ------------ Scan Snapping tile 13 at Y-position 69.86328125, Z-position -0.135921339091331. ----------
17-03-18 04:00:07.204 -07 000000610 INF: Cycle	119	Tile	13	Exposure Settings		A	413	G	199	T	199	C	413
17-03-18 04:00:07.204 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28213, sync = True, waitForSettling = True)
17-03-18 04:00:07.204 -07 000000610 INF: Z Motor: Moving to -0.129151 mm, started at -0.135921 mm, distance = 6.77 um
17-03-18 04:00:07.204 -07 000000610 INF: FPGA: Xmit ZDACW 28213\n [Z Motor]
17-03-18 04:00:07.204 -07 000000625 INF: FPGA: Recv ZDACW
17-03-18 04:00:07.214 -07 000000610 INF: FPGA: 'ZDACW 28213' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:00:07.214 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:00:07.214 -07 000000590 INF: FPGA: Recv ZDACR 28213
17-03-18 04:00:07.224 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:00:07.224 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:00:07.374 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:00:07.374 -07 000000462 INF: FPGA: Recv ZSGSRD 29392
17-03-18 04:00:07.384 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:00:07.384 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:00:07.384 -07 000000579 INF: FPGA: Recv ZSGSRD 29396
17-03-18 04:00:07.394 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:00:07.394 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:00:07.394 -07 000000479 INF: FPGA: Recv ZSGSRD 29398
17-03-18 04:00:07.404 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:00:07.404 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:00:07.404 -07 000000590 INF: FPGA: Recv ZSGSRD 29390
17-03-18 04:00:07.414 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:00:07.414 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:00:07.414 -07 000000462 INF: FPGA: Recv ZSGSRD 29394
17-03-18 04:00:07.424 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:00:07.424 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:00:07.424 -07 000000608 INF: FPGA: Recv ZSGSRD 29397
17-03-18 04:00:07.434 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:00:07.434 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:00:07.434 -07 000000479 INF: FPGA: Recv ZSGSRD 29394
17-03-18 04:00:07.444 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:00:07.444 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:00:07.444 -07 000000424 INF: FPGA: Recv ZSGSRD 29396
17-03-18 04:00:07.454 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:00:07.454 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:00:07.454 -07 000000591 INF: FPGA: Recv ZSGSRD 29393
17-03-18 04:00:07.464 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:00:07.464 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:00:07.464 -07 000000608 INF: FPGA: Recv ZSGSRD 29398
17-03-18 04:00:07.474 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:00:07.474 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:00:07.474 -07 000000579 INF: FPGA: Recv ZPIEZORD 24869
17-03-18 04:00:07.484 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:00:07.484 -07 000000610 INF: Z Motor: Piezo is near 33.1 V (nominally 0 to 100 V), expect near 43.1 V, since DAC is at 4.305 V. Piezo Error = -9.9 V.
17-03-18 04:00:07.484 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.2 um, Read 10 ADC samples: Avg = 29395 (-128.4 uncal um), Error = 0.8 uncal um, Median = 29395 (-128.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 29390 (-128.4 uncal um), Max = 29398 (-128.4 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 04:00:07.484 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29395, posNoise = 3, negNoise = 5
17-03-18 04:00:07.484 -07 000000610 INF: Z Motor: After move to -0.129151, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:00:07.484 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-18 04:00:07.484 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:00:07.484 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:00:07.484 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:00:07.484 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:00:07.484 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:00:07.484 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:00:07.484 -07 000000012 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:00:07.484 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:00:07.484 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 04:00:07.484 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:00:07.484 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 04:00:07.484 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:00:07.494 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 04:00:07.494 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:00:07.494 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-18 04:00:07.494 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:00:07.504 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 04:00:07.504 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 04:00:07.504 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-18 04:00:07.504 -07 000000012 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 04:00:07.504 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 413 413 199 199 28390 150\n [Camera]
17-03-18 04:00:07.704 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:00:08.114 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 605
17-03-18 04:00:08.114 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 605
17-03-18 04:00:08.124 -07 000000437 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:00:08.124 -07 000000437 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:00:08.124 -07 000000437 INF: Camera: sBCa_ReadImage(785074288, 2585563240, 0x0, 391868352) start.
17-03-18 04:00:08.124 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 605
17-03-18 04:00:08.124 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 605
17-03-18 04:00:08.124 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:00:08.124 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:00:08.124 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 2620985504, 0x0, 418435064) start.
17-03-18 04:00:08.314 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28390 799
17-03-18 04:00:08.464 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning grn on 948
17-03-18 04:00:08.514 -07 000000437 INF: Camera: sBCa_ReadImage(785074288, 2585563240, 0x0, 391868352) end. Duration was 395 ms.
17-03-18 04:00:08.514 -07 000000437 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 04:00:08.514 -07 000000437 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:00:08.514 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 2620985504, 0x0, 418435064) end. Duration was 395 ms.
17-03-18 04:00:08.514 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 04:00:08.514 -07 000000437 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:00:08.514 -07 000000437 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 04:00:08.514 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:00:08.524 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:00:08.534 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 406 ms.
17-03-18 04:00:08.664 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1147
17-03-18 04:00:08.664 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1147
17-03-18 04:00:08.664 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:00:08.664 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:00:08.664 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 2684358704, 0x0, 391868352) start.
17-03-18 04:00:08.664 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1147
17-03-18 04:00:08.664 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1147
17-03-18 04:00:08.664 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:00:08.804 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:00:08.804 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-18 04:00:08.854 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP 1339
17-03-18 04:00:08.854 -07 000000590 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:00:08.854 -07 000000610 INF: FPGA: 'CAMDBLSNAP 413 413 199 199 28390 150' command took 2 ms to send, 1343 ms to get response, and 1346 ms overall
17-03-18 04:00:08.854 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 04:00:08.854 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 14 at Y-position 69.86328125, Z-Position -0.129163067918198. ------
17-03-18 04:00:08.854 -07 000000437 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:00:08.854 -07 000000590 INF: Y Motor: MoveYZ optimized starting. Moving Y to 70.7026 mm, moving Z to -0.13560 mm
17-03-18 04:00:08.854 -07 000000590 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:00:08.864 -07 000000462 INF: Z Motor: Entering MoveAbsStepped (DAC = 29622, sync = True, waitForSettling = False)
17-03-18 04:00:08.864 -07 000000462 INF: Z Motor: Moving to -0.135601 mm, started at -0.129163 mm, distance = -6.44 um
17-03-18 04:00:08.864 -07 000000462 INF: FPGA: Xmit ZDACW 29622\n [Z Motor]
17-03-18 04:00:08.864 -07 000000591 INF: Y Motor: Entering MoveAbsStepped (target = 113124 steps, sync = True, waitForSettling = True)
17-03-18 04:00:08.864 -07 000000591 INF: Y Motor: Moving to 70.7026 mm, started at 69.8633 mm, delta = 0.8393 mm
17-03-18 04:00:08.874 -07 000000591 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:00:09.074 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 2684358704, 0x0, 391868352) end. Duration was 412 ms.
17-03-18 04:00:09.074 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 412 ms.
17-03-18 04:00:09.074 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:00:09.084 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 04:00:09.084 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 419 ms.
17-03-18 04:00:09.094 -07 000000480 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:00:09.094 -07 000000480 INF: FPGA: Recv ZDACW
17-03-18 04:00:09.094 -07 000000480 INF: FPGA: Recv YRDPOS 143081
17-03-18 04:00:09.094 -07 000000591 INF: FPGA: 'YRDPOS' command took 0 ms to send, 211 ms to get response, and 229 ms overall
17-03-18 04:00:09.094 -07 000000591 INF: Y Motor: Encoder = 143081 = motor step 111782.0 = 69.8638 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:00:09.094 -07 000000462 INF: FPGA: 'ZDACW 29622' command took 0 ms to send, 221 ms to get response, and 230 ms overall
17-03-18 04:00:09.094 -07 000000437 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 231 ms to get response, and 233 ms overall
17-03-18 04:00:09.094 -07 000000462 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:00:09.094 -07 000000591 INF: Y Motor: Last commanded position = 69.8726 mm (111796.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:00:09.094 -07 000000591 INF: Y Motor: Moving 1342 steps-19
17-03-18 04:00:09.094 -07 000000480 INF: FPGA: Recv ZDACR 29622
17-03-18 04:00:09.104 -07 000000462 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 04:00:09.104 -07 000000437 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:00:09.104 -07 000000462 INF: Z Motor: MoveAbsStepped took 239 ms (did NOT wait for settling yet))
17-03-18 04:00:09.114 -07 000000591 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:00:09.204 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 391 ms.
17-03-18 04:00:09.204 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-18 04:00:09.204 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:00:09.204 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-18 04:00:09.214 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 545 ms.
17-03-18 04:00:09.304 -07 000000502 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:00:09.304 -07 000000437 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 208 ms overall
17-03-18 04:00:09.484 -07 000000502 INF: FPGA: Recv YMVTILE
17-03-18 04:00:09.484 -07 000000591 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 390 ms overall
17-03-18 04:00:09.534 -07 000000591 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:00:09.534 -07 000000502 INF: FPGA: Recv YRDPOS 144770
17-03-18 04:00:09.544 -07 000000591 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 04:00:09.544 -07 000000591 INF: Y Motor: Encoder = 144770 = motor step 113101.6 = 70.6885 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:00:09.544 -07 000000591 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-18 04:00:09.544 -07 000000591 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 390 ms, distance = 0.839 mm, average velocity = 2.152 mm/sec
17-03-18 04:00:10.494 -07 000000591 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:00:10.494 -07 000000480 INF: FPGA: Recv YRDPOS 144770
17-03-18 04:00:10.504 -07 000000591 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:00:10.504 -07 000000591 INF: Y Motor: Encoder = 144770 = motor step 113101.6 = 70.6885 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:00:10.534 -07 000000591 INF: Y Motor: After move to 70.702606, error = -0.014130, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:00:10.534 -07 000000591 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:00:10.534 -07 000000591 INF: Y Motor: Moved to 70.6885 after 1671 ms (table move)
17-03-18 04:00:10.534 -07 000000590 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135601 mm (DAC = 29622)
17-03-18 04:00:10.534 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:00:10.534 -07 000000462 INF: FPGA: Recv ZSGSRD 30402
17-03-18 04:00:10.544 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 04:00:10.544 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:00:10.544 -07 000000502 INF: FPGA: Recv ZSGSRD 30404
17-03-18 04:00:10.554 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:00:10.554 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:00:10.554 -07 000000480 INF: FPGA: Recv ZSGSRD 30396
17-03-18 04:00:10.564 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:00:10.564 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:00:10.564 -07 000000502 INF: FPGA: Recv ZSGSRD 30397
17-03-18 04:00:10.574 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:00:10.574 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:00:10.574 -07 000000480 INF: FPGA: Recv ZSGSRD 30401
17-03-18 04:00:10.584 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:00:10.584 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:00:10.584 -07 000000480 INF: FPGA: Recv ZSGSRD 30402
17-03-18 04:00:10.594 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:00:10.594 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:00:10.594 -07 000000437 INF: FPGA: Recv ZSGSRD 30406
17-03-18 04:00:10.604 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 04:00:10.604 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:00:10.604 -07 000000480 INF: FPGA: Recv ZSGSRD 30397
17-03-18 04:00:10.614 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:00:10.614 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:00:10.614 -07 000000502 INF: FPGA: Recv ZSGSRD 30395
17-03-18 04:00:10.624 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:00:10.624 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:00:10.624 -07 000000591 INF: FPGA: Recv ZSGSRD 30401
17-03-18 04:00:10.634 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:00:10.634 -07 000000590 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:00:10.634 -07 000000502 INF: FPGA: Recv ZPIEZORD 26195
17-03-18 04:00:10.644 -07 000000590 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:00:10.644 -07 000000590 INF: Z Motor: Piezo is near 36.0 V (nominally 0 to 100 V), expect near 45.2 V, since DAC is at 4.520 V. Piezo Error = -9.2 V.
17-03-18 04:00:10.644 -07 000000590 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.6 um, Read 10 ADC samples: Avg = 30400 (-134.8 uncal um), Error = 0.8 uncal um, Median = 30401 (-134.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 30395 (-134.8 uncal um), Max = 30406 (-134.9 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 04:00:10.644 -07 000000590 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30400, posNoise = 6, negNoise = 5
17-03-18 04:00:10.644 -07 000000590 INF: Z Motor: After move to -0.135601, error = -0.000019, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:00:10.644 -07 000000590 INF: Z Motor: Settle wait time = 1675 ms, measure time = 104 ms (allowed 150 ms), total time = 1779 ms
17-03-18 04:00:10.644 -07 000000590 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-18 04:00:10.694 -07 000000590 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1832 ms
17-03-18 04:00:10.694 -07 000000590 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:00:10.694 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:00:10.694 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:00:10.694 -07 000000480 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:00:10.694 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:00:10.694 -07 000000591 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:00:10.694 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:00:10.694 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:00:10.694 -07 000000591 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:00:10.704 -07 000000591 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 04:00:10.704 -07 000000591 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:00:10.704 -07 000000591 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 04:00:10.704 -07 000000591 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-18 04:00:10.714 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:00:10.754 -07 000000462 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:00:11.054 -07 000000447 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:00:11.054 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:00:11.054 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:00:11.054 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2317127784, 0x0, 559484976) start.
17-03-18 04:00:11.094 -07 000000447 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:00:11.094 -07 000000437 INF: FPGA: Recv CAMSNAP
17-03-18 04:00:11.094 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 385 ms overall
17-03-18 04:00:11.174 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2317127784, 0x0, 559484976) end. Duration was 117 ms.
17-03-18 04:00:11.174 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:00:11.174 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 04:00:11.174 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 120 ms.
17-03-18 04:00:11.194 -07 000000591 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:00:11.194 -07 000000480 INF: Autofocus start
17-03-18 04:00:11.194 -07 000000480 INF: MeasureProfile start
17-03-18 04:00:11.194 -07 000000462 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:00:11.204 -07 000000591 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 04:00:11.204 -07 000000591 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:00:11.224 -07 000000480 INF: MeasureProfile done
17-03-18 04:00:11.224 -07 000000480 INF: X=16  Z correction [um]=0.0530179
17-03-18 04:00:11.224 -07 000000480 INF: Autofocus finished
17-03-18 04:00:11.404 -07 000000585 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:00:11.404 -07 000000591 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 191 ms to get response, and 203 ms overall
17-03-18 04:00:11.404 -07 000000610 INF: ------------ Scan Snapping tile 14 at Y-position 70.6884765625, Z-position -0.135619401120668. ----------
17-03-18 04:00:11.404 -07 000000610 INF: Cycle	119	Tile	14	Exposure Settings		A	413	G	199	T	199	C	413
17-03-18 04:00:11.414 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28147, sync = True, waitForSettling = True)
17-03-18 04:00:11.414 -07 000000610 INF: Z Motor: Moving to -0.128849 mm, started at -0.135619 mm, distance = 6.77 um
17-03-18 04:00:11.414 -07 000000610 INF: FPGA: Xmit ZDACW 28147\n [Z Motor]
17-03-18 04:00:11.414 -07 000000447 INF: FPGA: Recv ZDACW
17-03-18 04:00:11.424 -07 000000610 INF: FPGA: 'ZDACW 28147' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 04:00:11.424 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:00:11.424 -07 000000502 INF: FPGA: Recv ZDACR 28147
17-03-18 04:00:11.434 -07 000000610 INF: FPGA: 'ZDACR' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:00:11.434 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:00:11.584 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:00:11.584 -07 000000437 INF: FPGA: Recv ZSGSRD 29344
17-03-18 04:00:11.594 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:00:11.594 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:00:11.594 -07 000000447 INF: FPGA: Recv ZSGSRD 29352
17-03-18 04:00:11.604 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:00:11.604 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:00:11.604 -07 000000591 INF: FPGA: Recv ZSGSRD 29347
17-03-18 04:00:11.614 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:00:11.614 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:00:11.614 -07 000000590 INF: FPGA: Recv ZSGSRD 29344
17-03-18 04:00:11.624 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:00:11.624 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:00:11.624 -07 000000502 INF: FPGA: Recv ZSGSRD 29348
17-03-18 04:00:11.624 -07 000000437 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:00:11.624 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 118. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1701, R2=1769, Total=3470. Warn if over 250 bubbles per interval.
17-03-18 04:00:11.634 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:00:11.634 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:00:11.634 -07 000000480 INF: FPGA: Recv ZSGSRD 29349
17-03-18 04:00:11.644 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:00:11.644 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:00:11.644 -07 000000437 INF: FPGA: Recv ZSGSRD 29345
17-03-18 04:00:11.654 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:00:11.654 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:00:11.654 -07 000000480 INF: FPGA: Recv ZSGSRD 29347
17-03-18 04:00:11.664 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:00:11.664 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:00:11.664 -07 000000447 INF: FPGA: Recv ZSGSRD 29349
17-03-18 04:00:11.674 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:00:11.674 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:00:11.674 -07 000000480 INF: FPGA: Recv ZSGSRD 29347
17-03-18 04:00:11.684 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:00:11.684 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:00:11.684 -07 000000447 INF: FPGA: Recv ZPIEZORD 24792
17-03-18 04:00:11.694 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:00:11.694 -07 000000610 INF: Z Motor: Piezo is near 33.0 V (nominally 0 to 100 V), expect near 42.9 V, since DAC is at 4.295 V. Piezo Error = -10.0 V.
17-03-18 04:00:11.694 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.8 um, Read 10 ADC samples: Avg = 29347 (-128.1 uncal um), Error = 0.8 uncal um, Median = 29347 (-128.1 uncal um), StdDev = 2 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 29344 (-128.1 uncal um), Max = 29352 (-128.1 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 04:00:11.694 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29347, posNoise = 5, negNoise = 3
17-03-18 04:00:11.694 -07 000000610 INF: Z Motor: After move to -0.128849, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:00:11.694 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 04:00:11.694 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:00:11.694 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:00:11.694 -07 000000480 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:00:11.694 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:00:11.694 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:00:11.694 -07 000000591 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:00:11.694 -07 000000447 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:00:11.694 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:00:11.694 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 04:00:11.694 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:00:11.694 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:00:11.694 -07 000000447 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:00:11.704 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 5 ms.
17-03-18 04:00:11.704 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:00:11.704 -07 000000447 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 04:00:11.704 -07 000000447 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:00:11.714 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 04:00:11.714 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 23 ms.
17-03-18 04:00:11.714 -07 000000447 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-18 04:00:11.714 -07 000000447 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 23 ms.
17-03-18 04:00:11.724 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 413 413 199 199 28323 150\n [Camera]
17-03-18 04:00:11.924 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:00:12.334 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 605
17-03-18 04:00:12.334 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 605
17-03-18 04:00:12.334 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:00:12.334 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 605
17-03-18 04:00:12.334 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 605
17-03-18 04:00:12.334 -07 000000585 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:00:12.344 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:00:12.344 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-18 04:00:12.344 -07 000000585 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:00:12.344 -07 000000585 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) start.
17-03-18 04:00:12.444 -07 000000591 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 119, FrontChillerTemperature: 3.990831,
17-03-18 04:00:12.524 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28323 798
17-03-18 04:00:12.674 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP turning grn on 948
17-03-18 04:00:12.734 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 394 ms.
17-03-18 04:00:12.734 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 04:00:12.734 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:00:12.744 -07 000000585 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) end. Duration was 395 ms.
17-03-18 04:00:12.744 -07 000000585 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 04:00:12.744 -07 000000585 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:00:12.744 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:00:12.744 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-18 04:00:12.744 -07 000000585 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:00:12.754 -07 000000585 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 416 ms.
17-03-18 04:00:12.874 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1147
17-03-18 04:00:12.874 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1147
17-03-18 04:00:12.874 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:00:12.884 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1147
17-03-18 04:00:12.884 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1147
17-03-18 04:00:12.884 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:00:12.994 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:00:12.994 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) start.
17-03-18 04:00:12.994 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:00:12.994 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-18 04:00:13.064 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP 1339
17-03-18 04:00:13.064 -07 000000590 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:00:13.064 -07 000000610 INF: FPGA: 'CAMDBLSNAP 413 413 199 199 28323 150' command took 2 ms to send, 1337 ms to get response, and 1346 ms overall
17-03-18 04:00:13.074 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 04:00:13.074 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 15 at Y-position 70.6884765625, Z-Position -0.128854705735394. ------
17-03-18 04:00:13.074 -07 000000579 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:00:13.074 -07 000000502 INF: Y Motor: MoveYZ optimized starting. Moving Y to 71.5326 mm, moving Z to -0.13548 mm
17-03-18 04:00:13.074 -07 000000502 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:00:13.074 -07 000000480 INF: Y Motor: Entering MoveAbsStepped (target = 114452 steps, sync = True, waitForSettling = True)
17-03-18 04:00:13.074 -07 000000480 INF: Y Motor: Moving to 71.5326 mm, started at 70.6885 mm, delta = 0.8441 mm
17-03-18 04:00:13.074 -07 000000590 INF: Z Motor: Entering MoveAbsStepped (DAC = 29596, sync = True, waitForSettling = False)
17-03-18 04:00:13.074 -07 000000590 INF: Z Motor: Moving to -0.135482 mm, started at -0.128855 mm, distance = -6.63 um
17-03-18 04:00:13.074 -07 000000467 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:00:13.084 -07 000000579 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:00:13.084 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:00:13.084 -07 000000437 INF: FPGA: Recv YRDPOS 144770
17-03-18 04:00:13.094 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-18 04:00:13.094 -07 000000590 INF: FPGA: Xmit ZDACW 29596\n [Z Motor]
17-03-18 04:00:13.094 -07 000000480 INF: Y Motor: Encoder = 144770 = motor step 113101.6 = 70.6885 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:00:13.094 -07 000000480 INF: Y Motor: Last commanded position = 70.7026 mm (113124.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:00:13.094 -07 000000480 INF: Y Motor: Moving 1351 steps-29
17-03-18 04:00:13.094 -07 000000437 INF: FPGA: Recv ZDACW
17-03-18 04:00:13.104 -07 000000590 INF: FPGA: 'ZDACW 29596' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-18 04:00:13.104 -07 000000579 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:00:13.114 -07 000000480 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:00:13.124 -07 000000590 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:00:13.124 -07 000000608 INF: FPGA: Recv ZDACR 29596
17-03-18 04:00:13.134 -07 000000590 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 04:00:13.134 -07 000000590 INF: Z Motor: MoveAbsStepped took 53 ms (did NOT wait for settling yet))
17-03-18 04:00:13.304 -07 000000625 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:00:13.304 -07 000000579 INF: FPGA: 'FOCMRRFOC' command took 3 ms to send, 195 ms to get response, and 225 ms overall
17-03-18 04:00:13.384 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 388 ms.
17-03-18 04:00:13.384 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-18 04:00:13.384 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:00:13.394 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) end. Duration was 393 ms.
17-03-18 04:00:13.394 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-18 04:00:13.394 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:00:13.394 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:00:13.394 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:00:13.394 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 518 ms.
17-03-18 04:00:13.394 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 517 ms.
17-03-18 04:00:13.484 -07 000000590 INF: FPGA: Recv YMVTILE
17-03-18 04:00:13.484 -07 000000480 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 04:00:13.534 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:00:13.534 -07 000000608 INF: FPGA: Recv YRDPOS 146471
17-03-18 04:00:13.544 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 04:00:13.544 -07 000000480 INF: Y Motor: Encoder = 146471 = motor step 114430.5 = 71.5190 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:00:13.544 -07 000000480 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-18 04:00:13.544 -07 000000480 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.844 mm, average velocity = 2.126 mm/sec
17-03-18 04:00:14.494 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:00:14.494 -07 000000625 INF: FPGA: Recv YRDPOS 146471
17-03-18 04:00:14.504 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:00:14.504 -07 000000480 INF: Y Motor: Encoder = 146471 = motor step 114430.5 = 71.5190 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:00:14.524 -07 000000480 INF: Y Motor: After move to 71.532608, error = -0.013565, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:00:14.524 -07 000000480 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:00:14.524 -07 000000480 INF: Y Motor: Moved to 71.5190 after 1453 ms (table move)
17-03-18 04:00:14.534 -07 000000502 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135482 mm (DAC = 29596)
17-03-18 04:00:14.534 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:00:14.534 -07 000000625 INF: FPGA: Recv ZSGSRD 30387
17-03-18 04:00:14.544 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 04:00:14.544 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:00:14.544 -07 000000462 INF: FPGA: Recv ZSGSRD 30373
17-03-18 04:00:14.554 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:00:14.554 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:00:14.554 -07 000000625 INF: FPGA: Recv ZSGSRD 30382
17-03-18 04:00:14.564 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:00:14.564 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:00:14.564 -07 000000608 INF: FPGA: Recv ZSGSRD 30378
17-03-18 04:00:14.574 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:00:14.574 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:00:14.574 -07 000000480 INF: FPGA: Recv ZSGSRD 30388
17-03-18 04:00:14.584 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:00:14.584 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:00:14.584 -07 000000462 INF: FPGA: Recv ZSGSRD 30378
17-03-18 04:00:14.594 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:00:14.594 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:00:14.594 -07 000000625 INF: FPGA: Recv ZSGSRD 30383
17-03-18 04:00:14.604 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:00:14.604 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:00:14.604 -07 000000462 INF: FPGA: Recv ZSGSRD 30378
17-03-18 04:00:14.614 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:00:14.614 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:00:14.614 -07 000000608 INF: FPGA: Recv ZSGSRD 30376
17-03-18 04:00:14.624 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:00:14.624 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:00:14.624 -07 000000480 INF: FPGA: Recv ZSGSRD 30382
17-03-18 04:00:14.634 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:00:14.634 -07 000000502 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:00:14.634 -07 000000437 INF: FPGA: Recv ZPIEZORD 26136
17-03-18 04:00:14.644 -07 000000502 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:00:14.644 -07 000000502 INF: Z Motor: Piezo is near 35.8 V (nominally 0 to 100 V), expect near 45.2 V, since DAC is at 4.516 V. Piezo Error = -9.3 V.
17-03-18 04:00:14.644 -07 000000502 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.5 um, Read 10 ADC samples: Avg = 30380 (-134.7 uncal um), Error = 0.8 uncal um, Median = 30380 (-134.7 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 30373 (-134.7 uncal um), Max = 30388 (-134.8 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 04:00:14.644 -07 000000502 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30380, posNoise = 8, negNoise = 7
17-03-18 04:00:14.644 -07 000000502 INF: Z Motor: After move to -0.135482, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:00:14.644 -07 000000502 INF: Z Motor: Settle wait time = 1456 ms, measure time = 108 ms (allowed 150 ms), total time = 1564 ms
17-03-18 04:00:14.644 -07 000000502 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-18 04:00:14.694 -07 000000502 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1616 ms
17-03-18 04:00:14.694 -07 000000502 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:00:14.694 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:00:14.694 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:00:14.694 -07 000000625 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:00:14.694 -07 000000437 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:00:14.694 -07 000000502 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:00:14.694 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:00:14.694 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:00:14.694 -07 000000502 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:00:14.694 -07 000000502 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 04:00:14.704 -07 000000502 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:00:14.714 -07 000000502 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 04:00:14.714 -07 000000502 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-18 04:00:14.714 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:00:14.764 -07 000000625 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:00:15.064 -07 000000608 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:00:15.064 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:00:15.064 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:00:15.064 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2348678928, 0x0, 559484976) start.
17-03-18 04:00:15.104 -07 000000608 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:00:15.104 -07 000000625 INF: FPGA: Recv CAMSNAP
17-03-18 04:00:15.104 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 381 ms to get response, and 384 ms overall
17-03-18 04:00:15.174 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2348678928, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 04:00:15.174 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:00:15.184 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 04:00:15.184 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 04:00:15.204 -07 000000502 INF: Autofocus start
17-03-18 04:00:15.204 -07 000000502 INF: MeasureProfile start
17-03-18 04:00:15.204 -07 000000608 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:00:15.204 -07 000000437 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:00:15.214 -07 000000608 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:00:15.214 -07 000000608 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:00:15.214 -07 000000502 INF: MeasureProfile done
17-03-18 04:00:15.214 -07 000000502 INF: X=0  Z correction [um]=-0.02394831
17-03-18 04:00:15.214 -07 000000502 INF: Autofocus finished
17-03-18 04:00:15.414 -07 000000437 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:00:15.414 -07 000000608 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:00:15.414 -07 000000610 INF: ------------ Scan Snapping tile 15 at Y-position 71.51904296875, Z-position -0.135490916877833. ----------
17-03-18 04:00:15.414 -07 000000610 INF: Cycle	119	Tile	15	Exposure Settings		A	413	G	199	T	199	C	413
17-03-18 04:00:15.424 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28103, sync = True, waitForSettling = True)
17-03-18 04:00:15.424 -07 000000610 INF: Z Motor: Moving to -0.128647 mm, started at -0.135491 mm, distance = 6.84 um
17-03-18 04:00:15.424 -07 000000610 INF: FPGA: Xmit ZDACW 28103\n [Z Motor]
17-03-18 04:00:15.424 -07 000000608 INF: FPGA: Recv ZDACW
17-03-18 04:00:15.434 -07 000000610 INF: FPGA: 'ZDACW 28103' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:00:15.434 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:00:15.434 -07 000000437 INF: FPGA: Recv ZDACR 28103
17-03-18 04:00:15.444 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:00:15.444 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:00:15.594 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:00:15.594 -07 000000625 INF: FPGA: Recv ZSGSRD 29317
17-03-18 04:00:15.604 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:00:15.604 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:00:15.604 -07 000000437 INF: FPGA: Recv ZSGSRD 29321
17-03-18 04:00:15.614 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 04:00:15.614 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:00:15.614 -07 000000625 INF: FPGA: Recv ZSGSRD 29314
17-03-18 04:00:15.624 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:00:15.624 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:00:15.624 -07 000000437 INF: FPGA: Recv ZSGSRD 29314
17-03-18 04:00:15.634 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:00:15.634 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:00:15.634 -07 000000625 INF: FPGA: Recv ZSGSRD 29320
17-03-18 04:00:15.644 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:00:15.644 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:00:15.644 -07 000000437 INF: FPGA: Recv ZSGSRD 29318
17-03-18 04:00:15.654 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:00:15.654 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:00:15.654 -07 000000480 INF: FPGA: Recv ZSGSRD 29308
17-03-18 04:00:15.664 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:00:15.664 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:00:15.664 -07 000000625 INF: FPGA: Recv ZSGSRD 29311
17-03-18 04:00:15.674 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:00:15.674 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:00:15.674 -07 000000608 INF: FPGA: Recv ZSGSRD 29320
17-03-18 04:00:15.684 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:00:15.684 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:00:15.684 -07 000000625 INF: FPGA: Recv ZSGSRD 29318
17-03-18 04:00:15.694 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:00:15.694 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:00:15.694 -07 000000462 INF: FPGA: Recv ZPIEZORD 24753
17-03-18 04:00:15.704 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:00:15.704 -07 000000610 INF: Z Motor: Piezo is near 32.9 V (nominally 0 to 100 V), expect near 42.9 V, since DAC is at 4.288 V. Piezo Error = -10.0 V.
17-03-18 04:00:15.704 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.6 um, Read 10 ADC samples: Avg = 29316 (-127.9 uncal um), Error = 0.8 uncal um, Median = 29318 (-127.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 29308 (-127.8 uncal um), Max = 29321 (-127.9 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 04:00:15.704 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29316, posNoise = 5, negNoise = 8
17-03-18 04:00:15.704 -07 000000610 INF: Z Motor: After move to -0.128647, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:00:15.704 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-18 04:00:15.704 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:00:15.704 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:00:15.704 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:00:15.704 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:00:15.704 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:00:15.704 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:00:15.704 -07 000000625 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:00:15.704 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:00:15.704 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:00:15.704 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:00:15.704 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:00:15.704 -07 000000625 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:00:15.714 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 04:00:15.714 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:00:15.714 -07 000000625 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 04:00:15.714 -07 000000625 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:00:15.714 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 04:00:15.714 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 04:00:15.714 -07 000000625 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 04:00:15.714 -07 000000625 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 04:00:15.724 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 413 413 199 199 28280 150\n [Camera]
17-03-18 04:00:15.924 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:00:16.334 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 605
17-03-18 04:00:16.334 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 605
17-03-18 04:00:16.334 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:00:16.334 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 605
17-03-18 04:00:16.344 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 605
17-03-18 04:00:16.344 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:00:16.344 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:00:16.344 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-18 04:00:16.344 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:00:16.344 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) start.
17-03-18 04:00:16.524 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28280 798
17-03-18 04:00:16.624 -07 000000012 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:00:16.624 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 118. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1701, R2=1769, Total=3470. Warn if over 250 bubbles per interval.
17-03-18 04:00:16.684 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP turning grn on 951
17-03-18 04:00:16.714 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 373 ms.
17-03-18 04:00:16.714 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 373 ms.
17-03-18 04:00:16.714 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:00:16.714 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) end. Duration was 372 ms.
17-03-18 04:00:16.724 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 372 ms.
17-03-18 04:00:16.724 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:00:16.724 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:00:16.724 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-18 04:00:16.724 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:00:16.734 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-18 04:00:16.884 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1151
17-03-18 04:00:16.884 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1151
17-03-18 04:00:16.884 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:00:16.884 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:00:16.884 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 04:00:16.884 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1151
17-03-18 04:00:16.884 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1151
17-03-18 04:00:16.884 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:00:16.884 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:00:16.884 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 04:00:17.064 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP 1339
17-03-18 04:00:17.074 -07 000000625 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:00:17.074 -07 000000610 INF: FPGA: 'CAMDBLSNAP 413 413 199 199 28280 150' command took 2 ms to send, 1340 ms to get response, and 1347 ms overall
17-03-18 04:00:17.074 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 04:00:17.074 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 16 at Y-position 71.51904296875, Z-Position -0.128655555158999. ------
17-03-18 04:00:17.074 -07 000000625 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:00:17.074 -07 000000502 INF: Y Motor: MoveYZ optimized starting. Moving Y to 72.3626 mm, moving Z to -0.13502 mm
17-03-18 04:00:17.074 -07 000000502 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:00:17.084 -07 000000462 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:00:17.084 -07 000000625 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 04:00:17.084 -07 000000480 INF: Y Motor: Entering MoveAbsStepped (target = 115780 steps, sync = True, waitForSettling = True)
17-03-18 04:00:17.084 -07 000000480 INF: Y Motor: Moving to 72.3626 mm, started at 71.5190 mm, delta = 0.8436 mm
17-03-18 04:00:17.084 -07 000000625 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:00:17.084 -07 000000437 INF: Z Motor: Entering MoveAbsStepped (DAC = 29495, sync = True, waitForSettling = False)
17-03-18 04:00:17.084 -07 000000437 INF: Z Motor: Moving to -0.135019 mm, started at -0.128656 mm, distance = -6.36 um
17-03-18 04:00:17.094 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:00:17.094 -07 000000512 INF: FPGA: Recv YRDPOS 146471
17-03-18 04:00:17.104 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-18 04:00:17.104 -07 000000480 INF: Y Motor: Encoder = 146471 = motor step 114430.5 = 71.5190 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:00:17.104 -07 000000480 INF: Y Motor: Last commanded position = 71.5326 mm (114452.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:00:17.104 -07 000000437 INF: FPGA: Xmit ZDACW 29495\n [Z Motor]
17-03-18 04:00:17.104 -07 000000480 INF: Y Motor: Moving 1350 steps-28
17-03-18 04:00:17.104 -07 000000561 INF: FPGA: Recv ZDACW
17-03-18 04:00:17.114 -07 000000437 INF: FPGA: 'ZDACW 29495' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-18 04:00:17.114 -07 000000437 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:00:17.114 -07 000000561 INF: FPGA: Recv ZDACR 29495
17-03-18 04:00:17.124 -07 000000480 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:00:17.124 -07 000000437 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:00:17.124 -07 000000437 INF: Z Motor: MoveAbsStepped took 37 ms (did NOT wait for settling yet))
17-03-18 04:00:17.284 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 397 ms.
17-03-18 04:00:17.284 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 04:00:17.284 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:00:17.284 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 395 ms.
17-03-18 04:00:17.284 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 04:00:17.284 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:00:17.284 -07 000000618 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:00:17.284 -07 000000625 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 195 ms to get response, and 202 ms overall
17-03-18 04:00:17.284 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:00:17.284 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 04:00:17.284 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-18 04:00:17.294 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 407 ms.
17-03-18 04:00:17.494 -07 000000561 INF: FPGA: Recv YMVTILE
17-03-18 04:00:17.494 -07 000000480 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 04:00:17.544 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:00:17.554 -07 000000437 INF: FPGA: Recv YRDPOS 148172
17-03-18 04:00:17.554 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 04:00:17.554 -07 000000480 INF: Y Motor: Encoder = 148172 = motor step 115759.4 = 72.3496 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:00:17.554 -07 000000480 INF: Y Motor: Position error before settling (table move) = -27 encoder counts (-0.013 mm)
17-03-18 04:00:17.554 -07 000000480 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.844 mm, average velocity = 2.120 mm/sec
17-03-18 04:00:17.804 -07 000000579 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 119, FrontChillerTemperature: 4.037119,
17-03-18 04:00:18.504 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:00:18.504 -07 000000479 INF: FPGA: Recv YRDPOS 148172
17-03-18 04:00:18.514 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:00:18.514 -07 000000480 INF: Y Motor: Encoder = 148172 = motor step 115759.4 = 72.3496 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:00:18.534 -07 000000480 INF: Y Motor: After move to 72.362610, error = -0.013000, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:00:18.544 -07 000000480 INF: Y Motor: Position error after settling (table move) = -27 encoder counts (-0.013 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:00:18.544 -07 000000480 INF: Y Motor: Moved to 72.3496 after 1458 ms (table move)
17-03-18 04:00:18.544 -07 000000502 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135019 mm (DAC = 29495)
17-03-18 04:00:18.544 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:00:18.544 -07 000000608 INF: FPGA: Recv ZSGSRD 30316
17-03-18 04:00:18.554 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:00:18.554 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:00:18.554 -07 000000480 INF: FPGA: Recv ZSGSRD 30306
17-03-18 04:00:18.564 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:00:18.564 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:00:18.564 -07 000000618 INF: FPGA: Recv ZSGSRD 30307
17-03-18 04:00:18.574 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:00:18.574 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:00:18.574 -07 000000608 INF: FPGA: Recv ZSGSRD 30310
17-03-18 04:00:18.584 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:00:18.584 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:00:18.584 -07 000000424 INF: FPGA: Recv ZSGSRD 30309
17-03-18 04:00:18.594 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:00:18.594 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:00:18.594 -07 000000618 INF: FPGA: Recv ZSGSRD 30306
17-03-18 04:00:18.604 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:00:18.604 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:00:18.604 -07 000000480 INF: FPGA: Recv ZSGSRD 30308
17-03-18 04:00:18.614 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:00:18.614 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:00:18.614 -07 000000424 INF: FPGA: Recv ZSGSRD 30306
17-03-18 04:00:18.624 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:00:18.624 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:00:18.624 -07 000000618 INF: FPGA: Recv ZSGSRD 30310
17-03-18 04:00:18.634 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:00:18.634 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:00:18.634 -07 000000512 INF: FPGA: Recv ZSGSRD 30307
17-03-18 04:00:18.644 -07 000000502 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:00:18.644 -07 000000502 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:00:18.644 -07 000000561 INF: FPGA: Recv ZPIEZORD 26063
17-03-18 04:00:18.654 -07 000000502 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:00:18.654 -07 000000502 INF: Z Motor: Piezo is near 35.7 V (nominally 0 to 100 V), expect near 45.0 V, since DAC is at 4.501 V. Piezo Error = -9.3 V.
17-03-18 04:00:18.654 -07 000000502 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.0 um, Read 10 ADC samples: Avg = 30308 (-134.2 uncal um), Error = 0.8 uncal um, Median = 30308 (-134.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 30306 (-134.2 uncal um), Max = 30316 (-134.3 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 2 (0.0 uncal um)
17-03-18 04:00:18.654 -07 000000502 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30308, posNoise = 8, negNoise = 2
17-03-18 04:00:18.654 -07 000000502 INF: Z Motor: After move to -0.135019, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:00:18.654 -07 000000502 INF: Z Motor: Settle wait time = 1460 ms, measure time = 107 ms (allowed 150 ms), total time = 1567 ms
17-03-18 04:00:18.654 -07 000000502 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-18 04:00:18.704 -07 000000502 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1621 ms
17-03-18 04:00:18.704 -07 000000502 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:00:18.704 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:00:18.704 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:00:18.704 -07 000000625 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:00:18.704 -07 000000437 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:00:18.704 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:00:18.704 -07 000000608 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:00:18.704 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:00:18.704 -07 000000437 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:00:18.704 -07 000000437 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 04:00:18.704 -07 000000437 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:00:18.724 -07 000000437 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-18 04:00:18.724 -07 000000437 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-18 04:00:18.744 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:00:18.784 -07 000000502 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:00:19.084 -07 000000480 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:00:19.084 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:00:19.084 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:00:19.204 -07 000000502 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:00:19.204 -07 000000502 INF: FPGA: Recv CAMSNAP
17-03-18 04:00:19.204 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 456 ms to get response, and 481 ms overall
17-03-18 04:00:19.204 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2317127784, 0x0, 559484976) start.
17-03-18 04:00:19.324 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2317127784, 0x0, 559484976) end. Duration was 117 ms.
17-03-18 04:00:19.324 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:00:19.324 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 04:00:19.324 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 240 ms.
17-03-18 04:00:19.404 -07 000000590 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:00:19.404 -07 000000424 INF: Autofocus start
17-03-18 04:00:19.404 -07 000000424 INF: MeasureProfile start
17-03-18 04:00:19.404 -07 000000561 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:00:19.414 -07 000000590 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:00:19.414 -07 000000590 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:00:19.414 -07 000000424 INF: MeasureProfile done
17-03-18 04:00:19.414 -07 000000424 INF: X=0  Z correction [um]=-0.02394831
17-03-18 04:00:19.414 -07 000000424 INF: Autofocus finished
17-03-18 04:00:19.614 -07 000000424 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:00:19.614 -07 000000590 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 203 ms overall
17-03-18 04:00:19.624 -07 000000610 INF: ------------ Scan Snapping tile 16 at Y-position 72.349609375, Z-position -0.135028373603626. ----------
17-03-18 04:00:19.624 -07 000000610 INF: Cycle	119	Tile	16	Exposure Settings		A	413	G	199	T	199	C	413
17-03-18 04:00:19.624 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28002, sync = True, waitForSettling = True)
17-03-18 04:00:19.624 -07 000000610 INF: Z Motor: Moving to -0.128185 mm, started at -0.135028 mm, distance = 6.84 um
17-03-18 04:00:19.624 -07 000000610 INF: FPGA: Xmit ZDACW 28002\n [Z Motor]
17-03-18 04:00:19.624 -07 000000590 INF: FPGA: Recv ZDACW
17-03-18 04:00:19.634 -07 000000610 INF: FPGA: 'ZDACW 28002' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 04:00:19.634 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:00:19.634 -07 000000424 INF: FPGA: Recv ZDACR 28002
17-03-18 04:00:19.644 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:00:19.644 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:00:19.794 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:00:19.794 -07 000000437 INF: FPGA: Recv ZSGSRD 29247
17-03-18 04:00:19.804 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:00:19.804 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:00:19.804 -07 000000502 INF: FPGA: Recv ZSGSRD 29242
17-03-18 04:00:19.814 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:00:19.814 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:00:19.814 -07 000000437 INF: FPGA: Recv ZSGSRD 29244
17-03-18 04:00:19.824 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:00:19.824 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:00:19.824 -07 000000424 INF: FPGA: Recv ZSGSRD 29241
17-03-18 04:00:19.834 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:00:19.834 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:00:19.834 -07 000000437 INF: FPGA: Recv ZSGSRD 29243
17-03-18 04:00:19.844 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:00:19.844 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:00:19.844 -07 000000502 INF: FPGA: Recv ZSGSRD 29246
17-03-18 04:00:19.854 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:00:19.854 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:00:19.854 -07 000000480 INF: FPGA: Recv ZSGSRD 29242
17-03-18 04:00:19.864 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:00:19.864 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:00:19.864 -07 000000561 INF: FPGA: Recv ZSGSRD 29244
17-03-18 04:00:19.874 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:00:19.874 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:00:19.874 -07 000000502 INF: FPGA: Recv ZSGSRD 29239
17-03-18 04:00:19.884 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:00:19.884 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:00:19.884 -07 000000437 INF: FPGA: Recv ZSGSRD 29246
17-03-18 04:00:19.894 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:00:19.894 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:00:19.894 -07 000000424 INF: FPGA: Recv ZPIEZORD 24658
17-03-18 04:00:19.904 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:00:19.904 -07 000000610 INF: Z Motor: Piezo is near 32.7 V (nominally 0 to 100 V), expect near 42.7 V, since DAC is at 4.273 V. Piezo Error = -10.1 V.
17-03-18 04:00:19.904 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.2 um, Read 10 ADC samples: Avg = 29243 (-127.4 uncal um), Error = 0.8 uncal um, Median = 29244 (-127.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 29239 (-127.4 uncal um), Max = 29247 (-127.4 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 04:00:19.904 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29243, posNoise = 4, negNoise = 4
17-03-18 04:00:19.904 -07 000000610 INF: Z Motor: After move to -0.128185, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:00:19.904 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-18 04:00:19.904 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:00:19.904 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:00:19.904 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:00:19.904 -07 000000590 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:00:19.904 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:00:19.904 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:00:19.904 -07 000000437 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:00:19.904 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:00:19.904 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 04:00:19.904 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:00:19.904 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 04:00:19.904 -07 000000437 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:00:19.914 -07 000000437 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 04:00:19.914 -07 000000437 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:00:19.914 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 04:00:19.914 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:00:19.924 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 04:00:19.924 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 04:00:19.924 -07 000000437 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 04:00:19.924 -07 000000437 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 04:00:19.924 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 413 413 199 199 28179 150\n [Camera]
17-03-18 04:00:20.124 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:00:20.534 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 605
17-03-18 04:00:20.534 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 605
17-03-18 04:00:20.534 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:00:20.534 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 605
17-03-18 04:00:20.534 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 605
17-03-18 04:00:20.534 -07 000000437 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:00:20.544 -07 000000437 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:00:20.544 -07 000000437 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-18 04:00:20.544 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:00:20.544 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 04:00:20.724 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28179 798
17-03-18 04:00:20.884 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning grn on 948
17-03-18 04:00:20.914 -07 000000437 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 370 ms.
17-03-18 04:00:20.914 -07 000000437 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 370 ms.
17-03-18 04:00:20.914 -07 000000437 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:00:20.914 -07 000000437 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:00:20.924 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 374 ms.
17-03-18 04:00:20.924 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 375 ms.
17-03-18 04:00:20.924 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:00:20.924 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:00:20.924 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-18 04:00:20.924 -07 000000437 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-18 04:00:21.074 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1147
17-03-18 04:00:21.074 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1147
17-03-18 04:00:21.074 -07 000000437 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:00:21.084 -07 000000437 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:00:21.084 -07 000000437 INF: Camera: sBCa_ReadImage(785074288, 2327398560, 0x0, 391868352) start.
17-03-18 04:00:21.084 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1147
17-03-18 04:00:21.084 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1147
17-03-18 04:00:21.084 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:00:21.084 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:00:21.084 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 04:00:21.264 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP 1339
17-03-18 04:00:21.264 -07 000000590 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:00:21.264 -07 000000610 INF: FPGA: 'CAMDBLSNAP 413 413 199 199 28179 150' command took 2 ms to send, 1339 ms to get response, and 1347 ms overall
17-03-18 04:00:21.274 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 04:00:21.274 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 17 at Y-position 72.349609375, Z-Position -0.128186587672651. ------
17-03-18 04:00:21.394 -07 000000480 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:00:21.394 -07 000000590 INF: Y Motor: MoveYZ optimized starting. Moving Y to 73.1926 mm, moving Z to -0.13472 mm
17-03-18 04:00:21.394 -07 000000590 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:00:21.394 -07 000000608 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:00:21.394 -07 000000467 INF: Y Motor: Entering MoveAbsStepped (target = 117108 steps, sync = True, waitForSettling = True)
17-03-18 04:00:21.394 -07 000000467 INF: Y Motor: Moving to 73.1926 mm, started at 72.3496 mm, delta = 0.8430 mm
17-03-18 04:00:21.394 -07 000000591 INF: Z Motor: Entering MoveAbsStepped (DAC = 29431, sync = True, waitForSettling = False)
17-03-18 04:00:21.394 -07 000000591 INF: Z Motor: Moving to -0.134726 mm, started at -0.128187 mm, distance = -6.54 um
17-03-18 04:00:21.404 -07 000000480 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 04:00:21.404 -07 000000467 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:00:21.404 -07 000000447 INF: FPGA: Recv YRDPOS 148173
17-03-18 04:00:21.414 -07 000000591 INF: FPGA: Xmit ZDACW 29431\n [Z Motor]
17-03-18 04:00:21.414 -07 000000467 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-18 04:00:21.414 -07 000000467 INF: Y Motor: Encoder = 148173 = motor step 115760.2 = 72.3501 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:00:21.414 -07 000000608 INF: FPGA: Recv ZDACW
17-03-18 04:00:21.414 -07 000000467 INF: Y Motor: Last commanded position = 72.3626 mm (115780.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:00:21.414 -07 000000467 INF: Y Motor: Moving 1348 steps-27
17-03-18 04:00:21.424 -07 000000591 INF: FPGA: 'ZDACW 29431' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-18 04:00:21.424 -07 000000480 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:00:21.434 -07 000000591 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:00:21.434 -07 000000447 INF: FPGA: Recv ZDACR 29431
17-03-18 04:00:21.444 -07 000000467 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:00:21.444 -07 000000591 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 04:00:21.444 -07 000000591 INF: Z Motor: MoveAbsStepped took 45 ms (did NOT wait for settling yet))
17-03-18 04:00:21.474 -07 000000437 INF: Camera: sBCa_ReadImage(785074288, 2327398560, 0x0, 391868352) end. Duration was 391 ms.
17-03-18 04:00:21.474 -07 000000437 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-18 04:00:21.474 -07 000000437 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:00:21.474 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 393 ms.
17-03-18 04:00:21.474 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-18 04:00:21.474 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:00:21.484 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:00:21.484 -07 000000437 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 04:00:21.484 -07 000000437 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 04:00:21.484 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-18 04:00:21.624 -07 000000585 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:00:21.624 -07 000000480 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 222 ms overall
17-03-18 04:00:21.624 -07 000000608 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:00:21.624 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 118. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1701, R2=1769, Total=3470. Warn if over 250 bubbles per interval.
17-03-18 04:00:21.814 -07 000000012 INF: FPGA: Recv YMVTILE
17-03-18 04:00:21.814 -07 000000467 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 399 ms overall
17-03-18 04:00:21.864 -07 000000467 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:00:21.864 -07 000000561 INF: FPGA: Recv YRDPOS 149865
17-03-18 04:00:21.874 -07 000000467 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 04:00:21.874 -07 000000467 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:00:21.874 -07 000000467 INF: Y Motor: Position error before settling (table move) = -33 encoder counts (-0.016 mm)
17-03-18 04:00:21.874 -07 000000467 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 399 ms, distance = 0.843 mm, average velocity = 2.113 mm/sec
17-03-18 04:00:22.824 -07 000000467 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:00:22.824 -07 000000424 INF: FPGA: Recv YRDPOS 149865
17-03-18 04:00:22.834 -07 000000467 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:00:22.834 -07 000000467 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:00:22.864 -07 000000467 INF: Y Motor: After move to 73.192604, error = -0.016335, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:00:22.864 -07 000000467 INF: Y Motor: Position error after settling (table move) = -33 encoder counts (-0.016 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:00:22.864 -07 000000467 INF: Y Motor: Moved to 73.1763 after 1466 ms (table move)
17-03-18 04:00:22.864 -07 000000590 INF: Z Motor: EndOfMoveAbsStepped: target = -0.134726 mm (DAC = 29431)
17-03-18 04:00:22.864 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:00:22.864 -07 000000462 INF: FPGA: Recv ZSGSRD 30262
17-03-18 04:00:22.874 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 04:00:22.874 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:00:22.874 -07 000000608 INF: FPGA: Recv ZSGSRD 30260
17-03-18 04:00:22.884 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:00:22.884 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:00:22.884 -07 000000579 INF: FPGA: Recv ZSGSRD 30262
17-03-18 04:00:22.894 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:00:22.894 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:00:22.894 -07 000000467 INF: FPGA: Recv ZSGSRD 30269
17-03-18 04:00:22.904 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:00:22.904 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:00:22.904 -07 000000012 INF: FPGA: Recv ZSGSRD 30265
17-03-18 04:00:22.914 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:00:22.914 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:00:22.914 -07 000000591 INF: FPGA: Recv ZSGSRD 30261
17-03-18 04:00:22.924 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:00:22.924 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:00:22.924 -07 000000579 INF: FPGA: Recv ZSGSRD 30262
17-03-18 04:00:22.934 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:00:22.934 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:00:22.934 -07 000000480 INF: FPGA: Recv ZSGSRD 30255
17-03-18 04:00:22.944 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:00:22.944 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:00:22.944 -07 000000479 INF: FPGA: Recv ZSGSRD 30266
17-03-18 04:00:22.954 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 04:00:22.954 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:00:22.954 -07 000000462 INF: FPGA: Recv ZSGSRD 30259
17-03-18 04:00:22.964 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:00:22.964 -07 000000590 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:00:22.964 -07 000000585 INF: FPGA: Recv ZPIEZORD 26022
17-03-18 04:00:22.974 -07 000000590 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:00:22.974 -07 000000590 INF: Z Motor: Piezo is near 35.6 V (nominally 0 to 100 V), expect near 44.9 V, since DAC is at 4.491 V. Piezo Error = -9.3 V.
17-03-18 04:00:22.974 -07 000000590 INF: Z Motor: ReadAdcAverage: Commanded Z = -134.7 um, Read 10 ADC samples: Avg = 30262 (-133.9 uncal um), Error = 0.8 uncal um, Median = 30262 (-133.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 30255 (-133.9 uncal um), Max = 30269 (-134.0 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 04:00:22.974 -07 000000590 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30262, posNoise = 7, negNoise = 7
17-03-18 04:00:22.974 -07 000000590 INF: Z Motor: After move to -0.134726, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:00:22.974 -07 000000590 INF: Z Motor: Settle wait time = 1469 ms, measure time = 106 ms (allowed 150 ms), total time = 1575 ms
17-03-18 04:00:22.974 -07 000000590 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-18 04:00:23.024 -07 000000590 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1628 ms
17-03-18 04:00:23.024 -07 000000590 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:00:23.024 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:00:23.024 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:00:23.024 -07 000000012 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:00:23.024 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:00:23.024 -07 000000479 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:00:23.024 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:00:23.024 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:00:23.024 -07 000000479 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:00:23.034 -07 000000479 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 04:00:23.034 -07 000000479 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:00:23.044 -07 000000479 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 04:00:23.044 -07 000000479 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-18 04:00:23.044 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:00:23.094 -07 000000437 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:00:23.164 -07 000000480 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 119, FrontChillerTemperature: 4.026244,
17-03-18 04:00:23.394 -07 000000462 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:00:23.394 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:00:23.394 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:00:23.394 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 04:00:23.434 -07 000000591 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:00:23.434 -07 000000467 INF: FPGA: Recv CAMSNAP
17-03-18 04:00:23.434 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 381 ms to get response, and 384 ms overall
17-03-18 04:00:23.514 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 04:00:23.514 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:00:23.514 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 04:00:23.514 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-18 04:00:23.534 -07 000000480 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:00:23.534 -07 000000012 INF: Autofocus start
17-03-18 04:00:23.534 -07 000000012 INF: MeasureProfile start
17-03-18 04:00:23.534 -07 000000579 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:00:23.544 -07 000000480 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:00:23.544 -07 000000480 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:00:23.554 -07 000000012 INF: MeasureProfile done
17-03-18 04:00:23.554 -07 000000012 INF: X=16  Z correction [um]=0.0530179
17-03-18 04:00:23.554 -07 000000012 INF: Autofocus finished
17-03-18 04:00:23.744 -07 000000447 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:00:23.744 -07 000000480 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:00:23.744 -07 000000610 INF: ------------ Scan Snapping tile 17 at Y-position 73.17626953125, Z-position -0.134732859845105. ----------
17-03-18 04:00:23.744 -07 000000610 INF: Cycle	119	Tile	17	Exposure Settings		A	413	G	199	T	199	C	413
17-03-18 04:00:23.754 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27955, sync = True, waitForSettling = True)
17-03-18 04:00:23.754 -07 000000610 INF: Z Motor: Moving to -0.127970 mm, started at -0.134733 mm, distance = 6.76 um
17-03-18 04:00:23.754 -07 000000610 INF: FPGA: Xmit ZDACW 27955\n [Z Motor]
17-03-18 04:00:23.754 -07 000000012 INF: FPGA: Recv ZDACW
17-03-18 04:00:23.764 -07 000000610 INF: FPGA: 'ZDACW 27955' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:00:23.764 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:00:23.764 -07 000000590 INF: FPGA: Recv ZDACR 27955
17-03-18 04:00:23.774 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:00:23.774 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:00:23.924 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:00:23.924 -07 000000480 INF: FPGA: Recv ZSGSRD 29214
17-03-18 04:00:23.934 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:00:23.934 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:00:23.934 -07 000000012 INF: FPGA: Recv ZSGSRD 29207
17-03-18 04:00:23.944 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:00:23.944 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:00:23.944 -07 000000608 INF: FPGA: Recv ZSGSRD 29216
17-03-18 04:00:23.954 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:00:23.954 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:00:23.954 -07 000000579 INF: FPGA: Recv ZSGSRD 29204
17-03-18 04:00:23.964 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:00:23.964 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:00:23.964 -07 000000585 INF: FPGA: Recv ZSGSRD 29212
17-03-18 04:00:23.974 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:00:23.974 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:00:23.974 -07 000000012 INF: FPGA: Recv ZSGSRD 29210
17-03-18 04:00:23.984 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:00:23.984 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:00:23.984 -07 000000608 INF: FPGA: Recv ZSGSRD 29202
17-03-18 04:00:23.994 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:00:23.994 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:00:23.994 -07 000000467 INF: FPGA: Recv ZSGSRD 29213
17-03-18 04:00:24.004 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:00:24.004 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:00:24.004 -07 000000585 INF: FPGA: Recv ZSGSRD 29205
17-03-18 04:00:24.014 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:00:24.014 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:00:24.014 -07 000000590 INF: FPGA: Recv ZSGSRD 29205
17-03-18 04:00:24.024 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:00:24.024 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:00:24.024 -07 000000480 INF: FPGA: Recv ZPIEZORD 24662
17-03-18 04:00:24.034 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:00:24.034 -07 000000610 INF: Z Motor: Piezo is near 32.7 V (nominally 0 to 100 V), expect near 42.7 V, since DAC is at 4.266 V. Piezo Error = -10.0 V.
17-03-18 04:00:24.034 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.0 um, Read 10 ADC samples: Avg = 29209 (-127.2 uncal um), Error = 0.8 uncal um, Median = 29208 (-127.2 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 29202 (-127.1 uncal um), Max = 29216 (-127.2 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 04:00:24.034 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29209, posNoise = 7, negNoise = 7
17-03-18 04:00:24.034 -07 000000610 INF: Z Motor: After move to -0.127970, error = 0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:00:24.034 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 04:00:24.034 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:00:24.034 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:00:24.034 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:00:24.034 -07 000000437 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:00:24.034 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:00:24.034 -07 000000585 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:00:24.034 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:00:24.034 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 04:00:24.034 -07 000000437 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:00:24.034 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 04:00:24.034 -07 000000585 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:00:24.034 -07 000000590 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:00:24.044 -07 000000437 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-18 04:00:24.044 -07 000000437 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:00:24.044 -07 000000585 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 04:00:24.044 -07 000000585 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:00:24.054 -07 000000585 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 04:00:24.054 -07 000000585 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 04:00:24.054 -07 000000437 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-18 04:00:24.054 -07 000000437 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 04:00:24.054 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 413 413 199 199 28132 150\n [Camera]
17-03-18 04:00:24.254 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:00:24.664 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 605
17-03-18 04:00:24.664 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 605
17-03-18 04:00:24.664 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:00:24.664 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 605
17-03-18 04:00:24.664 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 605
17-03-18 04:00:24.674 -07 000000437 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:00:24.674 -07 000000437 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:00:24.674 -07 000000437 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 04:00:24.674 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:00:24.674 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-18 04:00:24.854 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28132 798
17-03-18 04:00:25.004 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning grn on 948
17-03-18 04:00:25.044 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 377 ms.
17-03-18 04:00:25.044 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-18 04:00:25.044 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:00:25.054 -07 000000437 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 379 ms.
17-03-18 04:00:25.054 -07 000000437 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-18 04:00:25.054 -07 000000437 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:00:25.054 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 04:00:25.054 -07 000000437 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 04:00:25.054 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-18 04:00:25.064 -07 000000437 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-18 04:00:25.204 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1147
17-03-18 04:00:25.204 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1147
17-03-18 04:00:25.204 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:00:25.204 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:00:25.204 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) start.
17-03-18 04:00:25.214 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1147
17-03-18 04:00:25.214 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1147
17-03-18 04:00:25.214 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:00:25.214 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:00:25.214 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) start.
17-03-18 04:00:25.394 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP 1339
17-03-18 04:00:25.404 -07 000000480 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:00:25.404 -07 000000610 INF: FPGA: 'CAMDBLSNAP 413 413 199 199 28132 150' command took 2 ms to send, 1340 ms to get response, and 1346 ms overall
17-03-18 04:00:25.404 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 04:00:25.404 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 18 at Y-position 73.17626953125, Z-Position -0.127968164459831. ------
17-03-18 04:00:25.404 -07 000000462 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:00:25.404 -07 000000512 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.0226 mm, moving Z to -0.13395 mm
17-03-18 04:00:25.404 -07 000000512 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:00:25.404 -07 000000480 INF: Y Motor: Entering MoveAbsStepped (target = 118436 steps, sync = True, waitForSettling = True)
17-03-18 04:00:25.404 -07 000000480 INF: Y Motor: Moving to 74.0226 mm, started at 73.1763 mm, delta = 0.8463 mm
17-03-18 04:00:25.404 -07 000000437 INF: Z Motor: Entering MoveAbsStepped (DAC = 29261, sync = True, waitForSettling = False)
17-03-18 04:00:25.404 -07 000000437 INF: Z Motor: Moving to -0.133948 mm, started at -0.127968 mm, distance = -5.98 um
17-03-18 04:00:25.404 -07 000000561 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:00:25.414 -07 000000462 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 04:00:25.414 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:00:25.414 -07 000000585 INF: FPGA: Recv YRDPOS 149865
17-03-18 04:00:25.424 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-18 04:00:25.424 -07 000000480 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:00:25.424 -07 000000480 INF: Y Motor: Last commanded position = 73.1926 mm (117108.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:00:25.424 -07 000000480 INF: Y Motor: Moving 1354 steps-33
17-03-18 04:00:25.424 -07 000000462 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:00:25.434 -07 000000437 INF: FPGA: Xmit ZDACW 29261\n [Z Motor]
17-03-18 04:00:25.434 -07 000000585 INF: FPGA: Recv ZDACW
17-03-18 04:00:25.444 -07 000000437 INF: FPGA: 'ZDACW 29261' command took 0 ms to send, 0 ms to get response, and 32 ms overall
17-03-18 04:00:25.444 -07 000000480 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:00:25.454 -07 000000437 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:00:25.454 -07 000000585 INF: FPGA: Recv ZDACR 29261
17-03-18 04:00:25.464 -07 000000437 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 04:00:25.464 -07 000000437 INF: Z Motor: MoveAbsStepped took 52 ms (did NOT wait for settling yet))
17-03-18 04:00:25.614 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) end. Duration was 402 ms.
17-03-18 04:00:25.614 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 04:00:25.614 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:00:25.614 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) end. Duration was 401 ms.
17-03-18 04:00:25.614 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-18 04:00:25.614 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:00:25.614 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:00:25.614 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 04:00:25.614 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 410 ms.
17-03-18 04:00:25.624 -07 000000437 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:00:25.624 -07 000000462 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 194 ms to get response, and 213 ms overall
17-03-18 04:00:25.624 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-18 04:00:25.814 -07 000000462 INF: FPGA: Recv YMVTILE
17-03-18 04:00:25.814 -07 000000480 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 04:00:25.854 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:00:25.864 -07 000000590 INF: FPGA: Recv YRDPOS 151569
17-03-18 04:00:25.864 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 04:00:25.864 -07 000000480 INF: Y Motor: Encoder = 151569 = motor step 118413.3 = 74.0083 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:00:25.864 -07 000000480 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-18 04:00:25.864 -07 000000480 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.846 mm, average velocity = 2.132 mm/sec
17-03-18 04:00:26.624 -07 000000590 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:00:26.624 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 118. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1701, R2=1769, Total=3470. Warn if over 250 bubbles per interval.
17-03-18 04:00:26.814 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:00:26.814 -07 000000590 INF: FPGA: Recv YRDPOS 151569
17-03-18 04:00:26.824 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:00:26.824 -07 000000480 INF: Y Motor: Encoder = 151569 = motor step 118413.3 = 74.0083 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:00:26.844 -07 000000480 INF: Y Motor: After move to 74.022606, error = -0.014305, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:00:26.844 -07 000000480 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:00:26.844 -07 000000480 INF: Y Motor: Moved to 74.0083 after 1436 ms (table move)
17-03-18 04:00:26.844 -07 000000512 INF: Z Motor: EndOfMoveAbsStepped: target = -0.133948 mm (DAC = 29261)
17-03-18 04:00:26.844 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:00:26.854 -07 000000561 INF: FPGA: Recv ZSGSRD 30148
17-03-18 04:00:26.854 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 04:00:26.854 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:00:26.854 -07 000000590 INF: FPGA: Recv ZSGSRD 30144
17-03-18 04:00:26.864 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:00:26.864 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:00:26.864 -07 000000561 INF: FPGA: Recv ZSGSRD 30142
17-03-18 04:00:26.874 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:00:26.874 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:00:26.874 -07 000000585 INF: FPGA: Recv ZSGSRD 30140
17-03-18 04:00:26.884 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:00:26.884 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:00:26.884 -07 000000561 INF: FPGA: Recv ZSGSRD 30141
17-03-18 04:00:26.894 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:00:26.894 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:00:26.894 -07 000000590 INF: FPGA: Recv ZSGSRD 30140
17-03-18 04:00:26.904 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:00:26.904 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:00:26.904 -07 000000462 INF: FPGA: Recv ZSGSRD 30144
17-03-18 04:00:26.914 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:00:26.914 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:00:26.914 -07 000000579 INF: FPGA: Recv ZSGSRD 30142
17-03-18 04:00:26.924 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:00:26.924 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:00:26.924 -07 000000561 INF: FPGA: Recv ZSGSRD 30137
17-03-18 04:00:26.934 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:00:26.934 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:00:26.934 -07 000000590 INF: FPGA: Recv ZSGSRD 30138
17-03-18 04:00:26.944 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:00:26.944 -07 000000512 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:00:26.944 -07 000000480 INF: FPGA: Recv ZPIEZORD 25880
17-03-18 04:00:26.954 -07 000000512 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:00:26.954 -07 000000512 INF: Z Motor: Piezo is near 35.3 V (nominally 0 to 100 V), expect near 44.6 V, since DAC is at 4.465 V. Piezo Error = -9.4 V.
17-03-18 04:00:26.954 -07 000000512 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.9 um, Read 10 ADC samples: Avg = 30142 (-133.2 uncal um), Error = 0.8 uncal um, Median = 30142 (-133.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 30137 (-133.1 uncal um), Max = 30148 (-133.2 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 04:00:26.954 -07 000000512 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30142, posNoise = 6, negNoise = 5
17-03-18 04:00:26.954 -07 000000512 INF: Z Motor: After move to -0.133948, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:00:26.954 -07 000000512 INF: Z Motor: Settle wait time = 1439 ms, measure time = 103 ms (allowed 150 ms), total time = 1542 ms
17-03-18 04:00:26.954 -07 000000512 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-18 04:00:27.004 -07 000000512 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1594 ms
17-03-18 04:00:27.004 -07 000000512 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:00:27.004 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:00:27.004 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:00:27.004 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:00:27.004 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:00:27.004 -07 000000585 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:00:27.004 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:00:27.004 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:00:27.004 -07 000000585 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:00:27.014 -07 000000585 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 04:00:27.014 -07 000000585 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:00:27.024 -07 000000585 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 04:00:27.024 -07 000000585 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-18 04:00:27.024 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:00:27.074 -07 000000480 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:00:27.374 -07 000000462 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:00:27.374 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:00:27.374 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:00:27.374 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2317127784, 0x0, 559484976) start.
17-03-18 04:00:27.414 -07 000000437 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:00:27.414 -07 000000462 INF: FPGA: Recv CAMSNAP
17-03-18 04:00:27.414 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 385 ms to get response, and 387 ms overall
17-03-18 04:00:27.494 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2317127784, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 04:00:27.494 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:00:27.494 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 04:00:27.494 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 120 ms.
17-03-18 04:00:27.514 -07 000000480 INF: Autofocus start
17-03-18 04:00:27.514 -07 000000480 INF: MeasureProfile start
17-03-18 04:00:27.514 -07 000000585 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:00:27.514 -07 000000579 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:00:27.524 -07 000000585 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:00:27.524 -07 000000585 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:00:27.524 -07 000000480 INF: MeasureProfile done
17-03-18 04:00:27.524 -07 000000480 INF: X=-16  Z correction [um]=-0.08128808
17-03-18 04:00:27.524 -07 000000480 INF: Autofocus finished
17-03-18 04:00:27.724 -07 000000512 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:00:27.724 -07 000000585 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:00:27.724 -07 000000610 INF: ------------ Scan Snapping tile 18 at Y-position 74.00830078125, Z-position -0.133961954388094. ----------
17-03-18 04:00:27.724 -07 000000610 INF: Cycle	119	Tile	18	Exposure Settings		A	413	G	199	T	199	C	413
17-03-18 04:00:27.734 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27756, sync = True, waitForSettling = True)
17-03-18 04:00:27.734 -07 000000610 INF: Z Motor: Moving to -0.127059 mm, started at -0.133962 mm, distance = 6.90 um
17-03-18 04:00:27.734 -07 000000610 INF: FPGA: Xmit ZDACW 27756\n [Z Motor]
17-03-18 04:00:27.734 -07 000000512 INF: FPGA: Recv ZDACW
17-03-18 04:00:27.744 -07 000000610 INF: FPGA: 'ZDACW 27756' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:00:27.744 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:00:27.744 -07 000000579 INF: FPGA: Recv ZDACR 27756
17-03-18 04:00:27.754 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:00:27.754 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:00:27.904 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:00:27.904 -07 000000561 INF: FPGA: Recv ZSGSRD 29065
17-03-18 04:00:27.914 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:00:27.914 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:00:27.914 -07 000000480 INF: FPGA: Recv ZSGSRD 29065
17-03-18 04:00:27.924 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:00:27.924 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:00:27.924 -07 000000512 INF: FPGA: Recv ZSGSRD 29067
17-03-18 04:00:27.934 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:00:27.934 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:00:27.934 -07 000000480 INF: FPGA: Recv ZSGSRD 29070
17-03-18 04:00:27.944 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 04:00:27.944 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:00:27.944 -07 000000437 INF: FPGA: Recv ZSGSRD 29069
17-03-18 04:00:27.954 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:00:27.954 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:00:27.954 -07 000000512 INF: FPGA: Recv ZSGSRD 29068
17-03-18 04:00:27.964 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:00:27.964 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:00:27.964 -07 000000561 INF: FPGA: Recv ZSGSRD 29066
17-03-18 04:00:27.974 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:00:27.974 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:00:27.974 -07 000000585 INF: FPGA: Recv ZSGSRD 29068
17-03-18 04:00:27.984 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:00:27.984 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:00:27.984 -07 000000561 INF: FPGA: Recv ZSGSRD 29065
17-03-18 04:00:27.994 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:00:27.994 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:00:27.994 -07 000000480 INF: FPGA: Recv ZSGSRD 29070
17-03-18 04:00:28.004 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:00:28.004 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:00:28.004 -07 000000437 INF: FPGA: Recv ZPIEZORD 24495
17-03-18 04:00:28.014 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:00:28.014 -07 000000610 INF: Z Motor: Piezo is near 32.3 V (nominally 0 to 100 V), expect near 42.4 V, since DAC is at 4.235 V. Piezo Error = -10.0 V.
17-03-18 04:00:28.014 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -127.1 um, Read 10 ADC samples: Avg = 29067 (-126.3 uncal um), Error = 0.8 uncal um, Median = 29068 (-126.3 uncal um), StdDev = 2 (0.0 uncal um), Range = 5 (0.0 uncal um), Min = 29065 (-126.3 uncal um), Max = 29070 (-126.3 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 2 (0.0 uncal um)
17-03-18 04:00:28.014 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29067, posNoise = 3, negNoise = 2
17-03-18 04:00:28.014 -07 000000610 INF: Z Motor: After move to -0.127059, error = 0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:00:28.014 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 04:00:28.014 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:00:28.014 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:00:28.014 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:00:28.014 -07 000000585 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:00:28.014 -07 000000590 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:00:28.014 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:00:28.014 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:00:28.014 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:00:28.014 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:00:28.014 -07 000000590 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:00:28.014 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:00:28.014 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:00:28.014 -07 000000590 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 04:00:28.024 -07 000000590 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:00:28.024 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 04:00:28.024 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:00:28.024 -07 000000590 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 04:00:28.024 -07 000000590 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 04:00:28.024 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 04:00:28.024 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 04:00:28.034 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 413 413 199 199 27933 150\n [Camera]
17-03-18 04:00:28.234 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:00:28.524 -07 000000462 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 119, FrontChillerTemperature: 4.011254,
17-03-18 04:00:28.644 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 605
17-03-18 04:00:28.644 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 605
17-03-18 04:00:28.644 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:00:28.644 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:00:28.644 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 04:00:28.644 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 605
17-03-18 04:00:28.644 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 605
17-03-18 04:00:28.654 -07 000000437 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:00:28.654 -07 000000437 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:00:28.654 -07 000000437 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-18 04:00:28.834 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 27933 798
17-03-18 04:00:28.984 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning grn on 948
17-03-18 04:00:29.024 -07 000000437 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 375 ms.
17-03-18 04:00:29.024 -07 000000437 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-18 04:00:29.024 -07 000000437 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:00:29.034 -07 000000437 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:00:29.034 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 382 ms.
17-03-18 04:00:29.034 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-18 04:00:29.034 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:00:29.034 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:00:29.034 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-18 04:00:29.034 -07 000000437 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-18 04:00:29.184 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1147
17-03-18 04:00:29.184 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1147
17-03-18 04:00:29.184 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:00:29.184 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:00:29.184 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-18 04:00:29.194 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1147
17-03-18 04:00:29.194 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1147
17-03-18 04:00:29.194 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:00:29.194 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:00:29.194 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 04:00:29.374 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP 1340
17-03-18 04:00:29.384 -07 000000480 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:00:29.384 -07 000000610 INF: FPGA: 'CAMDBLSNAP 413 413 199 199 27933 150' command took 2 ms to send, 1342 ms to get response, and 1349 ms overall
17-03-18 04:00:29.384 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 04:00:29.384 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 19 at Y-position 74.00830078125, Z-Position -0.127055926335701. ------
17-03-18 04:00:29.384 -07 000000437 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:00:29.384 -07 000000561 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.8526 mm, moving Z to -0.13327 mm
17-03-18 04:00:29.384 -07 000000561 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:00:29.394 -07 000000480 INF: Y Motor: Entering MoveAbsStepped (target = 119764 steps, sync = True, waitForSettling = True)
17-03-18 04:00:29.394 -07 000000480 INF: Y Motor: Moving to 74.8526 mm, started at 74.0083 mm, delta = 0.8443 mm
17-03-18 04:00:29.394 -07 000000462 INF: Z Motor: Entering MoveAbsStepped (DAC = 29114, sync = True, waitForSettling = False)
17-03-18 04:00:29.394 -07 000000462 INF: Z Motor: Moving to -0.133275 mm, started at -0.127056 mm, distance = -6.22 um
17-03-18 04:00:29.394 -07 000000585 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:00:29.394 -07 000000437 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 3 ms to get response, and 4 ms overall
17-03-18 04:00:29.394 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:00:29.394 -07 000000618 INF: FPGA: Recv YRDPOS 151569
17-03-18 04:00:29.404 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 04:00:29.404 -07 000000480 INF: Y Motor: Encoder = 151569 = motor step 118413.3 = 74.0083 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:00:29.404 -07 000000480 INF: Y Motor: Last commanded position = 74.0226 mm (118436.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:00:29.404 -07 000000480 INF: Y Motor: Moving 1351 steps-29
17-03-18 04:00:29.404 -07 000000437 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:00:29.414 -07 000000462 INF: FPGA: Xmit ZDACW 29114\n [Z Motor]
17-03-18 04:00:29.414 -07 000000579 INF: FPGA: Recv ZDACW
17-03-18 04:00:29.424 -07 000000480 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:00:29.424 -07 000000462 INF: FPGA: 'ZDACW 29114' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-18 04:00:29.434 -07 000000462 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:00:29.434 -07 000000618 INF: FPGA: Recv ZDACR 29114
17-03-18 04:00:29.444 -07 000000462 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 04:00:29.444 -07 000000462 INF: Z Motor: MoveAbsStepped took 49 ms (did NOT wait for settling yet))
17-03-18 04:00:29.594 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 401 ms.
17-03-18 04:00:29.594 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 04:00:29.594 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:00:29.594 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 399 ms.
17-03-18 04:00:29.594 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 04:00:29.594 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:00:29.594 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:00:29.594 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 04:00:29.594 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms.
17-03-18 04:00:29.604 -07 000000579 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:00:29.604 -07 000000437 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 193 ms to get response, and 210 ms overall
17-03-18 04:00:29.604 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-18 04:00:29.794 -07 000000012 INF: FPGA: Recv YMVTILE
17-03-18 04:00:29.794 -07 000000480 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 04:00:29.824 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:00:29.834 -07 000000579 INF: FPGA: Recv YRDPOS 153256
17-03-18 04:00:29.834 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 04:00:29.834 -07 000000480 INF: Y Motor: Encoder = 153256 = motor step 119731.3 = 74.8320 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:00:29.834 -07 000000480 INF: Y Motor: Position error before settling (table move) = -42 encoder counts (-0.021 mm)
17-03-18 04:00:29.834 -07 000000480 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.844 mm, average velocity = 2.127 mm/sec
17-03-18 04:00:30.784 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:00:30.784 -07 000000012 INF: FPGA: Recv YRDPOS 153256
17-03-18 04:00:30.794 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:00:30.794 -07 000000480 INF: Y Motor: Encoder = 153256 = motor step 119731.3 = 74.8320 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:00:30.814 -07 000000480 INF: Y Motor: After move to 74.852608, error = -0.020576, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:00:30.814 -07 000000480 INF: Y Motor: Position error after settling (table move) = -42 encoder counts (-0.021 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:00:30.814 -07 000000480 INF: Y Motor: Moved to 74.8320 after 1418 ms (table move)
17-03-18 04:00:30.814 -07 000000561 INF: Z Motor: EndOfMoveAbsStepped: target = -0.133275 mm (DAC = 29114)
17-03-18 04:00:30.814 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:00:30.814 -07 000000618 INF: FPGA: Recv ZSGSRD 30040
17-03-18 04:00:30.824 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:00:30.824 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:00:30.824 -07 000000480 INF: FPGA: Recv ZSGSRD 30036
17-03-18 04:00:30.834 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:00:30.834 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:00:30.834 -07 000000625 INF: FPGA: Recv ZSGSRD 30030
17-03-18 04:00:30.844 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:00:30.844 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:00:30.844 -07 000000579 INF: FPGA: Recv ZSGSRD 30031
17-03-18 04:00:30.854 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:00:30.854 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:00:30.854 -07 000000590 INF: FPGA: Recv ZSGSRD 30030
17-03-18 04:00:30.864 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:00:30.864 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:00:30.864 -07 000000480 INF: FPGA: Recv ZSGSRD 30036
17-03-18 04:00:30.874 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:00:30.874 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:00:30.874 -07 000000625 INF: FPGA: Recv ZSGSRD 30038
17-03-18 04:00:30.884 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:00:30.884 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:00:30.884 -07 000000437 INF: FPGA: Recv ZSGSRD 30033
17-03-18 04:00:30.894 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:00:30.894 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:00:30.894 -07 000000590 INF: FPGA: Recv ZSGSRD 30038
17-03-18 04:00:30.904 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:00:30.904 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:00:30.904 -07 000000512 INF: FPGA: Recv ZSGSRD 30037
17-03-18 04:00:30.914 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:00:30.914 -07 000000561 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:00:30.914 -07 000000590 INF: FPGA: Recv ZPIEZORD 25770
17-03-18 04:00:30.924 -07 000000561 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:00:30.924 -07 000000561 INF: Z Motor: Piezo is near 35.1 V (nominally 0 to 100 V), expect near 44.4 V, since DAC is at 4.443 V. Piezo Error = -9.4 V.
17-03-18 04:00:30.924 -07 000000561 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.3 um, Read 10 ADC samples: Avg = 30035 (-132.5 uncal um), Error = 0.8 uncal um, Median = 30036 (-132.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 30030 (-132.5 uncal um), Max = 30040 (-132.5 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 04:00:30.924 -07 000000561 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30035, posNoise = 5, negNoise = 5
17-03-18 04:00:30.924 -07 000000561 INF: Z Motor: After move to -0.133275, error = 0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:00:30.924 -07 000000561 INF: Z Motor: Settle wait time = 1421 ms, measure time = 107 ms (allowed 150 ms), total time = 1528 ms
17-03-18 04:00:30.924 -07 000000561 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-18 04:00:30.974 -07 000000561 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1580 ms
17-03-18 04:00:30.974 -07 000000561 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:00:30.974 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:00:30.974 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:00:30.974 -07 000000625 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:00:30.974 -07 000000437 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:00:30.974 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:00:30.974 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:00:30.984 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:00:30.984 -07 000000437 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:00:30.984 -07 000000437 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 04:00:30.984 -07 000000437 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:00:30.994 -07 000000437 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 04:00:30.994 -07 000000437 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-18 04:00:31.004 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:00:31.044 -07 000000590 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:00:31.344 -07 000000625 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:00:31.344 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:00:31.344 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:00:31.344 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1201016592, 0x0, 559484976) start.
17-03-18 04:00:31.384 -07 000000579 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:00:31.384 -07 000000512 INF: FPGA: Recv CAMSNAP
17-03-18 04:00:31.384 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 375 ms to get response, and 384 ms overall
17-03-18 04:00:31.464 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1201016592, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 04:00:31.464 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:00:31.464 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 04:00:31.464 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 04:00:31.484 -07 000000437 INF: Autofocus start
17-03-18 04:00:31.484 -07 000000437 INF: MeasureProfile start
17-03-18 04:00:31.484 -07 000000012 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:00:31.484 -07 000000480 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:00:31.494 -07 000000012 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:00:31.494 -07 000000012 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:00:31.494 -07 000000437 INF: MeasureProfile done
17-03-18 04:00:31.494 -07 000000437 INF: X=16  Z correction [um]=0.0530179
17-03-18 04:00:31.494 -07 000000437 INF: Autofocus finished
17-03-18 04:00:31.624 -07 000000437 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:00:31.624 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 118. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1701, R2=1769, Total=3470. Warn if over 250 bubbles per interval.
17-03-18 04:00:31.694 -07 000000561 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:00:31.694 -07 000000012 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:00:31.694 -07 000000610 INF: ------------ Scan Snapping tile 19 at Y-position 74.83203125, Z-position -0.133274563688925. ----------
17-03-18 04:00:31.694 -07 000000610 INF: Cycle	119	Tile	19	Exposure Settings		A	413	G	199	T	199	C	413
17-03-18 04:00:31.704 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27638, sync = True, waitForSettling = True)
17-03-18 04:00:31.704 -07 000000610 INF: Z Motor: Moving to -0.126519 mm, started at -0.133275 mm, distance = 6.76 um
17-03-18 04:00:31.704 -07 000000610 INF: FPGA: Xmit ZDACW 27638\n [Z Motor]
17-03-18 04:00:31.704 -07 000000512 INF: FPGA: Recv ZDACW
17-03-18 04:00:31.714 -07 000000610 INF: FPGA: 'ZDACW 27638' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:00:31.714 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:00:31.714 -07 000000480 INF: FPGA: Recv ZDACR 27638
17-03-18 04:00:31.724 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:00:31.724 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:00:31.874 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:00:31.874 -07 000000618 INF: FPGA: Recv ZSGSRD 28983
17-03-18 04:00:31.884 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:00:31.884 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:00:31.884 -07 000000625 INF: FPGA: Recv ZSGSRD 28981
17-03-18 04:00:31.894 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:00:31.894 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:00:31.894 -07 000000590 INF: FPGA: Recv ZSGSRD 28984
17-03-18 04:00:31.904 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 04:00:31.904 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:00:31.904 -07 000000561 INF: FPGA: Recv ZSGSRD 28986
17-03-18 04:00:31.914 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:00:31.914 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:00:31.914 -07 000000625 INF: FPGA: Recv ZSGSRD 28987
17-03-18 04:00:31.924 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:00:31.924 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:00:31.924 -07 000000618 INF: FPGA: Recv ZSGSRD 28985
17-03-18 04:00:31.934 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:00:31.934 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:00:31.934 -07 000000512 INF: FPGA: Recv ZSGSRD 28985
17-03-18 04:00:31.944 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:00:31.944 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:00:31.944 -07 000000012 INF: FPGA: Recv ZSGSRD 28984
17-03-18 04:00:31.954 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:00:31.954 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:00:31.954 -07 000000625 INF: FPGA: Recv ZSGSRD 28986
17-03-18 04:00:31.964 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:00:31.964 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:00:31.964 -07 000000625 INF: FPGA: Recv ZSGSRD 28988
17-03-18 04:00:31.974 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:00:31.974 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:00:31.974 -07 000000512 INF: FPGA: Recv ZPIEZORD 24419
17-03-18 04:00:31.984 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:00:31.984 -07 000000610 INF: Z Motor: Piezo is near 32.2 V (nominally 0 to 100 V), expect near 42.2 V, since DAC is at 4.217 V. Piezo Error = -10.0 V.
17-03-18 04:00:31.984 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -126.5 um, Read 10 ADC samples: Avg = 28985 (-125.8 uncal um), Error = 0.8 uncal um, Median = 28985 (-125.8 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 28981 (-125.7 uncal um), Max = 28988 (-125.8 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 04:00:31.984 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 28985, posNoise = 3, negNoise = 4
17-03-18 04:00:31.984 -07 000000610 INF: Z Motor: After move to -0.126519, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:00:31.984 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-18 04:00:31.984 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:00:31.984 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:00:31.984 -07 000000012 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:00:31.984 -07 000000579 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:00:31.984 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:00:31.984 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:00:31.984 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:00:31.984 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:00:31.984 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:00:31.984 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:00:31.984 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:00:31.984 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:00:31.994 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 04:00:31.994 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:00:31.994 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 04:00:31.994 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:00:31.994 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 04:00:31.994 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 04:00:32.004 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 11 ms.
17-03-18 04:00:32.004 -07 000000579 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 04:00:32.004 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 413 413 199 199 27814 150\n [Camera]
17-03-18 04:00:32.204 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:00:32.614 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 605
17-03-18 04:00:32.614 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 605
17-03-18 04:00:32.614 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:00:32.614 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:00:32.624 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-18 04:00:32.624 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 605
17-03-18 04:00:32.624 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 605
17-03-18 04:00:32.624 -07 000000625 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:00:32.624 -07 000000625 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:00:32.624 -07 000000625 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) start.
17-03-18 04:00:32.804 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 27814 798
17-03-18 04:00:32.954 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP turning grn on 948
17-03-18 04:00:32.994 -07 000000625 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) end. Duration was 371 ms.
17-03-18 04:00:32.994 -07 000000625 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 372 ms.
17-03-18 04:00:32.994 -07 000000625 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:00:32.994 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 376 ms.
17-03-18 04:00:32.994 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-18 04:00:32.994 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:00:33.004 -07 000000625 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 04:00:33.004 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:00:33.004 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-18 04:00:33.004 -07 000000625 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-18 04:00:33.154 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1147
17-03-18 04:00:33.154 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1147
17-03-18 04:00:33.154 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:00:33.154 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:00:33.154 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-18 04:00:33.164 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1147
17-03-18 04:00:33.164 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1147
17-03-18 04:00:33.164 -07 000000625 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:00:33.164 -07 000000625 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:00:33.164 -07 000000625 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) start.
17-03-18 04:00:33.344 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP 1340
17-03-18 04:00:33.354 -07 000000618 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:00:33.354 -07 000000610 INF: FPGA: 'CAMDBLSNAP 413 413 199 199 27814 150' command took 2 ms to send, 1340 ms to get response, and 1346 ms overall
17-03-18 04:00:33.554 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 397 ms.
17-03-18 04:00:33.554 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 04:00:33.554 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:00:33.564 -07 000000625 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) end. Duration was 397 ms.
17-03-18 04:00:33.564 -07 000000625 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-18 04:00:33.564 -07 000000625 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:00:33.564 -07 000000625 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:00:33.564 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 04:00:33.564 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-18 04:00:33.564 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) start.
17-03-18 04:00:33.574 -07 000000625 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-18 04:00:33.604 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) end. Duration was 42 ms.
17-03-18 04:00:33.604 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) start.
17-03-18 04:00:33.654 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) end. Duration was 42 ms.
17-03-18 04:00:33.664 -07 000000610 INF: Enabling Skipping AutoFocus in the next 2 cycles.
17-03-18 04:00:33.664 -07 000000610 INF: Imaging Cycle 119: ScanTilesCommand Cycle 119 time end. Duration was 165144 ms.
17-03-18 04:00:33.664 -07 000000610 INF: =================== Cycle #119 ===================
17-03-18 04:00:33.664 -07 000000610 INF: ===================  ===================
17-03-18 04:00:33.664 -07 000000512 INF: FPGA: Xmit EXLED1ADCR\n [GreenLED]
17-03-18 04:00:33.674 -07 000000618 INF: FPGA: Recv EXLED1ADCR 31
17-03-18 04:00:33.674 -07 000000512 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 04:00:33.674 -07 000000512 INF: GreenLED: Using Green data: Photodiode ADC 31 --> 0.0 mW (old method), or 2.4 mW (new method). Difference = 2.4 mW
17-03-18 04:00:33.674 -07 000000512 INF: Predictive Diagnostic Log Cycle Entry Metrics: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 119, FrontChillerTemperature: 3.988112, FrontChillerHeatSinkTemperature: 0.407199, AmbientTemperature: 18.62668, FlowCellCompartmentTemperature: 21.99836, FlowCellTargetTemperature: 22, FlowCellHeatSinkTemperature: 18.35965, GreenLEDSensorTemperature: 27.17493, PhotodiodePowerAdcGreen: 31, PhotodiodePowerMwGreen: 2.382977
17-03-18 04:00:33.764 -07 000000610 INF: Y-Drift Offset assigned 0.002126916.