17-03-17 18:13:54.278 -07 000000610 INF: =================== Cycle #11 ===================
17-03-17 18:13:54.278 -07 000000610 INF: Y Motor: Entering MoveAbsStepped (target = 120609 steps, sync = True, waitForSettling = True)
17-03-17 18:13:54.278 -07 000000610 INF: Y Motor: Moving to 75.3806 mm, started at 74.8330 mm, delta = 0.5476 mm
17-03-17 18:13:54.278 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:13:54.288 -07 000000459 INF: FPGA: Recv YRDPOS 153258
17-03-17 18:13:54.288 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 2 ms overall
17-03-17 18:13:54.288 -07 000000610 INF: Y Motor: Encoder = 153258 = motor step 119732.8 = 74.8330 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:13:54.288 -07 000000610 INF: Y Motor: Last commanded position = 74.8526 mm (119764.2 steps), delta from last commanded position = 0.5280 mm (844.8 steps). UsingTableMove = False
17-03-17 18:13:54.288 -07 000000610 INF: Y Motor: Moving to 154379 encoder counts
17-03-17 18:13:54.288 -07 000000610 INF: FPGA: Xmit YMVTO 154379\n [Y Motor]
17-03-17 18:13:54.398 -07 000000626 INF: FPGA: Recv YMVTO 154377 871
17-03-17 18:13:54.398 -07 000000610 INF: FPGA: 'YMVTO 154379' command took 0 ms to send, 109 ms to get response, and 116 ms overall
17-03-17 18:13:54.398 -07 000000610 INF: Y Motor: Position error before settling = -2 encoder counts (-0.001 mm)
17-03-17 18:13:54.398 -07 000000610 INF: Y Motor: To move from 74.833 to 75.381 (0.548 mm) should take 876 steps, but required 871 steps (0.544 mm). Slippage = -0.003 mm (-0.01%).
17-03-17 18:13:54.398 -07 000000610 INF: Y Motor: FPGA move command 'YMVTO 154379' took 116 ms, distance = 0.548 mm, average velocity = 4.720 mm/sec
17-03-17 18:13:56.568 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:13:56.568 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 10. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=90, R2=99, Total=189. Warn if over 250 bubbles per interval.
17-03-17 18:13:57.118 -07 000000459 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 11, FrontChillerTemperature: 4.008536,
17-03-17 18:13:57.398 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:13:57.398 -07 000000424 INF: FPGA: Recv YRDPOS 154380
17-03-17 18:13:57.408 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:13:57.408 -07 000000610 INF: Y Motor: Encoder = 154380 = motor step 120609.4 = 75.3809 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:13:57.418 -07 000000610 INF: Y Motor: After move to 75.380580, error = 0.000279, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:13:57.418 -07 000000610 INF: Y Motor: Position error after settling = 1 encoder counts (0.000 mm), Delta during settling = 3 counts (0.001 mm)
17-03-17 18:13:57.418 -07 000000610 INF: Y Motor: Moved to 75.3809 after 3134 ms
17-03-17 18:13:57.418 -07 000000610 INF: =================== Cycle #11, Flow Cell Temp 60° ===================
17-03-17 18:13:57.428 -07 000000610 INF: =================== Cycle #11, Flow Cell Temp 60°, FC temperature to 60° ===================
17-03-17 18:13:57.668 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-17 18:13:57.678 -07 000000433 INF: FPGA: Recv TEC2EN 
17-03-17 18:13:57.678 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 2 ms to get response, and 2 ms overall
17-03-17 18:13:57.678 -07 000000610 INF: =================== Cycle #11, Flow Cell Temp 60° ===================
17-03-17 18:13:57.678 -07 000000610 INF: =================== Cycle #11 ===================
17-03-17 18:13:57.678 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 18:13:57.678 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 18:13:57.708 -07 000000610 INF: ReagentValve: Recv 18\r
17-03-17 18:13:57.708 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 24 to 3. Moving 3 positions.
17-03-17 18:13:57.708 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-17 18:13:58.008 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 18:13:58.028 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-17 18:13:58.028 -07 000000610 INF: ReagentValve: Move+ from 24 to 3 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-17 18:13:58.078 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 18:13:58.098 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 18:13:58.098 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 18:13:58.198 -07 000000610 INF: =================== Cycle #11, Pumping Reagent PR2 (3) ===================
17-03-17 18:13:58.198 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1
17-03-17 18:13:58.248 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:13:58.278 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-17 18:13:58.278 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-17 18:13:58.278 -07 000000610 INF: =================== Cycle #11, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 18:13:58.408 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r
17-03-17 18:13:58.448 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:14:01.568 -07 000000593 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 2 R1 2
17-03-17 18:14:01.568 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 10. Bubbles during last 5000 ms interval: R1=2, R2=2, Total=4. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=92, R2=101, Total=193. Warn if over 250 bubbles per interval.
17-03-17 18:14:01.578 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:14:01.608 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:14:02.028 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:14:02.058 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:14:02.478 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:14:02.478 -07 000000627 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 11, FrontChillerTemperature: 4.000345,
17-03-17 18:14:02.508 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:14:02.508 -07 000000610 INF: LanePump: Waited 4059 ms for pump motion to complete
17-03-17 18:14:02.508 -07 000000610 INF: =================== Cycle #11, Pumping Reagent PR2 (3) ===================
17-03-17 18:14:02.638 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:14:02.668 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 18:14:02.668 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 18:14:02.798 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:14:02.828 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 18:14:02.828 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 18:14:02.828 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 18:14:02.958 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 18:14:02.988 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:14:03.418 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:14:03.448 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:14:03.448 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 18:14:03.448 -07 000000610 INF: =================== Cycle #11 ===================
17-03-17 18:14:04.668 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-17 18:14:04.668 -07 000000610 INF: ReagentValve: Go to position 4 - PumpToFlowcell start
17-03-17 18:14:04.668 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 18:14:04.688 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 18:14:04.688 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 3 to 4. Moving 1 positions.
17-03-17 18:14:04.688 -07 000000610 INF: ReagentValve: Xmit +04\r
17-03-17 18:14:04.828 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 18:14:04.848 -07 000000610 INF: ReagentValve: Recv 00CD\r
17-03-17 18:14:04.848 -07 000000610 INF: ReagentValve: Move+ from 3 to 4 took 205 steps, expected 204. Error = 1 steps (0.5%)
17-03-17 18:14:04.898 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 18:14:04.918 -07 000000610 INF: ReagentValve: Recv 04\r
17-03-17 18:14:04.918 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 18:14:05.018 -07 000000610 INF: =================== Cycle #11, Pumping Reagent CMS (4) ===================
17-03-17 18:14:05.018 -07 000000610 INF: LanePump: Pumping from 4, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-17 18:14:05.018 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:14:05.048 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 18:14:05.048 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 18:14:05.048 -07 000000610 INF: =================== Cycle #11, Pumping Reagent CMS (4), Aspirating port InputPort ===================
17-03-17 18:14:05.178 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-17 18:14:05.218 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:14:06.568 -07 000000618 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:14:06.568 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 10. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=92, R2=101, Total=193. Warn if over 250 bubbles per interval.
17-03-17 18:14:06.658 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:14:06.688 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:14:07.108 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:14:07.138 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:14:07.138 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-17 18:14:07.138 -07 000000610 INF: =================== Cycle #11, Pumping Reagent CMS (4) ===================
17-03-17 18:14:07.268 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:14:07.298 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 18:14:07.298 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 18:14:07.428 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:14:07.458 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 18:14:07.458 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 18:14:07.458 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 18:14:07.588 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 18:14:07.618 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:14:07.838 -07 000000501 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 11, FrontChillerTemperature: 4.009895,
17-03-17 18:14:08.048 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:14:08.078 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:14:08.078 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 18:14:08.078 -07 000000610 INF: =================== Cycle #11 ===================
17-03-17 18:14:09.298 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-17 18:14:09.298 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 18:14:09.298 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 18:14:09.318 -07 000000610 INF: ReagentValve: Recv 04\r
17-03-17 18:14:09.318 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 4 to 3. Moving 1 positions.
17-03-17 18:14:09.318 -07 000000610 INF: ReagentValve: Xmit -03\r
17-03-17 18:14:09.468 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 18:14:09.488 -07 000000610 INF: ReagentValve: Recv 00E1\r
17-03-17 18:14:09.488 -07 000000610 INF: ReagentValve: Move- from 4 to 3 took 225 steps, expected 204. Error = 21 steps (10.3%)
17-03-17 18:14:09.538 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 18:14:09.558 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 18:14:09.558 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 18:14:09.658 -07 000000610 INF: =================== Cycle #11, Pumping Reagent PR2 (3) ===================
17-03-17 18:14:09.658 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-17 18:14:09.658 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:14:09.688 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 18:14:09.688 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 18:14:09.688 -07 000000610 INF: =================== Cycle #11, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 18:14:09.818 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-17 18:14:09.858 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:14:10.728 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:14:10.758 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:14:10.758 -07 000000610 INF: LanePump: Waited 900 ms for pump motion to complete
17-03-17 18:14:10.758 -07 000000610 INF: =================== Cycle #11, Pumping Reagent PR2 (3) ===================
17-03-17 18:14:10.888 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:14:10.918 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 18:14:10.918 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 18:14:11.048 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:14:11.078 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 18:14:11.078 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 18:14:11.078 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 18:14:11.208 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 18:14:11.238 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:14:11.568 -07 000000433 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:14:11.568 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 10. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=92, R2=101, Total=193. Warn if over 250 bubbles per interval.
17-03-17 18:14:11.668 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:14:11.698 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:14:11.698 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 18:14:11.698 -07 000000610 INF: =================== Cycle #11 ===================
17-03-17 18:14:11.698 -07 000000433 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 18:14:11.698 -07 000000501 INF: WaitCommand(10000) start
17-03-17 18:14:11.698 -07 000000433 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-17 18:14:12.918 -07 000000433 INF: AsyncDelayTimer waited 1214ms
17-03-17 18:14:12.918 -07 000000433 INF: LanePump: Xmit /1?\r
17-03-17 18:14:12.948 -07 000000433 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 18:14:12.948 -07 000000433 INF: LanePump: Current Position of Pump is: 1110
17-03-17 18:14:13.078 -07 000000433 INF: LanePump: Xmit /1V1500OA0R\r
17-03-17 18:14:13.118 -07 000000433 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:14:13.198 -07 000000502 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 11, FrontChillerTemperature: 3.993549,
17-03-17 18:14:14.648 -07 000000433 INF: LanePump: Xmit /1Q\r
17-03-17 18:14:14.678 -07 000000433 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:14:15.098 -07 000000433 INF: LanePump: Xmit /1Q\r
17-03-17 18:14:15.128 -07 000000433 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:14:15.128 -07 000000433 INF: LanePump: Waited 2009 ms for pump motion to complete
17-03-17 18:14:15.128 -07 000000433 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 18:14:15.128 -07 000000433 INF: ===================  ===================
17-03-17 18:14:16.568 -07 000000569 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:14:16.568 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 10. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=92, R2=101, Total=193. Warn if over 250 bubbles per interval.
17-03-17 18:14:18.558 -07 000000608 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 11, FrontChillerTemperature: 3.983999,
17-03-17 18:14:21.568 -07 000000608 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:14:21.578 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 10. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=92, R2=101, Total=193. Warn if over 250 bubbles per interval.
17-03-17 18:14:21.708 -07 000000501 INF: WaitCommand(10000) end
17-03-17 18:14:21.708 -07 000000610 INF: =================== Cycle #11, Pumping Reagent PR2 (3) ===================
17-03-17 18:14:21.708 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 250 µL, calling command Pumping to Flow Cell #1
17-03-17 18:14:21.708 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:14:21.738 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-17 18:14:21.738 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-17 18:14:21.738 -07 000000610 INF: =================== Cycle #11, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 18:14:21.868 -07 000000610 INF: LanePump: Xmit /1V400IP1500R\r
17-03-17 18:14:21.908 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:14:23.918 -07 000000459 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 11, FrontChillerTemperature: 4.015368,
17-03-17 18:14:26.568 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 1
17-03-17 18:14:26.578 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 10. Bubbles during last 5000 ms interval: R1=1, R2=1, Total=2. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=93, R2=102, Total=195. Warn if over 250 bubbles per interval.
17-03-17 18:14:28.038 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:14:28.068 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:14:28.488 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:14:28.518 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:14:28.938 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:14:28.968 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:14:29.278 -07 000000459 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 11, FrontChillerTemperature: 4.007176,
17-03-17 18:14:29.388 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:14:29.418 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:14:29.838 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:14:29.868 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:14:29.868 -07 000000610 INF: LanePump: Waited 7959 ms for pump motion to complete
17-03-17 18:14:29.868 -07 000000610 INF: =================== Cycle #11, Pumping Reagent PR2 (3) ===================
17-03-17 18:14:29.998 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:14:30.698 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-17 18:14:30.698 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-17 18:14:30.828 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:14:30.858 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-17 18:14:30.858 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-17 18:14:30.858 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 18:14:30.988 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 18:14:31.018 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:14:31.448 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:14:31.478 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:14:31.478 -07 000000610 INF: LanePump: Waited 461 ms for pump motion to complete
17-03-17 18:14:31.478 -07 000000610 INF: =================== Cycle #11 ===================
17-03-17 18:14:31.578 -07 000000501 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:14:31.578 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 10. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=93, R2=102, Total=195. Warn if over 250 bubbles per interval.
17-03-17 18:14:32.698 -07 000000610 INF: AsyncDelayTimer waited 1217ms
17-03-17 18:14:32.698 -07 000000610 INF: ReagentValve: Go to position 1 - PumpToFlowcell start
17-03-17 18:14:32.698 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 18:14:32.718 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 18:14:32.718 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 1. Moving 2 positions.
17-03-17 18:14:32.718 -07 000000610 INF: ReagentValve: Xmit -01\r
17-03-17 18:14:32.928 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 18:14:32.948 -07 000000610 INF: ReagentValve: Recv 0198\r
17-03-17 18:14:32.948 -07 000000610 INF: ReagentValve: Move- from 3 to 1 took 408 steps, expected 408. Error = 0 steps (0.0%)
17-03-17 18:14:32.998 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 18:14:33.018 -07 000000610 INF: ReagentValve: Recv 01\r
17-03-17 18:14:33.018 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 18:14:33.118 -07 000000610 INF: =================== Cycle #11, Pumping Reagent IMT (1) ===================
17-03-17 18:14:33.118 -07 000000610 INF: LanePump: Pumping from 1, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-17 18:14:33.118 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:14:33.148 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-17 18:14:33.148 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-17 18:14:33.148 -07 000000610 INF: =================== Cycle #11, Pumping Reagent IMT (1), Aspirating port InputPort ===================
17-03-17 18:14:33.278 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-17 18:14:33.318 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:14:34.638 -07 000000608 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 11, FrontChillerTemperature: 3.988112,
17-03-17 18:14:34.758 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:14:34.788 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:14:35.208 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:14:35.238 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:14:35.238 -07 000000610 INF: LanePump: Waited 1920 ms for pump motion to complete
17-03-17 18:14:35.238 -07 000000610 INF: =================== Cycle #11, Pumping Reagent IMT (1) ===================
17-03-17 18:14:35.368 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:14:35.398 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-17 18:14:35.398 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-17 18:14:35.528 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:14:35.558 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-17 18:14:35.558 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-17 18:14:35.558 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 18:14:35.688 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 18:14:35.718 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:14:36.148 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:14:36.178 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:14:36.178 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 18:14:36.178 -07 000000610 INF: =================== Cycle #11 ===================
17-03-17 18:14:36.578 -07 000000433 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:14:36.578 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 10. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=93, R2=102, Total=195. Warn if over 250 bubbles per interval.
17-03-17 18:14:37.398 -07 000000610 INF: AsyncDelayTimer waited 1218ms
17-03-17 18:14:37.398 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 18:14:37.398 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 18:14:37.418 -07 000000610 INF: ReagentValve: Recv 01\r
17-03-17 18:14:37.418 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 1 to 3. Moving 2 positions.
17-03-17 18:14:37.418 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-17 18:14:37.648 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 18:14:37.668 -07 000000610 INF: ReagentValve: Recv 01AC\r
17-03-17 18:14:37.668 -07 000000610 INF: ReagentValve: Move+ from 1 to 3 took 428 steps, expected 408. Error = 20 steps (4.9%)
17-03-17 18:14:37.718 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 18:14:37.738 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 18:14:37.738 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 18:14:37.838 -07 000000610 INF: =================== Cycle #11, Pumping Reagent PR2 (3) ===================
17-03-17 18:14:37.838 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-17 18:14:37.838 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:14:37.878 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-17 18:14:37.878 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-17 18:14:37.878 -07 000000610 INF: =================== Cycle #11, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 18:14:38.008 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-17 18:14:38.048 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:14:38.918 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:14:38.948 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:14:38.948 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-17 18:14:38.948 -07 000000610 INF: =================== Cycle #11, Pumping Reagent PR2 (3) ===================
17-03-17 18:14:39.078 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:14:39.108 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-17 18:14:39.108 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-17 18:14:39.238 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:14:39.268 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-17 18:14:39.268 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-17 18:14:39.268 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 18:14:39.398 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 18:14:39.428 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:14:39.858 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:14:39.888 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:14:39.888 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 18:14:39.888 -07 000000610 INF: =================== Cycle #11 ===================
17-03-17 18:14:39.888 -07 000000610 INF: =================== Cycle #11, Flow Cell Temp 65° ===================
17-03-17 18:14:39.888 -07 000000610 INF: =================== Cycle #11, Flow Cell Temp 65°, FC temperature to 65° ===================
17-03-17 18:14:39.888 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 65000000\n [FlowCellTempControl]
17-03-17 18:14:39.888 -07 000000608 INF: FPGA: Recv TEC2TEMP 
17-03-17 18:14:39.898 -07 000000610 INF: FPGA: 'TEC2TEMP 0 65000000' command took 1 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:14:39.928 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-17 18:14:39.928 -07 000000433 INF: FPGA: Recv TEC2EN 
17-03-17 18:14:39.938 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 18:14:39.938 -07 000000610 INF: =================== Cycle #11, Flow Cell Temp 65° ===================
17-03-17 18:14:39.938 -07 000000610 INF: =================== Cycle #11 ===================
17-03-17 18:14:39.938 -07 000000610 INF: WaitCommand(30000) start
17-03-17 18:14:39.998 -07 000000608 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 11, FrontChillerTemperature: 4.023489,
17-03-17 18:14:41.578 -07 000000501 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:14:41.578 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 10. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=93, R2=102, Total=195. Warn if over 250 bubbles per interval.
17-03-17 18:14:45.358 -07 000000618 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 11, FrontChillerTemperature: 4.011254,
17-03-17 18:14:46.578 -07 000000608 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:14:46.578 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 10. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=93, R2=102, Total=195. Warn if over 250 bubbles per interval.
17-03-17 18:14:50.718 -07 000000608 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 11, FrontChillerTemperature: 4.001704,
17-03-17 18:14:51.578 -07 000000459 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:14:51.578 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 10. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=93, R2=102, Total=195. Warn if over 250 bubbles per interval.
17-03-17 18:14:56.078 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 11, FrontChillerTemperature: 3.98264,
17-03-17 18:14:56.578 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:14:56.578 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 10. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=93, R2=102, Total=195. Warn if over 250 bubbles per interval.
17-03-17 18:15:01.438 -07 000000608 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 11, FrontChillerTemperature: 3.98264,
17-03-17 18:15:01.578 -07 000000627 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:15:01.578 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 10. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=93, R2=102, Total=195. Warn if over 250 bubbles per interval.
17-03-17 18:15:06.578 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:15:06.578 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 10. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=93, R2=102, Total=195. Warn if over 250 bubbles per interval.
17-03-17 18:15:06.798 -07 000000459 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 11, FrontChillerTemperature: 3.988112,
17-03-17 18:15:09.948 -07 000000610 INF: WaitCommand(30000) end
17-03-17 18:15:09.948 -07 000000610 INF: =================== Cycle #11, Pumping Reagent PR2 (3) ===================
17-03-17 18:15:09.948 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 5 µL, calling command Pumping to Flow Cell #1
17-03-17 18:15:10.018 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:15:10.048 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-17 18:15:10.048 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-17 18:15:10.048 -07 000000610 INF: =================== Cycle #11, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 18:15:10.178 -07 000000610 INF: LanePump: Xmit /1V400IP30R\r
17-03-17 18:15:10.218 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:15:10.758 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:15:10.788 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:15:10.788 -07 000000610 INF: LanePump: Waited 569 ms for pump motion to complete
17-03-17 18:15:10.788 -07 000000610 INF: =================== Cycle #11, Pumping Reagent PR2 (3) ===================
17-03-17 18:15:10.918 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:15:10.948 -07 000000610 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-17 18:15:10.948 -07 000000610 INF: LanePump: Current Position of Pump is: 1920
17-03-17 18:15:11.078 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:15:11.108 -07 000000610 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-17 18:15:11.108 -07 000000610 INF: LanePump: Current Position of Pump is: 1920
17-03-17 18:15:11.108 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 18:15:11.238 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 18:15:11.268 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:15:11.578 -07 000000627 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:15:11.578 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 10. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=93, R2=102, Total=195. Warn if over 250 bubbles per interval.
17-03-17 18:15:11.698 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:15:11.728 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:15:11.728 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 18:15:11.728 -07 000000610 INF: =================== Cycle #11 ===================
17-03-17 18:15:11.728 -07 000000627 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 18:15:11.728 -07 000000627 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-17 18:15:12.348 -07 000000433 INF: WaitCommand(30000) start
17-03-17 18:15:12.948 -07 000000627 INF: AsyncDelayTimer waited 1215ms
17-03-17 18:15:12.948 -07 000000627 INF: LanePump: Xmit /1?\r
17-03-17 18:15:12.978 -07 000000627 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-17 18:15:12.978 -07 000000627 INF: LanePump: Current Position of Pump is: 1920
17-03-17 18:15:13.108 -07 000000627 INF: LanePump: Xmit /1V1500OA0R\r
17-03-17 18:15:13.148 -07 000000627 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:15:13.188 -07 000000502 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 11, FrontChillerTemperature: 3.985358,
17-03-17 18:15:15.488 -07 000000627 INF: LanePump: Xmit /1Q\r
17-03-17 18:15:15.518 -07 000000627 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:15:15.938 -07 000000627 INF: LanePump: Xmit /1Q\r
17-03-17 18:15:15.968 -07 000000627 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:15:15.968 -07 000000627 INF: LanePump: Waited 2819 ms for pump motion to complete
17-03-17 18:15:15.968 -07 000000627 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 18:15:15.968 -07 000000627 INF: ===================  ===================
17-03-17 18:15:16.578 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:15:16.578 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 10. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=93, R2=102, Total=195. Warn if over 250 bubbles per interval.
17-03-17 18:15:18.548 -07 000000618 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 11, FrontChillerTemperature: 4.027603,
17-03-17 18:15:21.578 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:15:21.578 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 10. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=93, R2=102, Total=195. Warn if over 250 bubbles per interval.
17-03-17 18:15:23.918 -07 000000618 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 11, FrontChillerTemperature: 4.031682,
17-03-17 18:15:26.578 -07 000000627 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:15:26.578 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 10. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=93, R2=102, Total=195. Warn if over 250 bubbles per interval.
17-03-17 18:15:29.288 -07 000000627 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 11, FrontChillerTemperature: 4.02213,
17-03-17 18:15:31.578 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:15:31.578 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 10. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=93, R2=102, Total=195. Warn if over 250 bubbles per interval.
17-03-17 18:15:34.658 -07 000000569 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 11, FrontChillerTemperature: 4.008536,
17-03-17 18:15:36.578 -07 000000569 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:15:36.578 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 10. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=93, R2=102, Total=195. Warn if over 250 bubbles per interval.
17-03-17 18:15:40.028 -07 000000502 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 11, FrontChillerTemperature: 3.983999,
17-03-17 18:15:41.578 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:15:41.578 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 10. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=93, R2=102, Total=195. Warn if over 250 bubbles per interval.
17-03-17 18:15:42.358 -07 000000433 INF: WaitCommand(30000) end
17-03-17 18:15:42.358 -07 000000610 INF: =================== Cycle #11, Flow Cell Temp 22° ===================
17-03-17 18:15:42.358 -07 000000610 INF: =================== Cycle #11, Flow Cell Temp 22°, FC temperature to 22° ===================
17-03-17 18:15:42.358 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 22000000\n [FlowCellTempControl]
17-03-17 18:15:42.358 -07 000000433 INF: FPGA: Recv TEC2TEMP 
17-03-17 18:15:42.368 -07 000000610 INF: FPGA: 'TEC2TEMP 0 22000000' command took 1 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:15:42.368 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-17 18:15:42.368 -07 000000626 INF: FPGA: Recv TEC2EN 
17-03-17 18:15:42.378 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:15:42.378 -07 000000610 INF: =================== Cycle #11, Flow Cell Temp 22° ===================
17-03-17 18:15:42.378 -07 000000610 INF: =================== Cycle #11 ===================
17-03-17 18:15:42.378 -07 000000610 INF: =================== Cycle #11, Pumping Reagent PR2 (3) ===================
17-03-17 18:15:42.378 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1
17-03-17 18:15:42.378 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:15:42.418 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-17 18:15:42.418 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-17 18:15:42.418 -07 000000610 INF: =================== Cycle #11, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 18:15:42.548 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r
17-03-17 18:15:42.588 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:15:45.398 -07 000000618 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 11, FrontChillerTemperature: 3.966297,
17-03-17 18:15:45.718 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:15:45.748 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:15:46.168 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:15:46.198 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:15:46.578 -07 000000569 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:15:46.578 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 10. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=93, R2=102, Total=195. Warn if over 250 bubbles per interval.
17-03-17 18:15:46.618 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:15:46.648 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:15:46.648 -07 000000610 INF: LanePump: Waited 4059 ms for pump motion to complete
17-03-17 18:15:46.648 -07 000000610 INF: =================== Cycle #11, Pumping Reagent PR2 (3) ===================
17-03-17 18:15:46.778 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:15:46.808 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 18:15:46.808 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 18:15:46.938 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:15:46.968 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 18:15:46.968 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 18:15:46.968 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 18:15:47.098 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 18:15:47.128 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:15:47.558 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:15:47.588 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:15:47.588 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 18:15:47.588 -07 000000610 INF: =================== Cycle #11 ===================
17-03-17 18:15:48.808 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-17 18:15:48.808 -07 000000610 INF: ReagentValve: Go to position 2 - PumpToFlowcell start
17-03-17 18:15:48.808 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 18:15:48.828 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 18:15:48.828 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 2. Moving 1 positions.
17-03-17 18:15:48.828 -07 000000610 INF: ReagentValve: Xmit -02\r
17-03-17 18:15:48.978 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 18:15:48.998 -07 000000610 INF: ReagentValve: Recv 00E3\r
17-03-17 18:15:48.998 -07 000000610 INF: ReagentValve: Move- from 3 to 2 took 227 steps, expected 204. Error = 23 steps (11.3%)
17-03-17 18:15:49.048 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 18:15:49.068 -07 000000610 INF: ReagentValve: Recv 02\r
17-03-17 18:15:49.068 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 18:15:49.168 -07 000000610 INF: =================== Cycle #11, Pumping Reagent USM (2) ===================
17-03-17 18:15:49.168 -07 000000610 INF: LanePump: Pumping from 2, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-17 18:15:49.168 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:15:49.198 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 18:15:49.198 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 18:15:49.198 -07 000000610 INF: =================== Cycle #11, Pumping Reagent USM (2), Aspirating port InputPort ===================
17-03-17 18:15:49.328 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-17 18:15:49.368 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:15:50.758 -07 000000618 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 11, FrontChillerTemperature: 3.969015,
17-03-17 18:15:50.808 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:15:50.838 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:15:51.258 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:15:51.288 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:15:51.288 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-17 18:15:51.288 -07 000000610 INF: =================== Cycle #11, Pumping Reagent USM (2) ===================
17-03-17 18:15:51.418 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:15:51.448 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 18:15:51.448 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 18:15:51.578 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:15:51.578 -07 000000433 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:15:51.578 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 10. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=93, R2=102, Total=195. Warn if over 250 bubbles per interval.
17-03-17 18:15:51.608 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 18:15:51.608 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 18:15:51.608 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 18:15:51.738 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 18:15:51.768 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:15:52.198 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:15:52.228 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:15:52.228 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 18:15:52.228 -07 000000610 INF: =================== Cycle #11 ===================
17-03-17 18:15:53.448 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-17 18:15:53.448 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 18:15:53.448 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 18:15:53.468 -07 000000610 INF: ReagentValve: Recv 02\r
17-03-17 18:15:53.468 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 2 to 3. Moving 1 positions.
17-03-17 18:15:53.468 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-17 18:15:53.618 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 18:15:53.638 -07 000000610 INF: ReagentValve: Recv 00E3\r
17-03-17 18:15:53.638 -07 000000610 INF: ReagentValve: Move+ from 2 to 3 took 227 steps, expected 204. Error = 23 steps (11.3%)
17-03-17 18:15:53.688 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 18:15:53.708 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 18:15:53.708 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 18:15:53.808 -07 000000610 INF: =================== Cycle #11, Pumping Reagent PR2 (3) ===================
17-03-17 18:15:53.808 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-17 18:15:53.808 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:15:53.838 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 18:15:53.838 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 18:15:53.838 -07 000000610 INF: =================== Cycle #11, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 18:15:53.968 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-17 18:15:54.008 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:15:54.878 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:15:54.908 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:15:54.908 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-17 18:15:54.908 -07 000000610 INF: =================== Cycle #11, Pumping Reagent PR2 (3) ===================
17-03-17 18:15:55.038 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:15:55.068 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 18:15:55.068 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 18:15:55.198 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:15:55.228 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 18:15:55.228 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 18:15:55.228 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 18:15:55.358 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 18:15:55.388 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:15:55.818 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:15:55.848 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:15:55.848 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 18:15:55.848 -07 000000610 INF: =================== Cycle #11 ===================
17-03-17 18:15:55.848 -07 000000618 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 18:15:55.848 -07 000000569 INF: WaitCommand(10000) start
17-03-17 18:15:55.848 -07 000000618 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-17 18:15:56.118 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 11, FrontChillerTemperature: 3.993549,
17-03-17 18:15:56.578 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:15:56.578 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 10. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=93, R2=102, Total=195. Warn if over 250 bubbles per interval.
17-03-17 18:15:57.068 -07 000000618 INF: AsyncDelayTimer waited 1215ms
17-03-17 18:15:57.068 -07 000000618 INF: LanePump: Xmit /1?\r
17-03-17 18:15:57.098 -07 000000618 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 18:15:57.098 -07 000000618 INF: LanePump: Current Position of Pump is: 1110
17-03-17 18:15:57.228 -07 000000618 INF: LanePump: Xmit /1V1500OA0R\r
17-03-17 18:15:57.268 -07 000000618 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:15:58.798 -07 000000618 INF: LanePump: Xmit /1Q\r
17-03-17 18:15:58.828 -07 000000618 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:15:59.248 -07 000000618 INF: LanePump: Xmit /1Q\r
17-03-17 18:15:59.278 -07 000000618 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:15:59.278 -07 000000618 INF: LanePump: Waited 2009 ms for pump motion to complete
17-03-17 18:15:59.278 -07 000000618 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 18:15:59.278 -07 000000618 INF: ===================  ===================
17-03-17 18:16:01.478 -07 000000459 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 11, FrontChillerTemperature: 4.007176,
17-03-17 18:16:01.578 -07 000000618 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:16:01.578 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 10. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=93, R2=102, Total=195. Warn if over 250 bubbles per interval.
17-03-17 18:16:05.858 -07 000000569 INF: WaitCommand(10000) end
17-03-17 18:16:05.868 -07 000000610 INF: =================== Cycle #11, Imaging ===================
17-03-17 18:16:05.868 -07 000000610 INF: Imaging Cycle 11: ScanTilesCommand Cycle 11 time start.
17-03-17 18:16:05.868 -07 000000610 INF: ReagentValve: Go to position 24 (Plug) - Start of ScanTilesCommand
17-03-17 18:16:05.868 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 18:16:05.888 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 18:16:05.888 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 24. Moving 3 positions.
17-03-17 18:16:05.888 -07 000000610 INF: ReagentValve: Xmit -18\r
17-03-17 18:16:06.188 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 18:16:06.208 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-17 18:16:06.208 -07 000000610 INF: ReagentValve: Move- from 3 to 24 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-17 18:16:06.258 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 18:16:06.278 -07 000000610 INF: ReagentValve: Recv 18\r
17-03-17 18:16:06.278 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:16:06.278 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:16:06.278 -07 000000459 INF: RedLED: Snapping RedLED at power = 1930.000 mW, snap mode for ~0 ms start.
17-03-17 18:16:06.278 -07 000000459 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:16:06.278 -07 000000459 INF: FPGA: Xmit EXLED1ON\n [RedLED]
17-03-17 18:16:06.288 -07 000000569 INF: FPGA: Recv EXLED1ON 
17-03-17 18:16:06.288 -07 000000459 INF: FPGA: 'EXLED1ON' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 18:16:06.288 -07 000000459 INF: FPGA: Xmit EXLED1ADCR\n [RedLED]
17-03-17 18:16:06.288 -07 000000569 INF: FPGA: Recv EXLED1ADCR 23202
17-03-17 18:16:06.298 -07 000000459 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:16:06.298 -07 000000459 INF: RedLED: Using Red data: Photodiode ADC 23202 --> 7.5 mW (old method), or 205.6 mW (new method). Difference = 198.2 mW
17-03-17 18:16:06.298 -07 000000459 INF: FPGA: Xmit EXLED1OFF\n [RedLED]
17-03-17 18:16:06.298 -07 000000502 INF: FPGA: Recv EXLED1OFF 
17-03-17 18:16:06.308 -07 000000459 INF: FPGA: 'EXLED1OFF' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:16:06.308 -07 000000459 INF: RedLED: LED was on for 18 ms
17-03-17 18:16:06.308 -07 000000459 INF: RedLED: Snapping RedLED at power = 1930.000 mW, snap mode for ~0 ms end. Duration was 28 ms.
17-03-17 18:16:06.308 -07 000000459 INF: GreenLED: Snapping GreenLED at power = 5964.000 mW, snap mode for ~0 ms start.
17-03-17 18:16:06.308 -07 000000459 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:16:06.308 -07 000000459 INF: FPGA: Xmit EXLED2ON\n [GreenLED]
17-03-17 18:16:06.318 -07 000000502 INF: FPGA: Recv EXLED2ON 
17-03-17 18:16:06.318 -07 000000459 INF: FPGA: 'EXLED2ON' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 18:16:06.318 -07 000000459 INF: FPGA: Xmit EXLED1ADCR\n [GreenLED]
17-03-17 18:16:06.318 -07 000000502 INF: FPGA: Recv EXLED1ADCR 2111
17-03-17 18:16:06.328 -07 000000459 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:16:06.328 -07 000000459 INF: GreenLED: Using Green data: Photodiode ADC 2111 --> 0.9 mW (old method), or 183.3 mW (new method). Difference = 182.4 mW
17-03-17 18:16:06.328 -07 000000459 INF: FPGA: Xmit EXLED2OFF\n [GreenLED]
17-03-17 18:16:06.328 -07 000000569 INF: FPGA: Recv EXLED2OFF 
17-03-17 18:16:06.338 -07 000000459 INF: FPGA: 'EXLED2OFF' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:16:06.338 -07 000000459 INF: GreenLED: LED was on for 19 ms
17-03-17 18:16:06.338 -07 000000459 INF: GreenLED: Snapping GreenLED at power = 5964.000 mW, snap mode for ~0 ms end. Duration was 29 ms.
17-03-17 18:16:06.348 -07 000000610 INF: FPGA: Xmit EMCUR 80\n [Compensator]
17-03-17 18:16:06.348 -07 000000433 INF: FPGA: Recv EMCUR 
17-03-17 18:16:06.358 -07 000000610 INF: FPGA: 'EMCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:16:06.358 -07 000000610 INF: FPGA: Xmit EMOUT 20 70\n [Compensator]
17-03-17 18:16:06.578 -07 000000429 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:16:06.578 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 10. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=93, R2=102, Total=195. Warn if over 250 bubbles per interval.
17-03-17 18:16:06.838 -07 000000459 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 11, FrontChillerTemperature: 4.033041,
17-03-17 18:16:06.858 -07 000000433 INF: FPGA: Recv EMOUT
17-03-17 18:16:06.858 -07 000000610 INF: FPGA: 'EMOUT 20 70' command took 0 ms to send, 492 ms to get response, and 502 ms overall
17-03-17 18:16:06.878 -07 000000610 INF: FPGA: Xmit EMCUR 75\n [Compensator]
17-03-17 18:16:06.878 -07 000000433 INF: FPGA: Recv EMCUR 
17-03-17 18:16:06.888 -07 000000610 INF: FPGA: 'EMCUR 75' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-17 18:16:06.888 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 18:16:06.888 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 1 at Y-position 75.380859375, Z-Position -0.127203683214961. ------
17-03-17 18:16:06.888 -07 000000627 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:16:06.888 -07 000000459 INF: Y Motor: MoveYZ optimized starting. Moving Y to 59.9126 mm, moving Z to -0.17925 mm
17-03-17 18:16:06.888 -07 000000459 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:16:06.888 -07 000000433 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True)
17-03-17 18:16:06.888 -07 000000429 INF: Z Motor: Entering MoveAbsStepped (DAC = 39157, sync = True, waitForSettling = False)
17-03-17 18:16:06.888 -07 000000429 INF: Z Motor: Moving to -0.179249 mm, started at -0.127204 mm, distance = -52.05 um
17-03-17 18:16:06.888 -07 000000626 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:16:06.898 -07 000000433 INF: Y Motor: Moving to 59.9126 mm, started at 75.3809 mm, delta = -15.4683 mm
17-03-17 18:16:06.898 -07 000000627 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:16:06.898 -07 000000429 INF: FPGA: Xmit ZDACW 39157\n [Z Motor]
17-03-17 18:16:06.898 -07 000000482 INF: FPGA: Recv ZDACW
17-03-17 18:16:06.908 -07 000000429 INF: FPGA: 'ZDACW 39157' command took 1 ms to send, 0 ms to get response, and 12 ms overall
17-03-17 18:16:06.908 -07 000000429 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:16:06.908 -07 000000569 INF: FPGA: Recv ZDACR 39157
17-03-17 18:16:06.918 -07 000000429 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:16:06.918 -07 000000429 INF: Z Motor: MoveAbsStepped took 22 ms (did NOT wait for settling yet))
17-03-17 18:16:06.918 -07 000000433 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:16:06.918 -07 000000618 INF: FPGA: Recv YRDPOS 154381
17-03-17 18:16:06.928 -07 000000433 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:16:06.928 -07 000000433 INF: Y Motor: Encoder = 154381 = motor step 120610.2 = 75.3813 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:16:06.928 -07 000000627 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:16:06.928 -07 000000433 INF: Y Motor: Last commanded position = 75.3806 mm (120608.9 steps), delta from last commanded position = -15.4680 mm (-24748.8 steps). UsingTableMove = False
17-03-17 18:16:06.928 -07 000000433 INF: Y Motor: Moving to 122701 encoder counts
17-03-17 18:16:06.938 -07 000000433 INF: FPGA: Xmit YMVTO 122701\n [Y Motor]
17-03-17 18:16:07.128 -07 000000626 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:16:07.128 -07 000000627 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 231 ms overall
17-03-17 18:16:08.618 -07 000000569 INF: FPGA: Recv YMVTO 122702 24775
17-03-17 18:16:08.618 -07 000000433 INF: FPGA: 'YMVTO 122701' command took 0 ms to send, 1678 ms to get response, and 1695 ms overall
17-03-17 18:16:08.618 -07 000000433 INF: Y Motor: Position error before settling = 1 encoder counts (0.000 mm)
17-03-17 18:16:08.618 -07 000000433 INF: Y Motor: To move from 75.381 to 59.913 (-15.468 mm) should take 24750 steps, but required 24775 steps (15.484 mm). Slippage = 0.016 mm (0.00%).
17-03-17 18:16:08.618 -07 000000433 INF: Y Motor: FPGA move command 'YMVTO 122701' took 1695 ms, distance = 15.468 mm, average velocity = 9.126 mm/sec
17-03-17 18:16:11.468 -07 000000433 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:16:11.468 -07 000000429 INF: FPGA: Recv YRDPOS 122699
17-03-17 18:16:11.478 -07 000000433 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:16:11.478 -07 000000433 INF: Y Motor: Encoder = 122699 = motor step 95858.6 = 59.9116 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:16:11.498 -07 000000433 INF: Y Motor: After move to 59.912609, error = -0.000988, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:16:11.498 -07 000000433 INF: Y Motor: Position error after settling = -2 encoder counts (-0.001 mm), Delta during settling = -3 counts (-0.001 mm)
17-03-17 18:16:11.498 -07 000000433 INF: Y Motor: Moved to 59.9116 after 4604 ms
17-03-17 18:16:11.498 -07 000000459 INF: Z Motor: EndOfMoveAbsStepped: target = -0.179249 mm (DAC = 39157)
17-03-17 18:16:11.498 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:16:11.498 -07 000000502 INF: FPGA: Recv ZSGSRD 37196
17-03-17 18:16:11.508 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 18:16:11.508 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:16:11.508 -07 000000627 INF: FPGA: Recv ZSGSRD 37193
17-03-17 18:16:11.518 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:16:11.518 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:16:11.518 -07 000000618 INF: FPGA: Recv ZSGSRD 37191
17-03-17 18:16:11.528 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:16:11.528 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:16:11.528 -07 000000618 INF: FPGA: Recv ZSGSRD 37192
17-03-17 18:16:11.538 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:16:11.538 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:16:11.538 -07 000000618 INF: FPGA: Recv ZSGSRD 37192
17-03-17 18:16:11.548 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:16:11.548 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:16:11.548 -07 000000433 INF: FPGA: Recv ZSGSRD 37199
17-03-17 18:16:11.558 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:16:11.558 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:16:11.558 -07 000000627 INF: FPGA: Recv ZSGSRD 37196
17-03-17 18:16:11.568 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:16:11.568 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:16:11.568 -07 000000448 INF: FPGA: Recv ZSGSRD 37190
17-03-17 18:16:11.578 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:16:11.578 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:16:11.578 -07 000000429 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:16:11.578 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 10. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=93, R2=102, Total=195. Warn if over 250 bubbles per interval.
17-03-17 18:16:11.578 -07 000000569 INF: FPGA: Recv ZSGSRD 37199
17-03-17 18:16:11.588 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:16:11.588 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:16:11.588 -07 000000618 INF: FPGA: Recv ZSGSRD 37194
17-03-17 18:16:11.598 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:16:11.598 -07 000000459 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:16:11.598 -07 000000618 INF: FPGA: Recv ZPIEZORD 33526
17-03-17 18:16:11.608 -07 000000459 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:16:11.608 -07 000000459 INF: Z Motor: Piezo is near 51.6 V (nominally 0 to 100 V), expect near 59.7 V, since DAC is at 5.975 V. Piezo Error = -8.1 V.
17-03-17 18:16:11.608 -07 000000459 INF: Z Motor: ReadAdcAverage: Commanded Z = -179.2 um, Read 10 ADC samples: Avg = 37194 (-178.4 uncal um), Error = 0.9 uncal um, Median = 37194 (-178.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 37190 (-178.3 uncal um), Max = 37199 (-178.4 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 18:16:11.608 -07 000000459 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37194, posNoise = 5, negNoise = 4
17-03-17 18:16:11.608 -07 000000459 INF: Z Motor: After move to -0.179249, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:16:11.608 -07 000000459 INF: Z Motor: Settle wait time = 4608 ms, measure time = 106 ms (allowed 150 ms), total time = 4714 ms
17-03-17 18:16:11.608 -07 000000459 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-17 18:16:11.658 -07 000000459 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 4764 ms
17-03-17 18:16:11.658 -07 000000459 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:16:11.658 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:16:11.658 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:16:11.658 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:16:11.658 -07 000000459 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:16:11.668 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:16:11.668 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:16:11.668 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 18:16:11.668 -07 000000618 INF: Camera: sBCa_SetPowerMode(785074288, 1) start.
17-03-17 18:16:11.688 -07 000000618 INF: Camera: sBCa_SetPowerMode(785074288, 1) end. Duration was 19 ms.
17-03-17 18:16:11.688 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:16:11.688 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:16:11.688 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:16:11.698 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 18:16:11.698 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 30 ms.
17-03-17 18:16:11.698 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:16:11.748 -07 000000459 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:16:11.948 -07 000000459 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:16:11.948 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:16:11.948 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:16:11.948 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1092128872, 0x0, 559484976) start.
17-03-17 18:16:11.978 -07 000000618 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:16:11.988 -07 000000618 INF: FPGA: Recv CAMSNAP
17-03-17 18:16:11.988 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 280 ms to get response, and 284 ms overall
17-03-17 18:16:12.058 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1092128872, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 18:16:12.058 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:16:12.058 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 18:16:12.058 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 18:16:12.088 -07 000000459 INF: Image SNR check: start
17-03-17 18:16:12.088 -07 000000618 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:16:12.098 -07 000000459 INF: Image SNR check: pass  [peak (Max-Min)=64.66]
17-03-17 18:16:12.098 -07 000000459 INF: Autofocus start
17-03-17 18:16:12.098 -07 000000459 INF: MeasureProfile start
17-03-17 18:16:12.118 -07 000000459 INF: MeasureProfile done
17-03-17 18:16:12.118 -07 000000459 INF: X=32  Z correction [um]=0.09220707
17-03-17 18:16:12.118 -07 000000459 INF: Autofocus finished
17-03-17 18:16:12.118 -07 000000459 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:16:12.118 -07 000000618 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 25 ms to get response, and 32 ms overall
17-03-17 18:16:12.118 -07 000000618 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:16:12.198 -07 000000459 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 11, FrontChillerTemperature: 4.031682,
17-03-17 18:16:12.318 -07 000000459 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:16:12.318 -07 000000618 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 198 ms to get response, and 202 ms overall
17-03-17 18:16:12.328 -07 000000610 INF: ------------ Scan Snapping tile 1 at Y-position 59.91162109375, Z-position -0.179265498411792. ----------
17-03-17 18:16:12.328 -07 000000610 INF: Cycle	11	Tile	1	Exposure Settings		A	392	G	188	T	188	C	392
17-03-17 18:16:12.328 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37690, sync = True, waitForSettling = True)
17-03-17 18:16:12.328 -07 000000610 INF: Z Motor: Moving to -0.172534 mm, started at -0.179265 mm, distance = 6.73 um
17-03-17 18:16:12.328 -07 000000610 INF: FPGA: Xmit ZDACW 37690\n [Z Motor]
17-03-17 18:16:12.338 -07 000000459 INF: FPGA: Recv ZDACW
17-03-17 18:16:12.348 -07 000000610 INF: FPGA: 'ZDACW 37690' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:16:12.348 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:16:12.348 -07 000000459 INF: FPGA: Recv ZDACR 37690
17-03-17 18:16:12.358 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:16:12.358 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:16:12.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:16:12.508 -07 000000429 INF: FPGA: Recv ZSGSRD 36142
17-03-17 18:16:12.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:16:12.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:16:12.518 -07 000000618 INF: FPGA: Recv ZSGSRD 36148
17-03-17 18:16:12.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:16:12.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:16:12.528 -07 000000459 INF: FPGA: Recv ZSGSRD 36147
17-03-17 18:16:12.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:16:12.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:16:12.538 -07 000000618 INF: FPGA: Recv ZSGSRD 36143
17-03-17 18:16:12.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:16:12.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:16:12.548 -07 000000618 INF: FPGA: Recv ZSGSRD 36152
17-03-17 18:16:12.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:16:12.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:16:12.558 -07 000000618 INF: FPGA: Recv ZSGSRD 36143
17-03-17 18:16:12.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:16:12.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:16:12.568 -07 000000459 INF: FPGA: Recv ZSGSRD 36151
17-03-17 18:16:12.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:16:12.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:16:12.578 -07 000000626 INF: FPGA: Recv ZSGSRD 36150
17-03-17 18:16:12.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:16:12.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:16:12.588 -07 000000618 INF: FPGA: Recv ZSGSRD 36143
17-03-17 18:16:12.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:16:12.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:16:12.598 -07 000000626 INF: FPGA: Recv ZSGSRD 36149
17-03-17 18:16:12.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:16:12.608 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:16:12.608 -07 000000429 INF: FPGA: Recv ZPIEZORD 32106
17-03-17 18:16:12.618 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:16:12.618 -07 000000610 INF: Z Motor: Piezo is near 48.6 V (nominally 0 to 100 V), expect near 57.5 V, since DAC is at 5.751 V. Piezo Error = -8.9 V.
17-03-17 18:16:12.618 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.5 um, Read 10 ADC samples: Avg = 36147 (-171.7 uncal um), Error = 0.9 uncal um, Median = 36148 (-171.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 36142 (-171.6 uncal um), Max = 36152 (-171.7 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 18:16:12.618 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36147, posNoise = 5, negNoise = 5
17-03-17 18:16:12.618 -07 000000610 INF: Z Motor: After move to -0.172534, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:16:12.618 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 18:16:12.618 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:16:12.618 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:16:12.618 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:16:12.618 -07 000000429 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:16:12.618 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:16:12.618 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:16:12.618 -07 000000459 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:16:12.618 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:16:12.618 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:16:12.618 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:16:12.618 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-17 18:16:12.618 -07 000000459 INF: Camera: sBCa_SetPowerMode(785074704, 1) start.
17-03-17 18:16:12.628 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 18:16:12.628 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:16:12.638 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-17 18:16:12.638 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 18:16:12.648 -07 000000459 INF: Camera: sBCa_SetPowerMode(785074704, 1) end. Duration was 20 ms.
17-03-17 18:16:12.648 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:16:12.648 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 18:16:12.648 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:16:12.658 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 18:16:12.658 -07 000000459 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 34 ms.
17-03-17 18:16:12.658 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 392 392 188 188 37866 150\n [Camera]
17-03-17 18:16:12.858 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:16:13.248 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 584
17-03-17 18:16:13.248 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 584
17-03-17 18:16:13.248 -07 000000433 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:16:13.248 -07 000000433 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:16:13.248 -07 000000433 INF: Camera: sBCa_ReadImage(785074288, 644204472, 0x0, 391868352) start.
17-03-17 18:16:13.248 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 584
17-03-17 18:16:13.248 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 584
17-03-17 18:16:13.248 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:16:13.368 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:16:13.368 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 2485095640, 0x0, 418435064) start.
17-03-17 18:16:13.438 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37866 779
17-03-17 18:16:13.588 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning grn on 927
17-03-17 18:16:13.628 -07 000000433 INF: Camera: sBCa_ReadImage(785074288, 644204472, 0x0, 391868352) end. Duration was 380 ms.
17-03-17 18:16:13.628 -07 000000433 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 18:16:13.628 -07 000000433 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:16:13.638 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 18:16:13.638 -07 000000433 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 18:16:13.748 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 2485095640, 0x0, 418435064) end. Duration was 372 ms.
17-03-17 18:16:13.748 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 373 ms.
17-03-17 18:16:13.748 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:16:13.748 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:16:13.758 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 502 ms.
17-03-17 18:16:13.778 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1115
17-03-17 18:16:13.778 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1115
17-03-17 18:16:13.778 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:16:13.778 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1115
17-03-17 18:16:13.778 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1115
17-03-17 18:16:13.788 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:16:13.788 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:16:13.788 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1053298736, 0x0, 418435064) start.
17-03-17 18:16:13.788 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:16:13.788 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-17 18:16:13.968 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP 1308
17-03-17 18:16:13.968 -07 000000459 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:16:13.968 -07 000000610 INF: FPGA: 'CAMDBLSNAP 392 392 188 188 37866 150' command took 2 ms to send, 1307 ms to get response, and 1314 ms overall
17-03-17 18:16:13.978 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 18:16:13.978 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 2 at Y-position 59.91162109375, Z-Position -0.172539348299368. ------
17-03-17 18:16:13.978 -07 000000482 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:16:13.978 -07 000000626 INF: Y Motor: MoveYZ optimized starting. Moving Y to 60.7426 mm, moving Z to -0.17886 mm
17-03-17 18:16:13.978 -07 000000626 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:16:13.978 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:16:13.978 -07 000000459 INF: Z Motor: Entering MoveAbsStepped (DAC = 39072, sync = True, waitForSettling = False)
17-03-17 18:16:13.978 -07 000000459 INF: Z Motor: Moving to -0.178860 mm, started at -0.172539 mm, distance = -6.32 um
17-03-17 18:16:13.978 -07 000000627 INF: Y Motor: Entering MoveAbsStepped (target = 97188 steps, sync = True, waitForSettling = True)
17-03-17 18:16:13.978 -07 000000627 INF: Y Motor: Moving to 60.7426 mm, started at 59.9116 mm, delta = 0.8310 mm
17-03-17 18:16:13.988 -07 000000482 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 18:16:13.988 -07 000000459 INF: FPGA: Xmit ZDACW 39072\n [Z Motor]
17-03-17 18:16:13.988 -07 000000433 INF: FPGA: Recv ZDACW
17-03-17 18:16:13.998 -07 000000627 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:16:13.998 -07 000000459 INF: FPGA: 'ZDACW 39072' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:16:13.998 -07 000000429 INF: FPGA: Recv YRDPOS 122699
17-03-17 18:16:14.008 -07 000000482 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:16:14.008 -07 000000627 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 20 ms overall
17-03-17 18:16:14.008 -07 000000627 INF: Y Motor: Encoder = 122699 = motor step 95858.6 = 59.9116 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:16:14.008 -07 000000627 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:16:14.008 -07 000000627 INF: Y Motor: Moving 1330 steps1
17-03-17 18:16:14.018 -07 000000459 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:16:14.018 -07 000000569 INF: FPGA: Recv ZDACR 39072
17-03-17 18:16:14.028 -07 000000627 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:16:14.028 -07 000000459 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:16:14.028 -07 000000459 INF: Z Motor: MoveAbsStepped took 41 ms (did NOT wait for settling yet))
17-03-17 18:16:14.168 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 376 ms.
17-03-17 18:16:14.168 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-17 18:16:14.168 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:16:14.168 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1053298736, 0x0, 418435064) end. Duration was 377 ms.
17-03-17 18:16:14.168 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-17 18:16:14.168 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:16:14.168 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 18:16:14.168 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-17 18:16:14.168 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 18:16:14.178 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 18:16:14.208 -07 000000618 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:16:14.208 -07 000000482 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 194 ms to get response, and 224 ms overall
17-03-17 18:16:14.398 -07 000000618 INF: FPGA: Recv YMVTILE
17-03-17 18:16:14.398 -07 000000627 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 18:16:14.428 -07 000000627 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:16:15.248 -07 000000433 INF: FPGA: Recv YRDPOS 124382
17-03-17 18:16:15.248 -07 000000627 INF: FPGA: 'YRDPOS' command took 0 ms to send, 816 ms to get response, and 820 ms overall
17-03-17 18:16:15.248 -07 000000627 INF: Y Motor: Encoder = 124382 = motor step 97173.4 = 60.7334 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:16:15.248 -07 000000627 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm)
17-03-17 18:16:15.248 -07 000000627 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.831 mm, average velocity = 2.093 mm/sec
17-03-17 18:16:16.198 -07 000000627 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:16:16.198 -07 000000429 INF: FPGA: Recv YRDPOS 124383
17-03-17 18:16:16.208 -07 000000627 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:16:16.208 -07 000000627 INF: Y Motor: Encoder = 124383 = motor step 97174.2 = 60.7339 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:16:16.228 -07 000000627 INF: Y Motor: After move to 60.742607, error = -0.008720, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:16:16.228 -07 000000627 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 18:16:16.228 -07 000000627 INF: Y Motor: Moved to 60.7339 after 2241 ms (table move)
17-03-17 18:16:16.228 -07 000000626 INF: Z Motor: EndOfMoveAbsStepped: target = -0.178860 mm (DAC = 39072)
17-03-17 18:16:16.228 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:16:16.228 -07 000000433 INF: FPGA: Recv ZSGSRD 37134
17-03-17 18:16:16.238 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 18:16:16.238 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:16:16.238 -07 000000433 INF: FPGA: Recv ZSGSRD 37133
17-03-17 18:16:16.248 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:16:16.248 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:16:16.248 -07 000000448 INF: FPGA: Recv ZSGSRD 37133
17-03-17 18:16:16.258 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:16:16.258 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:16:16.258 -07 000000627 INF: FPGA: Recv ZSGSRD 37131
17-03-17 18:16:16.268 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:16:16.268 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:16:16.268 -07 000000448 INF: FPGA: Recv ZSGSRD 37131
17-03-17 18:16:16.278 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:16:16.278 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:16:16.278 -07 000000448 INF: FPGA: Recv ZSGSRD 37131
17-03-17 18:16:16.288 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:16:16.288 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:16:16.288 -07 000000627 INF: FPGA: Recv ZSGSRD 37131
17-03-17 18:16:16.298 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:16:16.298 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:16:16.298 -07 000000502 INF: FPGA: Recv ZSGSRD 37131
17-03-17 18:16:16.308 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:16:16.308 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:16:16.308 -07 000000448 INF: FPGA: Recv ZSGSRD 37134
17-03-17 18:16:16.318 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:16:16.318 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:16:16.318 -07 000000429 INF: FPGA: Recv ZSGSRD 37135
17-03-17 18:16:16.328 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:16:16.328 -07 000000626 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:16:16.328 -07 000000448 INF: FPGA: Recv ZPIEZORD 33431
17-03-17 18:16:16.338 -07 000000626 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:16:16.338 -07 000000626 INF: Z Motor: Piezo is near 51.4 V (nominally 0 to 100 V), expect near 59.6 V, since DAC is at 5.962 V. Piezo Error = -8.2 V.
17-03-17 18:16:16.338 -07 000000626 INF: Z Motor: ReadAdcAverage: Commanded Z = -178.9 um, Read 10 ADC samples: Avg = 37132 (-178.0 uncal um), Error = 0.9 uncal um, Median = 37132 (-178.0 uncal um), StdDev = 2 (0.0 uncal um), Range = 4 (0.0 uncal um), Min = 37131 (-178.0 uncal um), Max = 37135 (-178.0 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 1 (0.0 uncal um)
17-03-17 18:16:16.338 -07 000000626 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37132, posNoise = 3, negNoise = 1
17-03-17 18:16:16.338 -07 000000626 INF: Z Motor: After move to -0.178860, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:16:16.338 -07 000000626 INF: Z Motor: Settle wait time = 2247 ms, measure time = 104 ms (allowed 150 ms), total time = 2351 ms
17-03-17 18:16:16.338 -07 000000626 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 18:16:16.388 -07 000000626 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2405 ms
17-03-17 18:16:16.388 -07 000000626 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:16:16.388 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:16:16.388 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:16:16.388 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:16:16.388 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:16:16.388 -07 000000429 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:16:16.398 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 18:16:16.398 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:16:16.398 -07 000000448 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:16:16.398 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:16:16.398 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:16:16.398 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 18:16:16.398 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 18:16:16.408 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:16:16.448 -07 000000502 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:16:16.578 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:16:16.578 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 10. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=93, R2=102, Total=195. Warn if over 250 bubbles per interval.
17-03-17 18:16:16.648 -07 000000627 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:16:16.648 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:16:16.648 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:16:16.648 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 608668944, 0x0, 559484976) start.
17-03-17 18:16:16.688 -07 000000627 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:16:16.688 -07 000000502 INF: FPGA: Recv CAMSNAP
17-03-17 18:16:16.688 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 277 ms to get response, and 285 ms overall
17-03-17 18:16:16.778 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 608668944, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 18:16:16.778 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:16:16.778 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 18:16:16.778 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 18:16:17.558 -07 000000429 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 11, FrontChillerTemperature: 4.030322,
17-03-17 18:16:17.888 -07 000000626 INF: Autofocus start
17-03-17 18:16:17.888 -07 000000626 INF: MeasureProfile start
17-03-17 18:16:17.888 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:16:17.888 -07 000000448 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:16:17.898 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:16:17.898 -07 000000502 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:16:17.898 -07 000000626 INF: MeasureProfile done
17-03-17 18:16:17.898 -07 000000626 INF: X=-16  Z correction [um]=-0.1496812
17-03-17 18:16:17.898 -07 000000626 INF: Autofocus finished
17-03-17 18:16:18.098 -07 000000618 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:16:18.098 -07 000000502 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:16:18.098 -07 000000610 INF: ------------ Scan Snapping tile 2 at Y-position 60.73388671875, Z-position -0.178867197259003. ----------
17-03-17 18:16:18.098 -07 000000610 INF: Cycle	11	Tile	2	Exposure Settings		A	392	G	188	T	188	C	392
17-03-17 18:16:18.108 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37552, sync = True, waitForSettling = True)
17-03-17 18:16:18.108 -07 000000610 INF: Z Motor: Moving to -0.171902 mm, started at -0.178867 mm, distance = 6.97 um
17-03-17 18:16:18.108 -07 000000610 INF: FPGA: Xmit ZDACW 37552\n [Z Motor]
17-03-17 18:16:18.108 -07 000000618 INF: FPGA: Recv ZDACW
17-03-17 18:16:18.118 -07 000000610 INF: FPGA: 'ZDACW 37552' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:16:18.118 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:16:18.118 -07 000000448 INF: FPGA: Recv ZDACR 37552
17-03-17 18:16:18.128 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:16:18.128 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:16:18.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:16:18.278 -07 000000627 INF: FPGA: Recv ZSGSRD 36046
17-03-17 18:16:18.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:16:18.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:16:18.288 -07 000000448 INF: FPGA: Recv ZSGSRD 36052
17-03-17 18:16:18.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:16:18.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:16:18.298 -07 000000627 INF: FPGA: Recv ZSGSRD 36050
17-03-17 18:16:18.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:16:18.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:16:18.308 -07 000000618 INF: FPGA: Recv ZSGSRD 36049
17-03-17 18:16:18.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:16:18.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:16:18.318 -07 000000429 INF: FPGA: Recv ZSGSRD 36051
17-03-17 18:16:18.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:16:18.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:16:18.328 -07 000000626 INF: FPGA: Recv ZSGSRD 36047
17-03-17 18:16:18.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:16:18.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:16:18.338 -07 000000429 INF: FPGA: Recv ZSGSRD 36051
17-03-17 18:16:18.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:16:18.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:16:18.348 -07 000000626 INF: FPGA: Recv ZSGSRD 36051
17-03-17 18:16:18.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:16:18.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:16:18.358 -07 000000433 INF: FPGA: Recv ZSGSRD 36048
17-03-17 18:16:18.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:16:18.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:16:18.368 -07 000000626 INF: FPGA: Recv ZSGSRD 36052
17-03-17 18:16:18.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:16:18.378 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:16:18.378 -07 000000502 INF: FPGA: Recv ZPIEZORD 31955
17-03-17 18:16:18.388 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:16:18.388 -07 000000610 INF: Z Motor: Piezo is near 48.3 V (nominally 0 to 100 V), expect near 57.3 V, since DAC is at 5.730 V. Piezo Error = -9.0 V.
17-03-17 18:16:18.388 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.9 um, Read 10 ADC samples: Avg = 36050 (-171.0 uncal um), Error = 0.9 uncal um, Median = 36050 (-171.0 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 36046 (-171.0 uncal um), Max = 36052 (-171.0 uncal um), Pos Noise = 2 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 18:16:18.388 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36050, posNoise = 2, negNoise = 4
17-03-17 18:16:18.388 -07 000000610 INF: Z Motor: After move to -0.171902, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:16:18.388 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 18:16:18.388 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:16:18.388 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:16:18.388 -07 000000433 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:16:18.388 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:16:18.388 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:16:18.388 -07 000000448 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:16:18.388 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:16:18.388 -07 000000627 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:16:18.388 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:16:18.388 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:16:18.388 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:16:18.388 -07 000000448 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:16:18.398 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 18:16:18.398 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:16:18.398 -07 000000448 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 18:16:18.398 -07 000000448 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:16:18.408 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 18:16:18.408 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 18:16:18.408 -07 000000448 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 18:16:18.408 -07 000000448 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 18:16:18.408 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 392 392 188 188 37729 150\n [Camera]
17-03-17 18:16:18.608 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:16:19.008 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 584
17-03-17 18:16:19.008 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 584
17-03-17 18:16:19.008 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:16:19.008 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:16:19.008 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 1088721000, 0x0, 391868352) start.
17-03-17 18:16:19.008 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 584
17-03-17 18:16:19.008 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 584
17-03-17 18:16:19.008 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:16:19.008 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:16:19.008 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 1124143264, 0x0, 418435064) start.
17-03-17 18:16:19.198 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37729 777
17-03-17 18:16:19.348 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning grn on 927
17-03-17 18:16:19.408 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 1088721000, 0x0, 391868352) end. Duration was 401 ms.
17-03-17 18:16:19.408 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 18:16:19.408 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:16:19.418 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:16:19.418 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-17 18:16:19.418 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 1124143264, 0x0, 418435064) end. Duration was 403 ms.
17-03-17 18:16:19.418 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-17 18:16:19.418 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:16:19.418 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:16:19.428 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-17 18:16:19.538 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1115
17-03-17 18:16:19.538 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1115
17-03-17 18:16:19.538 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:16:19.538 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:16:19.538 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 18:16:19.538 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1115
17-03-17 18:16:19.538 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1115
17-03-17 18:16:19.538 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:16:19.658 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:16:19.658 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) start.
17-03-17 18:16:19.728 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP 1307
17-03-17 18:16:19.728 -07 000000433 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:16:19.728 -07 000000610 INF: FPGA: 'CAMDBLSNAP 392 392 188 188 37729 150' command took 2 ms to send, 1304 ms to get response, and 1315 ms overall
17-03-17 18:16:19.728 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 18:16:19.728 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 3 at Y-position 60.73388671875, Z-Position -0.171916199721617. ------
17-03-17 18:16:19.728 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:16:19.728 -07 000000448 INF: Y Motor: MoveYZ optimized starting. Moving Y to 61.5726 mm, moving Z to -0.17851 mm
17-03-17 18:16:19.738 -07 000000448 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:16:19.738 -07 000000433 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:16:19.738 -07 000000502 INF: Y Motor: Entering MoveAbsStepped (target = 98516 steps, sync = True, waitForSettling = True)
17-03-17 18:16:19.738 -07 000000502 INF: Y Motor: Moving to 61.5726 mm, started at 60.7339 mm, delta = 0.8387 mm
17-03-17 18:16:19.738 -07 000000459 INF: Z Motor: Entering MoveAbsStepped (DAC = 38996, sync = True, waitForSettling = False)
17-03-17 18:16:19.738 -07 000000459 INF: Z Motor: Moving to -0.178512 mm, started at -0.171916 mm, distance = -6.60 um
17-03-17 18:16:19.748 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:16:19.748 -07 000000459 INF: FPGA: Xmit ZDACW 38996\n [Z Motor]
17-03-17 18:16:19.748 -07 000000478 INF: FPGA: Recv ZDACW
17-03-17 18:16:19.758 -07 000000459 INF: FPGA: 'ZDACW 38996' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-17 18:16:19.758 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:16:19.758 -07 000000482 INF: FPGA: Recv YRDPOS 124383
17-03-17 18:16:19.768 -07 000000569 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:16:19.768 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-17 18:16:19.768 -07 000000502 INF: Y Motor: Encoder = 124383 = motor step 97174.2 = 60.7339 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:16:19.768 -07 000000502 INF: Y Motor: Last commanded position = 60.7426 mm (97188.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:16:19.768 -07 000000502 INF: Y Motor: Moving 1342 steps-19
17-03-17 18:16:19.778 -07 000000459 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:16:19.778 -07 000000478 INF: FPGA: Recv ZDACR 38996
17-03-17 18:16:19.788 -07 000000459 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:16:19.788 -07 000000502 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:16:19.788 -07 000000459 INF: Z Motor: MoveAbsStepped took 46 ms (did NOT wait for settling yet))
17-03-17 18:16:19.938 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 397 ms.
17-03-17 18:16:19.938 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 18:16:19.938 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:16:19.948 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-17 18:16:19.948 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-17 18:16:19.968 -07 000000459 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:16:19.968 -07 000000569 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 18:16:20.048 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) end. Duration was 388 ms.
17-03-17 18:16:20.048 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 18:16:20.048 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:16:20.048 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-17 18:16:20.048 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 513 ms.
17-03-17 18:16:20.158 -07 000000433 INF: FPGA: Recv YMVTILE
17-03-17 18:16:20.158 -07 000000502 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 18:16:20.188 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:16:20.198 -07 000000459 INF: FPGA: Recv YRDPOS 126084
17-03-17 18:16:20.198 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 18:16:20.198 -07 000000502 INF: Y Motor: Encoder = 126084 = motor step 98503.1 = 61.5645 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:16:20.198 -07 000000502 INF: Y Motor: Position error before settling (table move) = -17 encoder counts (-0.008 mm)
17-03-17 18:16:20.198 -07 000000502 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.839 mm, average velocity = 2.113 mm/sec
17-03-17 18:16:21.148 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:16:21.148 -07 000000431 INF: FPGA: Recv YRDPOS 126084
17-03-17 18:16:21.158 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:16:21.158 -07 000000502 INF: Y Motor: Encoder = 126084 = motor step 98503.1 = 61.5645 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:16:21.168 -07 000000502 INF: Y Motor: After move to 61.572609, error = -0.008156, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:16:21.178 -07 000000502 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:16:21.178 -07 000000502 INF: Y Motor: Moved to 61.5645 after 1436 ms (table move)
17-03-17 18:16:21.178 -07 000000448 INF: Z Motor: EndOfMoveAbsStepped: target = -0.178512 mm (DAC = 38996)
17-03-17 18:16:21.178 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:16:21.178 -07 000000569 INF: FPGA: Recv ZSGSRD 37078
17-03-17 18:16:21.188 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:16:21.188 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:16:21.188 -07 000000478 INF: FPGA: Recv ZSGSRD 37071
17-03-17 18:16:21.198 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:16:21.198 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:16:21.198 -07 000000569 INF: FPGA: Recv ZSGSRD 37075
17-03-17 18:16:21.208 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:16:21.208 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:16:21.208 -07 000000478 INF: FPGA: Recv ZSGSRD 37072
17-03-17 18:16:21.218 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:16:21.218 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:16:21.218 -07 000000482 INF: FPGA: Recv ZSGSRD 37077
17-03-17 18:16:21.228 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:16:21.228 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:16:21.228 -07 000000415 INF: FPGA: Recv ZSGSRD 37083
17-03-17 18:16:21.238 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:16:21.238 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:16:21.238 -07 000000626 INF: FPGA: Recv ZSGSRD 37083
17-03-17 18:16:21.248 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:16:21.248 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:16:21.248 -07 000000415 INF: FPGA: Recv ZSGSRD 37079
17-03-17 18:16:21.258 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:16:21.258 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:16:21.258 -07 000000626 INF: FPGA: Recv ZSGSRD 37078
17-03-17 18:16:21.268 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:16:21.268 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:16:21.268 -07 000000627 INF: FPGA: Recv ZSGSRD 37073
17-03-17 18:16:21.278 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:16:21.278 -07 000000448 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:16:21.278 -07 000000627 INF: FPGA: Recv ZPIEZORD 33353
17-03-17 18:16:21.288 -07 000000448 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:16:21.288 -07 000000448 INF: Z Motor: Piezo is near 51.3 V (nominally 0 to 100 V), expect near 59.5 V, since DAC is at 5.950 V. Piezo Error = -8.3 V.
17-03-17 18:16:21.288 -07 000000448 INF: Z Motor: ReadAdcAverage: Commanded Z = -178.5 um, Read 10 ADC samples: Avg = 37077 (-177.6 uncal um), Error = 0.9 uncal um, Median = 37078 (-177.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 37071 (-177.6 uncal um), Max = 37083 (-177.7 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 18:16:21.288 -07 000000448 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37077, posNoise = 6, negNoise = 6
17-03-17 18:16:21.288 -07 000000448 INF: Z Motor: After move to -0.178512, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:16:21.288 -07 000000448 INF: Z Motor: Settle wait time = 1439 ms, measure time = 107 ms (allowed 150 ms), total time = 1546 ms
17-03-17 18:16:21.288 -07 000000448 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-17 18:16:21.338 -07 000000448 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1600 ms
17-03-17 18:16:21.338 -07 000000448 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:16:21.338 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:16:21.338 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:16:21.338 -07 000000627 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:16:21.338 -07 000000415 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:16:21.338 -07 000000478 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:16:21.338 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:16:21.338 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 18:16:21.338 -07 000000478 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:16:21.348 -07 000000478 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:16:21.348 -07 000000478 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:16:21.358 -07 000000478 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-17 18:16:21.358 -07 000000478 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-17 18:16:21.358 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:16:21.408 -07 000000459 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:16:21.578 -07 000000448 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:16:21.578 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 10. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=93, R2=102, Total=195. Warn if over 250 bubbles per interval.
17-03-17 18:16:21.608 -07 000000478 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:16:21.608 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:16:21.608 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:16:21.608 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2415923248, 0x0, 559484976) start.
17-03-17 18:16:21.648 -07 000000415 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:16:21.648 -07 000000627 INF: FPGA: Recv CAMSNAP
17-03-17 18:16:21.648 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 281 ms to get response, and 285 ms overall
17-03-17 18:16:21.728 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2415923248, 0x0, 559484976) end. Duration was 125 ms.
17-03-17 18:16:21.728 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:16:21.738 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 18:16:21.738 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms.
17-03-17 18:16:21.748 -07 000000448 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:16:21.748 -07 000000478 INF: Autofocus start
17-03-17 18:16:21.748 -07 000000478 INF: MeasureProfile start
17-03-17 18:16:21.748 -07 000000459 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:16:21.758 -07 000000448 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:16:21.758 -07 000000448 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:16:21.758 -07 000000478 INF: MeasureProfile done
17-03-17 18:16:21.758 -07 000000478 INF: X=16  Z correction [um]=0.01042744
17-03-17 18:16:21.758 -07 000000478 INF: Autofocus finished
17-03-17 18:16:21.958 -07 000000478 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:16:21.958 -07 000000448 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 203 ms overall
17-03-17 18:16:21.958 -07 000000610 INF: ------------ Scan Snapping tile 3 at Y-position 61.564453125, Z-position -0.178513865591206. ----------
17-03-17 18:16:21.968 -07 000000610 INF: Cycle	11	Tile	3	Exposure Settings		A	392	G	188	T	188	C	392
17-03-17 18:16:21.968 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37511, sync = True, waitForSettling = True)
17-03-17 18:16:21.968 -07 000000610 INF: Z Motor: Moving to -0.171714 mm, started at -0.178514 mm, distance = 6.80 um
17-03-17 18:16:21.968 -07 000000610 INF: FPGA: Xmit ZDACW 37511\n [Z Motor]
17-03-17 18:16:21.968 -07 000000415 INF: FPGA: Recv ZDACW
17-03-17 18:16:21.978 -07 000000610 INF: FPGA: 'ZDACW 37511' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 18:16:21.978 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:16:21.978 -07 000000448 INF: FPGA: Recv ZDACR 37511
17-03-17 18:16:21.988 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:16:21.988 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:16:22.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:16:22.138 -07 000000415 INF: FPGA: Recv ZSGSRD 36022
17-03-17 18:16:22.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:16:22.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:16:22.148 -07 000000459 INF: FPGA: Recv ZSGSRD 36023
17-03-17 18:16:22.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:16:22.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:16:22.158 -07 000000478 INF: FPGA: Recv ZSGSRD 36019
17-03-17 18:16:22.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:16:22.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:16:22.168 -07 000000459 INF: FPGA: Recv ZSGSRD 36017
17-03-17 18:16:22.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:16:22.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:16:22.178 -07 000000429 INF: FPGA: Recv ZSGSRD 36026
17-03-17 18:16:22.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:16:22.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:16:22.188 -07 000000478 INF: FPGA: Recv ZSGSRD 36025
17-03-17 18:16:22.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:16:22.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:16:22.198 -07 000000627 INF: FPGA: Recv ZSGSRD 36016
17-03-17 18:16:22.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:16:22.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:16:22.208 -07 000000448 INF: FPGA: Recv ZSGSRD 36023
17-03-17 18:16:22.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:16:22.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:16:22.218 -07 000000627 INF: FPGA: Recv ZSGSRD 36019
17-03-17 18:16:22.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:16:22.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:16:22.228 -07 000000478 INF: FPGA: Recv ZSGSRD 36023
17-03-17 18:16:22.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:16:22.238 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:16:22.238 -07 000000627 INF: FPGA: Recv ZPIEZORD 31907
17-03-17 18:16:22.248 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:16:22.248 -07 000000610 INF: Z Motor: Piezo is near 48.2 V (nominally 0 to 100 V), expect near 57.2 V, since DAC is at 5.724 V. Piezo Error = -9.1 V.
17-03-17 18:16:22.248 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.7 um, Read 10 ADC samples: Avg = 36021 (-170.9 uncal um), Error = 0.9 uncal um, Median = 36022 (-170.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 36016 (-170.8 uncal um), Max = 36026 (-170.9 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 18:16:22.248 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36021, posNoise = 5, negNoise = 5
17-03-17 18:16:22.248 -07 000000610 INF: Z Motor: After move to -0.171714, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:16:22.248 -07 000000610 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-17 18:16:22.248 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:16:22.248 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:16:22.248 -07 000000459 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:16:22.248 -07 000000448 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:16:22.248 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:16:22.248 -07 000000627 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:16:22.248 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:16:22.248 -07 000000478 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:16:22.248 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:16:22.248 -07 000000448 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:16:22.248 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 18:16:22.248 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:16:22.258 -07 000000448 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 18:16:22.258 -07 000000448 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:16:22.258 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 18:16:22.258 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:16:22.268 -07 000000448 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 18:16:22.268 -07 000000448 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 18:16:22.268 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 18:16:22.268 -07 000000627 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 18:16:22.278 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 392 392 188 188 37688 150\n [Camera]
17-03-17 18:16:22.468 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:16:22.868 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 584
17-03-17 18:16:22.868 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 584
17-03-17 18:16:22.868 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:16:22.868 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 584
17-03-17 18:16:22.868 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 584
17-03-17 18:16:22.868 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:16:22.868 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:16:22.868 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 18:16:22.878 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:16:22.878 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 2485095640, 0x0, 391868352) start.
17-03-17 18:16:22.918 -07 000000429 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 11, FrontChillerTemperature: 4.0344,
17-03-17 18:16:23.058 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37688 777
17-03-17 18:16:23.208 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP turning grn on 927
17-03-17 18:16:23.268 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 396 ms.
17-03-17 18:16:23.268 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 18:16:23.268 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:16:23.268 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 2485095640, 0x0, 391868352) end. Duration was 395 ms.
17-03-17 18:16:23.268 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 18:16:23.268 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:16:23.268 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:16:23.278 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:16:23.278 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-17 18:16:23.278 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-17 18:16:23.398 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1115
17-03-17 18:16:23.398 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1115
17-03-17 18:16:23.398 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:16:23.398 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:16:23.398 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-17 18:16:23.398 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1115
17-03-17 18:16:23.398 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1115
17-03-17 18:16:23.398 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:16:23.508 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:16:23.508 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) start.
17-03-17 18:16:23.588 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP 1307
17-03-17 18:16:23.588 -07 000000482 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:16:23.588 -07 000000610 INF: FPGA: 'CAMDBLSNAP 392 392 188 188 37688 150' command took 2 ms to send, 1305 ms to get response, and 1314 ms overall
17-03-17 18:16:23.588 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 18:16:23.588 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 4 at Y-position 61.564453125, Z-Position -0.171729897569506. ------
17-03-17 18:16:23.598 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:16:23.598 -07 000000627 INF: Y Motor: MoveYZ optimized starting. Moving Y to 62.4026 mm, moving Z to -0.17784 mm
17-03-17 18:16:23.598 -07 000000627 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:16:23.598 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:16:23.598 -07 000000478 INF: Y Motor: Entering MoveAbsStepped (target = 99844 steps, sync = True, waitForSettling = True)
17-03-17 18:16:23.598 -07 000000478 INF: Y Motor: Moving to 62.4026 mm, started at 61.5645 mm, delta = 0.8382 mm
17-03-17 18:16:23.598 -07 000000482 INF: Z Motor: Entering MoveAbsStepped (DAC = 38848, sync = True, waitForSettling = False)
17-03-17 18:16:23.598 -07 000000482 INF: Z Motor: Moving to -0.177835 mm, started at -0.171730 mm, distance = -6.10 um
17-03-17 18:16:23.608 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:16:23.608 -07 000000482 INF: FPGA: Xmit ZDACW 38848\n [Z Motor]
17-03-17 18:16:23.608 -07 000000569 INF: FPGA: Recv ZDACW
17-03-17 18:16:23.618 -07 000000478 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:16:23.618 -07 000000482 INF: FPGA: 'ZDACW 38848' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-17 18:16:23.618 -07 000000569 INF: FPGA: Recv YRDPOS 126085
17-03-17 18:16:23.628 -07 000000431 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:16:23.628 -07 000000478 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-17 18:16:23.628 -07 000000478 INF: Y Motor: Encoder = 126085 = motor step 98503.9 = 61.5649 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:16:23.628 -07 000000478 INF: Y Motor: Last commanded position = 61.5726 mm (98516.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:16:23.628 -07 000000478 INF: Y Motor: Moving 1340 steps-17
17-03-17 18:16:23.638 -07 000000482 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:16:23.638 -07 000000424 INF: FPGA: Recv ZDACR 38848
17-03-17 18:16:23.648 -07 000000478 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:16:23.648 -07 000000482 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:16:23.648 -07 000000482 INF: Z Motor: MoveAbsStepped took 45 ms (did NOT wait for settling yet))
17-03-17 18:16:23.788 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 394 ms.
17-03-17 18:16:23.788 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 18:16:23.788 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:16:23.798 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 18:16:23.798 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 18:16:23.828 -07 000000569 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:16:23.828 -07 000000431 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 18:16:23.898 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) end. Duration was 384 ms.
17-03-17 18:16:23.898 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-17 18:16:23.898 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:16:23.898 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:16:23.908 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 505 ms.
17-03-17 18:16:24.018 -07 000000433 INF: FPGA: Recv YMVTILE
17-03-17 18:16:24.018 -07 000000478 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 392 ms overall
17-03-17 18:16:24.048 -07 000000478 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:16:24.058 -07 000000431 INF: FPGA: Recv YRDPOS 127787
17-03-17 18:16:24.058 -07 000000478 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 18:16:24.058 -07 000000478 INF: Y Motor: Encoder = 127787 = motor step 99833.6 = 62.3960 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:16:24.058 -07 000000478 INF: Y Motor: Position error before settling (table move) = -14 encoder counts (-0.007 mm)
17-03-17 18:16:24.058 -07 000000478 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 392 ms, distance = 0.838 mm, average velocity = 2.138 mm/sec
17-03-17 18:16:25.008 -07 000000478 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:16:25.008 -07 000000626 INF: FPGA: Recv YRDPOS 127787
17-03-17 18:16:25.018 -07 000000478 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:16:25.018 -07 000000478 INF: Y Motor: Encoder = 127787 = motor step 99833.6 = 62.3960 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:16:25.028 -07 000000478 INF: Y Motor: After move to 62.402607, error = -0.006611, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:16:25.028 -07 000000478 INF: Y Motor: Position error after settling (table move) = -14 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:16:25.028 -07 000000478 INF: Y Motor: Moved to 62.3960 after 1433 ms (table move)
17-03-17 18:16:25.038 -07 000000627 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177835 mm (DAC = 38848)
17-03-17 18:16:25.038 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:16:25.038 -07 000000482 INF: FPGA: Recv ZSGSRD 36978
17-03-17 18:16:25.048 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:16:25.048 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:16:25.048 -07 000000431 INF: FPGA: Recv ZSGSRD 36972
17-03-17 18:16:25.058 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:16:25.058 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:16:25.058 -07 000000482 INF: FPGA: Recv ZSGSRD 36972
17-03-17 18:16:25.068 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:16:25.068 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:16:25.068 -07 000000424 INF: FPGA: Recv ZSGSRD 36967
17-03-17 18:16:25.078 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:16:25.078 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:16:25.078 -07 000000502 INF: FPGA: Recv ZSGSRD 36975
17-03-17 18:16:25.088 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:16:25.088 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:16:25.088 -07 000000431 INF: FPGA: Recv ZSGSRD 36980
17-03-17 18:16:25.098 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:16:25.098 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:16:25.098 -07 000000429 INF: FPGA: Recv ZSGSRD 36975
17-03-17 18:16:25.108 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:16:25.108 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:16:25.108 -07 000000431 INF: FPGA: Recv ZSGSRD 36970
17-03-17 18:16:25.118 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:16:25.118 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:16:25.118 -07 000000626 INF: FPGA: Recv ZSGSRD 36969
17-03-17 18:16:25.128 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:16:25.128 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:16:25.128 -07 000000415 INF: FPGA: Recv ZSGSRD 36966
17-03-17 18:16:25.138 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:16:25.138 -07 000000627 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:16:25.138 -07 000000569 INF: FPGA: Recv ZPIEZORD 33219
17-03-17 18:16:25.148 -07 000000627 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:16:25.148 -07 000000627 INF: Z Motor: Piezo is near 51.0 V (nominally 0 to 100 V), expect near 59.3 V, since DAC is at 5.928 V. Piezo Error = -8.3 V.
17-03-17 18:16:25.148 -07 000000627 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.8 um, Read 10 ADC samples: Avg = 36972 (-176.9 uncal um), Error = 0.9 uncal um, Median = 36972 (-176.9 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 36966 (-176.9 uncal um), Max = 36980 (-177.0 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 18:16:25.148 -07 000000627 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36972, posNoise = 8, negNoise = 6
17-03-17 18:16:25.148 -07 000000627 INF: Z Motor: After move to -0.177835, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:16:25.148 -07 000000627 INF: Z Motor: Settle wait time = 1436 ms, measure time = 109 ms (allowed 150 ms), total time = 1545 ms
17-03-17 18:16:25.148 -07 000000627 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-17 18:16:25.198 -07 000000627 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1599 ms
17-03-17 18:16:25.198 -07 000000627 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:16:25.198 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:16:25.198 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:16:25.198 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:16:25.198 -07 000000448 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:16:25.198 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:16:25.198 -07 000000459 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:16:25.198 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 18:16:25.198 -07 000000448 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:16:25.208 -07 000000448 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:16:25.208 -07 000000448 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:16:25.218 -07 000000448 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-17 18:16:25.218 -07 000000448 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-17 18:16:25.218 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:16:25.268 -07 000000478 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:16:25.468 -07 000000569 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:16:25.468 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:16:25.468 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:16:25.468 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 639799168, 0x0, 559484976) start.
17-03-17 18:16:25.498 -07 000000429 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:16:25.508 -07 000000424 INF: FPGA: Recv CAMSNAP
17-03-17 18:16:25.508 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 280 ms to get response, and 284 ms overall
17-03-17 18:16:25.588 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 639799168, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 18:16:25.588 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:16:25.598 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 18:16:25.598 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 18:16:25.608 -07 000000459 INF: Autofocus start
17-03-17 18:16:25.608 -07 000000459 INF: MeasureProfile start
17-03-17 18:16:25.608 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:16:25.618 -07 000000431 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:16:25.618 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 3 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:16:25.618 -07 000000569 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:16:25.618 -07 000000459 INF: MeasureProfile done
17-03-17 18:16:25.618 -07 000000459 INF: X=16  Z correction [um]=0.01042744
17-03-17 18:16:25.618 -07 000000459 INF: Autofocus finished
17-03-17 18:16:25.818 -07 000000627 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:16:25.818 -07 000000569 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:16:25.818 -07 000000610 INF: ------------ Scan Snapping tile 4 at Y-position 62.39599609375, Z-position -0.177839323316321. ----------
17-03-17 18:16:25.818 -07 000000610 INF: Cycle	11	Tile	4	Exposure Settings		A	392	G	188	T	188	C	392
17-03-17 18:16:25.828 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37363, sync = True, waitForSettling = True)
17-03-17 18:16:25.828 -07 000000610 INF: Z Motor: Moving to -0.171037 mm, started at -0.177839 mm, distance = 6.80 um
17-03-17 18:16:25.828 -07 000000610 INF: FPGA: Xmit ZDACW 37363\n [Z Motor]
17-03-17 18:16:25.828 -07 000000627 INF: FPGA: Recv ZDACW
17-03-17 18:16:25.838 -07 000000610 INF: FPGA: 'ZDACW 37363' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:16:25.838 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:16:25.838 -07 000000626 INF: FPGA: Recv ZDACR 37363
17-03-17 18:16:25.848 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:16:25.848 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:16:25.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:16:25.998 -07 000000424 INF: FPGA: Recv ZSGSRD 35921
17-03-17 18:16:26.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:16:26.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:16:26.008 -07 000000478 INF: FPGA: Recv ZSGSRD 35920
17-03-17 18:16:26.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:16:26.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:16:26.018 -07 000000424 INF: FPGA: Recv ZSGSRD 35914
17-03-17 18:16:26.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:16:26.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:16:26.028 -07 000000478 INF: FPGA: Recv ZSGSRD 35917
17-03-17 18:16:26.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:16:26.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:16:26.038 -07 000000569 INF: FPGA: Recv ZSGSRD 35916
17-03-17 18:16:26.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:16:26.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:16:26.048 -07 000000478 INF: FPGA: Recv ZSGSRD 35913
17-03-17 18:16:26.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:16:26.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:16:26.058 -07 000000627 INF: FPGA: Recv ZSGSRD 35916
17-03-17 18:16:26.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:16:26.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:16:26.068 -07 000000478 INF: FPGA: Recv ZSGSRD 35915
17-03-17 18:16:26.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:16:26.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:16:26.078 -07 000000627 INF: FPGA: Recv ZSGSRD 35916
17-03-17 18:16:26.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:16:26.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:16:26.088 -07 000000478 INF: FPGA: Recv ZSGSRD 35914
17-03-17 18:16:26.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:16:26.098 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:16:26.098 -07 000000618 INF: FPGA: Recv ZPIEZORD 31820
17-03-17 18:16:26.108 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:16:26.108 -07 000000610 INF: Z Motor: Piezo is near 48.0 V (nominally 0 to 100 V), expect near 57.0 V, since DAC is at 5.701 V. Piezo Error = -9.0 V.
17-03-17 18:16:26.108 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.0 um, Read 10 ADC samples: Avg = 35916 (-170.2 uncal um), Error = 0.9 uncal um, Median = 35916 (-170.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35913 (-170.2 uncal um), Max = 35921 (-170.2 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 18:16:26.108 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35916, posNoise = 5, negNoise = 3
17-03-17 18:16:26.108 -07 000000610 INF: Z Motor: After move to -0.171037, error = -0.000019, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:16:26.118 -07 000000610 INF: Z Motor: MoveAbsStepped took 288 ms)
17-03-17 18:16:26.118 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:16:26.118 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:16:26.128 -07 000000478 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:16:26.128 -07 000000627 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:16:26.128 -07 000000433 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:16:26.138 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:16:26.138 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:16:26.138 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:16:26.138 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:16:26.138 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:16:26.138 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:16:26.138 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:16:26.138 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 18:16:26.138 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:16:26.138 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-17 18:16:26.138 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:16:26.148 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 11 ms.
17-03-17 18:16:26.148 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 18 ms.
17-03-17 18:16:26.148 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 13 ms.
17-03-17 18:16:26.158 -07 000000433 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 18:16:26.158 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 392 392 188 188 37540 150\n [Camera]
17-03-17 18:16:26.358 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:16:26.578 -07 000000424 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:16:26.578 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 10. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=93, R2=102, Total=195. Warn if over 250 bubbles per interval.
17-03-17 18:16:26.748 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 584
17-03-17 18:16:26.748 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 584
17-03-17 18:16:26.748 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:16:26.748 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 584
17-03-17 18:16:26.748 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 584
17-03-17 18:16:26.748 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:16:26.758 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:16:26.758 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-17 18:16:26.758 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:16:26.758 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 18:16:26.938 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37540 777
17-03-17 18:16:27.088 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning grn on 927
17-03-17 18:16:27.148 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 392 ms.
17-03-17 18:16:27.148 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-17 18:16:27.148 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:16:27.148 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:16:27.148 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 18:16:27.148 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 390 ms.
17-03-17 18:16:27.158 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 18:16:27.158 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:16:27.158 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:16:27.168 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-17 18:16:27.278 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1115
17-03-17 18:16:27.278 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1115
17-03-17 18:16:27.278 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:16:27.278 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:16:27.278 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 2485095640, 0x0, 391868352) start.
17-03-17 18:16:27.278 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1115
17-03-17 18:16:27.278 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1115
17-03-17 18:16:27.278 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:16:27.288 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:16:27.288 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-17 18:16:27.468 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP 1307
17-03-17 18:16:27.468 -07 000000569 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:16:27.468 -07 000000610 INF: FPGA: 'CAMDBLSNAP 392 392 188 188 37540 150' command took 3 ms to send, 1308 ms to get response, and 1315 ms overall
17-03-17 18:16:27.478 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 18:16:27.478 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 5 at Y-position 62.39599609375, Z-Position -0.171055355294621. ------
17-03-17 18:16:27.478 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:16:27.478 -07 000000424 INF: Y Motor: MoveYZ optimized starting. Moving Y to 63.2326 mm, moving Z to -0.17765 mm
17-03-17 18:16:27.478 -07 000000424 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:16:27.688 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 2485095640, 0x0, 391868352) end. Duration was 403 ms.
17-03-17 18:16:27.688 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 18:16:27.688 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:16:27.688 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 403 ms.
17-03-17 18:16:27.688 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-17 18:16:27.688 -07 000000433 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:16:27.688 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:16:27.688 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 18:16:27.688 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-17 18:16:27.698 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-17 18:16:28.248 -07 000000415 INF: Y Motor: Entering MoveAbsStepped (target = 101172 steps, sync = True, waitForSettling = True)
17-03-17 18:16:28.248 -07 000000415 INF: Y Motor: Moving to 63.2326 mm, started at 62.3960 mm, delta = 0.8366 mm
17-03-17 18:16:28.248 -07 000000415 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:16:28.758 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:16:28.758 -07 000000618 INF: FPGA: Recv YRDPOS 127788
17-03-17 18:16:28.758 -07 000000415 INF: FPGA: 'YRDPOS' command took 0 ms to send, 502 ms to get response, and 511 ms overall
17-03-17 18:16:28.758 -07 000000415 INF: Y Motor: Encoder = 127788 = motor step 99834.4 = 62.3965 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:16:28.758 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1272 ms to get response, and 1279 ms overall
17-03-17 18:16:28.758 -07 000000569 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:16:28.758 -07 000000618 INF: Z Motor: Entering MoveAbsStepped (DAC = 38808, sync = True, waitForSettling = False)
17-03-17 18:16:28.758 -07 000000618 INF: Z Motor: Moving to -0.177652 mm, started at -0.171055 mm, distance = -6.60 um
17-03-17 18:16:28.758 -07 000000415 INF: Y Motor: Last commanded position = 62.4026 mm (99844.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:16:28.758 -07 000000415 INF: Y Motor: Moving 1338 steps-14
17-03-17 18:16:28.768 -07 000000415 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:16:28.778 -07 000000618 INF: FPGA: Xmit ZDACW 38808\n [Z Motor]
17-03-17 18:16:28.778 -07 000000478 INF: FPGA: Recv ZDACW
17-03-17 18:16:28.788 -07 000000618 INF: FPGA: 'ZDACW 38808' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-17 18:16:28.788 -07 000000618 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:16:28.788 -07 000000627 INF: FPGA: Recv ZDACR 38808
17-03-17 18:16:28.798 -07 000000618 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:16:28.808 -07 000000618 INF: Z Motor: MoveAbsStepped took 48 ms (did NOT wait for settling yet))
17-03-17 18:16:28.958 -07 000000433 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:16:28.958 -07 000000569 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 197 ms to get response, and 203 ms overall
17-03-17 18:16:29.068 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 11, FrontChillerTemperature: 4.007176,
17-03-17 18:16:29.138 -07 000000478 INF: FPGA: Recv YMVTILE
17-03-17 18:16:29.138 -07 000000415 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 380 ms overall
17-03-17 18:16:29.178 -07 000000415 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:16:29.178 -07 000000433 INF: FPGA: Recv YRDPOS 129484
17-03-17 18:16:29.188 -07 000000415 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:16:29.188 -07 000000415 INF: Y Motor: Encoder = 129484 = motor step 101159.4 = 63.2246 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:16:29.188 -07 000000415 INF: Y Motor: Position error before settling (table move) = -16 encoder counts (-0.008 mm)
17-03-17 18:16:29.188 -07 000000415 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 380 ms, distance = 0.837 mm, average velocity = 2.202 mm/sec
17-03-17 18:16:30.138 -07 000000415 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:16:30.138 -07 000000627 INF: FPGA: Recv YRDPOS 129484
17-03-17 18:16:30.148 -07 000000415 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:16:30.148 -07 000000415 INF: Y Motor: Encoder = 129484 = motor step 101159.4 = 63.2246 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:16:30.168 -07 000000415 INF: Y Motor: After move to 63.232609, error = -0.007999, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:16:30.168 -07 000000415 INF: Y Motor: Position error after settling (table move) = -16 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:16:30.168 -07 000000415 INF: Y Motor: Moved to 63.2246 after 1920 ms (table move)
17-03-17 18:16:30.168 -07 000000424 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177652 mm (DAC = 38808)
17-03-17 18:16:30.168 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:16:30.168 -07 000000448 INF: FPGA: Recv ZSGSRD 36944
17-03-17 18:16:30.178 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 18:16:30.178 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:16:30.178 -07 000000448 INF: FPGA: Recv ZSGSRD 36941
17-03-17 18:16:30.188 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:16:30.188 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:16:30.188 -07 000000415 INF: FPGA: Recv ZSGSRD 36942
17-03-17 18:16:30.198 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:16:30.198 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:16:30.198 -07 000000448 INF: FPGA: Recv ZSGSRD 36947
17-03-17 18:16:30.208 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:16:30.208 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:16:30.208 -07 000000627 INF: FPGA: Recv ZSGSRD 36949
17-03-17 18:16:30.218 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:16:30.218 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:16:30.218 -07 000000448 INF: FPGA: Recv ZSGSRD 36948
17-03-17 18:16:30.228 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:16:30.228 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:16:30.228 -07 000000627 INF: FPGA: Recv ZSGSRD 36947
17-03-17 18:16:30.238 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:16:30.238 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:16:30.238 -07 000000433 INF: FPGA: Recv ZSGSRD 36942
17-03-17 18:16:30.248 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:16:30.248 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:16:30.248 -07 000000478 INF: FPGA: Recv ZSGSRD 36939
17-03-17 18:16:30.258 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:16:30.258 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:16:30.258 -07 000000433 INF: FPGA: Recv ZSGSRD 36944
17-03-17 18:16:30.268 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:16:30.268 -07 000000424 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:16:30.268 -07 000000569 INF: FPGA: Recv ZPIEZORD 33209
17-03-17 18:16:30.278 -07 000000424 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:16:30.278 -07 000000424 INF: Z Motor: Piezo is near 50.9 V (nominally 0 to 100 V), expect near 59.2 V, since DAC is at 5.922 V. Piezo Error = -8.3 V.
17-03-17 18:16:30.278 -07 000000424 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.7 um, Read 10 ADC samples: Avg = 36944 (-176.8 uncal um), Error = 0.9 uncal um, Median = 36944 (-176.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 36939 (-176.7 uncal um), Max = 36949 (-176.8 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 18:16:30.278 -07 000000424 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36944, posNoise = 5, negNoise = 5
17-03-17 18:16:30.278 -07 000000424 INF: Z Motor: After move to -0.177652, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:16:30.278 -07 000000424 INF: Z Motor: Settle wait time = 1410 ms, measure time = 105 ms (allowed 150 ms), total time = 1515 ms
17-03-17 18:16:30.278 -07 000000424 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 18:16:30.328 -07 000000424 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2846 ms
17-03-17 18:16:30.328 -07 000000424 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:16:30.328 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:16:30.328 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:16:30.328 -07 000000478 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:16:30.338 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:16:30.338 -07 000000448 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:16:30.338 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:16:30.338 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 18:16:30.338 -07 000000448 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:16:30.338 -07 000000448 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:16:30.338 -07 000000448 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:16:30.348 -07 000000448 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 18:16:30.348 -07 000000448 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-17 18:16:30.348 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:16:30.398 -07 000000626 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:16:30.588 -07 000000415 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:16:30.598 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:16:30.598 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:16:30.598 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 658880552, 0x0, 559484976) start.
17-03-17 18:16:30.628 -07 000000618 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:16:30.638 -07 000000569 INF: FPGA: Recv CAMSNAP
17-03-17 18:16:30.638 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 280 ms to get response, and 285 ms overall
17-03-17 18:16:30.718 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 658880552, 0x0, 559484976) end. Duration was 116 ms.
17-03-17 18:16:30.718 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:16:30.718 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 18:16:30.718 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 124 ms.
17-03-17 18:16:30.738 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:16:30.738 -07 000000415 INF: Autofocus start
17-03-17 18:16:30.738 -07 000000415 INF: MeasureProfile start
17-03-17 18:16:30.738 -07 000000627 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:16:30.748 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 18:16:30.748 -07 000000626 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:16:30.748 -07 000000415 INF: MeasureProfile done
17-03-17 18:16:30.748 -07 000000415 INF: X=16  Z correction [um]=0.01042744
17-03-17 18:16:30.748 -07 000000415 INF: Autofocus finished
17-03-17 18:16:30.948 -07 000000569 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:16:30.948 -07 000000626 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:16:30.948 -07 000000610 INF: ------------ Scan Snapping tile 5 at Y-position 63.224609375, Z-position -0.177659445376352. ----------
17-03-17 18:16:30.948 -07 000000610 INF: Cycle	11	Tile	5	Exposure Settings		A	392	G	188	T	188	C	392
17-03-17 18:16:30.958 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37323, sync = True, waitForSettling = True)
17-03-17 18:16:30.958 -07 000000610 INF: Z Motor: Moving to -0.170854 mm, started at -0.177659 mm, distance = 6.81 um
17-03-17 18:16:30.958 -07 000000610 INF: FPGA: Xmit ZDACW 37323\n [Z Motor]
17-03-17 18:16:30.958 -07 000000478 INF: FPGA: Recv ZDACW
17-03-17 18:16:30.968 -07 000000610 INF: FPGA: 'ZDACW 37323' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:16:30.968 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:16:30.968 -07 000000618 INF: FPGA: Recv ZDACR 37323
17-03-17 18:16:30.978 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:16:30.978 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:16:31.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:16:31.128 -07 000000627 INF: FPGA: Recv ZSGSRD 35888
17-03-17 18:16:31.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:16:31.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:16:31.138 -07 000000569 INF: FPGA: Recv ZSGSRD 35890
17-03-17 18:16:31.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:16:31.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:16:31.148 -07 000000433 INF: FPGA: Recv ZSGSRD 35885
17-03-17 18:16:31.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:16:31.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:16:31.158 -07 000000627 INF: FPGA: Recv ZSGSRD 35889
17-03-17 18:16:31.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:16:31.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:16:31.168 -07 000000424 INF: FPGA: Recv ZSGSRD 35883
17-03-17 18:16:31.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:16:31.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:16:31.178 -07 000000433 INF: FPGA: Recv ZSGSRD 35885
17-03-17 18:16:31.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:16:31.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:16:31.188 -07 000000433 INF: FPGA: Recv ZSGSRD 35889
17-03-17 18:16:31.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:16:31.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:16:31.198 -07 000000448 INF: FPGA: Recv ZSGSRD 35885
17-03-17 18:16:31.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:16:31.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:16:31.208 -07 000000433 INF: FPGA: Recv ZSGSRD 35886
17-03-17 18:16:31.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:16:31.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:16:31.218 -07 000000626 INF: FPGA: Recv ZSGSRD 35883
17-03-17 18:16:31.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:16:31.228 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:16:31.228 -07 000000415 INF: FPGA: Recv ZPIEZORD 31790
17-03-17 18:16:31.238 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:16:31.238 -07 000000610 INF: Z Motor: Piezo is near 47.9 V (nominally 0 to 100 V), expect near 57.0 V, since DAC is at 5.695 V. Piezo Error = -9.0 V.
17-03-17 18:16:31.238 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.9 um, Read 10 ADC samples: Avg = 35886 (-170.0 uncal um), Error = 0.9 uncal um, Median = 35886 (-170.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 35883 (-170.0 uncal um), Max = 35890 (-170.0 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 18:16:31.238 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35886, posNoise = 4, negNoise = 3
17-03-17 18:16:31.238 -07 000000610 INF: Z Motor: After move to -0.170854, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:16:31.238 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 18:16:31.238 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:16:31.238 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:16:31.238 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:16:31.238 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:16:31.238 -07 000000433 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:16:31.238 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:16:31.238 -07 000000627 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:16:31.238 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:16:31.238 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 18:16:31.238 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:16:31.238 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:16:31.238 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:16:31.248 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 18:16:31.248 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:16:31.248 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 18:16:31.248 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:16:31.248 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 18:16:31.248 -07 000000433 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 18:16:31.258 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 18:16:31.258 -07 000000627 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 18:16:31.258 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 392 392 188 188 37500 150\n [Camera]
17-03-17 18:16:31.458 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:16:31.578 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:16:31.578 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 10. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=93, R2=102, Total=195. Warn if over 250 bubbles per interval.
17-03-17 18:16:31.848 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 584
17-03-17 18:16:31.848 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 584
17-03-17 18:16:31.848 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:16:31.848 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:16:31.848 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 1055068208, 0x0, 391868352) start.
17-03-17 18:16:31.848 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 584
17-03-17 18:16:31.858 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 584
17-03-17 18:16:31.858 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:16:31.978 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:16:31.978 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) start.
17-03-17 18:16:32.038 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37500 777
17-03-17 18:16:32.188 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP turning grn on 927
17-03-17 18:16:32.238 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 1055068208, 0x0, 391868352) end. Duration was 383 ms.
17-03-17 18:16:32.238 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 18:16:32.238 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:16:32.238 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:16:32.238 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 18:16:32.338 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) end. Duration was 367 ms.
17-03-17 18:16:32.338 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 367 ms.
17-03-17 18:16:32.338 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:16:32.348 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:16:32.348 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 498 ms.
17-03-17 18:16:32.378 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1115
17-03-17 18:16:32.378 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1115
17-03-17 18:16:32.378 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:16:32.388 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1115
17-03-17 18:16:32.388 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1115
17-03-17 18:16:32.388 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:16:32.388 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:16:32.388 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 2485095640, 0x0, 418435064) start.
17-03-17 18:16:32.388 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:16:32.388 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-17 18:16:32.568 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP 1307
17-03-17 18:16:32.568 -07 000000448 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:16:32.578 -07 000000610 INF: FPGA: 'CAMDBLSNAP 392 392 188 188 37500 150' command took 2 ms to send, 1309 ms to get response, and 1315 ms overall
17-03-17 18:16:32.578 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 18:16:32.578 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 6 at Y-position 63.224609375, Z-Position -0.170862628930369. ------
17-03-17 18:16:32.578 -07 000000433 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:16:32.578 -07 000000478 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.0626 mm, moving Z to -0.17733 mm
17-03-17 18:16:32.578 -07 000000478 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:16:32.578 -07 000000448 INF: Y Motor: Entering MoveAbsStepped (target = 102500 steps, sync = True, waitForSettling = True)
17-03-17 18:16:32.588 -07 000000448 INF: Y Motor: Moving to 64.0626 mm, started at 63.2246 mm, delta = 0.8380 mm
17-03-17 18:16:32.588 -07 000000448 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:16:32.758 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 2485095640, 0x0, 418435064) end. Duration was 376 ms.
17-03-17 18:16:32.758 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-17 18:16:32.758 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:16:32.768 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 376 ms.
17-03-17 18:16:32.768 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-17 18:16:32.768 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:16:32.768 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:16:32.768 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:16:32.768 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 18:16:32.768 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 18:16:33.248 -07 000000502 INF: Z Motor: Entering MoveAbsStepped (DAC = 38739, sync = True, waitForSettling = False)
17-03-17 18:16:33.248 -07 000000502 INF: Z Motor: Moving to -0.177336 mm, started at -0.170863 mm, distance = -6.47 um
17-03-17 18:16:33.248 -07 000000502 INF: FPGA: Xmit ZDACW 38739\n [Z Motor]
17-03-17 18:16:33.288 -07 000000626 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:16:33.288 -07 000000626 INF: FPGA: Recv YRDPOS 129485
17-03-17 18:16:33.288 -07 000000626 INF: FPGA: Recv ZDACW
17-03-17 18:16:33.288 -07 000000502 INF: FPGA: 'ZDACW 38739' command took 0 ms to send, 38 ms to get response, and 46 ms overall
17-03-17 18:16:33.288 -07 000000502 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:16:33.288 -07 000000448 INF: FPGA: 'YRDPOS' command took 0 ms to send, 698 ms to get response, and 708 ms overall
17-03-17 18:16:33.288 -07 000000448 INF: Y Motor: Encoder = 129485 = motor step 101160.2 = 63.2251 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:16:33.298 -07 000000433 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 708 ms to get response, and 713 ms overall
17-03-17 18:16:33.298 -07 000000433 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:16:33.298 -07 000000626 INF: FPGA: Recv ZDACR 38739
17-03-17 18:16:33.298 -07 000000502 INF: FPGA: 'ZDACR' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 18:16:33.298 -07 000000502 INF: Z Motor: MoveAbsStepped took 50 ms (did NOT wait for settling yet))
17-03-17 18:16:33.298 -07 000000448 INF: Y Motor: Last commanded position = 63.2326 mm (101172.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:16:33.298 -07 000000448 INF: Y Motor: Moving 1340 steps-16
17-03-17 18:16:33.308 -07 000000448 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:16:33.498 -07 000000415 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:16:33.498 -07 000000433 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:16:33.678 -07 000000433 INF: FPGA: Recv YMVTILE
17-03-17 18:16:33.678 -07 000000448 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 385 ms overall
17-03-17 18:16:33.718 -07 000000448 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:16:33.718 -07 000000627 INF: FPGA: Recv YRDPOS 131189
17-03-17 18:16:33.728 -07 000000448 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:16:33.728 -07 000000448 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:16:33.728 -07 000000448 INF: Y Motor: Position error before settling (table move) = -11 encoder counts (-0.005 mm)
17-03-17 18:16:33.728 -07 000000448 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 386 ms, distance = 0.838 mm, average velocity = 2.171 mm/sec
17-03-17 18:16:34.428 -07 000000415 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 11, FrontChillerTemperature: 4.027603,
17-03-17 18:16:34.678 -07 000000448 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:16:34.678 -07 000000627 INF: FPGA: Recv YRDPOS 131190
17-03-17 18:16:34.688 -07 000000448 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:16:34.688 -07 000000448 INF: Y Motor: Encoder = 131190 = motor step 102492.2 = 64.0576 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:16:34.698 -07 000000448 INF: Y Motor: After move to 64.062607, error = -0.004990, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:16:34.698 -07 000000448 INF: Y Motor: Position error after settling (table move) = -10 encoder counts (-0.005 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 18:16:34.698 -07 000000448 INF: Y Motor: Moved to 64.0576 after 2115 ms (table move)
17-03-17 18:16:34.708 -07 000000478 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177336 mm (DAC = 38739)
17-03-17 18:16:34.708 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:16:34.708 -07 000000415 INF: FPGA: Recv ZSGSRD 36898
17-03-17 18:16:34.718 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:16:34.718 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:16:34.718 -07 000000433 INF: FPGA: Recv ZSGSRD 36899
17-03-17 18:16:34.728 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:16:34.728 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:16:34.728 -07 000000502 INF: FPGA: Recv ZSGSRD 36892
17-03-17 18:16:34.738 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:16:34.738 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:16:34.738 -07 000000433 INF: FPGA: Recv ZSGSRD 36900
17-03-17 18:16:34.748 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:16:34.748 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:16:34.748 -07 000000502 INF: FPGA: Recv ZSGSRD 36895
17-03-17 18:16:34.758 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:16:34.758 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:16:34.758 -07 000000448 INF: FPGA: Recv ZSGSRD 36886
17-03-17 18:16:34.768 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:16:34.768 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:16:34.768 -07 000000627 INF: FPGA: Recv ZSGSRD 36890
17-03-17 18:16:34.778 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:16:34.778 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:16:34.778 -07 000000569 INF: FPGA: Recv ZSGSRD 36892
17-03-17 18:16:34.788 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:16:34.788 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:16:34.788 -07 000000627 INF: FPGA: Recv ZSGSRD 36888
17-03-17 18:16:34.798 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:16:34.798 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:16:34.798 -07 000000502 INF: FPGA: Recv ZSGSRD 36892
17-03-17 18:16:34.808 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:16:34.808 -07 000000478 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:16:34.808 -07 000000448 INF: FPGA: Recv ZPIEZORD 33140
17-03-17 18:16:34.818 -07 000000478 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:16:34.818 -07 000000478 INF: Z Motor: Piezo is near 50.8 V (nominally 0 to 100 V), expect near 59.1 V, since DAC is at 5.911 V. Piezo Error = -8.3 V.
17-03-17 18:16:34.818 -07 000000478 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.3 um, Read 10 ADC samples: Avg = 36893 (-176.4 uncal um), Error = 0.9 uncal um, Median = 36892 (-176.4 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 36886 (-176.4 uncal um), Max = 36900 (-176.5 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 18:16:34.818 -07 000000478 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36893, posNoise = 7, negNoise = 7
17-03-17 18:16:34.818 -07 000000478 INF: Z Motor: After move to -0.177336, error = 0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:16:34.818 -07 000000478 INF: Z Motor: Settle wait time = 1458 ms, measure time = 110 ms (allowed 150 ms), total time = 1568 ms
17-03-17 18:16:34.818 -07 000000478 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-17 18:16:34.858 -07 000000478 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2274 ms
17-03-17 18:16:34.858 -07 000000478 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:16:34.858 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:16:34.858 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:16:34.858 -07 000000627 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:16:34.858 -07 000000478 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:16:34.858 -07 000000448 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:16:34.858 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:16:34.858 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:16:34.858 -07 000000448 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:16:34.868 -07 000000448 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:16:34.868 -07 000000448 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:16:34.868 -07 000000448 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 18:16:34.868 -07 000000448 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-17 18:16:34.878 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:16:34.918 -07 000000569 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:16:35.118 -07 000000415 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:16:35.118 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:16:35.118 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:16:35.118 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 656674232, 0x0, 559484976) start.
17-03-17 18:16:35.158 -07 000000627 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:16:35.158 -07 000000433 INF: FPGA: Recv CAMSNAP
17-03-17 18:16:35.158 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 277 ms to get response, and 284 ms overall
17-03-17 18:16:35.238 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 656674232, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 18:16:35.238 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:16:35.238 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-17 18:16:35.238 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 18:16:35.258 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:16:35.258 -07 000000478 INF: Autofocus start
17-03-17 18:16:35.258 -07 000000478 INF: MeasureProfile start
17-03-17 18:16:35.258 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:16:35.268 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 18:16:35.268 -07 000000431 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:16:35.278 -07 000000478 INF: MeasureProfile done
17-03-17 18:16:35.278 -07 000000478 INF: X=-48  Z correction [um]=-0.3191189
17-03-17 18:16:35.278 -07 000000478 INF: Autofocus finished
17-03-17 18:16:35.468 -07 000000415 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:16:35.468 -07 000000431 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:16:35.468 -07 000000610 INF: ------------ Scan Snapping tile 6 at Y-position 64.0576171875, Z-position -0.177331810557122. ----------
17-03-17 18:16:35.478 -07 000000610 INF: Cycle	11	Tile	6	Exposure Settings		A	392	G	188	T	188	C	392
17-03-17 18:16:35.478 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37182, sync = True, waitForSettling = True)
17-03-17 18:16:35.478 -07 000000610 INF: Z Motor: Moving to -0.170208 mm, started at -0.177332 mm, distance = 7.12 um
17-03-17 18:16:35.478 -07 000000610 INF: FPGA: Xmit ZDACW 37182\n [Z Motor]
17-03-17 18:16:35.478 -07 000000627 INF: FPGA: Recv ZDACW
17-03-17 18:16:35.488 -07 000000610 INF: FPGA: 'ZDACW 37182' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:16:35.488 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:16:35.488 -07 000000415 INF: FPGA: Recv ZDACR 37182
17-03-17 18:16:35.498 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:16:35.498 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:16:35.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:16:35.648 -07 000000569 INF: FPGA: Recv ZSGSRD 35785
17-03-17 18:16:35.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:16:35.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:16:35.658 -07 000000433 INF: FPGA: Recv ZSGSRD 35783
17-03-17 18:16:35.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:16:35.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:16:35.668 -07 000000448 INF: FPGA: Recv ZSGSRD 35786
17-03-17 18:16:35.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:16:35.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:16:35.678 -07 000000448 INF: FPGA: Recv ZSGSRD 35786
17-03-17 18:16:35.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:16:35.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:16:35.688 -07 000000502 INF: FPGA: Recv ZSGSRD 35788
17-03-17 18:16:35.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:16:35.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:16:35.698 -07 000000627 INF: FPGA: Recv ZSGSRD 35784
17-03-17 18:16:35.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:16:35.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:16:35.708 -07 000000448 INF: FPGA: Recv ZSGSRD 35779
17-03-17 18:16:35.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:16:35.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:16:35.718 -07 000000431 INF: FPGA: Recv ZSGSRD 35790
17-03-17 18:16:35.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:16:35.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:16:35.728 -07 000000433 INF: FPGA: Recv ZSGSRD 35784
17-03-17 18:16:35.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:16:35.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:16:35.738 -07 000000626 INF: FPGA: Recv ZSGSRD 35780
17-03-17 18:16:35.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:16:35.748 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:16:35.748 -07 000000433 INF: FPGA: Recv ZPIEZORD 31637
17-03-17 18:16:35.758 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:16:35.758 -07 000000610 INF: Z Motor: Piezo is near 47.6 V (nominally 0 to 100 V), expect near 56.7 V, since DAC is at 5.674 V. Piezo Error = -9.2 V.
17-03-17 18:16:35.758 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.2 um, Read 10 ADC samples: Avg = 35784 (-169.3 uncal um), Error = 0.9 uncal um, Median = 35784 (-169.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35779 (-169.3 uncal um), Max = 35790 (-169.4 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 18:16:35.758 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35784, posNoise = 6, negNoise = 5
17-03-17 18:16:35.758 -07 000000610 INF: Z Motor: After move to -0.170208, error = 0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:16:35.758 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 18:16:35.758 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:16:35.758 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:16:35.758 -07 000000431 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:16:35.758 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:16:35.758 -07 000000627 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:16:35.758 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:16:35.758 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:16:35.758 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:16:35.758 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:16:35.758 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:16:35.758 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:16:35.758 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:16:35.768 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 18:16:35.768 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:16:35.768 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 18:16:35.768 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:16:35.778 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 18:16:35.778 -07 000000627 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 18:16:35.778 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 18:16:35.778 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 18:16:35.778 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 392 392 188 188 37358 150\n [Camera]
17-03-17 18:16:35.978 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:16:36.368 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 584
17-03-17 18:16:36.368 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 584
17-03-17 18:16:36.368 -07 000000433 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:16:36.368 -07 000000433 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:16:36.368 -07 000000433 INF: Camera: sBCa_ReadImage(785074288, 1090490472, 0x0, 391868352) start.
17-03-17 18:16:36.368 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 584
17-03-17 18:16:36.368 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 584
17-03-17 18:16:36.378 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:16:36.488 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:16:36.488 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) start.
17-03-17 18:16:36.558 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37358 777
17-03-17 18:16:36.578 -07 000000627 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:16:36.578 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 10. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=93, R2=102, Total=195. Warn if over 250 bubbles per interval.
17-03-17 18:16:36.718 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP turning grn on 927
17-03-17 18:16:36.758 -07 000000433 INF: Camera: sBCa_ReadImage(785074288, 1090490472, 0x0, 391868352) end. Duration was 391 ms.
17-03-17 18:16:36.758 -07 000000433 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-17 18:16:36.758 -07 000000433 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:16:36.768 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:16:36.768 -07 000000433 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-17 18:16:36.878 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) end. Duration was 395 ms.
17-03-17 18:16:36.878 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 18:16:36.878 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:16:36.888 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:16:36.888 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 516 ms.
17-03-17 18:16:36.898 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1115
17-03-17 18:16:36.898 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1115
17-03-17 18:16:36.898 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:16:36.908 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1115
17-03-17 18:16:36.908 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1115
17-03-17 18:16:36.908 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:16:36.908 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:16:36.908 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-17 18:16:36.918 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:16:36.918 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 1055068208, 0x0, 418435064) start.
17-03-17 18:16:37.088 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP 1307
17-03-17 18:16:37.088 -07 000000415 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:16:37.088 -07 000000610 INF: FPGA: 'CAMDBLSNAP 392 392 188 188 37358 150' command took 2 ms to send, 1309 ms to get response, and 1314 ms overall
17-03-17 18:16:37.098 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 18:16:37.098 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 7 at Y-position 64.0576171875, Z-Position -0.170207359291909. ------
17-03-17 18:16:37.098 -07 000000448 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:16:37.098 -07 000000431 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.8926 mm, moving Z to -0.17658 mm
17-03-17 18:16:37.098 -07 000000431 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:16:37.108 -07 000000459 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:16:37.108 -07 000000448 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:16:37.108 -07 000000448 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:16:37.108 -07 000000415 INF: Z Motor: Entering MoveAbsStepped (DAC = 38575, sync = True, waitForSettling = False)
17-03-17 18:16:37.108 -07 000000415 INF: Z Motor: Moving to -0.176585 mm, started at -0.170207 mm, distance = -6.38 um
17-03-17 18:16:37.108 -07 000000569 INF: Y Motor: Entering MoveAbsStepped (target = 103828 steps, sync = True, waitForSettling = True)
17-03-17 18:16:37.108 -07 000000569 INF: Y Motor: Moving to 64.8926 mm, started at 64.0576 mm, delta = 0.8350 mm
17-03-17 18:16:37.118 -07 000000415 INF: FPGA: Xmit ZDACW 38575\n [Z Motor]
17-03-17 18:16:37.118 -07 000000482 INF: FPGA: Recv ZDACW
17-03-17 18:16:37.128 -07 000000415 INF: FPGA: 'ZDACW 38575' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-17 18:16:37.128 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:16:37.128 -07 000000627 INF: FPGA: Recv YRDPOS 131190
17-03-17 18:16:37.138 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-17 18:16:37.138 -07 000000569 INF: Y Motor: Encoder = 131190 = motor step 102492.2 = 64.0576 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:16:37.138 -07 000000569 INF: Y Motor: Last commanded position = 64.0626 mm (102500.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:16:37.138 -07 000000569 INF: Y Motor: Moving 1336 steps-11
17-03-17 18:16:37.138 -07 000000415 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:16:37.138 -07 000000618 INF: FPGA: Recv ZDACR 38575
17-03-17 18:16:37.148 -07 000000415 INF: FPGA: 'ZDACR' command took 1 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 18:16:37.148 -07 000000415 INF: Z Motor: MoveAbsStepped took 38 ms (did NOT wait for settling yet))
17-03-17 18:16:37.148 -07 000000569 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:16:37.308 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 397 ms.
17-03-17 18:16:37.308 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 18:16:37.308 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:16:37.308 -07 000000561 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:16:37.308 -07 000000448 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:16:37.308 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 1055068208, 0x0, 418435064) end. Duration was 395 ms.
17-03-17 18:16:37.308 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 18:16:37.308 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:16:37.308 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:16:37.308 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms.
17-03-17 18:16:37.318 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:16:37.318 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 416 ms.
17-03-17 18:16:37.518 -07 000000429 INF: FPGA: Recv YMVTILE
17-03-17 18:16:37.528 -07 000000569 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 369 ms to get response, and 389 ms overall
17-03-17 18:16:37.558 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:16:37.558 -07 000000415 INF: FPGA: Recv YRDPOS 132873
17-03-17 18:16:37.568 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:16:37.568 -07 000000569 INF: Y Motor: Encoder = 132873 = motor step 103807.0 = 64.8794 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:16:37.568 -07 000000569 INF: Y Motor: Position error before settling (table move) = -27 encoder counts (-0.013 mm)
17-03-17 18:16:37.568 -07 000000569 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 389 ms, distance = 0.835 mm, average velocity = 2.147 mm/sec
17-03-17 18:16:38.518 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:16:38.518 -07 000000482 INF: FPGA: Recv YRDPOS 132873
17-03-17 18:16:38.528 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:16:38.528 -07 000000569 INF: Y Motor: Encoder = 132873 = motor step 103807.0 = 64.8794 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:16:38.538 -07 000000569 INF: Y Motor: After move to 64.892609, error = -0.013214, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:16:38.548 -07 000000569 INF: Y Motor: Position error after settling (table move) = -27 encoder counts (-0.013 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:16:38.548 -07 000000569 INF: Y Motor: Moved to 64.8794 after 1437 ms (table move)
17-03-17 18:16:38.548 -07 000000431 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176585 mm (DAC = 38575)
17-03-17 18:16:38.548 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:16:38.548 -07 000000569 INF: FPGA: Recv ZSGSRD 36784
17-03-17 18:16:38.558 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:16:38.558 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:16:38.558 -07 000000569 INF: FPGA: Recv ZSGSRD 36777
17-03-17 18:16:38.568 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:16:38.568 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:16:38.568 -07 000000429 INF: FPGA: Recv ZSGSRD 36779
17-03-17 18:16:38.578 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:16:38.578 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:16:38.578 -07 000000627 INF: FPGA: Recv ZSGSRD 36787
17-03-17 18:16:38.588 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:16:38.588 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:16:38.588 -07 000000627 INF: FPGA: Recv ZSGSRD 36782
17-03-17 18:16:38.598 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:16:38.598 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:16:38.598 -07 000000415 INF: FPGA: Recv ZSGSRD 36771
17-03-17 18:16:38.608 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:16:38.608 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:16:38.608 -07 000000415 INF: FPGA: Recv ZSGSRD 36777
17-03-17 18:16:38.618 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:16:38.618 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:16:38.618 -07 000000415 INF: FPGA: Recv ZSGSRD 36771
17-03-17 18:16:38.628 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:16:38.628 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:16:38.628 -07 000000429 INF: FPGA: Recv ZSGSRD 36778
17-03-17 18:16:38.638 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:16:38.638 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:16:38.638 -07 000000459 INF: FPGA: Recv ZSGSRD 36779
17-03-17 18:16:38.648 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:16:38.648 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:16:38.648 -07 000000459 INF: FPGA: Recv ZPIEZORD 32925
17-03-17 18:16:38.658 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:16:38.658 -07 000000431 INF: Z Motor: Piezo is near 50.3 V (nominally 0 to 100 V), expect near 58.9 V, since DAC is at 5.886 V. Piezo Error = -8.5 V.
17-03-17 18:16:38.658 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.6 um, Read 10 ADC samples: Avg = 36778 (-175.7 uncal um), Error = 0.9 uncal um, Median = 36778 (-175.7 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 36771 (-175.7 uncal um), Max = 36787 (-175.8 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 18:16:38.658 -07 000000431 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36778, posNoise = 9, negNoise = 7
17-03-17 18:16:38.658 -07 000000431 INF: Z Motor: After move to -0.176585, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:16:38.658 -07 000000431 INF: Z Motor: Settle wait time = 1441 ms, measure time = 107 ms (allowed 150 ms), total time = 1548 ms
17-03-17 18:16:38.658 -07 000000431 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-17 18:16:38.708 -07 000000431 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1603 ms
17-03-17 18:16:38.708 -07 000000431 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:16:38.708 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:16:38.708 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:16:38.708 -07 000000459 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:16:38.708 -07 000000431 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:16:38.708 -07 000000429 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:16:38.708 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:16:38.718 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 18:16:38.718 -07 000000429 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:16:38.718 -07 000000429 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:16:38.718 -07 000000429 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:16:38.728 -07 000000429 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 18:16:38.728 -07 000000429 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms.
17-03-17 18:16:38.728 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:16:38.778 -07 000000424 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:16:38.978 -07 000000459 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:16:38.978 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:16:38.978 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:16:39.018 -07 000000431 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:16:39.018 -07 000000429 INF: FPGA: Recv CAMSNAP
17-03-17 18:16:39.018 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 283 ms to get response, and 285 ms overall
17-03-17 18:16:39.308 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 656674232, 0x0, 559484976) start.
17-03-17 18:16:39.438 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 656674232, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 18:16:39.438 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:16:39.438 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 18:16:39.438 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 460 ms.
17-03-17 18:16:39.518 -07 000000478 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:16:39.518 -07 000000431 INF: Autofocus start
17-03-17 18:16:39.518 -07 000000431 INF: MeasureProfile start
17-03-17 18:16:39.518 -07 000000424 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:16:39.528 -07 000000478 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:16:39.528 -07 000000478 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:16:39.528 -07 000000431 INF: MeasureProfile done
17-03-17 18:16:39.528 -07 000000431 INF: X=16  Z correction [um]=0.01042744
17-03-17 18:16:39.528 -07 000000431 INF: Autofocus finished
17-03-17 18:16:39.728 -07 000000429 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:16:39.728 -07 000000478 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:16:39.728 -07 000000610 INF: ------------ Scan Snapping tile 7 at Y-position 64.87939453125, Z-position -0.176593026160819. ----------
17-03-17 18:16:39.728 -07 000000610 INF: Cycle	11	Tile	7	Exposure Settings		A	392	G	188	T	188	C	392
17-03-17 18:16:39.738 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37090, sync = True, waitForSettling = True)
17-03-17 18:16:39.738 -07 000000610 INF: Z Motor: Moving to -0.169787 mm, started at -0.176593 mm, distance = 6.81 um
17-03-17 18:16:39.738 -07 000000610 INF: FPGA: Xmit ZDACW 37090\n [Z Motor]
17-03-17 18:16:39.738 -07 000000429 INF: FPGA: Recv ZDACW
17-03-17 18:16:39.748 -07 000000610 INF: FPGA: 'ZDACW 37090' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:16:39.748 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:16:39.748 -07 000000502 INF: FPGA: Recv ZDACR 37090
17-03-17 18:16:39.758 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:16:39.758 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:16:39.788 -07 000000429 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 11, FrontChillerTemperature: 4.020806,
17-03-17 18:16:39.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:16:39.908 -07 000000429 INF: FPGA: Recv ZSGSRD 35721
17-03-17 18:16:39.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:16:39.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:16:39.918 -07 000000433 INF: FPGA: Recv ZSGSRD 35724
17-03-17 18:16:39.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:16:39.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:16:39.928 -07 000000478 INF: FPGA: Recv ZSGSRD 35719
17-03-17 18:16:39.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:16:39.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:16:39.938 -07 000000626 INF: FPGA: Recv ZSGSRD 35717
17-03-17 18:16:39.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:16:39.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:16:39.948 -07 000000431 INF: FPGA: Recv ZSGSRD 35717
17-03-17 18:16:39.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:16:39.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:16:39.958 -07 000000502 INF: FPGA: Recv ZSGSRD 35721
17-03-17 18:16:39.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:16:39.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:16:39.968 -07 000000478 INF: FPGA: Recv ZSGSRD 35722
17-03-17 18:16:39.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:16:39.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:16:39.978 -07 000000433 INF: FPGA: Recv ZSGSRD 35716
17-03-17 18:16:39.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:16:39.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:16:39.988 -07 000000424 INF: FPGA: Recv ZSGSRD 35725
17-03-17 18:16:39.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:16:39.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:16:39.998 -07 000000626 INF: FPGA: Recv ZSGSRD 35721
17-03-17 18:16:40.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:16:40.008 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:16:40.008 -07 000000478 INF: FPGA: Recv ZPIEZORD 31535
17-03-17 18:16:40.018 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:16:40.018 -07 000000610 INF: Z Motor: Piezo is near 47.4 V (nominally 0 to 100 V), expect near 56.6 V, since DAC is at 5.660 V. Piezo Error = -9.2 V.
17-03-17 18:16:40.018 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.8 um, Read 10 ADC samples: Avg = 35720 (-168.9 uncal um), Error = 0.9 uncal um, Median = 35721 (-168.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35716 (-168.9 uncal um), Max = 35725 (-169.0 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 18:16:40.018 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35720, posNoise = 5, negNoise = 4
17-03-17 18:16:40.018 -07 000000610 INF: Z Motor: After move to -0.169787, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:16:40.018 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 18:16:40.018 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:16:40.018 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:16:40.018 -07 000000433 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:16:40.018 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:16:40.018 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:16:40.018 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:16:40.018 -07 000000478 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:16:40.018 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:16:40.018 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:16:40.018 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:16:40.018 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:16:40.018 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:16:40.028 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 18:16:40.028 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:16:40.028 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-17 18:16:40.028 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:16:40.038 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 12 ms.
17-03-17 18:16:40.038 -07 000000478 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 18 ms.
17-03-17 18:16:40.038 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 13 ms.
17-03-17 18:16:40.038 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 19 ms.
17-03-17 18:16:40.038 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 392 392 188 188 37267 150\n [Camera]
17-03-17 18:16:40.248 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:16:40.638 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 584
17-03-17 18:16:40.638 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 584
17-03-17 18:16:40.638 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:16:40.638 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:16:40.638 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2485095640, 0x0, 391868352) start.
17-03-17 18:16:40.638 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 584
17-03-17 18:16:40.638 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 584
17-03-17 18:16:40.638 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:16:40.638 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:16:40.638 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 1125912736, 0x0, 418435064) start.
17-03-17 18:16:40.828 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37267 777
17-03-17 18:16:40.978 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP turning grn on 927
17-03-17 18:16:41.028 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 1125912736, 0x0, 418435064) end. Duration was 386 ms.
17-03-17 18:16:41.028 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 18:16:41.028 -07 000000433 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:16:41.028 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:16:41.038 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2485095640, 0x0, 391868352) end. Duration was 396 ms.
17-03-17 18:16:41.038 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 18:16:41.038 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:16:41.038 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-17 18:16:41.038 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:16:41.038 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 18:16:41.168 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1115
17-03-17 18:16:41.168 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1115
17-03-17 18:16:41.168 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:16:41.278 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1115
17-03-17 18:16:41.278 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1115
17-03-17 18:16:41.278 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:16:41.278 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:16:41.278 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 18:16:41.288 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:16:41.288 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-17 18:16:41.358 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP 1308
17-03-17 18:16:41.358 -07 000000482 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:16:41.358 -07 000000610 INF: FPGA: 'CAMDBLSNAP 392 392 188 188 37267 150' command took 2 ms to send, 1305 ms to get response, and 1317 ms overall
17-03-17 18:16:41.358 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 18:16:41.358 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 8 at Y-position 64.87939453125, Z-Position -0.169796209714836. ------
17-03-17 18:16:41.368 -07 000000512 INF: Y Motor: MoveYZ optimized starting. Moving Y to 65.7226 mm, moving Z to -0.17624 mm
17-03-17 18:16:41.368 -07 000000512 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:16:41.368 -07 000000448 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:16:41.368 -07 000000502 INF: Y Motor: Entering MoveAbsStepped (target = 105156 steps, sync = True, waitForSettling = True)
17-03-17 18:16:41.368 -07 000000502 INF: Y Motor: Moving to 65.7226 mm, started at 64.8794 mm, delta = 0.8432 mm
17-03-17 18:16:41.368 -07 000000482 INF: Z Motor: Entering MoveAbsStepped (DAC = 38499, sync = True, waitForSettling = False)
17-03-17 18:16:41.368 -07 000000482 INF: Z Motor: Moving to -0.176237 mm, started at -0.169796 mm, distance = -6.44 um
17-03-17 18:16:41.368 -07 000000429 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:16:41.378 -07 000000448 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:16:41.378 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:16:41.378 -07 000000424 INF: FPGA: Recv YRDPOS 132874
17-03-17 18:16:41.388 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-17 18:16:41.388 -07 000000502 INF: Y Motor: Encoder = 132874 = motor step 103807.8 = 64.8799 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:16:41.388 -07 000000482 INF: FPGA: Xmit ZDACW 38499\n [Z Motor]
17-03-17 18:16:41.388 -07 000000424 INF: FPGA: Recv ZDACW
17-03-17 18:16:41.388 -07 000000502 INF: Y Motor: Last commanded position = 64.8926 mm (103828.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:16:41.388 -07 000000502 INF: Y Motor: Moving 1348 steps-27
17-03-17 18:16:41.398 -07 000000448 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:16:41.398 -07 000000482 INF: FPGA: 'ZDACW 38499' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-17 18:16:41.408 -07 000000502 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:16:41.418 -07 000000482 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:16:41.418 -07 000000569 INF: FPGA: Recv ZDACR 38499
17-03-17 18:16:41.428 -07 000000482 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:16:41.428 -07 000000482 INF: Z Motor: MoveAbsStepped took 56 ms (did NOT wait for settling yet))
17-03-17 18:16:41.578 -07 000000618 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:16:41.578 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 10. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=93, R2=102, Total=195. Warn if over 250 bubbles per interval.
17-03-17 18:16:41.598 -07 000000627 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:16:41.598 -07 000000448 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 18:16:41.678 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 396 ms.
17-03-17 18:16:41.678 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 18:16:41.678 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:16:41.688 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 401 ms.
17-03-17 18:16:41.688 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 18:16:41.688 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:16:41.688 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:16:41.688 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:16:41.688 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 520 ms.
17-03-17 18:16:41.688 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-17 18:16:41.778 -07 000000424 INF: FPGA: Recv YMVTILE
17-03-17 18:16:41.778 -07 000000502 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 392 ms overall
17-03-17 18:16:41.818 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:16:41.818 -07 000000431 INF: FPGA: Recv YRDPOS 134584
17-03-17 18:16:41.828 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:16:41.828 -07 000000502 INF: Y Motor: Encoder = 134584 = motor step 105143.8 = 65.7148 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:16:41.828 -07 000000502 INF: Y Motor: Position error before settling (table move) = -16 encoder counts (-0.008 mm)
17-03-17 18:16:41.828 -07 000000502 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 393 ms, distance = 0.843 mm, average velocity = 2.146 mm/sec
17-03-17 18:16:42.778 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:16:42.778 -07 000000433 INF: FPGA: Recv YRDPOS 134584
17-03-17 18:16:42.788 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:16:42.788 -07 000000502 INF: Y Motor: Encoder = 134584 = motor step 105143.8 = 65.7148 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:16:42.798 -07 000000502 INF: Y Motor: After move to 65.722610, error = -0.007767, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:16:42.808 -07 000000502 INF: Y Motor: Position error after settling (table move) = -16 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:16:42.808 -07 000000502 INF: Y Motor: Moved to 65.7148 after 1436 ms (table move)
17-03-17 18:16:42.808 -07 000000512 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176237 mm (DAC = 38499)
17-03-17 18:16:42.808 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:16:42.808 -07 000000561 INF: FPGA: Recv ZSGSRD 36726
17-03-17 18:16:42.818 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:16:42.818 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:16:42.818 -07 000000433 INF: FPGA: Recv ZSGSRD 36719
17-03-17 18:16:42.828 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:16:42.828 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:16:42.828 -07 000000502 INF: FPGA: Recv ZSGSRD 36721
17-03-17 18:16:42.838 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:16:42.838 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:16:42.838 -07 000000626 INF: FPGA: Recv ZSGSRD 36727
17-03-17 18:16:42.848 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:16:42.848 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:16:42.848 -07 000000431 INF: FPGA: Recv ZSGSRD 36721
17-03-17 18:16:42.858 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:16:42.858 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:16:42.858 -07 000000502 INF: FPGA: Recv ZSGSRD 36727
17-03-17 18:16:42.868 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:16:42.868 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:16:42.868 -07 000000569 INF: FPGA: Recv ZSGSRD 36729
17-03-17 18:16:42.878 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:16:42.878 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:16:42.878 -07 000000626 INF: FPGA: Recv ZSGSRD 36722
17-03-17 18:16:42.888 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:16:42.888 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:16:42.888 -07 000000618 INF: FPGA: Recv ZSGSRD 36718
17-03-17 18:16:42.898 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:16:42.898 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:16:42.898 -07 000000627 INF: FPGA: Recv ZSGSRD 36722
17-03-17 18:16:42.908 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:16:42.908 -07 000000512 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:16:42.908 -07 000000626 INF: FPGA: Recv ZPIEZORD 32910
17-03-17 18:16:42.918 -07 000000512 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:16:42.918 -07 000000512 INF: Z Motor: Piezo is near 50.3 V (nominally 0 to 100 V), expect near 58.7 V, since DAC is at 5.875 V. Piezo Error = -8.4 V.
17-03-17 18:16:42.918 -07 000000512 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.2 um, Read 10 ADC samples: Avg = 36723 (-175.3 uncal um), Error = 0.9 uncal um, Median = 36722 (-175.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 36718 (-175.3 uncal um), Max = 36729 (-175.4 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 18:16:42.918 -07 000000512 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36723, posNoise = 6, negNoise = 5
17-03-17 18:16:42.918 -07 000000512 INF: Z Motor: After move to -0.176237, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:16:42.918 -07 000000512 INF: Z Motor: Settle wait time = 1438 ms, measure time = 108 ms (allowed 150 ms), total time = 1546 ms
17-03-17 18:16:42.918 -07 000000512 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-17 18:16:42.968 -07 000000512 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1599 ms
17-03-17 18:16:42.968 -07 000000512 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:16:42.968 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:16:42.968 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:16:42.968 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:16:42.968 -07 000000433 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:16:42.968 -07 000000561 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:16:42.968 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:16:42.968 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:16:42.968 -07 000000561 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:16:42.978 -07 000000561 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:16:42.978 -07 000000561 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:16:42.988 -07 000000561 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-17 18:16:42.988 -07 000000561 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-17 18:16:42.988 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:16:43.028 -07 000000502 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:16:43.228 -07 000000569 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:16:43.228 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:16:43.228 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:16:43.268 -07 000000433 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:16:43.268 -07 000000626 INF: FPGA: Recv CAMSNAP
17-03-17 18:16:43.268 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 278 ms to get response, and 285 ms overall
17-03-17 18:16:44.108 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 608668944, 0x0, 559484976) start.
17-03-17 18:16:44.228 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 608668944, 0x0, 559484976) end. Duration was 122 ms.
17-03-17 18:16:44.228 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:16:44.228 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 18:16:44.228 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 999 ms.
17-03-17 18:16:44.268 -07 000000618 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:16:44.268 -07 000000431 INF: Autofocus start
17-03-17 18:16:44.268 -07 000000431 INF: MeasureProfile start
17-03-17 18:16:44.268 -07 000000433 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:16:44.278 -07 000000618 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:16:44.278 -07 000000618 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:16:44.278 -07 000000431 INF: MeasureProfile done
17-03-17 18:16:44.278 -07 000000431 INF: X=16  Z correction [um]=0.01042744
17-03-17 18:16:44.278 -07 000000431 INF: Autofocus finished
17-03-17 18:16:44.478 -07 000000478 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:16:44.478 -07 000000618 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:16:44.478 -07 000000610 INF: ------------ Scan Snapping tile 8 at Y-position 65.71484375, Z-position -0.176239694493023. ----------
17-03-17 18:16:44.478 -07 000000610 INF: Cycle	11	Tile	8	Exposure Settings		A	392	G	188	T	188	C	392
17-03-17 18:16:44.488 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37014, sync = True, waitForSettling = True)
17-03-17 18:16:44.488 -07 000000610 INF: Z Motor: Moving to -0.169439 mm, started at -0.176240 mm, distance = 6.80 um
17-03-17 18:16:44.488 -07 000000610 INF: FPGA: Xmit ZDACW 37014\n [Z Motor]
17-03-17 18:16:44.488 -07 000000478 INF: FPGA: Recv ZDACW
17-03-17 18:16:44.498 -07 000000610 INF: FPGA: 'ZDACW 37014' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:16:44.498 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:16:44.498 -07 000000561 INF: FPGA: Recv ZDACR 37014
17-03-17 18:16:44.508 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:16:44.508 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:16:44.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:16:44.658 -07 000000415 INF: FPGA: Recv ZSGSRD 35671
17-03-17 18:16:44.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:16:44.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:16:44.668 -07 000000627 INF: FPGA: Recv ZSGSRD 35661
17-03-17 18:16:44.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:16:44.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:16:44.678 -07 000000424 INF: FPGA: Recv ZSGSRD 35670
17-03-17 18:16:44.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:16:44.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:16:44.688 -07 000000512 INF: FPGA: Recv ZSGSRD 35666
17-03-17 18:16:44.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:16:44.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:16:44.698 -07 000000626 INF: FPGA: Recv ZSGSRD 35665
17-03-17 18:16:44.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:16:44.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:16:44.708 -07 000000431 INF: FPGA: Recv ZSGSRD 35666
17-03-17 18:16:44.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:16:44.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:16:44.718 -07 000000448 INF: FPGA: Recv ZSGSRD 35667
17-03-17 18:16:44.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:16:44.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:16:44.728 -07 000000415 INF: FPGA: Recv ZSGSRD 35674
17-03-17 18:16:44.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:16:44.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:16:44.738 -07 000000618 INF: FPGA: Recv ZSGSRD 35666
17-03-17 18:16:44.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:16:44.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:16:44.748 -07 000000627 INF: FPGA: Recv ZSGSRD 35667
17-03-17 18:16:44.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:16:44.758 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:16:44.758 -07 000000433 INF: FPGA: Recv ZPIEZORD 31481
17-03-17 18:16:44.768 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:16:44.768 -07 000000610 INF: Z Motor: Piezo is near 47.3 V (nominally 0 to 100 V), expect near 56.5 V, since DAC is at 5.648 V. Piezo Error = -9.2 V.
17-03-17 18:16:44.768 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.4 um, Read 10 ADC samples: Avg = 35667 (-168.6 uncal um), Error = 0.9 uncal um, Median = 35666 (-168.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 35661 (-168.5 uncal um), Max = 35674 (-168.6 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 18:16:44.768 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35667, posNoise = 7, negNoise = 6
17-03-17 18:16:44.768 -07 000000610 INF: Z Motor: After move to -0.169439, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:16:44.768 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 18:16:44.768 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:16:44.768 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:16:44.768 -07 000000431 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:16:44.768 -07 000000627 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:16:44.768 -07 000000459 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:16:44.768 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:16:44.768 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:16:44.768 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:16:44.768 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:16:44.768 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:16:44.768 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:16:44.768 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:16:44.778 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 18:16:44.778 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:16:44.778 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 18:16:44.778 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:16:44.788 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 18:16:44.788 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 18:16:44.788 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 18:16:44.788 -07 000000459 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 18:16:44.788 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 392 392 188 188 37191 150\n [Camera]
17-03-17 18:16:44.988 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:16:45.148 -07 000000429 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 11, FrontChillerTemperature: 4.012614,
17-03-17 18:16:45.388 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 584
17-03-17 18:16:45.388 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 584
17-03-17 18:16:45.388 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:16:45.388 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:16:45.388 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2485095640, 0x0, 391868352) start.
17-03-17 18:16:45.388 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 584
17-03-17 18:16:45.388 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 584
17-03-17 18:16:45.388 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:16:45.388 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:16:45.388 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-17 18:16:45.578 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37191 777
17-03-17 18:16:45.728 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP turning grn on 927
17-03-17 18:16:45.788 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2485095640, 0x0, 391868352) end. Duration was 399 ms.
17-03-17 18:16:45.788 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 18:16:45.788 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:16:45.788 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 398 ms.
17-03-17 18:16:45.788 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-17 18:16:45.788 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:16:45.788 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:16:45.788 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-17 18:16:45.788 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:16:45.798 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-17 18:16:45.918 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1115
17-03-17 18:16:45.918 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1115
17-03-17 18:16:45.918 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:16:46.028 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1115
17-03-17 18:16:46.028 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1115
17-03-17 18:16:46.028 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:16:46.028 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:16:46.028 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-17 18:16:46.028 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:16:46.028 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-17 18:16:46.108 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP 1307
17-03-17 18:16:46.108 -07 000000627 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:16:46.108 -07 000000610 INF: FPGA: 'CAMDBLSNAP 392 392 188 188 37191 150' command took 2 ms to send, 1303 ms to get response, and 1315 ms overall
17-03-17 18:16:46.108 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 18:16:46.108 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 9 at Y-position 65.71484375, Z-Position -0.169455726471323. ------
17-03-17 18:16:46.108 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:16:46.108 -07 000000459 INF: Y Motor: MoveYZ optimized starting. Moving Y to 66.5526 mm, moving Z to -0.17584 mm
17-03-17 18:16:46.108 -07 000000459 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:16:46.118 -07 000000627 INF: Y Motor: Entering MoveAbsStepped (target = 106484 steps, sync = True, waitForSettling = True)
17-03-17 18:16:46.118 -07 000000627 INF: Y Motor: Moving to 66.5526 mm, started at 65.7148 mm, delta = 0.8378 mm
17-03-17 18:16:46.118 -07 000000627 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:16:46.408 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 381 ms.
17-03-17 18:16:46.408 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-17 18:16:46.408 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:16:46.418 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:16:46.418 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 393 ms.
17-03-17 18:16:46.418 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-17 18:16:46.418 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:16:46.418 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 18:16:46.428 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:16:46.428 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 506 ms.
17-03-17 18:16:46.748 -07 000000482 INF: Z Motor: Entering MoveAbsStepped (DAC = 38413, sync = True, waitForSettling = False)
17-03-17 18:16:46.748 -07 000000482 INF: Z Motor: Moving to -0.175843 mm, started at -0.169456 mm, distance = -6.39 um
17-03-17 18:16:46.748 -07 000000482 INF: FPGA: Xmit ZDACW 38413\n [Z Motor]
17-03-17 18:16:47.348 -07 000000448 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:16:47.348 -07 000000448 INF: FPGA: Recv YRDPOS 134585
17-03-17 18:16:47.348 -07 000000448 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:16:47.348 -07 000000448 INF: FPGA: Recv ZDACW
17-03-17 18:16:47.348 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1233 ms to get response, and 1235 ms overall
17-03-17 18:16:47.348 -07 000000482 INF: FPGA: 'ZDACW 38413' command took 0 ms to send, 593 ms to get response, and 600 ms overall
17-03-17 18:16:47.348 -07 000000482 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:16:47.348 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 10. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=93, R2=102, Total=195. Warn if over 250 bubbles per interval.
17-03-17 18:16:47.348 -07 000000627 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1223 ms to get response, and 1232 ms overall
17-03-17 18:16:47.348 -07 000000627 INF: Y Motor: Encoder = 134585 = motor step 105144.5 = 65.7153 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:16:47.348 -07 000000448 INF: FPGA: Recv ZDACR 38413
17-03-17 18:16:47.358 -07 000000482 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 18:16:47.358 -07 000000482 INF: Z Motor: MoveAbsStepped took 606 ms (did NOT wait for settling yet))
17-03-17 18:16:47.358 -07 000000569 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:16:47.358 -07 000000627 INF: Y Motor: Last commanded position = 65.7226 mm (105156.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:16:47.358 -07 000000627 INF: Y Motor: Moving 1340 steps-16
17-03-17 18:16:47.368 -07 000000627 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:16:47.558 -07 000000502 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:16:47.558 -07 000000569 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 209 ms overall
17-03-17 18:16:47.738 -07 000000429 INF: FPGA: Recv YMVTILE
17-03-17 18:16:47.738 -07 000000627 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-17 18:16:47.768 -07 000000627 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:16:47.778 -07 000000448 INF: FPGA: Recv YRDPOS 136273
17-03-17 18:16:47.778 -07 000000627 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 18:16:47.778 -07 000000627 INF: Y Motor: Encoder = 136273 = motor step 106463.3 = 66.5396 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:16:47.778 -07 000000627 INF: Y Motor: Position error before settling (table move) = -27 encoder counts (-0.013 mm)
17-03-17 18:16:47.778 -07 000000627 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 387 ms, distance = 0.838 mm, average velocity = 2.165 mm/sec
17-03-17 18:16:48.728 -07 000000627 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:16:48.728 -07 000000569 INF: FPGA: Recv YRDPOS 136273
17-03-17 18:16:48.738 -07 000000627 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:16:48.738 -07 000000627 INF: Y Motor: Encoder = 136273 = motor step 106463.3 = 66.5396 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:16:48.748 -07 000000627 INF: Y Motor: After move to 66.552605, error = -0.013054, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:16:48.748 -07 000000627 INF: Y Motor: Position error after settling (table move) = -27 encoder counts (-0.013 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:16:48.748 -07 000000627 INF: Y Motor: Moved to 66.5396 after 2638 ms (table move)
17-03-17 18:16:48.758 -07 000000459 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175843 mm (DAC = 38413)
17-03-17 18:16:48.758 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:16:48.758 -07 000000618 INF: FPGA: Recv ZSGSRD 36666
17-03-17 18:16:48.768 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:16:48.768 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:16:48.768 -07 000000626 INF: FPGA: Recv ZSGSRD 36655
17-03-17 18:16:48.778 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:16:48.778 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:16:48.778 -07 000000448 INF: FPGA: Recv ZSGSRD 36660
17-03-17 18:16:48.788 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:16:48.788 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:16:48.788 -07 000000627 INF: FPGA: Recv ZSGSRD 36658
17-03-17 18:16:48.798 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:16:48.798 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:16:48.798 -07 000000431 INF: FPGA: Recv ZSGSRD 36666
17-03-17 18:16:48.808 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:16:48.808 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:16:48.808 -07 000000482 INF: FPGA: Recv ZSGSRD 36667
17-03-17 18:16:48.818 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:16:48.818 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:16:48.818 -07 000000618 INF: FPGA: Recv ZSGSRD 36659
17-03-17 18:16:48.828 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:16:48.828 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:16:48.828 -07 000000627 INF: FPGA: Recv ZSGSRD 36661
17-03-17 18:16:48.838 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:16:48.838 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:16:48.838 -07 000000569 INF: FPGA: Recv ZSGSRD 36661
17-03-17 18:16:48.848 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:16:48.848 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:16:48.848 -07 000000431 INF: FPGA: Recv ZSGSRD 36658
17-03-17 18:16:48.858 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:16:48.858 -07 000000459 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:16:48.858 -07 000000431 INF: FPGA: Recv ZPIEZORD 32830
17-03-17 18:16:48.868 -07 000000459 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:16:48.868 -07 000000459 INF: Z Motor: Piezo is near 50.1 V (nominally 0 to 100 V), expect near 58.6 V, since DAC is at 5.861 V. Piezo Error = -8.5 V.
17-03-17 18:16:48.868 -07 000000459 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.8 um, Read 10 ADC samples: Avg = 36661 (-175.0 uncal um), Error = 0.9 uncal um, Median = 36660 (-174.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 36655 (-174.9 uncal um), Max = 36667 (-175.0 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 18:16:48.868 -07 000000459 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36661, posNoise = 6, negNoise = 6
17-03-17 18:16:48.868 -07 000000459 INF: Z Motor: After move to -0.175843, error = 0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:16:48.868 -07 000000459 INF: Z Motor: Settle wait time = 2010 ms, measure time = 106 ms (allowed 150 ms), total time = 2116 ms
17-03-17 18:16:48.868 -07 000000459 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-17 18:16:48.918 -07 000000459 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2801 ms
17-03-17 18:16:48.918 -07 000000459 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:16:48.918 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:16:48.918 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:16:48.918 -07 000000429 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:16:48.918 -07 000000482 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:16:48.918 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:16:48.918 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:16:48.918 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 18:16:48.918 -07 000000482 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:16:48.928 -07 000000482 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 18:16:48.928 -07 000000482 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:16:48.938 -07 000000482 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-17 18:16:48.938 -07 000000482 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 18:16:48.938 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:16:48.988 -07 000000627 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:16:49.188 -07 000000627 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:16:49.188 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:16:49.188 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:16:49.188 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 608668944, 0x0, 559484976) start.
17-03-17 18:16:49.218 -07 000000569 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:16:49.228 -07 000000627 INF: FPGA: Recv CAMSNAP
17-03-17 18:16:49.228 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 280 ms to get response, and 284 ms overall
17-03-17 18:16:49.308 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 608668944, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 18:16:49.308 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:16:49.318 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 18:16:49.318 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms.
17-03-17 18:16:49.328 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:16:49.328 -07 000000627 INF: Autofocus start
17-03-17 18:16:49.328 -07 000000627 INF: MeasureProfile start
17-03-17 18:16:49.328 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:16:49.338 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:16:49.338 -07 000000431 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:16:49.338 -07 000000627 INF: MeasureProfile done
17-03-17 18:16:49.338 -07 000000627 INF: X=32  Z correction [um]=0.09220707
17-03-17 18:16:49.338 -07 000000627 INF: Autofocus finished
17-03-17 18:16:49.538 -07 000000448 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:16:49.538 -07 000000431 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:16:49.538 -07 000000610 INF: ------------ Scan Snapping tile 9 at Y-position 66.53955078125, Z-position -0.175841393340233. ----------
17-03-17 18:16:49.538 -07 000000610 INF: Cycle	11	Tile	9	Exposure Settings		A	392	G	188	T	188	C	392
17-03-17 18:16:49.548 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36946, sync = True, waitForSettling = True)
17-03-17 18:16:49.548 -07 000000610 INF: Z Motor: Moving to -0.169128 mm, started at -0.175841 mm, distance = 6.71 um
17-03-17 18:16:49.548 -07 000000610 INF: FPGA: Xmit ZDACW 36946\n [Z Motor]
17-03-17 18:16:49.548 -07 000000502 INF: FPGA: Recv ZDACW
17-03-17 18:16:49.558 -07 000000610 INF: FPGA: 'ZDACW 36946' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:16:49.558 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:16:49.558 -07 000000569 INF: FPGA: Recv ZDACR 36946
17-03-17 18:16:49.568 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:16:49.568 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:16:49.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:16:49.718 -07 000000569 INF: FPGA: Recv ZSGSRD 35619
17-03-17 18:16:49.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:16:49.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:16:49.728 -07 000000502 INF: FPGA: Recv ZSGSRD 35625
17-03-17 18:16:49.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:16:49.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:16:49.738 -07 000000569 INF: FPGA: Recv ZSGSRD 35618
17-03-17 18:16:49.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:16:49.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:16:49.748 -07 000000569 INF: FPGA: Recv ZSGSRD 35618
17-03-17 18:16:49.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:16:49.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:16:49.758 -07 000000569 INF: FPGA: Recv ZSGSRD 35617
17-03-17 18:16:49.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:16:49.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:16:49.768 -07 000000482 INF: FPGA: Recv ZSGSRD 35617
17-03-17 18:16:49.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:16:49.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:16:49.778 -07 000000482 INF: FPGA: Recv ZSGSRD 35623
17-03-17 18:16:49.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:16:49.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:16:49.788 -07 000000448 INF: FPGA: Recv ZSGSRD 35615
17-03-17 18:16:49.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:16:49.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:16:49.798 -07 000000448 INF: FPGA: Recv ZSGSRD 35617
17-03-17 18:16:49.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:16:49.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:16:49.808 -07 000000448 INF: FPGA: Recv ZSGSRD 35618
17-03-17 18:16:49.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:16:49.818 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:16:49.818 -07 000000448 INF: FPGA: Recv ZPIEZORD 31402
17-03-17 18:16:49.828 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:16:49.828 -07 000000610 INF: Z Motor: Piezo is near 47.1 V (nominally 0 to 100 V), expect near 56.4 V, since DAC is at 5.638 V. Piezo Error = -9.3 V.
17-03-17 18:16:49.828 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.1 um, Read 10 ADC samples: Avg = 35619 (-168.3 uncal um), Error = 0.9 uncal um, Median = 35618 (-168.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35615 (-168.2 uncal um), Max = 35625 (-168.3 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 18:16:49.828 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35619, posNoise = 6, negNoise = 4
17-03-17 18:16:49.828 -07 000000610 INF: Z Motor: After move to -0.169128, error = -0.000019, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:16:49.828 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 18:16:49.828 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:16:49.828 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:16:49.828 -07 000000482 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:16:49.828 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:16:49.828 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:16:49.828 -07 000000448 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:16:49.828 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:16:49.828 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:16:49.828 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:16:49.828 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:16:49.828 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:16:49.828 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:16:49.838 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 18:16:49.838 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:16:49.838 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-17 18:16:49.838 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:16:49.848 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 18:16:49.848 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 18:16:49.848 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 18:16:49.848 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 18:16:49.858 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 392 392 188 188 37123 150\n [Camera]
17-03-17 18:16:50.058 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning red on 194
17-03-17 18:16:50.448 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 584
17-03-17 18:16:50.448 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 584
17-03-17 18:16:50.448 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:16:50.448 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 584
17-03-17 18:16:50.448 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 584
17-03-17 18:16:50.458 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:16:50.458 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 1393576040, 0x0, 391868352) start.
17-03-17 18:16:50.458 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:16:50.458 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:16:50.458 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 18:16:50.638 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37123 777
17-03-17 18:16:50.788 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP turning grn on 927
17-03-17 18:16:50.858 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 1393576040, 0x0, 391868352) end. Duration was 397 ms.
17-03-17 18:16:50.858 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 18:16:50.858 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:16:50.858 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:16:50.858 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 412 ms.
17-03-17 18:16:50.858 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 401 ms.
17-03-17 18:16:50.858 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-17 18:16:50.858 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:16:50.858 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:16:50.868 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-17 18:16:50.888 -07 000000429 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 11, FrontChillerTemperature: 4.001704,
17-03-17 18:16:50.978 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1115
17-03-17 18:16:50.978 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1115
17-03-17 18:16:50.978 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:16:50.978 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1115
17-03-17 18:16:50.978 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1115
17-03-17 18:16:50.978 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:16:50.978 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:16:50.978 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 2485095640, 0x0, 391868352) start.
17-03-17 18:16:50.978 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:16:50.978 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 1055068208, 0x0, 418435064) start.
17-03-17 18:16:51.168 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP 1308
17-03-17 18:16:51.168 -07 000000626 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:16:51.168 -07 000000610 INF: FPGA: 'CAMDBLSNAP 392 392 188 188 37123 150' command took 2 ms to send, 1305 ms to get response, and 1314 ms overall
17-03-17 18:16:51.168 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 18:16:51.168 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 10 at Y-position 66.53955078125, Z-Position -0.169147364288518. ------
17-03-17 18:16:51.298 -07 000000448 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:16:51.298 -07 000000459 INF: Y Motor: MoveYZ optimized starting. Moving Y to 67.3826 mm, moving Z to -0.17598 mm
17-03-17 18:16:51.298 -07 000000459 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:16:51.298 -07 000000429 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:16:51.298 -07 000000415 INF: Z Motor: Entering MoveAbsStepped (DAC = 38442, sync = True, waitForSettling = False)
17-03-17 18:16:51.298 -07 000000415 INF: Z Motor: Moving to -0.175976 mm, started at -0.169147 mm, distance = -6.83 um
17-03-17 18:16:51.298 -07 000000626 INF: Y Motor: Entering MoveAbsStepped (target = 107812 steps, sync = True, waitForSettling = True)
17-03-17 18:16:51.298 -07 000000626 INF: Y Motor: Moving to 67.3826 mm, started at 66.5396 mm, delta = 0.8431 mm
17-03-17 18:16:51.308 -07 000000448 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:16:51.308 -07 000000415 INF: FPGA: Xmit ZDACW 38442\n [Z Motor]
17-03-17 18:16:51.308 -07 000000512 INF: FPGA: Recv ZDACW
17-03-17 18:16:51.318 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:16:51.318 -07 000000415 INF: FPGA: 'ZDACW 38442' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-17 18:16:51.328 -07 000000448 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:16:51.338 -07 000000415 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:16:51.368 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 1055068208, 0x0, 418435064) end. Duration was 389 ms.
17-03-17 18:16:51.368 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 18:16:51.368 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:16:51.368 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 2485095640, 0x0, 391868352) end. Duration was 391 ms.
17-03-17 18:16:51.368 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-17 18:16:51.368 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:16:51.378 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:16:51.378 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:16:51.378 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 18:16:51.378 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-17 18:16:52.248 -07 000000482 INF: FPGA: Recv YRDPOS 136274
17-03-17 18:16:52.248 -07 000000482 INF: FPGA: Recv ZDACR 38442
17-03-17 18:16:52.248 -07 000000482 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:16:52.248 -07 000000482 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:16:52.248 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 920 ms to get response, and 943 ms overall
17-03-17 18:16:52.248 -07 000000626 INF: Y Motor: Encoder = 136274 = motor step 106464.1 = 66.5400 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:16:52.248 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 10. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=93, R2=102, Total=195. Warn if over 250 bubbles per interval.
17-03-17 18:16:52.248 -07 000000415 INF: FPGA: 'ZDACR' command took 0 ms to send, 902 ms to get response, and 931 ms overall
17-03-17 18:16:52.248 -07 000000415 INF: Z Motor: MoveAbsStepped took 946 ms (did NOT wait for settling yet))
17-03-17 18:16:52.248 -07 000000448 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 913 ms to get response, and 943 ms overall
17-03-17 18:16:52.258 -07 000000626 INF: Y Motor: Last commanded position = 66.5526 mm (106484.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:16:52.258 -07 000000626 INF: Y Motor: Moving 1348 steps-27
17-03-17 18:16:52.258 -07 000000626 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:16:52.628 -07 000000627 INF: FPGA: Recv YMVTILE
17-03-17 18:16:52.628 -07 000000626 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 369 ms to get response, and 378 ms overall
17-03-17 18:16:52.678 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:16:52.678 -07 000000569 INF: FPGA: Recv YRDPOS 137979
17-03-17 18:16:52.688 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:16:52.688 -07 000000626 INF: Y Motor: Encoder = 137979 = motor step 107796.1 = 67.3726 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:16:52.688 -07 000000626 INF: Y Motor: Position error before settling (table move) = -21 encoder counts (-0.010 mm)
17-03-17 18:16:52.688 -07 000000626 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 378 ms, distance = 0.843 mm, average velocity = 2.230 mm/sec
17-03-17 18:16:53.638 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:16:53.638 -07 000000415 INF: FPGA: Recv YRDPOS 137979
17-03-17 18:16:53.648 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:16:53.648 -07 000000626 INF: Y Motor: Encoder = 137979 = motor step 107796.1 = 67.3726 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:16:53.668 -07 000000626 INF: Y Motor: After move to 67.382607, error = -0.010048, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:16:53.668 -07 000000626 INF: Y Motor: Position error after settling (table move) = -21 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:16:53.668 -07 000000626 INF: Y Motor: Moved to 67.3726 after 2365 ms (table move)
17-03-17 18:16:53.668 -07 000000459 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175976 mm (DAC = 38442)
17-03-17 18:16:53.668 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:16:53.668 -07 000000626 INF: FPGA: Recv ZSGSRD 36684
17-03-17 18:16:53.678 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:16:53.678 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:16:53.678 -07 000000626 INF: FPGA: Recv ZSGSRD 36685
17-03-17 18:16:53.688 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:16:53.688 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:16:53.688 -07 000000431 INF: FPGA: Recv ZSGSRD 36691
17-03-17 18:16:53.698 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:16:53.698 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:16:53.698 -07 000000626 INF: FPGA: Recv ZSGSRD 36689
17-03-17 18:16:53.708 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:16:53.708 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:16:53.708 -07 000000626 INF: FPGA: Recv ZSGSRD 36680
17-03-17 18:16:53.718 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:16:53.718 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:16:53.718 -07 000000626 INF: FPGA: Recv ZSGSRD 36675
17-03-17 18:16:53.728 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:16:53.728 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:16:53.728 -07 000000626 INF: FPGA: Recv ZSGSRD 36676
17-03-17 18:16:53.738 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:16:53.738 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:16:53.738 -07 000000424 INF: FPGA: Recv ZSGSRD 36680
17-03-17 18:16:53.748 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:16:53.748 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:16:53.748 -07 000000415 INF: FPGA: Recv ZSGSRD 36688
17-03-17 18:16:53.758 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:16:53.758 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:16:53.758 -07 000000482 INF: FPGA: Recv ZSGSRD 36683
17-03-17 18:16:53.768 -07 000000459 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:16:53.768 -07 000000459 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:16:53.768 -07 000000482 INF: FPGA: Recv ZPIEZORD 32889
17-03-17 18:16:53.778 -07 000000459 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:16:53.778 -07 000000459 INF: Z Motor: Piezo is near 50.3 V (nominally 0 to 100 V), expect near 58.7 V, since DAC is at 5.866 V. Piezo Error = -8.4 V.
17-03-17 18:16:53.778 -07 000000459 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.0 um, Read 10 ADC samples: Avg = 36683 (-175.1 uncal um), Error = 0.9 uncal um, Median = 36684 (-175.1 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 36675 (-175.0 uncal um), Max = 36691 (-175.1 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 18:16:53.778 -07 000000459 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36683, posNoise = 8, negNoise = 8
17-03-17 18:16:53.778 -07 000000459 INF: Z Motor: After move to -0.175976, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:16:53.778 -07 000000459 INF: Z Motor: Settle wait time = 2368 ms, measure time = 106 ms (allowed 150 ms), total time = 2474 ms
17-03-17 18:16:53.778 -07 000000459 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-17 18:16:53.828 -07 000000459 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2526 ms
17-03-17 18:16:53.828 -07 000000459 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:16:53.828 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:16:53.828 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:16:53.828 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:16:53.828 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:16:53.828 -07 000000502 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:16:53.828 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:16:53.828 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 18:16:53.828 -07 000000502 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:16:53.838 -07 000000502 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 18:16:53.838 -07 000000502 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:16:53.838 -07 000000502 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 18:16:53.838 -07 000000502 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 18:16:53.848 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:16:53.888 -07 000000448 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:16:54.088 -07 000000424 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:16:54.088 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:16:54.088 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:16:54.088 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-17 18:16:54.128 -07 000000431 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:16:54.128 -07 000000627 INF: FPGA: Recv CAMSNAP
17-03-17 18:16:54.128 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 277 ms to get response, and 284 ms overall
17-03-17 18:16:54.208 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 117 ms.
17-03-17 18:16:54.208 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:16:54.208 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 18:16:54.208 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 120 ms.
17-03-17 18:16:54.228 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:16:54.228 -07 000000415 INF: Autofocus start
17-03-17 18:16:54.228 -07 000000415 INF: MeasureProfile start
17-03-17 18:16:54.228 -07 000000459 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:16:54.238 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:16:54.238 -07 000000502 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:16:54.238 -07 000000415 INF: MeasureProfile done
17-03-17 18:16:54.238 -07 000000415 INF: X=-16  Z correction [um]=-0.1496812
17-03-17 18:16:54.238 -07 000000415 INF: Autofocus finished
17-03-17 18:16:54.438 -07 000000459 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:16:54.438 -07 000000502 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 202 ms overall
17-03-17 18:16:54.438 -07 000000610 INF: ------------ Scan Snapping tile 10 at Y-position 67.37255859375, Z-position -0.175982726007352. ----------
17-03-17 18:16:54.438 -07 000000610 INF: Cycle	11	Tile	10	Exposure Settings		A	392	G	188	T	188	C	392
17-03-17 18:16:54.448 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36922, sync = True, waitForSettling = True)
17-03-17 18:16:54.448 -07 000000610 INF: Z Motor: Moving to -0.169018 mm, started at -0.175983 mm, distance = 6.96 um
17-03-17 18:16:54.448 -07 000000610 INF: FPGA: Xmit ZDACW 36922\n [Z Motor]
17-03-17 18:16:54.448 -07 000000512 INF: FPGA: Recv ZDACW
17-03-17 18:16:54.458 -07 000000610 INF: FPGA: 'ZDACW 36922' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:16:54.458 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:16:54.458 -07 000000618 INF: FPGA: Recv ZDACR 36922
17-03-17 18:16:54.468 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:16:54.468 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:16:54.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:16:54.618 -07 000000502 INF: FPGA: Recv ZSGSRD 35597
17-03-17 18:16:54.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:16:54.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:16:54.628 -07 000000431 INF: FPGA: Recv ZSGSRD 35603
17-03-17 18:16:54.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:16:54.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:16:54.638 -07 000000424 INF: FPGA: Recv ZSGSRD 35604
17-03-17 18:16:54.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:16:54.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:16:54.648 -07 000000431 INF: FPGA: Recv ZSGSRD 35592
17-03-17 18:16:54.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:16:54.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:16:54.658 -07 000000424 INF: FPGA: Recv ZSGSRD 35602
17-03-17 18:16:54.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:16:54.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:16:54.668 -07 000000431 INF: FPGA: Recv ZSGSRD 35599
17-03-17 18:16:54.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:16:54.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:16:54.678 -07 000000424 INF: FPGA: Recv ZSGSRD 35602
17-03-17 18:16:54.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:16:54.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:16:54.688 -07 000000626 INF: FPGA: Recv ZSGSRD 35601
17-03-17 18:16:54.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:16:54.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:16:54.698 -07 000000431 INF: FPGA: Recv ZSGSRD 35597
17-03-17 18:16:54.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:16:54.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:16:54.708 -07 000000424 INF: FPGA: Recv ZSGSRD 35604
17-03-17 18:16:54.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:16:54.718 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:16:54.718 -07 000000502 INF: FPGA: Recv ZPIEZORD 31418
17-03-17 18:16:54.728 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:16:54.728 -07 000000610 INF: Z Motor: Piezo is near 47.1 V (nominally 0 to 100 V), expect near 56.3 V, since DAC is at 5.634 V. Piezo Error = -9.2 V.
17-03-17 18:16:54.728 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.0 um, Read 10 ADC samples: Avg = 35600 (-168.2 uncal um), Error = 0.9 uncal um, Median = 35602 (-168.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35592 (-168.1 uncal um), Max = 35604 (-168.2 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 18:16:54.728 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35600, posNoise = 4, negNoise = 8
17-03-17 18:16:54.728 -07 000000610 INF: Z Motor: After move to -0.169018, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:16:54.728 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 18:16:54.728 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:16:54.728 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:16:54.728 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:16:54.728 -07 000000415 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:16:54.728 -07 000000482 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:16:54.728 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:16:54.728 -07 000000459 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:16:54.728 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:16:54.728 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:16:54.728 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:16:54.728 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:16:54.728 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:16:54.728 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 18:16:54.738 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:16:54.738 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 18:16:54.738 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:16:54.748 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 18:16:54.748 -07 000000482 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 18:16:54.748 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 18:16:54.748 -07 000000459 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 18:16:54.748 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 392 392 188 188 37099 150\n [Camera]
17-03-17 18:16:54.948 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:16:55.338 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 584
17-03-17 18:16:55.338 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 584
17-03-17 18:16:55.338 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:16:55.348 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 584
17-03-17 18:16:55.348 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 584
17-03-17 18:16:55.348 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:16:55.348 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:16:55.348 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-17 18:16:55.348 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:16:55.348 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 18:16:55.538 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37099 777
17-03-17 18:16:55.688 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP turning grn on 927
17-03-17 18:16:55.718 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 372 ms.
17-03-17 18:16:55.718 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 373 ms.
17-03-17 18:16:55.718 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:16:55.718 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 370 ms.
17-03-17 18:16:55.718 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 371 ms.
17-03-17 18:16:55.718 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:16:55.728 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:16:55.728 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 18:16:55.728 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:16:55.738 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 18:16:55.868 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1115
17-03-17 18:16:55.868 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1115
17-03-17 18:16:55.878 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:16:55.878 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:16:55.878 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 18:16:55.878 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1115
17-03-17 18:16:55.878 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1115
17-03-17 18:16:55.878 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:16:55.878 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:16:55.878 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 1445873368, 0x0, 418435064) start.
17-03-17 18:16:56.068 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP 1308
17-03-17 18:16:56.068 -07 000000512 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:16:56.068 -07 000000610 INF: FPGA: 'CAMDBLSNAP 392 392 188 188 37099 150' command took 2 ms to send, 1311 ms to get response, and 1318 ms overall
17-03-17 18:16:56.068 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 18:16:56.068 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 11 at Y-position 67.37255859375, Z-Position -0.169025304257825. ------
17-03-17 18:16:56.068 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:16:56.068 -07 000000482 INF: Y Motor: MoveYZ optimized starting. Moving Y to 68.2126 mm, moving Z to -0.17496 mm
17-03-17 18:16:56.068 -07 000000482 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:16:56.078 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:16:56.078 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 18:16:56.078 -07 000000512 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:16:56.078 -07 000000459 INF: Z Motor: Entering MoveAbsStepped (DAC = 38220, sync = True, waitForSettling = False)
17-03-17 18:16:56.078 -07 000000459 INF: Z Motor: Moving to -0.174960 mm, started at -0.169025 mm, distance = -5.93 um
17-03-17 18:16:56.078 -07 000000415 INF: Y Motor: Entering MoveAbsStepped (target = 109140 steps, sync = True, waitForSettling = True)
17-03-17 18:16:56.078 -07 000000415 INF: Y Motor: Moving to 68.2126 mm, started at 67.3726 mm, delta = 0.8400 mm
17-03-17 18:16:56.088 -07 000000415 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:16:56.088 -07 000000431 INF: FPGA: Recv YRDPOS 137979
17-03-17 18:16:56.098 -07 000000459 INF: FPGA: Xmit ZDACW 38220\n [Z Motor]
17-03-17 18:16:56.098 -07 000000415 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-17 18:16:56.098 -07 000000415 INF: Y Motor: Encoder = 137979 = motor step 107796.1 = 67.3726 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:16:56.098 -07 000000415 INF: Y Motor: Last commanded position = 67.3826 mm (107812.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:16:56.098 -07 000000415 INF: Y Motor: Moving 1344 steps-21
17-03-17 18:16:56.098 -07 000000448 INF: FPGA: Recv ZDACW
17-03-17 18:16:56.108 -07 000000459 INF: FPGA: 'ZDACW 38220' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-17 18:16:56.108 -07 000000459 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:16:56.108 -07 000000448 INF: FPGA: Recv ZDACR 38220
17-03-17 18:16:56.118 -07 000000415 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:16:56.118 -07 000000459 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:16:56.118 -07 000000459 INF: Z Motor: MoveAbsStepped took 38 ms (did NOT wait for settling yet))
17-03-17 18:16:56.248 -07 000000502 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 11, FrontChillerTemperature: 3.99219,
17-03-17 18:16:56.258 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 1445873368, 0x0, 418435064) end. Duration was 380 ms.
17-03-17 18:16:56.258 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 381 ms.
17-03-17 18:16:56.258 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:16:56.258 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 384 ms.
17-03-17 18:16:56.258 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 18:16:56.258 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:16:56.268 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 18:16:56.268 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 18:16:56.268 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-17 18:16:56.278 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 18:16:56.278 -07 000000618 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:16:56.278 -07 000000512 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 194 ms to get response, and 202 ms overall
17-03-17 18:16:56.498 -07 000000512 INF: FPGA: Recv YMVTILE
17-03-17 18:16:56.498 -07 000000415 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 371 ms to get response, and 400 ms overall
17-03-17 18:16:56.528 -07 000000415 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:16:56.528 -07 000000618 INF: FPGA: Recv YRDPOS 139685
17-03-17 18:16:56.538 -07 000000415 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:16:56.538 -07 000000415 INF: Y Motor: Encoder = 139685 = motor step 109128.9 = 68.2056 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:16:56.538 -07 000000415 INF: Y Motor: Position error before settling (table move) = -14 encoder counts (-0.007 mm)
17-03-17 18:16:56.538 -07 000000415 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 401 ms, distance = 0.840 mm, average velocity = 2.095 mm/sec
17-03-17 18:16:56.578 -07 000000627 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:16:56.578 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 10. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=93, R2=102, Total=195. Warn if over 250 bubbles per interval.
17-03-17 18:16:57.488 -07 000000415 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:16:57.488 -07 000000618 INF: FPGA: Recv YRDPOS 139686
17-03-17 18:16:57.498 -07 000000415 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:16:57.498 -07 000000415 INF: Y Motor: Encoder = 139686 = motor step 109129.7 = 68.2061 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:16:57.518 -07 000000415 INF: Y Motor: After move to 68.212608, error = -0.006554, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:16:57.518 -07 000000415 INF: Y Motor: Position error after settling (table move) = -13 encoder counts (-0.006 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 18:16:57.518 -07 000000415 INF: Y Motor: Moved to 68.2061 after 1437 ms (table move)
17-03-17 18:16:57.518 -07 000000482 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174960 mm (DAC = 38220)
17-03-17 18:16:57.518 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:16:57.518 -07 000000448 INF: FPGA: Recv ZSGSRD 36520
17-03-17 18:16:57.528 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:16:57.528 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:16:57.528 -07 000000626 INF: FPGA: Recv ZSGSRD 36520
17-03-17 18:16:57.538 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:16:57.538 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:16:57.538 -07 000000502 INF: FPGA: Recv ZSGSRD 36523
17-03-17 18:16:57.548 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:16:57.548 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:16:57.548 -07 000000627 INF: FPGA: Recv ZSGSRD 36520
17-03-17 18:16:57.558 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:16:57.558 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:16:57.558 -07 000000478 INF: FPGA: Recv ZSGSRD 36521
17-03-17 18:16:57.568 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:16:57.568 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:16:57.568 -07 000000433 INF: FPGA: Recv ZSGSRD 36521
17-03-17 18:16:57.578 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:16:57.578 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:16:57.578 -07 000000431 INF: FPGA: Recv ZSGSRD 36532
17-03-17 18:16:57.588 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:16:57.588 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:16:57.588 -07 000000459 INF: FPGA: Recv ZSGSRD 36533
17-03-17 18:16:57.598 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:16:57.598 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:16:57.598 -07 000000569 INF: FPGA: Recv ZSGSRD 36525
17-03-17 18:16:57.608 -07 000000482 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:16:57.618 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:16:57.618 -07 000000502 INF: FPGA: Recv ZSGSRD 36532
17-03-17 18:16:57.628 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 18:16:57.648 -07 000000482 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:16:57.648 -07 000000424 INF: FPGA: Recv ZPIEZORD 32676
17-03-17 18:16:57.658 -07 000000482 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:16:57.658 -07 000000482 INF: Z Motor: Piezo is near 49.8 V (nominally 0 to 100 V), expect near 58.3 V, since DAC is at 5.832 V. Piezo Error = -8.5 V.
17-03-17 18:16:57.658 -07 000000482 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.0 um, Read 10 ADC samples: Avg = 36525 (-174.1 uncal um), Error = 0.9 uncal um, Median = 36522 (-174.1 uncal um), StdDev = 5 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 36520 (-174.0 uncal um), Max = 36533 (-174.1 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 18:16:57.658 -07 000000482 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36525, posNoise = 8, negNoise = 5
17-03-17 18:16:57.658 -07 000000482 INF: Z Motor: After move to -0.174960, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:16:57.658 -07 000000482 INF: Z Motor: Settle wait time = 1441 ms, measure time = 137 ms (allowed 150 ms), total time = 1578 ms
17-03-17 18:16:57.658 -07 000000482 INF: Z Motor: Waiting extra 13 ms after reading position to reach expected total of 150 ms
17-03-17 18:16:57.678 -07 000000482 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1601 ms
17-03-17 18:16:57.678 -07 000000482 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:16:57.678 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:16:57.678 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:16:57.678 -07 000000433 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:16:57.678 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:16:57.678 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:16:57.678 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:16:57.678 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 18:16:57.678 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:16:57.688 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:16:57.688 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:16:57.698 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 18:16:57.698 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 18:16:57.698 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:16:57.738 -07 000000424 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:16:57.938 -07 000000502 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:16:57.938 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:16:57.938 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:16:57.938 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 675221432, 0x0, 559484976) start.
17-03-17 18:16:57.978 -07 000000459 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:16:57.978 -07 000000448 INF: FPGA: Recv CAMSNAP
17-03-17 18:16:57.978 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 277 ms to get response, and 284 ms overall
17-03-17 18:16:58.058 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 675221432, 0x0, 559484976) end. Duration was 116 ms.
17-03-17 18:16:58.058 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:16:58.058 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 18:16:58.058 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-17 18:16:58.078 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:16:58.078 -07 000000627 INF: Autofocus start
17-03-17 18:16:58.078 -07 000000627 INF: MeasureProfile start
17-03-17 18:16:58.088 -07 000000433 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:16:58.088 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:16:58.088 -07 000000502 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:16:58.098 -07 000000627 INF: MeasureProfile done
17-03-17 18:16:58.098 -07 000000627 INF: X=112  Z correction [um]=0.5011052
17-03-17 18:16:58.098 -07 000000627 INF: Autofocus finished
17-03-17 18:16:58.288 -07 000000618 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:16:58.288 -07 000000502 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:16:58.288 -07 000000610 INF: ------------ Scan Snapping tile 11 at Y-position 68.2060546875, Z-position -0.174967700488954. ----------
17-03-17 18:16:58.298 -07 000000610 INF: Cycle	11	Tile	11	Exposure Settings		A	392	G	188	T	188	C	392
17-03-17 18:16:58.298 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36842, sync = True, waitForSettling = True)
17-03-17 18:16:58.298 -07 000000610 INF: Z Motor: Moving to -0.168652 mm, started at -0.174968 mm, distance = 6.32 um
17-03-17 18:16:58.298 -07 000000610 INF: FPGA: Xmit ZDACW 36842\n [Z Motor]
17-03-17 18:16:58.298 -07 000000459 INF: FPGA: Recv ZDACW
17-03-17 18:16:58.308 -07 000000610 INF: FPGA: 'ZDACW 36842' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:16:58.308 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:16:58.308 -07 000000569 INF: FPGA: Recv ZDACR 36842
17-03-17 18:16:58.318 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:16:58.318 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:16:58.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:16:58.468 -07 000000448 INF: FPGA: Recv ZSGSRD 35545
17-03-17 18:16:58.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:16:58.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:16:58.478 -07 000000433 INF: FPGA: Recv ZSGSRD 35545
17-03-17 18:16:58.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:16:58.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:16:58.488 -07 000000478 INF: FPGA: Recv ZSGSRD 35539
17-03-17 18:16:58.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:16:58.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:16:58.498 -07 000000459 INF: FPGA: Recv ZSGSRD 35542
17-03-17 18:16:58.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:16:58.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:16:58.508 -07 000000482 INF: FPGA: Recv ZSGSRD 35548
17-03-17 18:16:58.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:16:58.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:16:58.518 -07 000000626 INF: FPGA: Recv ZSGSRD 35547
17-03-17 18:16:58.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:16:58.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:16:58.528 -07 000000627 INF: FPGA: Recv ZSGSRD 35546
17-03-17 18:16:58.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:16:58.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:16:58.538 -07 000000459 INF: FPGA: Recv ZSGSRD 35547
17-03-17 18:16:58.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:16:58.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:16:58.548 -07 000000618 INF: FPGA: Recv ZSGSRD 35546
17-03-17 18:16:58.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:16:58.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:16:58.558 -07 000000569 INF: FPGA: Recv ZSGSRD 35541
17-03-17 18:16:58.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:16:58.568 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:16:58.568 -07 000000424 INF: FPGA: Recv ZPIEZORD 31366
17-03-17 18:16:58.578 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:16:58.578 -07 000000610 INF: Z Motor: Piezo is near 47.0 V (nominally 0 to 100 V), expect near 56.2 V, since DAC is at 5.622 V. Piezo Error = -9.2 V.
17-03-17 18:16:58.578 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.7 um, Read 10 ADC samples: Avg = 35545 (-167.8 uncal um), Error = 0.9 uncal um, Median = 35546 (-167.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35539 (-167.8 uncal um), Max = 35548 (-167.8 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 18:16:58.578 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35545, posNoise = 3, negNoise = 6
17-03-17 18:16:58.578 -07 000000610 INF: Z Motor: After move to -0.168652, error = -0.000020, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:16:58.578 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 18:16:58.578 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:16:58.578 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:16:58.578 -07 000000448 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:16:58.578 -07 000000433 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:16:58.578 -07 000000482 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:16:58.578 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:16:58.578 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:16:58.578 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:16:58.578 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 18:16:58.578 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:16:58.578 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:16:58.578 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:16:58.588 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 5 ms.
17-03-17 18:16:58.588 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:16:58.588 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 18:16:58.588 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:16:58.598 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 18:16:58.598 -07 000000433 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 17 ms.
17-03-17 18:16:58.598 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 18:16:58.598 -07 000000482 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 18 ms.
17-03-17 18:16:58.598 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 392 392 188 188 37018 150\n [Camera]
17-03-17 18:16:58.798 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:16:59.188 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 584
17-03-17 18:16:59.188 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 584
17-03-17 18:16:59.188 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:16:59.188 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:16:59.188 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 1481295632, 0x0, 391868352) start.
17-03-17 18:16:59.188 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 584
17-03-17 18:16:59.188 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 584
17-03-17 18:16:59.198 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:16:59.198 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:16:59.198 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1090490472, 0x0, 418435064) start.
17-03-17 18:16:59.378 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37018 777
17-03-17 18:16:59.528 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP turning grn on 927
17-03-17 18:16:59.568 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 1481295632, 0x0, 391868352) end. Duration was 376 ms.
17-03-17 18:16:59.568 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 18:16:59.568 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:16:59.568 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1090490472, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 18:16:59.568 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 18:16:59.568 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:16:59.578 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:16:59.578 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 18:16:59.578 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:16:59.578 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 18:16:59.718 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1118
17-03-17 18:16:59.728 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1118
17-03-17 18:16:59.728 -07 000000433 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:16:59.728 -07 000000433 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:16:59.728 -07 000000433 INF: Camera: sBCa_ReadImage(785074288, 1125912736, 0x0, 391868352) start.
17-03-17 18:16:59.728 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1118
17-03-17 18:16:59.728 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1118
17-03-17 18:16:59.728 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:16:59.728 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:16:59.728 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 18:16:59.908 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP 1307
17-03-17 18:16:59.908 -07 000000627 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:16:59.908 -07 000000610 INF: FPGA: 'CAMDBLSNAP 392 392 188 188 37018 150' command took 2 ms to send, 1309 ms to get response, and 1314 ms overall
17-03-17 18:16:59.918 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 18:16:59.918 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 12 at Y-position 68.2060546875, Z-Position -0.168671972590028. ------
17-03-17 18:16:59.918 -07 000000618 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:16:59.918 -07 000000512 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.0426 mm, moving Z to -0.17515 mm
17-03-17 18:16:59.918 -07 000000512 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:16:59.918 -07 000000627 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:16:59.918 -07 000000431 INF: Y Motor: Entering MoveAbsStepped (target = 110468 steps, sync = True, waitForSettling = True)
17-03-17 18:16:59.918 -07 000000431 INF: Y Motor: Moving to 69.0426 mm, started at 68.2061 mm, delta = 0.8366 mm
17-03-17 18:16:59.928 -07 000000618 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:16:59.928 -07 000000478 INF: Z Motor: Entering MoveAbsStepped (DAC = 38261, sync = True, waitForSettling = False)
17-03-17 18:16:59.928 -07 000000478 INF: Z Motor: Moving to -0.175148 mm, started at -0.168672 mm, distance = -6.48 um
17-03-17 18:16:59.928 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:16:59.928 -07 000000482 INF: FPGA: Recv YRDPOS 139686
17-03-17 18:16:59.938 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:16:59.938 -07 000000431 INF: Y Motor: Encoder = 139686 = motor step 109129.7 = 68.2061 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:16:59.938 -07 000000431 INF: Y Motor: Last commanded position = 68.2126 mm (109140.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:16:59.938 -07 000000431 INF: Y Motor: Moving 1338 steps-14
17-03-17 18:16:59.938 -07 000000478 INF: FPGA: Xmit ZDACW 38261\n [Z Motor]
17-03-17 18:16:59.938 -07 000000627 INF: FPGA: Recv ZDACW
17-03-17 18:16:59.948 -07 000000618 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:16:59.948 -07 000000478 INF: FPGA: 'ZDACW 38261' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 18:17:00.478 -07 000000431 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:17:00.478 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 379 ms.
17-03-17 18:17:00.478 -07 000000433 INF: Camera: sBCa_ReadImage(785074288, 1125912736, 0x0, 391868352) end. Duration was 387 ms.
17-03-17 18:17:00.478 -07 000000627 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:17:00.478 -07 000000618 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 408 ms to get response, and 550 ms overall
17-03-17 18:17:00.478 -07 000000433 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 750 ms.
17-03-17 18:17:00.478 -07 000000433 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:17:00.478 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 744 ms.
17-03-17 18:17:00.478 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:17:00.478 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:17:00.488 -07 000000478 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:17:00.488 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 9 ms.
17-03-17 18:17:00.488 -07 000000433 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 760 ms.
17-03-17 18:17:00.488 -07 000000424 INF: FPGA: Recv ZDACR 38261
17-03-17 18:17:00.488 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 758 ms.
17-03-17 18:17:00.498 -07 000000478 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-17 18:17:00.498 -07 000000478 INF: Z Motor: MoveAbsStepped took 569 ms (did NOT wait for settling yet))
17-03-17 18:17:00.858 -07 000000478 INF: FPGA: Recv YMVTILE
17-03-17 18:17:00.858 -07 000000431 INF: FPGA: 'YMVTILE 1327' command took 407 ms to send, 372 ms to get response, and 922 ms overall
17-03-17 18:17:00.888 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:17:00.898 -07 000000433 INF: FPGA: Recv YRDPOS 141369
17-03-17 18:17:00.898 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 18:17:00.898 -07 000000431 INF: Y Motor: Encoder = 141369 = motor step 110444.5 = 69.0278 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:17:00.898 -07 000000431 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-17 18:17:00.898 -07 000000431 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 922 ms, distance = 0.837 mm, average velocity = 0.907 mm/sec
17-03-17 18:17:01.578 -07 000000478 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:17:01.578 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 10. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=93, R2=102, Total=195. Warn if over 250 bubbles per interval.
17-03-17 18:17:01.608 -07 000000627 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 11, FrontChillerTemperature: 4.018051,
17-03-17 18:17:01.848 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:17:01.848 -07 000000448 INF: FPGA: Recv YRDPOS 141369
17-03-17 18:17:01.858 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:17:01.858 -07 000000431 INF: Y Motor: Encoder = 141369 = motor step 110444.5 = 69.0278 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:17:01.878 -07 000000431 INF: Y Motor: After move to 69.042610, error = -0.014778, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:17:01.878 -07 000000431 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:17:01.878 -07 000000431 INF: Y Motor: Moved to 69.0278 after 1951 ms (table move)
17-03-17 18:17:01.878 -07 000000512 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175148 mm (DAC = 38261)
17-03-17 18:17:01.878 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:17:01.878 -07 000000627 INF: FPGA: Recv ZSGSRD 36556
17-03-17 18:17:01.888 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:17:01.888 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:17:01.888 -07 000000459 INF: FPGA: Recv ZSGSRD 36553
17-03-17 18:17:01.898 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:17:01.898 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:17:01.898 -07 000000459 INF: FPGA: Recv ZSGSRD 36559
17-03-17 18:17:01.908 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:17:01.908 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:17:01.908 -07 000000459 INF: FPGA: Recv ZSGSRD 36558
17-03-17 18:17:01.918 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:17:01.918 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:17:01.918 -07 000000482 INF: FPGA: Recv ZSGSRD 36550
17-03-17 18:17:01.928 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:17:01.928 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:17:01.928 -07 000000459 INF: FPGA: Recv ZSGSRD 36556
17-03-17 18:17:01.938 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:17:01.938 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:17:01.938 -07 000000482 INF: FPGA: Recv ZSGSRD 36557
17-03-17 18:17:01.948 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:17:01.948 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:17:01.948 -07 000000431 INF: FPGA: Recv ZSGSRD 36555
17-03-17 18:17:01.958 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:17:01.958 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:17:01.958 -07 000000482 INF: FPGA: Recv ZSGSRD 36550
17-03-17 18:17:01.968 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:17:01.968 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:17:01.968 -07 000000431 INF: FPGA: Recv ZSGSRD 36552
17-03-17 18:17:01.978 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:17:01.978 -07 000000512 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:17:01.978 -07 000000459 INF: FPGA: Recv ZPIEZORD 32737
17-03-17 18:17:01.988 -07 000000512 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:17:01.988 -07 000000512 INF: Z Motor: Piezo is near 49.9 V (nominally 0 to 100 V), expect near 58.4 V, since DAC is at 5.838 V. Piezo Error = -8.4 V.
17-03-17 18:17:01.988 -07 000000512 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.1 um, Read 10 ADC samples: Avg = 36555 (-174.3 uncal um), Error = 0.9 uncal um, Median = 36556 (-174.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 36550 (-174.2 uncal um), Max = 36559 (-174.3 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 18:17:01.988 -07 000000512 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36555, posNoise = 4, negNoise = 5
17-03-17 18:17:01.988 -07 000000512 INF: Z Motor: After move to -0.175148, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:17:01.988 -07 000000512 INF: Z Motor: Settle wait time = 1955 ms, measure time = 105 ms (allowed 150 ms), total time = 2060 ms
17-03-17 18:17:01.988 -07 000000512 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 18:17:02.038 -07 000000512 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2114 ms
17-03-17 18:17:02.038 -07 000000512 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:17:02.038 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:17:02.038 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:17:02.038 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:17:02.038 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:17:02.038 -07 000000627 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:17:02.038 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:17:02.048 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 18:17:02.048 -07 000000627 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:17:02.048 -07 000000627 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:17:02.048 -07 000000627 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:17:02.058 -07 000000627 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 18:17:02.058 -07 000000627 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 18:17:02.058 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:17:02.098 -07 000000512 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:17:02.298 -07 000000459 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:17:02.298 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:17:02.298 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:17:02.298 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-17 18:17:02.338 -07 000000569 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:17:02.338 -07 000000627 INF: FPGA: Recv CAMSNAP
17-03-17 18:17:02.338 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 277 ms to get response, and 284 ms overall
17-03-17 18:17:02.418 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 18:17:02.418 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:17:02.418 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 18:17:02.418 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 18:17:02.738 -07 000000431 INF: Autofocus start
17-03-17 18:17:02.738 -07 000000431 INF: MeasureProfile start
17-03-17 18:17:02.738 -07 000000478 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:17:02.738 -07 000000448 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:17:02.748 -07 000000478 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:17:02.748 -07 000000478 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:17:02.748 -07 000000431 INF: MeasureProfile done
17-03-17 18:17:02.748 -07 000000431 INF: X=48  Z correction [um]=0.1739867
17-03-17 18:17:02.748 -07 000000431 INF: Autofocus finished
17-03-17 18:17:02.948 -07 000000618 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:17:02.948 -07 000000478 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:17:02.948 -07 000000610 INF: ------------ Scan Snapping tile 12 at Y-position 69.02783203125, Z-position -0.175160426853207. ----------
17-03-17 18:17:02.958 -07 000000610 INF: Cycle	11	Tile	12	Exposure Settings		A	392	G	188	T	188	C	392
17-03-17 18:17:02.958 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36811, sync = True, waitForSettling = True)
17-03-17 18:17:02.958 -07 000000610 INF: Z Motor: Moving to -0.168510 mm, started at -0.175160 mm, distance = 6.65 um
17-03-17 18:17:02.958 -07 000000610 INF: FPGA: Xmit ZDACW 36811\n [Z Motor]
17-03-17 18:17:02.958 -07 000000478 INF: FPGA: Recv ZDACW
17-03-17 18:17:02.968 -07 000000610 INF: FPGA: 'ZDACW 36811' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:17:02.968 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:17:02.968 -07 000000478 INF: FPGA: Recv ZDACR 36811
17-03-17 18:17:02.978 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:17:02.978 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:17:03.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:17:03.128 -07 000000627 INF: FPGA: Recv ZSGSRD 35518
17-03-17 18:17:03.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:17:03.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:17:03.138 -07 000000627 INF: FPGA: Recv ZSGSRD 35527
17-03-17 18:17:03.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:17:03.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:17:03.148 -07 000000627 INF: FPGA: Recv ZSGSRD 35524
17-03-17 18:17:03.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:17:03.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:17:03.158 -07 000000448 INF: FPGA: Recv ZSGSRD 35519
17-03-17 18:17:03.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:17:03.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:17:03.168 -07 000000448 INF: FPGA: Recv ZSGSRD 35515
17-03-17 18:17:03.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:17:03.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:17:03.178 -07 000000448 INF: FPGA: Recv ZSGSRD 35521
17-03-17 18:17:03.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:17:03.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:17:03.188 -07 000000569 INF: FPGA: Recv ZSGSRD 35527
17-03-17 18:17:03.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:17:03.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:17:03.198 -07 000000569 INF: FPGA: Recv ZSGSRD 35522
17-03-17 18:17:03.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:17:03.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:17:03.208 -07 000000569 INF: FPGA: Recv ZSGSRD 35519
17-03-17 18:17:03.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:17:03.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:17:03.218 -07 000000569 INF: FPGA: Recv ZSGSRD 35523
17-03-17 18:17:03.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:17:03.228 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:17:03.228 -07 000000459 INF: FPGA: Recv ZPIEZORD 31304
17-03-17 18:17:03.238 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:17:03.238 -07 000000610 INF: Z Motor: Piezo is near 46.9 V (nominally 0 to 100 V), expect near 56.2 V, since DAC is at 5.617 V. Piezo Error = -9.3 V.
17-03-17 18:17:03.238 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.5 um, Read 10 ADC samples: Avg = 35522 (-167.7 uncal um), Error = 0.9 uncal um, Median = 35522 (-167.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35515 (-167.6 uncal um), Max = 35527 (-167.7 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 18:17:03.238 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35522, posNoise = 5, negNoise = 7
17-03-17 18:17:03.238 -07 000000610 INF: Z Motor: After move to -0.168510, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:17:03.238 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 18:17:03.238 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:17:03.238 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:17:03.238 -07 000000627 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:17:03.238 -07 000000478 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:17:03.238 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:17:03.238 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:17:03.248 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:17:03.248 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:17:03.248 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:17:03.248 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:17:03.248 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:17:03.248 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:17:03.248 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 18:17:03.248 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:17:03.248 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 18:17:03.248 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:17:03.258 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 18:17:03.258 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 18:17:03.258 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 18:17:03.258 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 18:17:03.258 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 392 392 188 188 36988 150\n [Camera]
17-03-17 18:17:03.458 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:17:03.858 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 584
17-03-17 18:17:03.858 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 584
17-03-17 18:17:03.858 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:17:03.858 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:17:03.858 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-17 18:17:03.858 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 584
17-03-17 18:17:03.858 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 584
17-03-17 18:17:03.858 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:17:03.868 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:17:03.868 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 2485095640, 0x0, 418435064) start.
17-03-17 18:17:04.048 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36988 777
17-03-17 18:17:04.198 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP turning grn on 927
17-03-17 18:17:04.248 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 390 ms.
17-03-17 18:17:04.248 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-17 18:17:04.248 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:17:04.248 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:17:04.248 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-17 18:17:04.258 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 2485095640, 0x0, 418435064) end. Duration was 390 ms.
17-03-17 18:17:04.258 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 18:17:04.258 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:17:04.258 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-17 18:17:04.268 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 407 ms.
17-03-17 18:17:04.388 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1115
17-03-17 18:17:04.388 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1115
17-03-17 18:17:04.388 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:17:04.388 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1115
17-03-17 18:17:04.388 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1115
17-03-17 18:17:04.388 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:17:04.398 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:17:04.398 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 1055068208, 0x0, 391868352) start.
17-03-17 18:17:04.398 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:17:04.398 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 1090490472, 0x0, 418435064) start.
17-03-17 18:17:04.578 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP 1308
17-03-17 18:17:04.578 -07 000000459 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:17:04.578 -07 000000610 INF: FPGA: 'CAMDBLSNAP 392 392 188 188 36988 150' command took 2 ms to send, 1302 ms to get response, and 1315 ms overall
17-03-17 18:17:04.578 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 18:17:04.578 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 13 at Y-position 69.02783203125, Z-Position -0.168524215710768. ------
17-03-17 18:17:04.578 -07 000000618 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:17:04.578 -07 000000502 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.8726 mm, moving Z to -0.17487 mm
17-03-17 18:17:04.578 -07 000000502 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:17:04.698 -07 000000478 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:17:04.698 -07 000000618 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 114 ms overall
17-03-17 18:17:04.698 -07 000000618 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:17:04.698 -07 000000431 INF: Y Motor: Entering MoveAbsStepped (target = 111796 steps, sync = True, waitForSettling = True)
17-03-17 18:17:04.698 -07 000000431 INF: Y Motor: Moving to 69.8726 mm, started at 69.0278 mm, delta = 0.8448 mm
17-03-17 18:17:04.698 -07 000000512 INF: Z Motor: Entering MoveAbsStepped (DAC = 38201, sync = True, waitForSettling = False)
17-03-17 18:17:04.698 -07 000000512 INF: Z Motor: Moving to -0.174873 mm, started at -0.168524 mm, distance = -6.35 um
17-03-17 18:17:04.708 -07 000000512 INF: FPGA: Xmit ZDACW 38201\n [Z Motor]
17-03-17 18:17:04.708 -07 000000561 INF: FPGA: Recv ZDACW
17-03-17 18:17:04.718 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:17:04.718 -07 000000512 INF: FPGA: 'ZDACW 38201' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-17 18:17:04.718 -07 000000626 INF: FPGA: Recv YRDPOS 141370
17-03-17 18:17:04.728 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-17 18:17:04.728 -07 000000512 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:17:04.728 -07 000000431 INF: Y Motor: Encoder = 141370 = motor step 110445.3 = 69.0283 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:17:04.728 -07 000000415 INF: FPGA: Recv ZDACR 38201
17-03-17 18:17:04.728 -07 000000431 INF: Y Motor: Last commanded position = 69.0426 mm (110468.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:17:04.728 -07 000000431 INF: Y Motor: Moving 1351 steps-30
17-03-17 18:17:04.738 -07 000000512 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 18:17:04.738 -07 000000512 INF: Z Motor: MoveAbsStepped took 36 ms (did NOT wait for settling yet))
17-03-17 18:17:04.738 -07 000000431 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:17:04.788 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 1090490472, 0x0, 418435064) end. Duration was 391 ms.
17-03-17 18:17:04.788 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 18:17:04.788 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:17:04.788 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 1055068208, 0x0, 391868352) end. Duration was 393 ms.
17-03-17 18:17:04.788 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-17 18:17:04.788 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:17:04.798 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:17:04.798 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:17:04.798 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 410 ms.
17-03-17 18:17:04.798 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-17 18:17:04.898 -07 000000429 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:17:04.898 -07 000000618 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 195 ms to get response, and 202 ms overall
17-03-17 18:17:05.108 -07 000000512 INF: FPGA: Recv YMVTILE
17-03-17 18:17:05.108 -07 000000431 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 384 ms overall
17-03-17 18:17:05.148 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:17:05.148 -07 000000626 INF: FPGA: Recv YRDPOS 143081
17-03-17 18:17:05.158 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:17:05.158 -07 000000431 INF: Y Motor: Encoder = 143081 = motor step 111782.0 = 69.8638 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:17:05.158 -07 000000431 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-17 18:17:05.158 -07 000000431 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 385 ms, distance = 0.845 mm, average velocity = 2.194 mm/sec
17-03-17 18:17:06.108 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:17:06.108 -07 000000478 INF: FPGA: Recv YRDPOS 143081
17-03-17 18:17:06.118 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:17:06.118 -07 000000431 INF: Y Motor: Encoder = 143081 = motor step 111782.0 = 69.8638 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:17:06.138 -07 000000431 INF: Y Motor: After move to 69.872612, error = -0.008842, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:17:06.138 -07 000000431 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:17:06.138 -07 000000431 INF: Y Motor: Moved to 69.8638 after 1437 ms (table move)
17-03-17 18:17:06.138 -07 000000502 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174873 mm (DAC = 38201)
17-03-17 18:17:06.138 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:17:06.138 -07 000000512 INF: FPGA: Recv ZSGSRD 36516
17-03-17 18:17:06.148 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 18:17:06.148 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:17:06.148 -07 000000415 INF: FPGA: Recv ZSGSRD 36510
17-03-17 18:17:06.158 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:17:06.158 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:17:06.158 -07 000000415 INF: FPGA: Recv ZSGSRD 36502
17-03-17 18:17:06.168 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:17:06.168 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:17:06.168 -07 000000415 INF: FPGA: Recv ZSGSRD 36513
17-03-17 18:17:06.178 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:17:06.178 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:17:06.178 -07 000000415 INF: FPGA: Recv ZSGSRD 36519
17-03-17 18:17:06.188 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:17:06.188 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:17:06.188 -07 000000415 INF: FPGA: Recv ZSGSRD 36513
17-03-17 18:17:06.198 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:17:06.198 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:17:06.198 -07 000000415 INF: FPGA: Recv ZSGSRD 36516
17-03-17 18:17:06.208 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:17:06.208 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:17:06.208 -07 000000626 INF: FPGA: Recv ZSGSRD 36510
17-03-17 18:17:06.218 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:17:06.218 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:17:06.218 -07 000000561 INF: FPGA: Recv ZSGSRD 36507
17-03-17 18:17:06.228 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:17:06.228 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:17:06.228 -07 000000459 INF: FPGA: Recv ZSGSRD 36511
17-03-17 18:17:06.238 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:17:06.238 -07 000000502 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:17:06.238 -07 000000459 INF: FPGA: Recv ZPIEZORD 32649
17-03-17 18:17:06.248 -07 000000502 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:17:06.248 -07 000000502 INF: Z Motor: Piezo is near 49.7 V (nominally 0 to 100 V), expect near 58.3 V, since DAC is at 5.829 V. Piezo Error = -8.5 V.
17-03-17 18:17:06.248 -07 000000502 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.9 um, Read 10 ADC samples: Avg = 36512 (-174.0 uncal um), Error = 0.9 uncal um, Median = 36512 (-174.0 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 36502 (-173.9 uncal um), Max = 36519 (-174.0 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-17 18:17:06.248 -07 000000502 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36512, posNoise = 7, negNoise = 10
17-03-17 18:17:06.248 -07 000000502 INF: Z Motor: After move to -0.174873, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:17:06.248 -07 000000502 INF: Z Motor: Settle wait time = 1441 ms, measure time = 106 ms (allowed 150 ms), total time = 1547 ms
17-03-17 18:17:06.248 -07 000000502 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-17 18:17:06.298 -07 000000502 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1712 ms
17-03-17 18:17:06.298 -07 000000502 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:17:06.298 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:17:06.298 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:17:06.298 -07 000000433 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:17:06.298 -07 000000478 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:17:06.298 -07 000000429 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:17:06.298 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:17:06.298 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:17:06.298 -07 000000429 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:17:06.308 -07 000000429 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:17:06.308 -07 000000429 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:17:06.318 -07 000000429 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 18:17:06.318 -07 000000429 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 18:17:06.318 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:17:06.368 -07 000000561 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:17:06.568 -07 000000561 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:17:06.568 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:17:06.568 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:17:06.578 -07 000000433 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:17:06.608 -07 000000618 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:17:06.608 -07 000000415 INF: FPGA: Recv CAMSNAP
17-03-17 18:17:06.608 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 282 ms to get response, and 285 ms overall
17-03-17 18:17:06.968 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 11, FrontChillerTemperature: 4.009895,
17-03-17 18:17:08.218 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-17 18:17:08.348 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 124 ms.
17-03-17 18:17:08.348 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:17:08.348 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 18:17:08.348 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 1778 ms.
17-03-17 18:17:08.348 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 10. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=93, R2=102, Total=195. Warn if over 250 bubbles per interval.
17-03-17 18:17:08.408 -07 000000618 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:17:08.408 -07 000000478 INF: Autofocus start
17-03-17 18:17:08.408 -07 000000478 INF: MeasureProfile start
17-03-17 18:17:08.408 -07 000000415 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:17:08.418 -07 000000618 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:17:08.418 -07 000000618 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:17:08.418 -07 000000478 INF: MeasureProfile done
17-03-17 18:17:08.418 -07 000000478 INF: X=16  Z correction [um]=0.01042744
17-03-17 18:17:08.418 -07 000000478 INF: Autofocus finished
17-03-17 18:17:08.618 -07 000000415 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:17:08.618 -07 000000618 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:17:08.618 -07 000000610 INF: ------------ Scan Snapping tile 13 at Y-position 69.86376953125, Z-position -0.174884185731111. ----------
17-03-17 18:17:08.618 -07 000000610 INF: Cycle	11	Tile	13	Exposure Settings		A	392	G	188	T	188	C	392
17-03-17 18:17:08.618 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36716, sync = True, waitForSettling = True)
17-03-17 18:17:08.628 -07 000000610 INF: Z Motor: Moving to -0.168075 mm, started at -0.174884 mm, distance = 6.81 um
17-03-17 18:17:08.628 -07 000000610 INF: FPGA: Xmit ZDACW 36716\n [Z Motor]
17-03-17 18:17:08.628 -07 000000627 INF: FPGA: Recv ZDACW
17-03-17 18:17:08.638 -07 000000610 INF: FPGA: 'ZDACW 36716' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:17:08.638 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:17:08.638 -07 000000627 INF: FPGA: Recv ZDACR 36716
17-03-17 18:17:08.648 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:17:08.648 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:17:08.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:17:08.798 -07 000000627 INF: FPGA: Recv ZSGSRD 35452
17-03-17 18:17:08.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:17:08.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:17:08.808 -07 000000448 INF: FPGA: Recv ZSGSRD 35462
17-03-17 18:17:08.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:17:08.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:17:08.818 -07 000000448 INF: FPGA: Recv ZSGSRD 35454
17-03-17 18:17:08.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:17:08.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:17:08.828 -07 000000415 INF: FPGA: Recv ZSGSRD 35453
17-03-17 18:17:08.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:17:08.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:17:08.838 -07 000000415 INF: FPGA: Recv ZSGSRD 35459
17-03-17 18:17:08.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:17:08.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:17:08.848 -07 000000415 INF: FPGA: Recv ZSGSRD 35451
17-03-17 18:17:08.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:17:08.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:17:08.858 -07 000000618 INF: FPGA: Recv ZSGSRD 35446
17-03-17 18:17:08.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:17:08.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:17:08.868 -07 000000618 INF: FPGA: Recv ZSGSRD 35450
17-03-17 18:17:08.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:17:08.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:17:08.878 -07 000000618 INF: FPGA: Recv ZSGSRD 35454
17-03-17 18:17:08.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:17:08.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:17:08.888 -07 000000618 INF: FPGA: Recv ZSGSRD 35459
17-03-17 18:17:08.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:17:08.898 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:17:08.898 -07 000000618 INF: FPGA: Recv ZPIEZORD 31202
17-03-17 18:17:08.908 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:17:08.908 -07 000000610 INF: Z Motor: Piezo is near 46.7 V (nominally 0 to 100 V), expect near 56.0 V, since DAC is at 5.603 V. Piezo Error = -9.4 V.
17-03-17 18:17:08.908 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.1 um, Read 10 ADC samples: Avg = 35454 (-167.2 uncal um), Error = 0.9 uncal um, Median = 35454 (-167.2 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 35446 (-167.2 uncal um), Max = 35462 (-167.3 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 18:17:08.908 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35454, posNoise = 8, negNoise = 8
17-03-17 18:17:08.908 -07 000000610 INF: Z Motor: After move to -0.168075, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:17:08.908 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 18:17:08.908 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:17:08.908 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:17:08.908 -07 000000478 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:17:08.908 -07 000000448 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:17:08.908 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:17:08.908 -07 000000431 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:17:08.908 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:17:08.908 -07 000000482 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:17:08.908 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:17:08.908 -07 000000448 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:17:08.908 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:17:08.908 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:17:08.918 -07 000000448 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 18:17:08.918 -07 000000448 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:17:08.918 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 18:17:08.918 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:17:08.928 -07 000000448 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 18:17:08.928 -07 000000448 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 18:17:08.928 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 18:17:08.928 -07 000000431 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 18:17:08.938 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 392 392 188 188 36893 150\n [Camera]
17-03-17 18:17:09.128 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:17:09.528 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 584
17-03-17 18:17:09.528 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 584
17-03-17 18:17:09.528 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:17:09.528 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 585
17-03-17 18:17:09.528 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 585
17-03-17 18:17:09.528 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:17:09.528 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:17:09.528 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 18:17:09.528 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:17:09.528 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-17 18:17:09.718 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36893 777
17-03-17 18:17:09.868 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP turning grn on 927
17-03-17 18:17:09.928 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 393 ms.
17-03-17 18:17:09.928 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-17 18:17:09.928 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:17:09.928 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:17:09.928 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 18:17:09.928 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 397 ms.
17-03-17 18:17:09.928 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 18:17:09.928 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:17:09.928 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:17:09.938 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 408 ms.
17-03-17 18:17:10.058 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1115
17-03-17 18:17:10.058 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1115
17-03-17 18:17:10.058 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:17:10.058 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:17:10.058 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 2485095640, 0x0, 391868352) start.
17-03-17 18:17:10.058 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1115
17-03-17 18:17:10.058 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1115
17-03-17 18:17:10.058 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:17:10.058 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:17:10.058 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 1125912736, 0x0, 418435064) start.
17-03-17 18:17:10.248 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP 1308
17-03-17 18:17:10.248 -07 000000627 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:17:10.248 -07 000000610 INF: FPGA: 'CAMDBLSNAP 392 392 188 188 36893 150' command took 2 ms to send, 1305 ms to get response, and 1315 ms overall
17-03-17 18:17:10.248 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 18:17:10.248 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 14 at Y-position 69.86376953125, Z-Position -0.168087369285128. ------
17-03-17 18:17:10.258 -07 000000482 INF: Y Motor: MoveYZ optimized starting. Moving Y to 70.7026 mm, moving Z to -0.17451 mm
17-03-17 18:17:10.258 -07 000000482 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:17:10.258 -07 000000618 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:17:10.258 -07 000000415 INF: Y Motor: Entering MoveAbsStepped (target = 113124 steps, sync = True, waitForSettling = True)
17-03-17 18:17:10.258 -07 000000415 INF: Y Motor: Moving to 70.7026 mm, started at 69.8638 mm, delta = 0.8388 mm
17-03-17 18:17:10.258 -07 000000627 INF: Z Motor: Entering MoveAbsStepped (DAC = 38123, sync = True, waitForSettling = False)
17-03-17 18:17:10.258 -07 000000627 INF: Z Motor: Moving to -0.174516 mm, started at -0.168087 mm, distance = -6.43 um
17-03-17 18:17:10.258 -07 000000433 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:17:10.268 -07 000000618 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:17:10.268 -07 000000627 INF: FPGA: Xmit ZDACW 38123\n [Z Motor]
17-03-17 18:17:10.268 -07 000000433 INF: FPGA: Recv ZDACW
17-03-17 18:17:10.278 -07 000000627 INF: FPGA: 'ZDACW 38123' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-17 18:17:10.278 -07 000000415 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:17:10.278 -07 000000478 INF: FPGA: Recv YRDPOS 143082
17-03-17 18:17:10.288 -07 000000415 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-17 18:17:10.288 -07 000000415 INF: Y Motor: Encoder = 143082 = motor step 111782.8 = 69.8643 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:17:10.288 -07 000000618 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:17:10.288 -07 000000415 INF: Y Motor: Last commanded position = 69.8726 mm (111796.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:17:10.288 -07 000000415 INF: Y Motor: Moving 1341 steps-18
17-03-17 18:17:10.298 -07 000000627 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:17:10.298 -07 000000478 INF: FPGA: Recv ZDACR 38123
17-03-17 18:17:10.308 -07 000000415 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:17:10.308 -07 000000627 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:17:10.308 -07 000000627 INF: Z Motor: MoveAbsStepped took 44 ms (did NOT wait for settling yet))
17-03-17 18:17:10.468 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 2485095640, 0x0, 391868352) end. Duration was 403 ms.
17-03-17 18:17:10.468 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 18:17:10.468 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:17:10.468 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 1125912736, 0x0, 418435064) end. Duration was 401 ms.
17-03-17 18:17:10.468 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-17 18:17:10.468 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:17:10.468 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:17:10.468 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 18:17:10.468 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-17 18:17:10.478 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-17 18:17:10.488 -07 000000478 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:17:10.488 -07 000000618 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 193 ms to get response, and 223 ms overall
17-03-17 18:17:10.678 -07 000000429 INF: FPGA: Recv YMVTILE
17-03-17 18:17:10.678 -07 000000415 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 394 ms overall
17-03-17 18:17:10.718 -07 000000415 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:17:10.718 -07 000000618 INF: FPGA: Recv YRDPOS 144771
17-03-17 18:17:10.728 -07 000000415 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:17:10.728 -07 000000415 INF: Y Motor: Encoder = 144771 = motor step 113102.3 = 70.6890 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:17:10.728 -07 000000415 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 18:17:10.728 -07 000000415 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.839 mm, average velocity = 2.129 mm/sec
17-03-17 18:17:11.578 -07 000000569 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:17:11.578 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 10. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=93, R2=102, Total=195. Warn if over 250 bubbles per interval.
17-03-17 18:17:11.678 -07 000000415 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:17:11.678 -07 000000478 INF: FPGA: Recv YRDPOS 144772
17-03-17 18:17:11.688 -07 000000415 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:17:11.688 -07 000000415 INF: Y Motor: Encoder = 144772 = motor step 113103.1 = 70.6895 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:17:11.708 -07 000000415 INF: Y Motor: After move to 70.702606, error = -0.013153, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:17:11.708 -07 000000415 INF: Y Motor: Position error after settling (table move) = -27 encoder counts (-0.013 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 18:17:11.708 -07 000000415 INF: Y Motor: Moved to 70.6895 after 1446 ms (table move)
17-03-17 18:17:11.708 -07 000000482 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174516 mm (DAC = 38123)
17-03-17 18:17:11.708 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:17:11.708 -07 000000429 INF: FPGA: Recv ZSGSRD 36453
17-03-17 18:17:11.718 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 18:17:11.718 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:17:11.718 -07 000000626 INF: FPGA: Recv ZSGSRD 36452
17-03-17 18:17:11.728 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:17:11.728 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:17:11.728 -07 000000627 INF: FPGA: Recv ZSGSRD 36450
17-03-17 18:17:11.738 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:17:11.738 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:17:11.738 -07 000000618 INF: FPGA: Recv ZSGSRD 36457
17-03-17 18:17:11.748 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:17:11.748 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:17:11.748 -07 000000433 INF: FPGA: Recv ZSGSRD 36453
17-03-17 18:17:11.758 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:17:11.758 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:17:11.758 -07 000000618 INF: FPGA: Recv ZSGSRD 36455
17-03-17 18:17:11.768 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:17:11.768 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:17:11.768 -07 000000627 INF: FPGA: Recv ZSGSRD 36461
17-03-17 18:17:11.778 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:17:11.778 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:17:11.778 -07 000000415 INF: FPGA: Recv ZSGSRD 36456
17-03-17 18:17:11.788 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:17:11.788 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:17:11.788 -07 000000433 INF: FPGA: Recv ZSGSRD 36456
17-03-17 18:17:11.798 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:17:11.798 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:17:11.798 -07 000000618 INF: FPGA: Recv ZSGSRD 36453
17-03-17 18:17:11.808 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:17:11.808 -07 000000482 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:17:11.808 -07 000000626 INF: FPGA: Recv ZPIEZORD 32574
17-03-17 18:17:11.818 -07 000000482 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:17:11.818 -07 000000482 INF: Z Motor: Piezo is near 49.6 V (nominally 0 to 100 V), expect near 58.2 V, since DAC is at 5.817 V. Piezo Error = -8.6 V.
17-03-17 18:17:11.818 -07 000000482 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.5 um, Read 10 ADC samples: Avg = 36455 (-173.6 uncal um), Error = 0.9 uncal um, Median = 36454 (-173.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 36450 (-173.6 uncal um), Max = 36461 (-173.7 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 18:17:11.818 -07 000000482 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36455, posNoise = 6, negNoise = 5
17-03-17 18:17:11.818 -07 000000482 INF: Z Motor: After move to -0.174516, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:17:11.818 -07 000000482 INF: Z Motor: Settle wait time = 1449 ms, measure time = 107 ms (allowed 150 ms), total time = 1556 ms
17-03-17 18:17:11.818 -07 000000482 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-17 18:17:11.868 -07 000000482 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1607 ms
17-03-17 18:17:11.868 -07 000000482 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:17:11.868 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:17:11.868 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:17:11.868 -07 000000429 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:17:11.868 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:17:11.868 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:17:11.868 -07 000000478 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:17:11.868 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:17:11.868 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:17:11.868 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:17:11.878 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:17:11.888 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-17 18:17:11.888 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 18:17:11.888 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:17:11.938 -07 000000415 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:17:12.138 -07 000000429 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:17:12.138 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:17:12.138 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:17:12.178 -07 000000433 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:17:12.178 -07 000000626 INF: FPGA: Recv CAMSNAP
17-03-17 18:17:12.178 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 281 ms to get response, and 284 ms overall
17-03-17 18:17:12.328 -07 000000482 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 11, FrontChillerTemperature: 3.990831,
17-03-17 18:17:13.918 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2520517904, 0x0, 559484976) start.
17-03-17 18:17:14.048 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2520517904, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 18:17:14.048 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:17:14.048 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 18:17:14.048 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 1911 ms.
17-03-17 18:17:14.078 -07 000000459 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:17:14.078 -07 000000627 INF: Autofocus start
17-03-17 18:17:14.078 -07 000000627 INF: MeasureProfile start
17-03-17 18:17:14.078 -07 000000415 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:17:14.088 -07 000000459 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:17:14.088 -07 000000459 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:17:14.088 -07 000000627 INF: MeasureProfile done
17-03-17 18:17:14.088 -07 000000627 INF: X=16  Z correction [um]=0.01042744
17-03-17 18:17:14.088 -07 000000627 INF: Autofocus finished
17-03-17 18:17:14.288 -07 000000415 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:17:14.288 -07 000000459 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:17:14.288 -07 000000610 INF: ------------ Scan Snapping tile 14 at Y-position 70.689453125, Z-position -0.174518005639031. ----------
17-03-17 18:17:14.288 -07 000000610 INF: Cycle	11	Tile	14	Exposure Settings		A	392	G	188	T	188	C	392
17-03-17 18:17:14.298 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36637, sync = True, waitForSettling = True)
17-03-17 18:17:14.298 -07 000000610 INF: Z Motor: Moving to -0.167713 mm, started at -0.174518 mm, distance = 6.80 um
17-03-17 18:17:14.298 -07 000000610 INF: FPGA: Xmit ZDACW 36637\n [Z Motor]
17-03-17 18:17:14.298 -07 000000459 INF: FPGA: Recv ZDACW
17-03-17 18:17:14.308 -07 000000610 INF: FPGA: 'ZDACW 36637' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:17:14.308 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:17:14.308 -07 000000626 INF: FPGA: Recv ZDACR 36637
17-03-17 18:17:14.318 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:17:14.318 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:17:14.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:17:14.468 -07 000000429 INF: FPGA: Recv ZSGSRD 35394
17-03-17 18:17:14.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:17:14.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:17:14.478 -07 000000478 INF: FPGA: Recv ZSGSRD 35397
17-03-17 18:17:14.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:17:14.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:17:14.488 -07 000000618 INF: FPGA: Recv ZSGSRD 35397
17-03-17 18:17:14.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:17:14.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:17:14.498 -07 000000478 INF: FPGA: Recv ZSGSRD 35398
17-03-17 18:17:14.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:17:14.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:17:14.508 -07 000000448 INF: FPGA: Recv ZSGSRD 35396
17-03-17 18:17:14.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:17:14.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:17:14.518 -07 000000478 INF: FPGA: Recv ZSGSRD 35395
17-03-17 18:17:14.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:17:14.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:17:14.528 -07 000000448 INF: FPGA: Recv ZSGSRD 35401
17-03-17 18:17:14.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:17:14.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:17:14.538 -07 000000478 INF: FPGA: Recv ZSGSRD 35395
17-03-17 18:17:14.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:17:14.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:17:14.548 -07 000000448 INF: FPGA: Recv ZSGSRD 35398
17-03-17 18:17:14.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:17:14.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:17:14.558 -07 000000482 INF: FPGA: Recv ZSGSRD 35395
17-03-17 18:17:14.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:17:14.568 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:17:14.568 -07 000000431 INF: FPGA: Recv ZPIEZORD 31192
17-03-17 18:17:14.578 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:17:14.578 -07 000000610 INF: Z Motor: Piezo is near 46.6 V (nominally 0 to 100 V), expect near 55.9 V, since DAC is at 5.590 V. Piezo Error = -9.3 V.
17-03-17 18:17:14.578 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.7 um, Read 10 ADC samples: Avg = 35397 (-166.9 uncal um), Error = 0.9 uncal um, Median = 35396 (-166.8 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 35394 (-166.8 uncal um), Max = 35401 (-166.9 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 18:17:14.578 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35397, posNoise = 4, negNoise = 3
17-03-17 18:17:14.578 -07 000000610 INF: Z Motor: After move to -0.167713, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:17:14.578 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 18:17:14.578 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:17:14.578 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:17:14.578 -07 000000415 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:17:14.578 -07 000000627 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:17:14.578 -07 000000482 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:17:14.578 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:17:14.578 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:17:14.578 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:17:14.578 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:17:14.578 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:17:14.578 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:17:14.578 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:17:14.588 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 18:17:14.588 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:17:14.588 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 18:17:14.588 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:17:14.598 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 18:17:14.598 -07 000000482 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 18:17:14.598 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 18:17:14.598 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 18:17:14.598 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 392 392 188 188 36814 150\n [Camera]
17-03-17 18:17:14.798 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:17:15.198 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 584
17-03-17 18:17:15.198 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 584
17-03-17 18:17:15.198 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:17:15.198 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:17:15.198 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 18:17:15.198 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 584
17-03-17 18:17:15.198 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 584
17-03-17 18:17:15.198 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:17:15.198 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:17:15.198 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-17 18:17:15.388 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36814 777
17-03-17 18:17:15.538 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning grn on 927
17-03-17 18:17:15.598 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 397 ms.
17-03-17 18:17:15.598 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-17 18:17:15.598 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:17:15.598 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 397 ms.
17-03-17 18:17:15.598 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-17 18:17:15.598 -07 000000433 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:17:15.598 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:17:15.598 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-17 18:17:15.598 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:17:15.608 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-17 18:17:15.728 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1116
17-03-17 18:17:15.728 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1116
17-03-17 18:17:15.728 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:17:15.728 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:17:15.728 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-17 18:17:15.728 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1116
17-03-17 18:17:15.728 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1116
17-03-17 18:17:15.728 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:17:15.728 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:17:15.728 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 18:17:15.918 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP 1307
17-03-17 18:17:15.918 -07 000000478 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:17:15.918 -07 000000610 INF: FPGA: 'CAMDBLSNAP 392 392 188 188 36814 150' command took 2 ms to send, 1304 ms to get response, and 1315 ms overall
17-03-17 18:17:15.918 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 18:17:15.918 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 15 at Y-position 70.689453125, Z-Position -0.167721189193048. ------
17-03-17 18:17:15.918 -07 000000448 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:17:15.928 -07 000000431 INF: Y Motor: MoveYZ optimized starting. Moving Y to 71.5326 mm, moving Z to -0.17442 mm
17-03-17 18:17:15.928 -07 000000431 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:17:16.048 -07 000000482 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:17:16.048 -07 000000448 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 123 ms overall
17-03-17 18:17:16.048 -07 000000448 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:17:16.048 -07 000000478 INF: Y Motor: Entering MoveAbsStepped (target = 114452 steps, sync = True, waitForSettling = True)
17-03-17 18:17:16.048 -07 000000478 INF: Y Motor: Moving to 71.5326 mm, started at 70.6895 mm, delta = 0.8432 mm
17-03-17 18:17:16.048 -07 000000618 INF: Z Motor: Entering MoveAbsStepped (DAC = 38101, sync = True, waitForSettling = False)
17-03-17 18:17:16.048 -07 000000618 INF: Z Motor: Moving to -0.174415 mm, started at -0.167721 mm, distance = -6.69 um
17-03-17 18:17:16.058 -07 000000618 INF: FPGA: Xmit ZDACW 38101\n [Z Motor]
17-03-17 18:17:16.058 -07 000000482 INF: FPGA: Recv ZDACW
17-03-17 18:17:16.068 -07 000000478 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:17:16.068 -07 000000618 INF: FPGA: 'ZDACW 38101' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-17 18:17:16.068 -07 000000459 INF: FPGA: Recv YRDPOS 144772
17-03-17 18:17:16.078 -07 000000478 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-17 18:17:16.078 -07 000000618 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:17:16.078 -07 000000478 INF: Y Motor: Encoder = 144772 = motor step 113103.1 = 70.6895 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:17:16.078 -07 000000478 INF: Y Motor: Last commanded position = 70.7026 mm (113124.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:17:16.078 -07 000000478 INF: Y Motor: Moving 1349 steps-28
17-03-17 18:17:16.078 -07 000000482 INF: FPGA: Recv ZDACR 38101
17-03-17 18:17:16.088 -07 000000618 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 18:17:16.088 -07 000000618 INF: Z Motor: MoveAbsStepped took 35 ms (did NOT wait for settling yet))
17-03-17 18:17:16.088 -07 000000478 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:17:16.118 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 387 ms.
17-03-17 18:17:16.118 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 18:17:16.118 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:17:16.118 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 393 ms.
17-03-17 18:17:16.118 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:17:16.118 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-17 18:17:16.118 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:17:16.128 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 18:17:16.128 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 18:17:16.128 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-17 18:17:16.248 -07 000000459 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:17:16.248 -07 000000448 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 196 ms to get response, and 202 ms overall
17-03-17 18:17:16.458 -07 000000459 INF: FPGA: Recv YMVTILE
17-03-17 18:17:16.458 -07 000000478 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-17 18:17:16.498 -07 000000478 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:17:16.498 -07 000000482 INF: FPGA: Recv YRDPOS 146472
17-03-17 18:17:16.508 -07 000000478 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:17:16.508 -07 000000478 INF: Y Motor: Encoder = 146472 = motor step 114431.3 = 71.5195 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:17:16.508 -07 000000478 INF: Y Motor: Position error before settling (table move) = -27 encoder counts (-0.013 mm)
17-03-17 18:17:16.508 -07 000000478 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 387 ms, distance = 0.843 mm, average velocity = 2.179 mm/sec
17-03-17 18:17:16.578 -07 000000618 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:17:16.578 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 10. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=93, R2=102, Total=195. Warn if over 250 bubbles per interval.
17-03-17 18:17:17.458 -07 000000478 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:17:17.458 -07 000000459 INF: FPGA: Recv YRDPOS 146472
17-03-17 18:17:17.468 -07 000000478 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:17:17.468 -07 000000478 INF: Y Motor: Encoder = 146472 = motor step 114431.3 = 71.5195 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:17:17.478 -07 000000478 INF: Y Motor: After move to 71.532608, error = -0.013077, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:17:17.488 -07 000000478 INF: Y Motor: Position error after settling (table move) = -27 encoder counts (-0.013 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:17:17.488 -07 000000478 INF: Y Motor: Moved to 71.5195 after 1435 ms (table move)
17-03-17 18:17:17.488 -07 000000431 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174415 mm (DAC = 38101)
17-03-17 18:17:17.488 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:17:17.488 -07 000000459 INF: FPGA: Recv ZSGSRD 36441
17-03-17 18:17:17.498 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 18:17:17.498 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:17:17.498 -07 000000429 INF: FPGA: Recv ZSGSRD 36438
17-03-17 18:17:17.508 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:17:17.508 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:17:17.508 -07 000000618 INF: FPGA: Recv ZSGSRD 36440
17-03-17 18:17:17.518 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:17:17.518 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:17:17.518 -07 000000448 INF: FPGA: Recv ZSGSRD 36442
17-03-17 18:17:17.528 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:17:17.528 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:17:17.528 -07 000000415 INF: FPGA: Recv ZSGSRD 36448
17-03-17 18:17:17.538 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:17:17.538 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:17:17.538 -07 000000482 INF: FPGA: Recv ZSGSRD 36446
17-03-17 18:17:17.548 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:17:17.548 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:17:17.548 -07 000000618 INF: FPGA: Recv ZSGSRD 36443
17-03-17 18:17:17.558 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:17:17.558 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:17:17.558 -07 000000482 INF: FPGA: Recv ZSGSRD 36435
17-03-17 18:17:17.568 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:17:17.568 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:17:17.568 -07 000000415 INF: FPGA: Recv ZSGSRD 36437
17-03-17 18:17:17.578 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:17:17.578 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:17:17.578 -07 000000478 INF: FPGA: Recv ZSGSRD 36437
17-03-17 18:17:17.588 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:17:17.588 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:17:17.588 -07 000000618 INF: FPGA: Recv ZPIEZORD 32574
17-03-17 18:17:17.598 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:17:17.598 -07 000000431 INF: Z Motor: Piezo is near 49.6 V (nominally 0 to 100 V), expect near 58.1 V, since DAC is at 5.814 V. Piezo Error = -8.6 V.
17-03-17 18:17:17.598 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.4 um, Read 10 ADC samples: Avg = 36441 (-173.5 uncal um), Error = 0.9 uncal um, Median = 36440 (-173.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 36435 (-173.5 uncal um), Max = 36448 (-173.6 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 18:17:17.598 -07 000000431 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36441, posNoise = 7, negNoise = 6
17-03-17 18:17:17.598 -07 000000431 INF: Z Motor: After move to -0.174415, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:17:17.598 -07 000000431 INF: Z Motor: Settle wait time = 1439 ms, measure time = 107 ms (allowed 150 ms), total time = 1546 ms
17-03-17 18:17:17.598 -07 000000431 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-17 18:17:17.648 -07 000000431 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1720 ms
17-03-17 18:17:17.648 -07 000000431 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:17:17.648 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:17:17.648 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:17:17.648 -07 000000429 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:17:17.648 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:17:17.648 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:17:17.648 -07 000000415 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:17:17.658 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:17:17.658 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:17:17.658 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:17:17.658 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:17:17.668 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 18:17:17.668 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 18:17:17.668 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:17:17.688 -07 000000618 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 11, FrontChillerTemperature: 3.99219,
17-03-17 18:17:17.718 -07 000000448 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:17:17.918 -07 000000415 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:17:17.918 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:17:17.918 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:17:17.918 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-17 18:17:17.958 -07 000000626 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:17:17.958 -07 000000618 INF: FPGA: Recv CAMSNAP
17-03-17 18:17:17.958 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 283 ms to get response, and 284 ms overall
17-03-17 18:17:18.048 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 18:17:18.048 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:17:18.048 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 18:17:18.048 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 18:17:18.058 -07 000000431 INF: Autofocus start
17-03-17 18:17:18.058 -07 000000431 INF: MeasureProfile start
17-03-17 18:17:18.058 -07 000000482 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:17:18.058 -07 000000459 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:17:18.068 -07 000000482 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:17:18.068 -07 000000482 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:17:18.068 -07 000000431 INF: MeasureProfile done
17-03-17 18:17:18.068 -07 000000431 INF: X=16  Z correction [um]=0.01042744
17-03-17 18:17:18.068 -07 000000431 INF: Autofocus finished
17-03-17 18:17:18.268 -07 000000478 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:17:18.268 -07 000000482 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:17:18.268 -07 000000610 INF: ------------ Scan Snapping tile 15 at Y-position 71.51953125, Z-position -0.174428066669046. ----------
17-03-17 18:17:18.268 -07 000000610 INF: Cycle	11	Tile	15	Exposure Settings		A	392	G	188	T	188	C	392
17-03-17 18:17:18.278 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36616, sync = True, waitForSettling = True)
17-03-17 18:17:18.278 -07 000000610 INF: Z Motor: Moving to -0.167617 mm, started at -0.174428 mm, distance = 6.81 um
17-03-17 18:17:18.278 -07 000000610 INF: FPGA: Xmit ZDACW 36616\n [Z Motor]
17-03-17 18:17:18.278 -07 000000626 INF: FPGA: Recv ZDACW
17-03-17 18:17:18.288 -07 000000610 INF: FPGA: 'ZDACW 36616' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:17:18.288 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:17:18.288 -07 000000415 INF: FPGA: Recv ZDACR 36616
17-03-17 18:17:18.298 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:17:18.298 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:17:18.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:17:18.448 -07 000000429 INF: FPGA: Recv ZSGSRD 35386
17-03-17 18:17:18.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:17:18.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:17:18.458 -07 000000429 INF: FPGA: Recv ZSGSRD 35382
17-03-17 18:17:18.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:17:18.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:17:18.468 -07 000000433 INF: FPGA: Recv ZSGSRD 35389
17-03-17 18:17:18.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:17:18.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:17:18.478 -07 000000429 INF: FPGA: Recv ZSGSRD 35377
17-03-17 18:17:18.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:17:18.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:17:18.488 -07 000000433 INF: FPGA: Recv ZSGSRD 35380
17-03-17 18:17:18.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:17:18.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:17:18.498 -07 000000429 INF: FPGA: Recv ZSGSRD 35384
17-03-17 18:17:18.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:17:18.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:17:18.508 -07 000000433 INF: FPGA: Recv ZSGSRD 35385
17-03-17 18:17:18.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:17:18.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:17:18.518 -07 000000429 INF: FPGA: Recv ZSGSRD 35381
17-03-17 18:17:18.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:17:18.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:17:18.528 -07 000000429 INF: FPGA: Recv ZSGSRD 35387
17-03-17 18:17:18.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:17:18.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:17:18.538 -07 000000429 INF: FPGA: Recv ZSGSRD 35383
17-03-17 18:17:18.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:17:18.548 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:17:18.548 -07 000000429 INF: FPGA: Recv ZPIEZORD 31184
17-03-17 18:17:18.558 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:17:18.558 -07 000000610 INF: Z Motor: Piezo is near 46.6 V (nominally 0 to 100 V), expect near 55.9 V, since DAC is at 5.587 V. Piezo Error = -9.3 V.
17-03-17 18:17:18.558 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.6 um, Read 10 ADC samples: Avg = 35383 (-166.8 uncal um), Error = 0.9 uncal um, Median = 35384 (-166.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35377 (-166.7 uncal um), Max = 35389 (-166.8 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 18:17:18.558 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35383, posNoise = 6, negNoise = 6
17-03-17 18:17:18.558 -07 000000610 INF: Z Motor: After move to -0.167617, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:17:18.558 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 18:17:18.558 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:17:18.558 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:17:18.558 -07 000000429 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:17:18.558 -07 000000459 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:17:18.558 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:17:18.558 -07 000000415 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:17:18.558 -07 000000478 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:17:18.558 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:17:18.558 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:17:18.558 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:17:18.558 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:17:18.558 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:17:18.568 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 18:17:18.568 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:17:18.568 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 18:17:18.568 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:17:18.578 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 18:17:18.578 -07 000000459 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 18:17:18.578 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 18:17:18.578 -07 000000415 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 18:17:18.578 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 392 392 188 188 36793 150\n [Camera]
17-03-17 18:17:18.778 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:17:19.178 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 584
17-03-17 18:17:19.178 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 584
17-03-17 18:17:19.178 -07 000000433 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:17:19.178 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 584
17-03-17 18:17:19.178 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 584
17-03-17 18:17:19.178 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:17:19.178 -07 000000433 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:17:19.178 -07 000000433 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-17 18:17:19.188 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:17:19.188 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 1055068208, 0x0, 418435064) start.
17-03-17 18:17:19.368 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36793 777
17-03-17 18:17:19.518 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP turning grn on 927
17-03-17 18:17:19.568 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 1055068208, 0x0, 418435064) end. Duration was 380 ms.
17-03-17 18:17:19.568 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 381 ms.
17-03-17 18:17:19.568 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:17:19.568 -07 000000433 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 385 ms.
17-03-17 18:17:19.568 -07 000000433 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 18:17:19.568 -07 000000433 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:17:19.568 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:17:19.568 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:17:19.568 -07 000000433 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 18:17:19.578 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-17 18:17:19.708 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1115
17-03-17 18:17:19.708 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1115
17-03-17 18:17:19.708 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:17:19.708 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1115
17-03-17 18:17:19.708 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1115
17-03-17 18:17:19.708 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:17:19.718 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:17:19.718 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 1090490472, 0x0, 391868352) start.
17-03-17 18:17:19.718 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:17:19.718 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 1125912736, 0x0, 418435064) start.
17-03-17 18:17:19.898 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP 1307
17-03-17 18:17:19.898 -07 000000459 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:17:19.898 -07 000000610 INF: FPGA: 'CAMDBLSNAP 392 392 188 188 36793 150' command took 2 ms to send, 1304 ms to get response, and 1314 ms overall
17-03-17 18:17:19.898 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 18:17:19.898 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 16 at Y-position 71.51953125, Z-Position -0.167631250223063. ------
17-03-17 18:17:20.018 -07 000000429 INF: Y Motor: MoveYZ optimized starting. Moving Y to 72.3626 mm, moving Z to -0.17364 mm
17-03-17 18:17:20.018 -07 000000429 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:17:20.018 -07 000000482 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:17:20.018 -07 000000561 INF: Y Motor: Entering MoveAbsStepped (target = 115780 steps, sync = True, waitForSettling = True)
17-03-17 18:17:20.018 -07 000000561 INF: Y Motor: Moving to 72.3626 mm, started at 71.5195 mm, delta = 0.8431 mm
17-03-17 18:17:20.028 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:17:20.028 -07 000000626 INF: Z Motor: Entering MoveAbsStepped (DAC = 37932, sync = True, waitForSettling = False)
17-03-17 18:17:20.028 -07 000000626 INF: Z Motor: Moving to -0.173642 mm, started at -0.167631 mm, distance = -6.01 um
17-03-17 18:17:20.028 -07 000000512 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:17:20.028 -07 000000482 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 3 ms to get response, and 6 ms overall
17-03-17 18:17:20.028 -07 000000448 INF: FPGA: Recv YRDPOS 146473
17-03-17 18:17:20.038 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:17:20.038 -07 000000561 INF: Y Motor: Encoder = 146473 = motor step 114432.0 = 71.5200 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:17:20.038 -07 000000626 INF: FPGA: Xmit ZDACW 37932\n [Z Motor]
17-03-17 18:17:20.038 -07 000000448 INF: FPGA: Recv ZDACW
17-03-17 18:17:20.038 -07 000000561 INF: Y Motor: Last commanded position = 71.5326 mm (114452.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:17:20.038 -07 000000561 INF: Y Motor: Moving 1348 steps-27
17-03-17 18:17:20.048 -07 000000482 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:17:20.048 -07 000000626 INF: FPGA: 'ZDACW 37932' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 18:17:20.058 -07 000000626 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:17:20.058 -07 000000478 INF: FPGA: Recv ZDACR 37932
17-03-17 18:17:20.068 -07 000000561 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:17:20.068 -07 000000626 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 18:17:20.068 -07 000000626 INF: Z Motor: MoveAbsStepped took 40 ms (did NOT wait for settling yet))
17-03-17 18:17:20.098 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 1090490472, 0x0, 391868352) end. Duration was 381 ms.
17-03-17 18:17:20.098 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 18:17:20.098 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:17:20.098 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 1125912736, 0x0, 418435064) end. Duration was 381 ms.
17-03-17 18:17:20.098 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-17 18:17:20.098 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:17:20.108 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:17:20.108 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 18:17:20.108 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:17:20.108 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-17 18:17:20.248 -07 000000448 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:17:20.248 -07 000000482 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 219 ms overall
17-03-17 18:17:20.438 -07 000000626 INF: FPGA: Recv YMVTILE
17-03-17 18:17:20.438 -07 000000561 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 401 ms overall
17-03-17 18:17:20.478 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:17:20.478 -07 000000431 INF: FPGA: Recv YRDPOS 148173
17-03-17 18:17:20.488 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:17:20.488 -07 000000561 INF: Y Motor: Encoder = 148173 = motor step 115760.2 = 72.3501 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:17:20.488 -07 000000561 INF: Y Motor: Position error before settling (table move) = -26 encoder counts (-0.013 mm)
17-03-17 18:17:20.488 -07 000000561 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 401 ms, distance = 0.843 mm, average velocity = 2.102 mm/sec
17-03-17 18:17:21.438 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:17:21.438 -07 000000459 INF: FPGA: Recv YRDPOS 148173
17-03-17 18:17:21.448 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:17:21.448 -07 000000561 INF: Y Motor: Encoder = 148173 = motor step 115760.2 = 72.3501 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:17:21.468 -07 000000561 INF: Y Motor: After move to 72.362610, error = -0.012512, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:17:21.468 -07 000000561 INF: Y Motor: Position error after settling (table move) = -26 encoder counts (-0.013 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:17:21.468 -07 000000561 INF: Y Motor: Moved to 72.3501 after 1443 ms (table move)
17-03-17 18:17:21.468 -07 000000429 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173642 mm (DAC = 37932)
17-03-17 18:17:21.468 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:17:21.468 -07 000000448 INF: FPGA: Recv ZSGSRD 36327
17-03-17 18:17:21.478 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 18:17:21.478 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:17:21.478 -07 000000459 INF: FPGA: Recv ZSGSRD 36313
17-03-17 18:17:21.488 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:17:21.488 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:17:21.488 -07 000000433 INF: FPGA: Recv ZSGSRD 36321
17-03-17 18:17:21.498 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:17:21.498 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:17:21.498 -07 000000459 INF: FPGA: Recv ZSGSRD 36320
17-03-17 18:17:21.508 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:17:21.508 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:17:21.508 -07 000000433 INF: FPGA: Recv ZSGSRD 36316
17-03-17 18:17:21.518 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:17:21.518 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:17:21.518 -07 000000415 INF: FPGA: Recv ZSGSRD 36316
17-03-17 18:17:21.528 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:17:21.528 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:17:21.528 -07 000000561 INF: FPGA: Recv ZSGSRD 36321
17-03-17 18:17:21.538 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:17:21.538 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:17:21.538 -07 000000415 INF: FPGA: Recv ZSGSRD 36325
17-03-17 18:17:21.548 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:17:21.548 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:17:21.548 -07 000000561 INF: FPGA: Recv ZSGSRD 36320
17-03-17 18:17:21.558 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:17:21.558 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:17:21.558 -07 000000626 INF: FPGA: Recv ZSGSRD 36321
17-03-17 18:17:21.568 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:17:21.568 -07 000000429 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:17:21.568 -07 000000415 INF: FPGA: Recv ZPIEZORD 32456
17-03-17 18:17:21.578 -07 000000429 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:17:21.578 -07 000000429 INF: Z Motor: Piezo is near 49.3 V (nominally 0 to 100 V), expect near 57.9 V, since DAC is at 5.788 V. Piezo Error = -8.5 V.
17-03-17 18:17:21.578 -07 000000429 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.6 um, Read 10 ADC samples: Avg = 36320 (-172.8 uncal um), Error = 0.9 uncal um, Median = 36320 (-172.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 36313 (-172.7 uncal um), Max = 36327 (-172.8 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 18:17:21.578 -07 000000429 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36320, posNoise = 7, negNoise = 7
17-03-17 18:17:21.578 -07 000000429 INF: Z Motor: After move to -0.173642, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:17:21.578 -07 000000429 INF: Z Motor: Settle wait time = 1446 ms, measure time = 105 ms (allowed 150 ms), total time = 1551 ms
17-03-17 18:17:21.578 -07 000000429 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 18:17:21.578 -07 000000431 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:17:21.578 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 10. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=93, R2=102, Total=195. Warn if over 250 bubbles per interval.
17-03-17 18:17:21.628 -07 000000429 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1603 ms
17-03-17 18:17:21.628 -07 000000429 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:17:21.628 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:17:21.628 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:17:21.628 -07 000000448 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:17:21.628 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:17:21.628 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:17:21.628 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:17:21.628 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 18:17:21.628 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:17:21.638 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:17:21.638 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:17:21.638 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 18:17:21.638 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-17 18:17:21.648 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:17:21.688 -07 000000433 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:17:21.888 -07 000000482 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:17:21.888 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:17:21.888 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:17:21.888 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-17 18:17:21.928 -07 000000448 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:17:21.928 -07 000000433 INF: FPGA: Recv CAMSNAP
17-03-17 18:17:21.928 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 277 ms to get response, and 284 ms overall
17-03-17 18:17:22.008 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 18:17:22.008 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:17:22.008 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 18:17:22.008 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 18:17:22.028 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:17:22.028 -07 000000561 INF: Autofocus start
17-03-17 18:17:22.028 -07 000000561 INF: MeasureProfile start
17-03-17 18:17:22.028 -07 000000482 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:17:22.038 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 18:17:22.038 -07 000000431 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:17:22.048 -07 000000561 INF: MeasureProfile done
17-03-17 18:17:22.048 -07 000000561 INF: X=-16  Z correction [um]=-0.1496812
17-03-17 18:17:22.048 -07 000000561 INF: Autofocus finished
17-03-17 18:17:22.238 -07 000000478 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:17:22.238 -07 000000431 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:17:22.238 -07 000000610 INF: ------------ Scan Snapping tile 16 at Y-position 72.35009765625, Z-position -0.173650736999893. ----------
17-03-17 18:17:22.248 -07 000000610 INF: Cycle	11	Tile	16	Exposure Settings		A	392	G	188	T	188	C	392
17-03-17 18:17:22.248 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36412, sync = True, waitForSettling = True)
17-03-17 18:17:22.248 -07 000000610 INF: Z Motor: Moving to -0.166683 mm, started at -0.173651 mm, distance = 6.97 um
17-03-17 18:17:22.248 -07 000000610 INF: FPGA: Xmit ZDACW 36412\n [Z Motor]
17-03-17 18:17:22.248 -07 000000415 INF: FPGA: Recv ZDACW
17-03-17 18:17:22.258 -07 000000610 INF: FPGA: 'ZDACW 36412' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:17:22.258 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:17:22.258 -07 000000433 INF: FPGA: Recv ZDACR 36412
17-03-17 18:17:22.268 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:17:22.268 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:17:22.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:17:22.418 -07 000000478 INF: FPGA: Recv ZSGSRD 35236
17-03-17 18:17:22.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:17:22.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:17:22.428 -07 000000448 INF: FPGA: Recv ZSGSRD 35236
17-03-17 18:17:22.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:17:22.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:17:22.438 -07 000000478 INF: FPGA: Recv ZSGSRD 35238
17-03-17 18:17:22.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:17:22.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:17:22.448 -07 000000459 INF: FPGA: Recv ZSGSRD 35237
17-03-17 18:17:22.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:17:22.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:17:22.458 -07 000000448 INF: FPGA: Recv ZSGSRD 35239
17-03-17 18:17:22.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:17:22.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:17:22.468 -07 000000448 INF: FPGA: Recv ZSGSRD 35241
17-03-17 18:17:22.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:17:22.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:17:22.478 -07 000000415 INF: FPGA: Recv ZSGSRD 35236
17-03-17 18:17:22.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:17:22.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:17:22.488 -07 000000482 INF: FPGA: Recv ZSGSRD 35238
17-03-17 18:17:22.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:17:22.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:17:22.498 -07 000000482 INF: FPGA: Recv ZSGSRD 35236
17-03-17 18:17:22.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:17:22.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:17:22.508 -07 000000618 INF: FPGA: Recv ZSGSRD 35240
17-03-17 18:17:22.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:17:22.518 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:17:22.518 -07 000000431 INF: FPGA: Recv ZPIEZORD 31007
17-03-17 18:17:22.528 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:17:22.528 -07 000000610 INF: Z Motor: Piezo is near 46.2 V (nominally 0 to 100 V), expect near 55.6 V, since DAC is at 5.556 V. Piezo Error = -9.3 V.
17-03-17 18:17:22.528 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.7 um, Read 10 ADC samples: Avg = 35238 (-165.8 uncal um), Error = 0.9 uncal um, Median = 35238 (-165.8 uncal um), StdDev = 2 (0.0 uncal um), Range = 5 (0.0 uncal um), Min = 35236 (-165.8 uncal um), Max = 35241 (-165.9 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 2 (0.0 uncal um)
17-03-17 18:17:22.528 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35238, posNoise = 3, negNoise = 2
17-03-17 18:17:22.528 -07 000000610 INF: Z Motor: After move to -0.166683, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:17:22.528 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-17 18:17:22.528 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:17:22.528 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:17:22.528 -07 000000482 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:17:22.528 -07 000000415 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:17:22.528 -07 000000459 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:17:22.528 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:17:22.528 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:17:22.528 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:17:22.528 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 18:17:22.528 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:17:22.528 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 18:17:22.528 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:17:22.528 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 18:17:22.528 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:17:22.528 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 18:17:22.538 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:17:22.538 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 18:17:22.538 -07 000000459 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 12 ms.
17-03-17 18:17:22.548 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 18:17:22.548 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 18:17:22.548 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 392 392 188 188 36588 150\n [Camera]
17-03-17 18:17:22.748 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:17:23.048 -07 000000433 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 11, FrontChillerTemperature: 3.99219,
17-03-17 18:17:23.138 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 584
17-03-17 18:17:23.138 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 584
17-03-17 18:17:23.138 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:17:23.138 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 584
17-03-17 18:17:23.138 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 584
17-03-17 18:17:23.148 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:17:23.148 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:17:23.148 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-17 18:17:23.148 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:17:23.148 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 1055068208, 0x0, 418435064) start.
17-03-17 18:17:23.328 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36588 777
17-03-17 18:17:23.478 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP turning grn on 927
17-03-17 18:17:23.518 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 372 ms.
17-03-17 18:17:23.518 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 372 ms.
17-03-17 18:17:23.518 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:17:23.518 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 1055068208, 0x0, 418435064) end. Duration was 370 ms.
17-03-17 18:17:23.518 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 371 ms.
17-03-17 18:17:23.518 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:17:23.518 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:17:23.528 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 18:17:23.528 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:17:23.528 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 18:17:23.668 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1115
17-03-17 18:17:23.668 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1115
17-03-17 18:17:23.668 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:17:23.678 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:17:23.678 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1115
17-03-17 18:17:23.678 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 18:17:23.678 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1115
17-03-17 18:17:23.678 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:17:23.678 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:17:23.678 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 2485095640, 0x0, 418435064) start.
17-03-17 18:17:23.868 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP 1310
17-03-17 18:17:23.868 -07 000000459 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:17:23.868 -07 000000610 INF: FPGA: 'CAMDBLSNAP 392 392 188 188 36588 150' command took 2 ms to send, 1312 ms to get response, and 1317 ms overall
17-03-17 18:17:23.868 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 18:17:23.868 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 17 at Y-position 72.35009765625, Z-Position -0.166699739462508. ------
17-03-17 18:17:23.868 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:17:23.868 -07 000000618 INF: Y Motor: MoveYZ optimized starting. Moving Y to 73.1926 mm, moving Z to -0.17329 mm
17-03-17 18:17:23.868 -07 000000618 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:17:23.868 -07 000000482 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:17:23.878 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 18:17:23.878 -07 000000512 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:17:23.878 -07 000000459 INF: Z Motor: Entering MoveAbsStepped (DAC = 37855, sync = True, waitForSettling = False)
17-03-17 18:17:23.878 -07 000000459 INF: Z Motor: Moving to -0.173289 mm, started at -0.166700 mm, distance = -6.59 um
17-03-17 18:17:23.878 -07 000000415 INF: Y Motor: Entering MoveAbsStepped (target = 117108 steps, sync = True, waitForSettling = True)
17-03-17 18:17:23.878 -07 000000415 INF: Y Motor: Moving to 73.1926 mm, started at 72.3501 mm, delta = 0.8425 mm
17-03-17 18:17:23.888 -07 000000415 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:17:23.888 -07 000000482 INF: FPGA: Recv YRDPOS 148173
17-03-17 18:17:23.898 -07 000000415 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-17 18:17:23.898 -07 000000415 INF: Y Motor: Encoder = 148173 = motor step 115760.2 = 72.3501 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:17:23.898 -07 000000415 INF: Y Motor: Last commanded position = 72.3626 mm (115780.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:17:23.898 -07 000000415 INF: Y Motor: Moving 1348 steps-26
17-03-17 18:17:23.898 -07 000000459 INF: FPGA: Xmit ZDACW 37855\n [Z Motor]
17-03-17 18:17:23.898 -07 000000448 INF: FPGA: Recv ZDACW
17-03-17 18:17:23.908 -07 000000459 INF: FPGA: 'ZDACW 37855' command took 3 ms to send, 0 ms to get response, and 27 ms overall
17-03-17 18:17:23.908 -07 000000459 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:17:23.908 -07 000000482 INF: FPGA: Recv ZDACR 37855
17-03-17 18:17:23.918 -07 000000415 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:17:23.918 -07 000000459 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:17:23.918 -07 000000459 INF: Z Motor: MoveAbsStepped took 38 ms (did NOT wait for settling yet))
17-03-17 18:17:24.048 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 2485095640, 0x0, 418435064) end. Duration was 376 ms.
17-03-17 18:17:24.058 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-17 18:17:24.058 -07 000000433 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:17:24.058 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 379 ms.
17-03-17 18:17:24.058 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 18:17:24.058 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:17:24.058 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:17:24.058 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 18:17:24.058 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-17 18:17:24.068 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 18:17:24.078 -07 000000459 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:17:24.078 -07 000000512 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:17:24.288 -07 000000448 INF: FPGA: Recv YMVTILE
17-03-17 18:17:24.288 -07 000000415 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 18:17:24.328 -07 000000415 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:17:24.328 -07 000000459 INF: FPGA: Recv YRDPOS 149866
17-03-17 18:17:24.338 -07 000000415 INF: FPGA: 'YRDPOS' command took 1 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:17:24.338 -07 000000415 INF: Y Motor: Encoder = 149866 = motor step 117082.8 = 73.1768 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:17:24.338 -07 000000415 INF: Y Motor: Position error before settling (table move) = -32 encoder counts (-0.016 mm)
17-03-17 18:17:24.338 -07 000000415 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.843 mm, average velocity = 2.117 mm/sec
17-03-17 18:17:25.288 -07 000000415 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:17:25.288 -07 000000478 INF: FPGA: Recv YRDPOS 149866
17-03-17 18:17:25.298 -07 000000415 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:17:25.298 -07 000000415 INF: Y Motor: Encoder = 149866 = motor step 117082.8 = 73.1768 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:17:25.318 -07 000000415 INF: Y Motor: After move to 73.192604, error = -0.015846, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:17:25.318 -07 000000415 INF: Y Motor: Position error after settling (table move) = -32 encoder counts (-0.016 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:17:25.318 -07 000000415 INF: Y Motor: Moved to 73.1768 after 1443 ms (table move)
17-03-17 18:17:25.318 -07 000000618 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173289 mm (DAC = 37855)
17-03-17 18:17:25.318 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:17:25.328 -07 000000478 INF: FPGA: Recv ZSGSRD 36276
17-03-17 18:17:25.328 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 4 ms to get response, and 5 ms overall
17-03-17 18:17:25.328 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:17:25.328 -07 000000459 INF: FPGA: Recv ZSGSRD 36265
17-03-17 18:17:25.338 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 18:17:25.338 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:17:25.338 -07 000000448 INF: FPGA: Recv ZSGSRD 36262
17-03-17 18:17:25.348 -07 000000618 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:17:25.348 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:17:25.348 -07 000000502 INF: FPGA: Recv ZSGSRD 36261
17-03-17 18:17:25.358 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:17:25.358 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:17:25.358 -07 000000448 INF: FPGA: Recv ZSGSRD 36267
17-03-17 18:17:25.368 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:17:25.368 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:17:25.368 -07 000000478 INF: FPGA: Recv ZSGSRD 36271
17-03-17 18:17:25.378 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:17:25.378 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:17:25.378 -07 000000502 INF: FPGA: Recv ZSGSRD 36268
17-03-17 18:17:25.388 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:17:25.388 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:17:25.388 -07 000000431 INF: FPGA: Recv ZSGSRD 36269
17-03-17 18:17:25.398 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:17:25.398 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:17:25.398 -07 000000478 INF: FPGA: Recv ZSGSRD 36260
17-03-17 18:17:25.408 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:17:25.408 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:17:25.408 -07 000000433 INF: FPGA: Recv ZSGSRD 36267
17-03-17 18:17:25.418 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:17:25.418 -07 000000618 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:17:25.418 -07 000000433 INF: FPGA: Recv ZPIEZORD 32401
17-03-17 18:17:25.428 -07 000000618 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:17:25.428 -07 000000618 INF: Z Motor: Piezo is near 49.2 V (nominally 0 to 100 V), expect near 57.8 V, since DAC is at 5.776 V. Piezo Error = -8.5 V.
17-03-17 18:17:25.428 -07 000000618 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.3 um, Read 10 ADC samples: Avg = 36267 (-172.4 uncal um), Error = 0.9 uncal um, Median = 36267 (-172.4 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 36260 (-172.4 uncal um), Max = 36276 (-172.5 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 18:17:25.428 -07 000000618 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36267, posNoise = 9, negNoise = 7
17-03-17 18:17:25.428 -07 000000618 INF: Z Motor: After move to -0.173289, error = -0.000021, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:17:25.428 -07 000000618 INF: Z Motor: Settle wait time = 1447 ms, measure time = 101 ms (allowed 150 ms), total time = 1548 ms
17-03-17 18:17:25.428 -07 000000618 INF: Z Motor: Waiting extra 49 ms after reading position to reach expected total of 150 ms
17-03-17 18:17:25.478 -07 000000618 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1602 ms
17-03-17 18:17:25.478 -07 000000618 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:17:25.478 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:17:25.478 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:17:25.478 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:17:25.478 -07 000000431 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:17:25.478 -07 000000482 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:17:25.478 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:17:25.488 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 18:17:25.488 -07 000000482 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:17:25.488 -07 000000482 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:17:25.488 -07 000000482 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:17:25.498 -07 000000482 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 18:17:25.498 -07 000000482 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-17 18:17:25.498 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:17:25.538 -07 000000431 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:17:25.738 -07 000000431 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:17:25.738 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:17:25.738 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:17:25.738 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2520517904, 0x0, 559484976) start.
17-03-17 18:17:25.778 -07 000000618 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:17:25.778 -07 000000431 INF: FPGA: Recv CAMSNAP
17-03-17 18:17:25.778 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 278 ms to get response, and 285 ms overall
17-03-17 18:17:25.858 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2520517904, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 18:17:25.858 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:17:25.858 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 18:17:25.858 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 18:17:25.878 -07 000000415 INF: Autofocus start
17-03-17 18:17:25.878 -07 000000415 INF: MeasureProfile start
17-03-17 18:17:25.878 -07 000000448 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:17:25.878 -07 000000482 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:17:25.888 -07 000000448 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:17:25.888 -07 000000448 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:17:25.888 -07 000000415 INF: MeasureProfile done
17-03-17 18:17:25.888 -07 000000415 INF: X=16  Z correction [um]=0.01042744
17-03-17 18:17:25.888 -07 000000415 INF: Autofocus finished
17-03-17 18:17:26.088 -07 000000459 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:17:26.088 -07 000000448 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:17:26.088 -07 000000610 INF: ------------ Scan Snapping tile 17 at Y-position 73.1767578125, Z-position -0.17331025375638. ----------
17-03-17 18:17:26.098 -07 000000610 INF: Cycle	11	Tile	17	Exposure Settings		A	392	G	188	T	188	C	392
17-03-17 18:17:26.098 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36370, sync = True, waitForSettling = True)
17-03-17 18:17:26.098 -07 000000610 INF: Z Motor: Moving to -0.166491 mm, started at -0.173310 mm, distance = 6.82 um
17-03-17 18:17:26.098 -07 000000610 INF: FPGA: Xmit ZDACW 36370\n [Z Motor]
17-03-17 18:17:26.098 -07 000000502 INF: FPGA: Recv ZDACW
17-03-17 18:17:26.108 -07 000000610 INF: FPGA: 'ZDACW 36370' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:17:26.108 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:17:26.108 -07 000000478 INF: FPGA: Recv ZDACR 36370
17-03-17 18:17:26.118 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:17:26.118 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:17:26.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:17:26.268 -07 000000478 INF: FPGA: Recv ZSGSRD 35210
17-03-17 18:17:26.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:17:26.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:17:26.278 -07 000000618 INF: FPGA: Recv ZSGSRD 35207
17-03-17 18:17:26.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:17:26.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:17:26.288 -07 000000618 INF: FPGA: Recv ZSGSRD 35205
17-03-17 18:17:26.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:17:26.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:17:26.298 -07 000000482 INF: FPGA: Recv ZSGSRD 35204
17-03-17 18:17:26.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:17:26.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:17:26.308 -07 000000618 INF: FPGA: Recv ZSGSRD 35215
17-03-17 18:17:26.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:17:26.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:17:26.318 -07 000000502 INF: FPGA: Recv ZSGSRD 35207
17-03-17 18:17:26.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:17:26.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:17:26.328 -07 000000502 INF: FPGA: Recv ZSGSRD 35208
17-03-17 18:17:26.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:17:26.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:17:26.338 -07 000000478 INF: FPGA: Recv ZSGSRD 35212
17-03-17 18:17:26.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:17:26.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:17:26.348 -07 000000618 INF: FPGA: Recv ZSGSRD 35209
17-03-17 18:17:26.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:17:26.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:17:26.358 -07 000000502 INF: FPGA: Recv ZSGSRD 35207
17-03-17 18:17:26.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:17:26.368 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:17:26.368 -07 000000502 INF: FPGA: Recv ZPIEZORD 30965
17-03-17 18:17:26.378 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:17:26.378 -07 000000610 INF: Z Motor: Piezo is near 46.1 V (nominally 0 to 100 V), expect near 55.5 V, since DAC is at 5.550 V. Piezo Error = -9.3 V.
17-03-17 18:17:26.378 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.5 um, Read 10 ADC samples: Avg = 35208 (-165.6 uncal um), Error = 0.9 uncal um, Median = 35208 (-165.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35204 (-165.6 uncal um), Max = 35215 (-165.7 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 18:17:26.378 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35208, posNoise = 7, negNoise = 4
17-03-17 18:17:26.378 -07 000000610 INF: Z Motor: After move to -0.166491, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:17:26.378 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 18:17:26.378 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:17:26.378 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:17:26.378 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:17:26.378 -07 000000448 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:17:26.378 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:17:26.378 -07 000000433 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:17:26.388 -07 000000431 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:17:26.388 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:17:26.388 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:17:26.388 -07 000000448 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:17:26.388 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 18:17:26.388 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:17:26.388 -07 000000448 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 18:17:26.388 -07 000000448 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:17:26.388 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 18:17:26.388 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:17:26.398 -07 000000448 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 18:17:26.398 -07 000000448 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 17 ms.
17-03-17 18:17:26.398 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 18:17:26.398 -07 000000431 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 18 ms.
17-03-17 18:17:26.398 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 392 392 188 188 36547 150\n [Camera]
17-03-17 18:17:26.578 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:17:26.578 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 10. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=93, R2=102, Total=195. Warn if over 250 bubbles per interval.
17-03-17 18:17:26.598 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:17:26.988 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 584
17-03-17 18:17:26.988 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 584
17-03-17 18:17:26.988 -07 000000433 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:17:26.988 -07 000000433 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:17:26.988 -07 000000433 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 18:17:26.998 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 584
17-03-17 18:17:26.998 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 584
17-03-17 18:17:26.998 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:17:26.998 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:17:26.998 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-17 18:17:27.188 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36547 777
17-03-17 18:17:27.338 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP turning grn on 927
17-03-17 18:17:27.368 -07 000000433 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 18:17:27.368 -07 000000433 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 18:17:27.368 -07 000000433 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:17:27.368 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 18:17:27.368 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 18:17:27.368 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:17:27.378 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 18:17:27.378 -07 000000433 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 18:17:27.378 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 18:17:27.388 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 18:17:27.518 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1115
17-03-17 18:17:27.518 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1115
17-03-17 18:17:27.528 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:17:27.528 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:17:27.528 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-17 18:17:27.528 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1115
17-03-17 18:17:27.528 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1115
17-03-17 18:17:27.528 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:17:27.528 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:17:27.528 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 18:17:27.718 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP 1307
17-03-17 18:17:27.718 -07 000000502 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:17:27.718 -07 000000610 INF: FPGA: 'CAMDBLSNAP 392 392 188 188 36547 150' command took 2 ms to send, 1311 ms to get response, and 1314 ms overall
17-03-17 18:17:27.718 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 18:17:27.718 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 18 at Y-position 73.1767578125, Z-Position -0.166507013098255. ------
17-03-17 18:17:27.718 -07 000000478 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:17:27.718 -07 000000618 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.0226 mm, moving Z to -0.17286 mm
17-03-17 18:17:27.718 -07 000000618 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:17:27.718 -07 000000502 INF: Y Motor: Entering MoveAbsStepped (target = 118436 steps, sync = True, waitForSettling = True)
17-03-17 18:17:27.718 -07 000000502 INF: Y Motor: Moving to 74.0226 mm, started at 73.1768 mm, delta = 0.8458 mm
17-03-17 18:17:27.718 -07 000000482 INF: Z Motor: Entering MoveAbsStepped (DAC = 37762, sync = True, waitForSettling = False)
17-03-17 18:17:27.718 -07 000000482 INF: Z Motor: Moving to -0.172863 mm, started at -0.166507 mm, distance = -6.36 um
17-03-17 18:17:27.718 -07 000000512 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:17:27.728 -07 000000478 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:17:27.728 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:17:27.838 -07 000000478 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:17:27.838 -07 000000424 INF: FPGA: Recv YRDPOS 149866
17-03-17 18:17:27.838 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 118 ms overall
17-03-17 18:17:27.838 -07 000000502 INF: Y Motor: Encoder = 149866 = motor step 117082.8 = 73.1768 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:17:27.838 -07 000000502 INF: Y Motor: Last commanded position = 73.1926 mm (117108.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:17:27.838 -07 000000502 INF: Y Motor: Moving 1353 steps-32
17-03-17 18:17:27.848 -07 000000502 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:17:27.858 -07 000000482 INF: FPGA: Xmit ZDACW 37762\n [Z Motor]
17-03-17 18:17:27.858 -07 000000512 INF: FPGA: Recv ZDACW
17-03-17 18:17:27.868 -07 000000482 INF: FPGA: 'ZDACW 37762' command took 0 ms to send, 0 ms to get response, and 141 ms overall
17-03-17 18:17:27.868 -07 000000482 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:17:27.868 -07 000000424 INF: FPGA: Recv ZDACR 37762
17-03-17 18:17:27.878 -07 000000482 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:17:27.878 -07 000000482 INF: Z Motor: MoveAbsStepped took 151 ms (did NOT wait for settling yet))
17-03-17 18:17:27.908 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 384 ms.
17-03-17 18:17:27.908 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 18:17:27.908 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:17:27.908 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 383 ms.
17-03-17 18:17:27.908 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 383 ms.
17-03-17 18:17:27.908 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:17:27.918 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:17:27.918 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-17 18:17:27.918 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-17 18:17:27.918 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 18:17:28.038 -07 000000541 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:17:28.038 -07 000000478 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 199 ms to get response, and 318 ms overall
17-03-17 18:17:28.218 -07 000000626 INF: FPGA: Recv YMVTILE
17-03-17 18:17:28.218 -07 000000502 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 380 ms overall
17-03-17 18:17:28.248 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:17:28.248 -07 000000626 INF: FPGA: Recv YRDPOS 151570
17-03-17 18:17:28.258 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 18:17:28.258 -07 000000502 INF: Y Motor: Encoder = 151570 = motor step 118414.1 = 74.0088 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:17:28.258 -07 000000502 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 18:17:28.258 -07 000000502 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 381 ms, distance = 0.846 mm, average velocity = 2.220 mm/sec
17-03-17 18:17:28.408 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 11, FrontChillerTemperature: 4.005817,
17-03-17 18:17:29.208 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:17:29.208 -07 000000626 INF: FPGA: Recv YRDPOS 151570
17-03-17 18:17:29.218 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:17:29.218 -07 000000502 INF: Y Motor: Encoder = 151570 = motor step 118414.1 = 74.0088 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:17:29.228 -07 000000502 INF: Y Motor: After move to 74.022606, error = -0.013817, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:17:29.228 -07 000000502 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:17:29.228 -07 000000502 INF: Y Motor: Moved to 74.0088 after 1508 ms (table move)
17-03-17 18:17:29.238 -07 000000618 INF: Z Motor: EndOfMoveAbsStepped: target = -0.172863 mm (DAC = 37762)
17-03-17 18:17:29.238 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:17:29.238 -07 000000502 INF: FPGA: Recv ZSGSRD 36200
17-03-17 18:17:29.248 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:17:29.248 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:17:29.248 -07 000000502 INF: FPGA: Recv ZSGSRD 36199
17-03-17 18:17:29.258 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:17:29.258 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:17:29.258 -07 000000502 INF: FPGA: Recv ZSGSRD 36193
17-03-17 18:17:29.268 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:17:29.268 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:17:29.268 -07 000000626 INF: FPGA: Recv ZSGSRD 36197
17-03-17 18:17:29.278 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:17:29.278 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:17:29.278 -07 000000502 INF: FPGA: Recv ZSGSRD 36197
17-03-17 18:17:29.288 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:17:29.288 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:17:29.288 -07 000000433 INF: FPGA: Recv ZSGSRD 36203
17-03-17 18:17:29.298 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:17:29.298 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:17:29.298 -07 000000433 INF: FPGA: Recv ZSGSRD 36201
17-03-17 18:17:29.308 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:17:29.308 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:17:29.308 -07 000000502 INF: FPGA: Recv ZSGSRD 36196
17-03-17 18:17:29.318 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:17:29.318 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:17:29.318 -07 000000502 INF: FPGA: Recv ZSGSRD 36200
17-03-17 18:17:29.328 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:17:29.328 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:17:29.328 -07 000000502 INF: FPGA: Recv ZSGSRD 36199
17-03-17 18:17:29.338 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:17:29.338 -07 000000618 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:17:29.338 -07 000000502 INF: FPGA: Recv ZPIEZORD 32236
17-03-17 18:17:29.348 -07 000000618 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:17:29.348 -07 000000618 INF: Z Motor: Piezo is near 48.9 V (nominally 0 to 100 V), expect near 57.6 V, since DAC is at 5.762 V. Piezo Error = -8.8 V.
17-03-17 18:17:29.348 -07 000000618 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.9 um, Read 10 ADC samples: Avg = 36198 (-172.0 uncal um), Error = 0.9 uncal um, Median = 36199 (-172.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 36193 (-172.0 uncal um), Max = 36203 (-172.0 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 18:17:29.348 -07 000000618 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36198, posNoise = 5, negNoise = 5
17-03-17 18:17:29.348 -07 000000618 INF: Z Motor: After move to -0.172863, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:17:29.348 -07 000000618 INF: Z Motor: Settle wait time = 1514 ms, measure time = 107 ms (allowed 150 ms), total time = 1621 ms
17-03-17 18:17:29.348 -07 000000618 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-17 18:17:29.398 -07 000000618 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1673 ms
17-03-17 18:17:29.398 -07 000000618 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:17:29.398 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:17:29.398 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:17:29.398 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:17:29.398 -07 000000433 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:17:29.398 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:17:29.398 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:17:29.398 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:17:29.398 -07 000000433 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:17:29.408 -07 000000433 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:17:29.408 -07 000000433 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:17:29.418 -07 000000433 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-17 18:17:29.418 -07 000000433 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 18:17:29.418 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:17:29.468 -07 000000502 INF: FPGA: Recv @CAMSNAP turning led on 42
17-03-17 18:17:29.668 -07 000000433 INF: FPGA: Recv @CAMSNAP img rdy 242
17-03-17 18:17:29.668 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 242
17-03-17 18:17:29.668 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:17:29.698 -07 000000502 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:17:29.708 -07 000000618 INF: FPGA: Recv CAMSNAP
17-03-17 18:17:29.708 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 280 ms to get response, and 284 ms overall
17-03-17 18:17:31.068 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-17 18:17:31.198 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 125 ms.
17-03-17 18:17:31.198 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:17:31.198 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 18:17:31.198 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 1530 ms.
17-03-17 18:17:31.208 -07 000000433 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:17:31.208 -07 000000502 INF: Autofocus start
17-03-17 18:17:31.208 -07 000000502 INF: MeasureProfile start
17-03-17 18:17:31.208 -07 000000626 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:17:31.218 -07 000000433 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:17:31.218 -07 000000433 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:17:31.218 -07 000000502 INF: MeasureProfile done
17-03-17 18:17:31.218 -07 000000502 INF: X=-16  Z correction [um]=-0.1496812
17-03-17 18:17:31.218 -07 000000502 INF: Autofocus finished
17-03-17 18:17:31.418 -07 000000502 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:17:31.418 -07 000000433 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:17:31.418 -07 000000610 INF: ------------ Scan Snapping tile 18 at Y-position 74.0087890625, Z-position -0.172866983118598. ----------
17-03-17 18:17:31.418 -07 000000610 INF: Cycle	11	Tile	18	Exposure Settings		A	392	G	188	T	188	C	392
17-03-17 18:17:31.428 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36242, sync = True, waitForSettling = True)
17-03-17 18:17:31.428 -07 000000610 INF: Z Motor: Moving to -0.165905 mm, started at -0.172867 mm, distance = 6.96 um
17-03-17 18:17:31.428 -07 000000610 INF: FPGA: Xmit ZDACW 36242\n [Z Motor]
17-03-17 18:17:31.428 -07 000000433 INF: FPGA: Recv ZDACW
17-03-17 18:17:31.438 -07 000000610 INF: FPGA: 'ZDACW 36242' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:17:31.438 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:17:31.438 -07 000000431 INF: FPGA: Recv ZDACR 36242
17-03-17 18:17:31.448 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:17:31.448 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:17:31.578 -07 000000459 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:17:31.578 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 10. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=93, R2=102, Total=195. Warn if over 250 bubbles per interval.
17-03-17 18:17:31.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:17:31.598 -07 000000502 INF: FPGA: Recv ZSGSRD 35118
17-03-17 18:17:31.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:17:31.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:17:31.608 -07 000000626 INF: FPGA: Recv ZSGSRD 35119
17-03-17 18:17:31.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:17:31.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:17:31.618 -07 000000415 INF: FPGA: Recv ZSGSRD 35114
17-03-17 18:17:31.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:17:31.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:17:31.628 -07 000000626 INF: FPGA: Recv ZSGSRD 35114
17-03-17 18:17:31.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:17:31.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:17:31.638 -07 000000431 INF: FPGA: Recv ZSGSRD 35118
17-03-17 18:17:31.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:17:31.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:17:31.648 -07 000000626 INF: FPGA: Recv ZSGSRD 35118
17-03-17 18:17:31.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:17:31.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:17:31.658 -07 000000618 INF: FPGA: Recv ZSGSRD 35118
17-03-17 18:17:31.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:17:31.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:17:31.668 -07 000000626 INF: FPGA: Recv ZSGSRD 35118
17-03-17 18:17:31.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:17:31.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:17:31.678 -07 000000415 INF: FPGA: Recv ZSGSRD 35118
17-03-17 18:17:31.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:17:31.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:17:31.688 -07 000000626 INF: FPGA: Recv ZSGSRD 35114
17-03-17 18:17:31.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:17:31.698 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:17:31.698 -07 000000415 INF: FPGA: Recv ZPIEZORD 30822
17-03-17 18:17:31.708 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:17:31.708 -07 000000610 INF: Z Motor: Piezo is near 45.8 V (nominally 0 to 100 V), expect near 55.3 V, since DAC is at 5.530 V. Piezo Error = -9.5 V.
17-03-17 18:17:31.708 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -165.9 um, Read 10 ADC samples: Avg = 35117 (-165.1 uncal um), Error = 0.8 uncal um, Median = 35118 (-165.1 uncal um), StdDev = 2 (0.0 uncal um), Range = 5 (0.0 uncal um), Min = 35114 (-165.0 uncal um), Max = 35119 (-165.1 uncal um), Pos Noise = 2 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 18:17:31.708 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35117, posNoise = 2, negNoise = 3
17-03-17 18:17:31.708 -07 000000610 INF: Z Motor: After move to -0.165905, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:17:31.708 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 18:17:31.708 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:17:31.708 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:17:31.708 -07 000000433 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:17:31.708 -07 000000415 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:17:31.708 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:17:31.708 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:17:31.708 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:17:31.708 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:17:31.708 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 18:17:31.708 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:17:31.708 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:17:31.708 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:17:31.718 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 18:17:31.718 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:17:31.718 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 18:17:31.718 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:17:31.728 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 18:17:31.728 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 18:17:31.728 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 18:17:31.728 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 18:17:31.738 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 392 392 188 188 36419 150\n [Camera]
17-03-17 18:17:31.928 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:17:32.328 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 584
17-03-17 18:17:32.328 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 584
17-03-17 18:17:32.328 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:17:32.328 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 584
17-03-17 18:17:32.328 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:17:32.328 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 584
17-03-17 18:17:32.328 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-17 18:17:32.328 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:17:32.338 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:17:32.338 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 1055068208, 0x0, 418435064) start.
17-03-17 18:17:32.518 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36419 777
17-03-17 18:17:32.668 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning grn on 927
17-03-17 18:17:32.718 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 392 ms.
17-03-17 18:17:32.728 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-17 18:17:32.728 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:17:32.728 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 1055068208, 0x0, 418435064) end. Duration was 390 ms.
17-03-17 18:17:32.728 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 18:17:32.728 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:17:32.728 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:17:32.728 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 18:17:32.728 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:17:32.738 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-17 18:17:32.858 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1115
17-03-17 18:17:32.858 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1115
17-03-17 18:17:32.858 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:17:32.858 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1115
17-03-17 18:17:32.858 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1115
17-03-17 18:17:32.858 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:17:32.868 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:17:32.868 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 1090490472, 0x0, 391868352) start.
17-03-17 18:17:32.868 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:17:32.868 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1125912736, 0x0, 418435064) start.
17-03-17 18:17:33.048 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP 1307
17-03-17 18:17:33.048 -07 000000569 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:17:33.048 -07 000000610 INF: FPGA: 'CAMDBLSNAP 392 392 188 188 36419 150' command took 2 ms to send, 1304 ms to get response, and 1314 ms overall
17-03-17 18:17:33.048 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 18:17:33.048 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 19 at Y-position 74.0087890625, Z-Position -0.165922409793354. ------
17-03-17 18:17:33.048 -07 000000459 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:17:33.048 -07 000000415 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.8526 mm, moving Z to -0.17225 mm
17-03-17 18:17:33.048 -07 000000415 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:17:33.168 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:17:33.168 -07 000000459 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 114 ms overall
17-03-17 18:17:33.168 -07 000000459 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:17:33.168 -07 000000569 INF: Y Motor: Entering MoveAbsStepped (target = 119764 steps, sync = True, waitForSettling = True)
17-03-17 18:17:33.168 -07 000000569 INF: Y Motor: Moving to 74.8526 mm, started at 74.0088 mm, delta = 0.8438 mm
17-03-17 18:17:33.168 -07 000000618 INF: Z Motor: Entering MoveAbsStepped (DAC = 37629, sync = True, waitForSettling = False)
17-03-17 18:17:33.168 -07 000000618 INF: Z Motor: Moving to -0.172255 mm, started at -0.165922 mm, distance = -6.33 um
17-03-17 18:17:33.178 -07 000000618 INF: FPGA: Xmit ZDACW 37629\n [Z Motor]
17-03-17 18:17:33.178 -07 000000433 INF: FPGA: Recv ZDACW
17-03-17 18:17:33.188 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:17:33.188 -07 000000618 INF: FPGA: 'ZDACW 37629' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-17 18:17:33.188 -07 000000382 INF: FPGA: Recv YRDPOS 151570
17-03-17 18:17:33.198 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-17 18:17:33.198 -07 000000569 INF: Y Motor: Encoder = 151570 = motor step 118414.1 = 74.0088 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:17:33.198 -07 000000569 INF: Y Motor: Last commanded position = 74.0226 mm (118436.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:17:33.198 -07 000000569 INF: Y Motor: Moving 1350 steps-28
17-03-17 18:17:33.198 -07 000000618 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:17:33.198 -07 000000627 INF: FPGA: Recv ZDACR 37629
17-03-17 18:17:33.208 -07 000000618 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 18:17:33.208 -07 000000618 INF: Z Motor: MoveAbsStepped took 33 ms (did NOT wait for settling yet))
17-03-17 18:17:33.208 -07 000000569 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:17:33.248 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1125912736, 0x0, 418435064) end. Duration was 382 ms.
17-03-17 18:17:33.248 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 383 ms.
17-03-17 18:17:33.248 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:17:33.248 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:17:33.258 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 1090490472, 0x0, 391868352) end. Duration was 393 ms.
17-03-17 18:17:33.258 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-17 18:17:33.258 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:17:33.258 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-17 18:17:33.258 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:17:33.258 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-17 18:17:33.368 -07 000000627 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:17:33.368 -07 000000459 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 196 ms to get response, and 202 ms overall
17-03-17 18:17:33.578 -07 000000627 INF: FPGA: Recv YMVTILE
17-03-17 18:17:33.578 -07 000000569 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-17 18:17:33.598 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:17:33.608 -07 000000459 INF: FPGA: Recv YRDPOS 153257
17-03-17 18:17:33.608 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 18:17:33.608 -07 000000569 INF: Y Motor: Encoder = 153257 = motor step 119732.0 = 74.8325 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:17:33.608 -07 000000569 INF: Y Motor: Position error before settling (table move) = -41 encoder counts (-0.020 mm)
17-03-17 18:17:33.608 -07 000000569 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.844 mm, average velocity = 2.175 mm/sec
17-03-17 18:17:33.768 -07 000000448 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 11, FrontChillerTemperature: 3.990831,
17-03-17 18:17:34.558 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:17:34.558 -07 000000618 INF: FPGA: Recv YRDPOS 153257
17-03-17 18:17:34.568 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:17:34.568 -07 000000569 INF: Y Motor: Encoder = 153257 = motor step 119732.0 = 74.8325 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:17:34.578 -07 000000569 INF: Y Motor: After move to 74.852608, error = -0.020088, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:17:34.578 -07 000000569 INF: Y Motor: Position error after settling (table move) = -41 encoder counts (-0.020 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:17:34.578 -07 000000569 INF: Y Motor: Moved to 74.8325 after 1408 ms (table move)
17-03-17 18:17:34.578 -07 000000415 INF: Z Motor: EndOfMoveAbsStepped: target = -0.172255 mm (DAC = 37629)
17-03-17 18:17:34.578 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:17:34.588 -07 000000561 INF: FPGA: Recv ZSGSRD 36103
17-03-17 18:17:34.588 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 18:17:34.588 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:17:34.588 -07 000000502 INF: FPGA: Recv ZSGSRD 36115
17-03-17 18:17:34.598 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:17:34.598 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:17:34.598 -07 000000459 INF: FPGA: Recv ZSGSRD 36102
17-03-17 18:17:34.608 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:17:34.608 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:17:34.608 -07 000000561 INF: FPGA: Recv ZSGSRD 36100
17-03-17 18:17:34.618 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:17:34.618 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:17:34.618 -07 000000433 INF: FPGA: Recv ZSGSRD 36105
17-03-17 18:17:34.628 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:17:34.628 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:17:35.288 -07 000000618 INF: FPGA: Recv ZSGSRD 36100
17-03-17 18:17:35.288 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 650 ms to get response, and 660 ms overall
17-03-17 18:17:35.288 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:17:35.288 -07 000000618 INF: FPGA: Recv ZSGSRD 36108
17-03-17 18:17:35.298 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:17:35.298 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:17:35.298 -07 000000618 INF: FPGA: Recv ZSGSRD 36106
17-03-17 18:17:35.308 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:17:35.308 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:17:35.308 -07 000000618 INF: FPGA: Recv ZSGSRD 36104
17-03-17 18:17:35.318 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:17:35.318 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:17:35.318 -07 000000618 INF: FPGA: Recv ZSGSRD 36103
17-03-17 18:17:35.328 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:17:35.328 -07 000000415 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:17:35.328 -07 000000618 INF: FPGA: Recv ZPIEZORD 32171
17-03-17 18:17:35.338 -07 000000415 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:17:35.338 -07 000000415 INF: Z Motor: Piezo is near 48.7 V (nominally 0 to 100 V), expect near 57.4 V, since DAC is at 5.742 V. Piezo Error = -8.7 V.
17-03-17 18:17:35.338 -07 000000415 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.3 um, Read 10 ADC samples: Avg = 36105 (-171.4 uncal um), Error = 0.9 uncal um, Median = 36104 (-171.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 36100 (-171.4 uncal um), Max = 36115 (-171.5 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 18:17:35.338 -07 000000415 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36105, posNoise = 10, negNoise = 5
17-03-17 18:17:35.338 -07 000000415 INF: Z Motor: After move to -0.172255, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:17:35.338 -07 000000415 INF: Z Motor: Settle wait time = 1411 ms, measure time = 753 ms (allowed 150 ms), total time = 2164 ms
17-03-17 18:17:35.338 -07 000000415 INF: Z Motor: Warning: Actual position measuring time = 753 ms, longer than max expected time of 150 ms
17-03-17 18:17:35.338 -07 000000415 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2281 ms
17-03-17 18:17:35.338 -07 000000415 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:17:35.338 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:17:35.338 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:17:35.338 -07 000000415 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:17:35.338 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:17:35.348 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:17:35.348 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:17:35.348 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:17:35.348 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:17:35.348 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 18:17:35.348 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:17:35.358 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-17 18:17:35.358 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms.
17-03-17 18:17:35.368 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:17:35.408 -07 000000618 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:17:35.608 -07 000000415 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:17:35.608 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:17:35.608 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:17:35.648 -07 000000618 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:17:35.648 -07 000000618 INF: FPGA: Recv CAMSNAP
17-03-17 18:17:35.648 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 276 ms to get response, and 285 ms overall
17-03-17 18:17:36.578 -07 000000618 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:17:37.198 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-17 18:17:37.328 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 124 ms.
17-03-17 18:17:37.328 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:17:37.328 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 18:17:37.328 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 1714 ms.
17-03-17 18:17:38.608 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 10. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=93, R2=102, Total=195. Warn if over 250 bubbles per interval.
17-03-17 18:17:38.648 -07 000000618 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:17:38.648 -07 000000431 INF: Autofocus start
17-03-17 18:17:38.648 -07 000000431 INF: MeasureProfile start
17-03-17 18:17:38.648 -07 000000415 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:17:38.658 -07 000000618 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:17:38.658 -07 000000618 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:17:38.658 -07 000000431 INF: MeasureProfile done
17-03-17 18:17:38.658 -07 000000431 INF: X=16  Z correction [um]=0.01042744
17-03-17 18:17:38.658 -07 000000431 INF: Autofocus finished
17-03-17 18:17:38.858 -07 000000512 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:17:38.858 -07 000000618 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:17:38.858 -07 000000610 INF: ------------ Scan Snapping tile 19 at Y-position 74.83251953125, Z-position -0.172269531389414. ----------
17-03-17 18:17:38.868 -07 000000610 INF: Cycle	11	Tile	19	Exposure Settings		A	392	G	188	T	188	C	392
17-03-17 18:17:38.868 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36144, sync = True, waitForSettling = True)
17-03-17 18:17:38.868 -07 000000610 INF: Z Motor: Moving to -0.165457 mm, started at -0.172270 mm, distance = 6.81 um
17-03-17 18:17:38.868 -07 000000610 INF: FPGA: Xmit ZDACW 36144\n [Z Motor]
17-03-17 18:17:38.868 -07 000000512 INF: FPGA: Recv ZDACW
17-03-17 18:17:38.878 -07 000000610 INF: FPGA: 'ZDACW 36144' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:17:38.878 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:17:38.878 -07 000000431 INF: FPGA: Recv ZDACR 36144
17-03-17 18:17:38.888 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:17:38.888 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:17:39.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:17:39.038 -07 000000512 INF: FPGA: Recv ZSGSRD 35045
17-03-17 18:17:39.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:17:39.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:17:39.048 -07 000000512 INF: FPGA: Recv ZSGSRD 35047
17-03-17 18:17:39.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:17:39.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:17:39.058 -07 000000431 INF: FPGA: Recv ZSGSRD 35040
17-03-17 18:17:39.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:17:39.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:17:39.068 -07 000000431 INF: FPGA: Recv ZSGSRD 35049
17-03-17 18:17:39.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:17:39.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:17:39.078 -07 000000512 INF: FPGA: Recv ZSGSRD 35048
17-03-17 18:17:39.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:17:39.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:17:39.088 -07 000000431 INF: FPGA: Recv ZSGSRD 35045
17-03-17 18:17:39.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:17:39.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:17:39.098 -07 000000512 INF: FPGA: Recv ZSGSRD 35044
17-03-17 18:17:39.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:17:39.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:17:39.108 -07 000000618 INF: FPGA: Recv ZSGSRD 35048
17-03-17 18:17:39.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:17:39.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:17:39.128 -07 000000431 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 11, FrontChillerTemperature: 3.945808,
17-03-17 18:17:39.128 -07 000000512 INF: FPGA: Recv ZSGSRD 35047
17-03-17 18:17:39.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 18:17:39.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:17:39.148 -07 000000415 INF: FPGA: Recv ZSGSRD 35045
17-03-17 18:17:39.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 18:17:39.158 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:17:39.158 -07 000000415 INF: FPGA: Recv ZPIEZORD 30769
17-03-17 18:17:39.168 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:17:39.168 -07 000000610 INF: Z Motor: Piezo is near 45.7 V (nominally 0 to 100 V), expect near 55.2 V, since DAC is at 5.515 V. Piezo Error = -9.4 V.
17-03-17 18:17:39.168 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -165.5 um, Read 10 ADC samples: Avg = 35046 (-164.6 uncal um), Error = 0.9 uncal um, Median = 35046 (-164.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35040 (-164.6 uncal um), Max = 35049 (-164.6 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 18:17:39.168 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35046, posNoise = 3, negNoise = 6
17-03-17 18:17:39.168 -07 000000610 INF: Z Motor: After move to -0.165457, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:17:39.168 -07 000000610 INF: Z Motor: MoveAbsStepped took 300 ms)
17-03-17 18:17:39.168 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:17:39.168 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:17:39.168 -07 000000431 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:17:39.168 -07 000000415 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:17:39.168 -07 000000448 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:17:39.168 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:17:39.168 -07 000000429 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:17:39.168 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:17:39.168 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:17:39.168 -07 000000448 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:17:39.168 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:17:39.168 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:17:39.178 -07 000000448 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 18:17:39.178 -07 000000448 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:17:39.178 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 18:17:39.178 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:17:39.188 -07 000000448 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 13 ms.
17-03-17 18:17:39.188 -07 000000448 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 18 ms.
17-03-17 18:17:39.188 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms.
17-03-17 18:17:39.188 -07 000000429 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 19 ms.
17-03-17 18:17:39.198 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 392 392 188 188 36320 150\n [Camera]
17-03-17 18:17:39.398 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:17:39.788 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 584
17-03-17 18:17:39.788 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 584
17-03-17 18:17:39.788 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:17:39.788 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 584
17-03-17 18:17:39.788 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 584
17-03-17 18:17:39.788 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:17:39.788 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:17:39.788 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-17 18:17:39.798 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:17:39.798 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 1055068208, 0x0, 418435064) start.
17-03-17 18:17:39.978 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36320 777
17-03-17 18:17:40.128 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning grn on 927
17-03-17 18:17:40.188 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 392 ms.
17-03-17 18:17:40.188 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-17 18:17:40.188 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:17:40.188 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:17:40.188 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 18:17:40.198 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 1055068208, 0x0, 418435064) end. Duration was 397 ms.
17-03-17 18:17:40.198 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-17 18:17:40.198 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:17:40.198 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:17:40.208 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 416 ms.
17-03-17 18:17:40.318 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1115
17-03-17 18:17:40.318 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1115
17-03-17 18:17:40.318 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:17:40.318 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:17:40.318 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 18:17:40.318 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1115
17-03-17 18:17:40.318 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1115
17-03-17 18:17:40.318 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:17:40.318 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:17:40.318 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 2485095640, 0x0, 418435064) start.
17-03-17 18:17:40.508 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP 1307
17-03-17 18:17:40.508 -07 000000618 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:17:40.508 -07 000000610 INF: FPGA: 'CAMDBLSNAP 392 392 188 188 36320 150' command took 2 ms to send, 1306 ms to get response, and 1317 ms overall
17-03-17 18:17:40.728 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 405 ms.
17-03-17 18:17:40.728 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-17 18:17:40.728 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:17:40.728 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 2485095640, 0x0, 418435064) end. Duration was 407 ms.
17-03-17 18:17:40.728 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 408 ms.
17-03-17 18:17:40.728 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:17:40.738 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:17:40.738 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 9 ms.
17-03-17 18:17:40.738 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 415 ms.
17-03-17 18:17:40.738 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) start.
17-03-17 18:17:40.738 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 419 ms.
17-03-17 18:17:40.778 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) end. Duration was 42 ms.
17-03-17 18:17:40.778 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) start.
17-03-17 18:17:40.818 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) end. Duration was 42 ms.
17-03-17 18:17:40.818 -07 000000610 INF: Move compensator for Bottom-surface imaging.
17-03-17 18:17:40.818 -07 000000610 INF: FPGA: Xmit EMCUR 80\n [Compensator]
17-03-17 18:17:40.828 -07 000000429 INF: FPGA: Recv EMCUR 
17-03-17 18:17:40.828 -07 000000610 INF: FPGA: 'EMCUR 80' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 18:17:40.828 -07 000000610 INF: FPGA: Xmit EMIN 20 40\n [Compensator]
17-03-17 18:17:41.328 -07 000000415 INF: FPGA: Recv EMIN
17-03-17 18:17:41.328 -07 000000610 INF: FPGA: 'EMIN 20 40' command took 0 ms to send, 493 ms to get response, and 502 ms overall
17-03-17 18:17:41.328 -07 000000610 INF: FPGA: Xmit EMCUR 60\n [Compensator]
17-03-17 18:17:41.328 -07 000000459 INF: FPGA: Recv EMCUR 
17-03-17 18:17:41.338 -07 000000610 INF: FPGA: 'EMCUR 60' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 18:17:41.338 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 18:17:41.338 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 1 at Y-position 74.83251953125, Z-Position -0.165466290731289. ------
17-03-17 18:17:41.338 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:17:41.338 -07 000000448 INF: Y Motor: MoveYZ optimized starting. Moving Y to 59.9126 mm, moving Z to -0.14009 mm
17-03-17 18:17:41.338 -07 000000448 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:17:41.338 -07 000000459 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True)
17-03-17 18:17:41.338 -07 000000459 INF: Y Motor: Moving to 59.9126 mm, started at 74.8325 mm, delta = -14.9199 mm
17-03-17 18:17:41.338 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:17:41.348 -07 000000459 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:17:41.348 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 18:17:41.348 -07 000000429 INF: Z Motor: Entering MoveAbsStepped (DAC = 30602, sync = True, waitForSettling = False)
17-03-17 18:17:41.348 -07 000000429 INF: Z Motor: Moving to -0.140087 mm, started at -0.165466 mm, distance = 25.38 um
17-03-17 18:17:41.348 -07 000000618 INF: FPGA: Recv YRDPOS 153259
17-03-17 18:17:41.358 -07 000000459 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-17 18:17:41.358 -07 000000459 INF: Y Motor: Encoder = 153259 = motor step 119733.6 = 74.8335 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:17:41.358 -07 000000429 INF: FPGA: Xmit ZDACW 30602\n [Z Motor]
17-03-17 18:17:41.358 -07 000000486 INF: FPGA: Recv ZDACW
17-03-17 18:17:41.358 -07 000000459 INF: Y Motor: Last commanded position = 74.8526 mm (119764.2 steps), delta from last commanded position = -14.9400 mm (-23904.0 steps). UsingTableMove = False
17-03-17 18:17:41.358 -07 000000459 INF: Y Motor: Moving to 122701 encoder counts
17-03-17 18:17:41.368 -07 000000512 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:17:41.368 -07 000000429 INF: FPGA: 'ZDACW 30602' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-17 18:17:41.378 -07 000000459 INF: FPGA: Xmit YMVTO 122701\n [Y Motor]
17-03-17 18:17:41.388 -07 000000429 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:17:41.388 -07 000000415 INF: FPGA: Recv ZDACR 30602
17-03-17 18:17:41.398 -07 000000429 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:17:41.398 -07 000000429 INF: Z Motor: MoveAbsStepped took 49 ms (did NOT wait for settling yet))
17-03-17 18:17:41.568 -07 000000429 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:17:41.568 -07 000000512 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 195 ms to get response, and 223 ms overall
17-03-17 18:17:41.578 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:17:41.578 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 10. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=93, R2=102, Total=195. Warn if over 250 bubbles per interval.
17-03-17 18:17:42.998 -07 000000541 INF: FPGA: Recv YMVTO 122702 23904
17-03-17 18:17:42.998 -07 000000459 INF: FPGA: 'YMVTO 122701' command took 0 ms to send, 1618 ms to get response, and 1645 ms overall
17-03-17 18:17:42.998 -07 000000459 INF: Y Motor: Position error before settling = 1 encoder counts (0.000 mm)
17-03-17 18:17:42.998 -07 000000459 INF: Y Motor: To move from 74.833 to 59.913 (-14.920 mm) should take 23873 steps, but required 23904 steps (14.940 mm). Slippage = 0.019 mm (0.00%).
17-03-17 18:17:42.998 -07 000000459 INF: Y Motor: FPGA move command 'YMVTO 122701' took 1645 ms, distance = 14.920 mm, average velocity = 9.070 mm/sec
17-03-17 18:17:44.518 -07 000000618 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 11, FrontChillerTemperature: 3.964938,
17-03-17 18:17:45.848 -07 000000459 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:17:45.848 -07 000000502 INF: FPGA: Recv YRDPOS 122699
17-03-17 18:17:45.858 -07 000000459 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:17:45.858 -07 000000459 INF: Y Motor: Encoder = 122699 = motor step 95858.6 = 59.9116 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:17:45.878 -07 000000459 INF: Y Motor: After move to 59.912609, error = -0.000988, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:17:45.878 -07 000000459 INF: Y Motor: Position error after settling = -2 encoder counts (-0.001 mm), Delta during settling = -3 counts (-0.001 mm)
17-03-17 18:17:45.878 -07 000000459 INF: Y Motor: Moved to 59.9116 after 4540 ms
17-03-17 18:17:45.888 -07 000000448 INF: Z Motor: EndOfMoveAbsStepped: target = -0.140087 mm (DAC = 30602)
17-03-17 18:17:45.888 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:17:45.888 -07 000000502 INF: FPGA: Recv ZSGSRD 31097
17-03-17 18:17:45.898 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:17:45.898 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:17:45.898 -07 000000459 INF: FPGA: Recv ZSGSRD 31102
17-03-17 18:17:45.908 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:17:45.908 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:17:45.908 -07 000000459 INF: FPGA: Recv ZSGSRD 31095
17-03-17 18:17:45.918 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:17:45.918 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:17:45.918 -07 000000431 INF: FPGA: Recv ZSGSRD 31095
17-03-17 18:17:45.928 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:17:45.928 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:17:45.928 -07 000000459 INF: FPGA: Recv ZSGSRD 31099
17-03-17 18:17:45.938 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:17:45.938 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:17:45.938 -07 000000502 INF: FPGA: Recv ZSGSRD 31092
17-03-17 18:17:45.948 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:17:45.948 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:17:45.948 -07 000000459 INF: FPGA: Recv ZSGSRD 31102
17-03-17 18:17:45.958 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:17:45.958 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:17:45.958 -07 000000431 INF: FPGA: Recv ZSGSRD 31096
17-03-17 18:17:45.968 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:17:45.968 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:17:45.968 -07 000000459 INF: FPGA: Recv ZSGSRD 31094
17-03-17 18:17:45.978 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:17:45.978 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:17:45.978 -07 000000618 INF: FPGA: Recv ZSGSRD 31102
17-03-17 18:17:45.988 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:17:45.988 -07 000000448 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:17:45.988 -07 000000431 INF: FPGA: Recv ZPIEZORD 26615
17-03-17 18:17:45.998 -07 000000448 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:17:45.998 -07 000000448 INF: Z Motor: Piezo is near 36.9 V (nominally 0 to 100 V), expect near 46.7 V, since DAC is at 4.670 V. Piezo Error = -9.8 V.
17-03-17 18:17:45.998 -07 000000448 INF: Z Motor: ReadAdcAverage: Commanded Z = -140.1 um, Read 10 ADC samples: Avg = 31097 (-139.3 uncal um), Error = 0.8 uncal um, Median = 31096 (-139.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 31092 (-139.3 uncal um), Max = 31102 (-139.3 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 18:17:45.998 -07 000000448 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 31097, posNoise = 5, negNoise = 5
17-03-17 18:17:45.998 -07 000000448 INF: Z Motor: After move to -0.140087, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:17:45.998 -07 000000448 INF: Z Motor: Settle wait time = 4539 ms, measure time = 110 ms (allowed 150 ms), total time = 4649 ms
17-03-17 18:17:46.028 -07 000000448 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-17 18:17:46.068 -07 000000448 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 4725 ms
17-03-17 18:17:46.068 -07 000000448 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:17:46.068 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:17:46.068 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:17:46.068 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:17:46.068 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:17:46.068 -07 000000459 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:17:46.068 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:17:46.078 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 18:17:46.078 -07 000000459 INF: Camera: sBCa_SetPowerMode(785074288, 1) start.
17-03-17 18:17:46.098 -07 000000459 INF: Camera: sBCa_SetPowerMode(785074288, 1) end. Duration was 24 ms.
17-03-17 18:17:46.098 -07 000000459 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:17:46.098 -07 000000459 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms.
17-03-17 18:17:46.108 -07 000000459 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:17:46.118 -07 000000459 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-17 18:17:46.118 -07 000000459 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 44 ms.
17-03-17 18:17:46.118 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:17:46.168 -07 000000448 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:17:46.368 -07 000000459 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:17:46.368 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:17:46.368 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:17:46.368 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2520517904, 0x0, 559484976) start.
17-03-17 18:17:46.398 -07 000000459 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:17:46.408 -07 000000627 INF: FPGA: Recv CAMSNAP
17-03-17 18:17:46.408 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 280 ms to get response, and 284 ms overall
17-03-17 18:17:46.488 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2520517904, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 18:17:46.488 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:17:46.498 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-17 18:17:46.498 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 18:17:46.508 -07 000000502 INF: Image SNR check: start
17-03-17 18:17:46.508 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:17:46.508 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:17:46.518 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:17:46.518 -07 000000431 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:17:46.518 -07 000000502 INF: Image SNR check: pass  [peak (Max-Min)=66.09]
17-03-17 18:17:46.518 -07 000000502 INF: Autofocus start
17-03-17 18:17:46.518 -07 000000502 INF: MeasureProfile start
17-03-17 18:17:46.538 -07 000000502 INF: MeasureProfile done
17-03-17 18:17:46.538 -07 000000502 INF: X=16  Z correction [um]=0.0530179
17-03-17 18:17:46.538 -07 000000502 INF: Autofocus finished
17-03-17 18:17:46.578 -07 000000424 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:17:46.578 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 10. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=93, R2=102, Total=195. Warn if over 250 bubbles per interval.
17-03-17 18:17:46.718 -07 000000424 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:17:46.718 -07 000000431 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:17:46.718 -07 000000610 INF: ------------ Scan Snapping tile 1 at Y-position 59.91162109375, Z-position -0.140097076983475. ----------
17-03-17 18:17:46.718 -07 000000610 INF: Cycle	11	Tile	1	Exposure Settings		A	392	G	188	T	188	C	392
17-03-17 18:17:46.718 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 29126, sync = True, waitForSettling = True)
17-03-17 18:17:46.728 -07 000000610 INF: Z Motor: Moving to -0.133330 mm, started at -0.140097 mm, distance = 6.77 um
17-03-17 18:17:46.728 -07 000000610 INF: FPGA: Xmit ZDACW 29126\n [Z Motor]
17-03-17 18:17:46.728 -07 000000424 INF: FPGA: Recv ZDACW
17-03-17 18:17:46.738 -07 000000610 INF: FPGA: 'ZDACW 29126' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:17:46.738 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:17:46.738 -07 000000433 INF: FPGA: Recv ZDACR 29126
17-03-17 18:17:46.748 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:17:46.748 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:17:46.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:17:46.898 -07 000000431 INF: FPGA: Recv ZSGSRD 30041
17-03-17 18:17:46.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:17:46.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:17:46.908 -07 000000448 INF: FPGA: Recv ZSGSRD 30042
17-03-17 18:17:46.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:17:46.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:17:46.918 -07 000000627 INF: FPGA: Recv ZSGSRD 30042
17-03-17 18:17:46.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:17:46.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:17:46.928 -07 000000431 INF: FPGA: Recv ZSGSRD 30039
17-03-17 18:17:46.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:17:46.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:17:46.938 -07 000000627 INF: FPGA: Recv ZSGSRD 30042
17-03-17 18:17:46.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:17:46.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:17:46.948 -07 000000431 INF: FPGA: Recv ZSGSRD 30049
17-03-17 18:17:46.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:17:46.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:17:46.958 -07 000000459 INF: FPGA: Recv ZSGSRD 30041
17-03-17 18:17:46.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:17:46.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:17:46.968 -07 000000448 INF: FPGA: Recv ZSGSRD 30039
17-03-17 18:17:46.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:17:46.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:17:46.978 -07 000000627 INF: FPGA: Recv ZSGSRD 30044
17-03-17 18:17:46.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:17:46.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:17:46.988 -07 000000424 INF: FPGA: Recv ZSGSRD 30044
17-03-17 18:17:46.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:17:46.998 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:17:46.998 -07 000000459 INF: FPGA: Recv ZPIEZORD 25519
17-03-17 18:17:47.008 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:17:47.008 -07 000000610 INF: Z Motor: Piezo is near 34.5 V (nominally 0 to 100 V), expect near 44.4 V, since DAC is at 4.444 V. Piezo Error = -9.9 V.
17-03-17 18:17:47.008 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.3 um, Read 10 ADC samples: Avg = 30042 (-132.5 uncal um), Error = 0.8 uncal um, Median = 30042 (-132.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 30039 (-132.5 uncal um), Max = 30049 (-132.6 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 18:17:47.008 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30042, posNoise = 7, negNoise = 3
17-03-17 18:17:47.008 -07 000000610 INF: Z Motor: After move to -0.133330, error = 0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:17:47.008 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 18:17:47.008 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:17:47.008 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:17:47.008 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:17:47.008 -07 000000431 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:17:47.008 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:17:47.008 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:17:47.008 -07 000000459 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:17:47.008 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:17:47.008 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 18:17:47.008 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:17:47.008 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:17:47.008 -07 000000459 INF: Camera: sBCa_SetPowerMode(785074704, 1) start.
17-03-17 18:17:47.008 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 18:17:47.008 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:17:47.028 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 18:17:47.028 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 18:17:47.028 -07 000000459 INF: Camera: sBCa_SetPowerMode(785074704, 1) end. Duration was 22 ms.
17-03-17 18:17:47.028 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:17:47.038 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 18:17:47.038 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:17:47.048 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 13 ms.
17-03-17 18:17:47.048 -07 000000459 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 39 ms.
17-03-17 18:17:47.048 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 392 392 188 188 29303 150\n [Camera]
17-03-17 18:17:47.248 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:17:47.638 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 584
17-03-17 18:17:47.638 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 584
17-03-17 18:17:47.648 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:17:47.648 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:17:47.648 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 18:17:47.648 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 584
17-03-17 18:17:47.648 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 584
17-03-17 18:17:47.648 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:17:47.648 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:17:47.648 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-17 18:17:47.838 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29303 777
17-03-17 18:17:47.988 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP turning grn on 927
17-03-17 18:17:48.018 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 376 ms.
17-03-17 18:17:48.018 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-17 18:17:48.018 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:17:48.028 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:17:48.028 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 386 ms.
17-03-17 18:17:48.028 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 18:17:48.028 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:17:48.028 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-17 18:17:48.038 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:17:48.038 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-17 18:17:48.168 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1115
17-03-17 18:17:48.168 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1115
17-03-17 18:17:48.178 -07 000000433 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:17:48.178 -07 000000433 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:17:48.178 -07 000000433 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-17 18:17:48.178 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1115
17-03-17 18:17:48.178 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1115
17-03-17 18:17:48.178 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:17:48.178 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:17:48.178 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 18:17:48.368 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP 1307
17-03-17 18:17:48.368 -07 000000502 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:17:48.368 -07 000000610 INF: FPGA: 'CAMDBLSNAP 392 392 188 188 29303 150' command took 2 ms to send, 1312 ms to get response, and 1314 ms overall
17-03-17 18:17:48.478 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 18:17:48.478 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 2 at Y-position 59.91162109375, Z-Position -0.133319533173918. ------
17-03-17 18:17:48.488 -07 000000618 INF: Y Motor: MoveYZ optimized starting. Moving Y to 60.7426 mm, moving Z to -0.13981 mm
17-03-17 18:17:48.488 -07 000000618 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:17:48.488 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:17:48.488 -07 000000431 INF: Y Motor: Entering MoveAbsStepped (target = 97188 steps, sync = True, waitForSettling = True)
17-03-17 18:17:48.488 -07 000000431 INF: Y Motor: Moving to 60.7426 mm, started at 59.9116 mm, delta = 0.8310 mm
17-03-17 18:17:48.488 -07 000000541 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:17:48.488 -07 000000459 INF: Z Motor: Entering MoveAbsStepped (DAC = 30541, sync = True, waitForSettling = False)
17-03-17 18:17:48.488 -07 000000459 INF: Z Motor: Moving to -0.139808 mm, started at -0.133320 mm, distance = -6.49 um
17-03-17 18:17:48.498 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:17:48.498 -07 000000459 INF: FPGA: Xmit ZDACW 30541\n [Z Motor]
17-03-17 18:17:48.498 -07 000000541 INF: FPGA: Recv ZDACW
17-03-17 18:17:48.508 -07 000000459 INF: FPGA: 'ZDACW 30541' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-17 18:17:48.508 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:17:48.508 -07 000000482 INF: FPGA: Recv YRDPOS 122699
17-03-17 18:17:48.518 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-17 18:17:48.518 -07 000000431 INF: Y Motor: Encoder = 122699 = motor step 95858.6 = 59.9116 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:17:48.518 -07 000000431 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:17:48.518 -07 000000431 INF: Y Motor: Moving 1330 steps1
17-03-17 18:17:48.518 -07 000000502 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:17:48.528 -07 000000459 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:17:48.528 -07 000000415 INF: FPGA: Recv ZDACR 30541
17-03-17 18:17:48.538 -07 000000459 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:17:48.538 -07 000000459 INF: Z Motor: MoveAbsStepped took 45 ms (did NOT wait for settling yet))
17-03-17 18:17:48.538 -07 000000431 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:17:48.578 -07 000000433 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 399 ms.
17-03-17 18:17:48.578 -07 000000433 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 18:17:48.578 -07 000000433 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:17:48.578 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 399 ms.
17-03-17 18:17:48.578 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 18:17:48.578 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:17:48.578 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:17:48.578 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 18:17:48.578 -07 000000433 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-17 18:17:48.588 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-17 18:17:48.718 -07 000000459 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:17:48.718 -07 000000502 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 193 ms to get response, and 223 ms overall
17-03-17 18:17:48.908 -07 000000415 INF: FPGA: Recv YMVTILE
17-03-17 18:17:48.908 -07 000000431 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 18:17:48.938 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:17:48.938 -07 000000482 INF: FPGA: Recv YRDPOS 124382
17-03-17 18:17:48.948 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 18:17:48.948 -07 000000431 INF: Y Motor: Encoder = 124382 = motor step 97173.4 = 60.7334 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:17:48.948 -07 000000431 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm)
17-03-17 18:17:48.948 -07 000000431 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.831 mm, average velocity = 2.088 mm/sec
17-03-17 18:17:49.898 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:17:50.248 -07 000000502 INF: FPGA: Recv YRDPOS 124382
17-03-17 18:17:50.248 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 344 ms to get response, and 354 ms overall
17-03-17 18:17:50.248 -07 000000431 INF: Y Motor: Encoder = 124382 = motor step 97173.4 = 60.7334 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:17:50.248 -07 000000502 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 11, FrontChillerTemperature: 3.963579,
17-03-17 18:17:50.278 -07 000000431 INF: Y Motor: After move to 60.742607, error = -0.009209, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:17:50.278 -07 000000431 INF: Y Motor: Position error after settling (table move) = -19 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:17:50.278 -07 000000431 INF: Y Motor: Moved to 60.7334 after 1788 ms (table move)
17-03-17 18:17:50.278 -07 000000618 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139808 mm (DAC = 30541)
17-03-17 18:17:50.288 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:17:50.288 -07 000000502 INF: FPGA: Recv ZSGSRD 31050
17-03-17 18:17:50.298 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-17 18:17:50.298 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:17:50.298 -07 000000448 INF: FPGA: Recv ZSGSRD 31058
17-03-17 18:17:50.308 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:17:50.308 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:17:50.308 -07 000000431 INF: FPGA: Recv ZSGSRD 31055
17-03-17 18:17:50.318 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:17:50.318 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:17:50.318 -07 000000502 INF: FPGA: Recv ZSGSRD 31053
17-03-17 18:17:50.328 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:17:50.328 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:17:50.328 -07 000000431 INF: FPGA: Recv ZSGSRD 31048
17-03-17 18:17:50.338 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:17:50.338 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:17:50.338 -07 000000502 INF: FPGA: Recv ZSGSRD 31048
17-03-17 18:17:50.348 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:17:50.348 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:17:50.348 -07 000000431 INF: FPGA: Recv ZSGSRD 31058
17-03-17 18:17:50.358 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:17:50.358 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:17:50.358 -07 000000502 INF: FPGA: Recv ZSGSRD 31058
17-03-17 18:17:50.368 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:17:50.368 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:17:50.368 -07 000000502 INF: FPGA: Recv ZSGSRD 31053
17-03-17 18:17:50.378 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:17:50.378 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:17:50.378 -07 000000502 INF: FPGA: Recv ZSGSRD 31061
17-03-17 18:17:50.388 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:17:50.388 -07 000000618 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:17:50.388 -07 000000502 INF: FPGA: Recv ZPIEZORD 26902
17-03-17 18:17:50.398 -07 000000618 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:17:50.398 -07 000000618 INF: Z Motor: Piezo is near 37.5 V (nominally 0 to 100 V), expect near 46.6 V, since DAC is at 4.660 V. Piezo Error = -9.1 V.
17-03-17 18:17:50.398 -07 000000618 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.8 um, Read 10 ADC samples: Avg = 31054 (-139.0 uncal um), Error = 0.8 uncal um, Median = 31054 (-139.0 uncal um), StdDev = 5 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 31048 (-139.0 uncal um), Max = 31061 (-139.1 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 18:17:50.398 -07 000000618 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 31054, posNoise = 7, negNoise = 6
17-03-17 18:17:50.398 -07 000000618 INF: Z Motor: After move to -0.139808, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:17:50.398 -07 000000618 INF: Z Motor: Settle wait time = 1792 ms, measure time = 114 ms (allowed 150 ms), total time = 1906 ms
17-03-17 18:17:50.398 -07 000000618 INF: Z Motor: Waiting extra 36 ms after reading position to reach expected total of 150 ms
17-03-17 18:17:50.438 -07 000000618 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1949 ms
17-03-17 18:17:50.438 -07 000000618 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:17:50.438 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:17:50.438 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:17:50.438 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:17:50.438 -07 000000431 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:17:50.438 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:17:50.438 -07 000000448 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:17:50.438 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 18:17:50.438 -07 000000431 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:17:50.448 -07 000000431 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:17:50.448 -07 000000431 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:17:50.458 -07 000000431 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 18:17:50.458 -07 000000431 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-17 18:17:50.458 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:17:50.508 -07 000000502 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:17:50.708 -07 000000448 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:17:50.708 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:17:50.708 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:17:50.708 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-17 18:17:50.748 -07 000000618 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:17:50.748 -07 000000502 INF: FPGA: Recv CAMSNAP
17-03-17 18:17:50.748 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 273 ms to get response, and 285 ms overall
17-03-17 18:17:50.828 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 18:17:50.828 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:17:50.828 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 18:17:50.828 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-17 18:17:50.848 -07 000000448 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:17:50.848 -07 000000502 INF: Autofocus start
17-03-17 18:17:50.848 -07 000000502 INF: MeasureProfile start
17-03-17 18:17:50.848 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:17:50.858 -07 000000448 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 18:17:50.858 -07 000000448 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:17:50.868 -07 000000502 INF: MeasureProfile done
17-03-17 18:17:50.868 -07 000000502 INF: X=16  Z correction [um]=0.0530179
17-03-17 18:17:50.868 -07 000000502 INF: Autofocus finished
17-03-17 18:17:51.058 -07 000000502 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:17:51.058 -07 000000448 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:17:51.058 -07 000000610 INF: ------------ Scan Snapping tile 2 at Y-position 60.7333984375, Z-position -0.13982083586138. ----------
17-03-17 18:17:51.068 -07 000000610 INF: Cycle	11	Tile	2	Exposure Settings		A	392	G	188	T	188	C	392
17-03-17 18:17:51.068 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 29065, sync = True, waitForSettling = True)
17-03-17 18:17:51.068 -07 000000610 INF: Z Motor: Moving to -0.133051 mm, started at -0.139821 mm, distance = 6.77 um
17-03-17 18:17:51.068 -07 000000610 INF: FPGA: Xmit ZDACW 29065\n [Z Motor]
17-03-17 18:17:51.068 -07 000000431 INF: FPGA: Recv ZDACW
17-03-17 18:17:51.078 -07 000000610 INF: FPGA: 'ZDACW 29065' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:17:51.078 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:17:51.078 -07 000000512 INF: FPGA: Recv ZDACR 29065
17-03-17 18:17:51.088 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:17:51.088 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:17:51.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:17:51.238 -07 000000561 INF: FPGA: Recv ZSGSRD 30002
17-03-17 18:17:51.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:17:51.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:17:51.248 -07 000000478 INF: FPGA: Recv ZSGSRD 30004
17-03-17 18:17:51.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:17:51.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:17:51.258 -07 000000502 INF: FPGA: Recv ZSGSRD 29999
17-03-17 18:17:51.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:17:51.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:17:51.268 -07 000000448 INF: FPGA: Recv ZSGSRD 30001
17-03-17 18:17:51.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:17:51.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:17:51.278 -07 000000618 INF: FPGA: Recv ZSGSRD 29997
17-03-17 18:17:51.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:17:51.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:17:51.288 -07 000000478 INF: FPGA: Recv ZSGSRD 30000
17-03-17 18:17:51.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:17:51.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:17:51.298 -07 000000431 INF: FPGA: Recv ZSGSRD 30003
17-03-17 18:17:51.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:17:51.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:17:51.308 -07 000000448 INF: FPGA: Recv ZSGSRD 30001
17-03-17 18:17:51.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:17:51.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:17:51.318 -07 000000512 INF: FPGA: Recv ZSGSRD 30004
17-03-17 18:17:51.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:17:51.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:17:51.328 -07 000000478 INF: FPGA: Recv ZSGSRD 30003
17-03-17 18:17:51.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:17:51.338 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:17:51.338 -07 000000431 INF: FPGA: Recv ZPIEZORD 25552
17-03-17 18:17:51.348 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:17:51.348 -07 000000610 INF: Z Motor: Piezo is near 34.6 V (nominally 0 to 100 V), expect near 44.4 V, since DAC is at 4.435 V. Piezo Error = -9.8 V.
17-03-17 18:17:51.348 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.1 um, Read 10 ADC samples: Avg = 30001 (-132.3 uncal um), Error = 0.8 uncal um, Median = 30002 (-132.3 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 29997 (-132.2 uncal um), Max = 30004 (-132.3 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 18:17:51.348 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30001, posNoise = 3, negNoise = 4
17-03-17 18:17:51.348 -07 000000610 INF: Z Motor: After move to -0.133051, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:17:51.348 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 18:17:51.348 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:17:51.348 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:17:51.348 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:17:51.348 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:17:51.348 -07 000000429 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:17:51.348 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:17:51.348 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:17:51.348 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:17:51.348 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 18:17:51.348 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:17:51.348 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:17:51.348 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:17:51.348 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 18:17:51.348 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:17:51.348 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 18:17:51.348 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:17:51.368 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-17 18:17:51.368 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 18:17:51.368 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 11 ms.
17-03-17 18:17:51.368 -07 000000429 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 18:17:51.368 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 392 392 188 188 29242 150\n [Camera]
17-03-17 18:17:51.568 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:17:51.578 -07 000000429 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:17:51.578 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 10. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=93, R2=102, Total=195. Warn if over 250 bubbles per interval.
17-03-17 18:17:51.958 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 584
17-03-17 18:17:51.958 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 584
17-03-17 18:17:51.958 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:17:51.958 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 584
17-03-17 18:17:51.958 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 584
17-03-17 18:17:51.958 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:17:51.968 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:17:51.968 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-17 18:17:51.968 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:17:51.968 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1055068208, 0x0, 418435064) start.
17-03-17 18:17:52.148 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29242 777
17-03-17 18:17:52.298 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP turning grn on 927
17-03-17 18:17:52.338 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1055068208, 0x0, 418435064) end. Duration was 367 ms.
17-03-17 18:17:52.338 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 367 ms.
17-03-17 18:17:52.338 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:17:52.338 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 373 ms.
17-03-17 18:17:52.338 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 373 ms.
17-03-17 18:17:52.338 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:17:52.338 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:17:52.338 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:17:52.338 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 18:17:52.348 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 383 ms.
17-03-17 18:17:52.488 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1115
17-03-17 18:17:52.488 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1115
17-03-17 18:17:52.488 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:17:52.488 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1115
17-03-17 18:17:52.488 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1115
17-03-17 18:17:52.498 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:17:52.498 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:17:52.498 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 1090490472, 0x0, 391868352) start.
17-03-17 18:17:52.498 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:17:52.498 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 1125912736, 0x0, 418435064) start.
17-03-17 18:17:52.678 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP 1308
17-03-17 18:17:52.678 -07 000000561 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:17:52.678 -07 000000610 INF: FPGA: 'CAMDBLSNAP 392 392 188 188 29242 150' command took 4 ms to send, 1307 ms to get response, and 1315 ms overall
17-03-17 18:17:52.688 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 18:17:52.818 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 3 at Y-position 60.7333984375, Z-Position -0.133056140476105. ------
17-03-17 18:17:52.818 -07 000000561 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:17:52.818 -07 000000478 INF: Y Motor: MoveYZ optimized starting. Moving Y to 61.5726 mm, moving Z to -0.13970 mm
17-03-17 18:17:52.818 -07 000000478 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:17:52.818 -07 000000569 INF: Z Motor: Entering MoveAbsStepped (DAC = 30518, sync = True, waitForSettling = False)
17-03-17 18:17:52.818 -07 000000569 INF: Z Motor: Moving to -0.139702 mm, started at -0.133056 mm, distance = -6.65 um
17-03-17 18:17:52.818 -07 000000626 INF: Y Motor: Entering MoveAbsStepped (target = 98516 steps, sync = True, waitForSettling = True)
17-03-17 18:17:52.818 -07 000000626 INF: Y Motor: Moving to 61.5726 mm, started at 60.7334 mm, delta = 0.8392 mm
17-03-17 18:17:52.818 -07 000000429 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:17:52.828 -07 000000561 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 18:17:52.828 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:17:52.828 -07 000000502 INF: FPGA: Recv YRDPOS 124383
17-03-17 18:17:52.838 -07 000000561 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:17:52.838 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-17 18:17:52.838 -07 000000626 INF: Y Motor: Encoder = 124383 = motor step 97174.2 = 60.7339 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:17:52.838 -07 000000626 INF: Y Motor: Last commanded position = 60.7426 mm (97188.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:17:52.838 -07 000000626 INF: Y Motor: Moving 1342 steps-19
17-03-17 18:17:52.848 -07 000000569 INF: FPGA: Xmit ZDACW 30518\n [Z Motor]
17-03-17 18:17:52.848 -07 000000431 INF: FPGA: Recv ZDACW
17-03-17 18:17:52.858 -07 000000626 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:17:52.858 -07 000000569 INF: FPGA: 'ZDACW 30518' command took 0 ms to send, 0 ms to get response, and 32 ms overall
17-03-17 18:17:52.868 -07 000000569 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:17:52.868 -07 000000512 INF: FPGA: Recv ZDACR 30518
17-03-17 18:17:52.878 -07 000000569 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 18:17:52.878 -07 000000569 INF: Z Motor: MoveAbsStepped took 52 ms (did NOT wait for settling yet))
17-03-17 18:17:52.878 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 1090490472, 0x0, 391868352) end. Duration was 383 ms.
17-03-17 18:17:52.878 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 18:17:52.878 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:17:52.888 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 1125912736, 0x0, 418435064) end. Duration was 383 ms.
17-03-17 18:17:52.888 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 383 ms.
17-03-17 18:17:52.888 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:17:52.888 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:17:52.888 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 18:17:52.888 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:17:52.898 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-17 18:17:53.038 -07 000000569 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:17:53.038 -07 000000561 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 212 ms overall
17-03-17 18:17:53.238 -07 000000482 INF: FPGA: Recv YMVTILE
17-03-17 18:17:53.238 -07 000000626 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 371 ms to get response, and 396 ms overall
17-03-17 18:17:53.268 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:17:53.268 -07 000000424 INF: FPGA: Recv YRDPOS 126084
17-03-17 18:17:53.278 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:17:53.278 -07 000000626 INF: Y Motor: Encoder = 126084 = motor step 98503.1 = 61.5645 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:17:53.278 -07 000000626 INF: Y Motor: Position error before settling (table move) = -17 encoder counts (-0.008 mm)
17-03-17 18:17:53.278 -07 000000626 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.839 mm, average velocity = 2.114 mm/sec
17-03-17 18:17:54.228 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:17:54.228 -07 000000431 INF: FPGA: Recv YRDPOS 126084
17-03-17 18:17:54.238 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:17:54.238 -07 000000626 INF: Y Motor: Encoder = 126084 = motor step 98503.1 = 61.5645 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:17:54.268 -07 000000626 INF: Y Motor: After move to 61.572609, error = -0.008156, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:17:54.268 -07 000000626 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:17:54.268 -07 000000626 INF: Y Motor: Moved to 61.5645 after 1443 ms (table move)
17-03-17 18:17:54.268 -07 000000478 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139702 mm (DAC = 30518)
17-03-17 18:17:54.268 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:17:54.278 -07 000000626 INF: FPGA: Recv ZSGSRD 31026
17-03-17 18:17:54.278 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 18:17:54.278 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:17:54.278 -07 000000626 INF: FPGA: Recv ZSGSRD 31036
17-03-17 18:17:54.288 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:17:54.288 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:17:54.288 -07 000000626 INF: FPGA: Recv ZSGSRD 31039
17-03-17 18:17:54.298 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:17:54.298 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:17:54.298 -07 000000626 INF: FPGA: Recv ZSGSRD 31038
17-03-17 18:17:54.308 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:17:54.308 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:17:54.308 -07 000000626 INF: FPGA: Recv ZSGSRD 31048
17-03-17 18:17:54.318 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:17:54.318 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:17:54.318 -07 000000626 INF: FPGA: Recv ZSGSRD 31032
17-03-17 18:17:54.328 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:17:54.328 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:17:54.328 -07 000000431 INF: FPGA: Recv ZSGSRD 31029
17-03-17 18:17:54.338 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:17:54.338 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:17:54.338 -07 000000431 INF: FPGA: Recv ZSGSRD 31028
17-03-17 18:17:54.348 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:17:54.348 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:17:54.348 -07 000000431 INF: FPGA: Recv ZSGSRD 31033
17-03-17 18:17:54.358 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:17:54.358 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:17:54.358 -07 000000431 INF: FPGA: Recv ZSGSRD 31040
17-03-17 18:17:54.368 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:17:54.368 -07 000000478 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:17:54.368 -07 000000431 INF: FPGA: Recv ZPIEZORD 26884
17-03-17 18:17:54.378 -07 000000478 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:17:54.378 -07 000000478 INF: Z Motor: Piezo is near 37.4 V (nominally 0 to 100 V), expect near 46.6 V, since DAC is at 4.657 V. Piezo Error = -9.1 V.
17-03-17 18:17:54.378 -07 000000478 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.7 um, Read 10 ADC samples: Avg = 31035 (-138.9 uncal um), Error = 0.8 uncal um, Median = 31034 (-138.9 uncal um), StdDev = 7 (0.0 uncal um), Range = 22 (0.1 uncal um), Min = 31026 (-138.8 uncal um), Max = 31048 (-139.0 uncal um), Pos Noise = 13 (0.1 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 18:17:54.378 -07 000000478 INF: Z Motor: ADC noise = 13, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 31035, posNoise = 13, negNoise = 9
17-03-17 18:17:54.378 -07 000000478 INF: Z Motor: After move to -0.139702, error = 0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:17:54.378 -07 000000478 INF: Z Motor: Settle wait time = 1446 ms, measure time = 108 ms (allowed 150 ms), total time = 1554 ms
17-03-17 18:17:54.378 -07 000000478 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-17 18:17:54.428 -07 000000478 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1605 ms
17-03-17 18:17:54.428 -07 000000478 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:17:54.428 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:17:54.428 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:17:54.428 -07 000000431 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:17:54.428 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:17:54.428 -07 000000478 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:17:54.428 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:17:54.428 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:17:54.428 -07 000000431 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:17:54.438 -07 000000431 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:17:54.438 -07 000000431 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:17:54.438 -07 000000431 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 18:17:54.438 -07 000000431 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 18:17:54.448 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:17:54.488 -07 000000478 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:17:54.688 -07 000000478 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:17:54.688 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:17:54.688 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:17:54.698 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-17 18:17:54.738 -07 000000478 INF: FPGA: Recv @CAMSNAP 284
17-03-17 18:17:54.738 -07 000000431 INF: FPGA: Recv CAMSNAP
17-03-17 18:17:54.738 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 282 ms to get response, and 288 ms overall
17-03-17 18:17:54.808 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 113 ms.
17-03-17 18:17:54.808 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:17:54.808 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 18:17:54.808 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 18:17:54.838 -07 000000478 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:17:54.838 -07 000000626 INF: Autofocus start
17-03-17 18:17:54.838 -07 000000626 INF: MeasureProfile start
17-03-17 18:17:54.838 -07 000000431 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:17:54.848 -07 000000478 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 18:17:54.848 -07 000000478 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:17:54.858 -07 000000626 INF: MeasureProfile done
17-03-17 18:17:54.858 -07 000000626 INF: X=-16  Z correction [um]=-0.08128808
17-03-17 18:17:54.858 -07 000000626 INF: Autofocus finished
17-03-17 18:17:55.048 -07 000000626 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:17:55.048 -07 000000478 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:17:55.048 -07 000000610 INF: ------------ Scan Snapping tile 3 at Y-position 61.564453125, Z-position -0.139698775830686. ----------
17-03-17 18:17:55.048 -07 000000610 INF: Cycle	11	Tile	3	Exposure Settings		A	392	G	188	T	188	C	392
17-03-17 18:17:55.058 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 29013, sync = True, waitForSettling = True)
17-03-17 18:17:55.058 -07 000000610 INF: Z Motor: Moving to -0.132813 mm, started at -0.139699 mm, distance = 6.89 um
17-03-17 18:17:55.058 -07 000000610 INF: FPGA: Xmit ZDACW 29013\n [Z Motor]
17-03-17 18:17:55.058 -07 000000478 INF: FPGA: Recv ZDACW
17-03-17 18:17:55.068 -07 000000610 INF: FPGA: 'ZDACW 29013' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:17:55.068 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:17:55.068 -07 000000626 INF: FPGA: Recv ZDACR 29013
17-03-17 18:17:55.078 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:17:55.078 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:17:55.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:17:55.228 -07 000000478 INF: FPGA: Recv ZSGSRD 29964
17-03-17 18:17:55.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:17:55.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:17:55.238 -07 000000459 INF: FPGA: Recv ZSGSRD 29970
17-03-17 18:17:55.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:17:55.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:17:55.248 -07 000000433 INF: FPGA: Recv ZSGSRD 29964
17-03-17 18:17:55.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:17:55.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:17:55.258 -07 000000431 INF: FPGA: Recv ZSGSRD 29956
17-03-17 18:17:55.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:17:55.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:17:55.268 -07 000000433 INF: FPGA: Recv ZSGSRD 29967
17-03-17 18:17:55.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:17:55.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:17:55.278 -07 000000431 INF: FPGA: Recv ZSGSRD 29970
17-03-17 18:17:55.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:17:55.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:17:55.288 -07 000000478 INF: FPGA: Recv ZSGSRD 29962
17-03-17 18:17:55.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:17:55.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:17:55.298 -07 000000431 INF: FPGA: Recv ZSGSRD 29967
17-03-17 18:17:55.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:17:55.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:17:55.308 -07 000000478 INF: FPGA: Recv ZSGSRD 29968
17-03-17 18:17:55.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:17:55.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:17:55.318 -07 000000431 INF: FPGA: Recv ZSGSRD 29970
17-03-17 18:17:55.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:17:55.328 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:17:55.328 -07 000000478 INF: FPGA: Recv ZPIEZORD 25504
17-03-17 18:17:55.338 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:17:55.338 -07 000000610 INF: Z Motor: Piezo is near 34.5 V (nominally 0 to 100 V), expect near 44.3 V, since DAC is at 4.427 V. Piezo Error = -9.8 V.
17-03-17 18:17:55.338 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.8 um, Read 10 ADC samples: Avg = 29966 (-132.0 uncal um), Error = 0.8 uncal um, Median = 29967 (-132.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 29956 (-132.0 uncal um), Max = 29970 (-132.1 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-17 18:17:55.338 -07 000000610 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29966, posNoise = 4, negNoise = 10
17-03-17 18:17:55.338 -07 000000610 INF: Z Motor: After move to -0.132813, error = -0.000018, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:17:55.338 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 18:17:55.338 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:17:55.338 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:17:55.338 -07 000000459 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:17:55.338 -07 000000431 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:17:55.338 -07 000000433 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:17:55.338 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:17:55.338 -07 000000478 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:17:55.338 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:17:55.338 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:17:55.338 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:17:55.338 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:17:55.338 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:17:55.338 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 18:17:55.338 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:17:55.348 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 18:17:55.348 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:17:55.348 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 18:17:55.348 -07 000000478 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 18:17:55.358 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 11 ms.
17-03-17 18:17:55.358 -07 000000433 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 18:17:55.358 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 392 392 188 188 29190 150\n [Camera]
17-03-17 18:17:55.558 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:17:55.698 -07 000000627 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 11, FrontChillerTemperature: 3.986717,
17-03-17 18:17:55.948 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 584
17-03-17 18:17:55.948 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 584
17-03-17 18:17:55.948 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:17:55.948 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 584
17-03-17 18:17:55.948 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 584
17-03-17 18:17:55.948 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:17:55.958 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:17:55.958 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-17 18:17:55.958 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:17:55.958 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 1055068208, 0x0, 418435064) start.
17-03-17 18:17:56.138 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29190 777
17-03-17 18:17:56.288 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP turning grn on 927
17-03-17 18:17:56.328 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 1055068208, 0x0, 418435064) end. Duration was 368 ms.
17-03-17 18:17:56.328 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 369 ms.
17-03-17 18:17:56.328 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:17:56.328 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 372 ms.
17-03-17 18:17:56.328 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 373 ms.
17-03-17 18:17:56.328 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:17:56.328 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 18:17:56.328 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 18:17:56.328 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 18:17:56.338 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 18:17:56.478 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1115
17-03-17 18:17:56.478 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1115
17-03-17 18:17:56.478 -07 000000433 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:17:56.478 -07 000000433 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:17:56.478 -07 000000433 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 18:17:56.478 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1115
17-03-17 18:17:56.478 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1115
17-03-17 18:17:56.488 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:17:56.488 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:17:56.488 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 2485095640, 0x0, 418435064) start.
17-03-17 18:17:56.578 -07 000000459 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:17:56.578 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 10. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=93, R2=102, Total=195. Warn if over 250 bubbles per interval.
17-03-17 18:17:56.678 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP 1310
17-03-17 18:17:56.678 -07 000000459 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:17:56.678 -07 000000610 INF: FPGA: 'CAMDBLSNAP 392 392 188 188 29190 150' command took 2 ms to send, 1311 ms to get response, and 1317 ms overall
17-03-17 18:17:56.678 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 18:17:56.678 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 4 at Y-position 61.564453125, Z-Position -0.132831293051144. ------
17-03-17 18:17:56.678 -07 000000541 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:17:56.678 -07 000000626 INF: Y Motor: MoveYZ optimized starting. Moving Y to 62.4026 mm, moving Z to -0.13918 mm
17-03-17 18:17:56.678 -07 000000626 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:17:56.678 -07 000000415 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:17:56.688 -07 000000541 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 18:17:56.688 -07 000000541 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:17:56.688 -07 000000459 INF: Y Motor: Entering MoveAbsStepped (target = 99844 steps, sync = True, waitForSettling = True)
17-03-17 18:17:56.688 -07 000000627 INF: Z Motor: Entering MoveAbsStepped (DAC = 30404, sync = True, waitForSettling = False)
17-03-17 18:17:56.688 -07 000000627 INF: Z Motor: Moving to -0.139181 mm, started at -0.132831 mm, distance = -6.35 um
17-03-17 18:17:56.688 -07 000000459 INF: Y Motor: Moving to 62.4026 mm, started at 61.5645 mm, delta = 0.8382 mm
17-03-17 18:17:56.698 -07 000000627 INF: FPGA: Xmit ZDACW 30404\n [Z Motor]
17-03-17 18:17:56.698 -07 000000486 INF: FPGA: Recv ZDACW
17-03-17 18:17:56.708 -07 000000459 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:17:56.708 -07 000000627 INF: FPGA: 'ZDACW 30404' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-17 18:17:56.708 -07 000000429 INF: FPGA: Recv YRDPOS 126085
17-03-17 18:17:56.718 -07 000000459 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-17 18:17:56.718 -07 000000459 INF: Y Motor: Encoder = 126085 = motor step 98503.9 = 61.5649 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:17:56.718 -07 000000459 INF: Y Motor: Last commanded position = 61.5726 mm (98516.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:17:56.718 -07 000000459 INF: Y Motor: Moving 1340 steps-17
17-03-17 18:17:56.728 -07 000000627 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:17:56.728 -07 000000431 INF: FPGA: Recv ZDACR 30404
17-03-17 18:17:56.738 -07 000000459 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:17:56.738 -07 000000627 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:17:56.738 -07 000000627 INF: Z Motor: MoveAbsStepped took 48 ms (did NOT wait for settling yet))
17-03-17 18:17:56.858 -07 000000433 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 381 ms.
17-03-17 18:17:56.858 -07 000000433 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 18:17:56.858 -07 000000433 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:17:56.868 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 2485095640, 0x0, 418435064) end. Duration was 379 ms.
17-03-17 18:17:56.868 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-17 18:17:56.868 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:17:56.868 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:17:56.868 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 18:17:56.868 -07 000000433 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 18:17:56.878 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 18:17:56.888 -07 000000502 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:17:56.888 -07 000000541 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:17:57.748 -07 000000429 INF: FPGA: Recv YMVTILE
17-03-17 18:17:57.748 -07 000000459 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 1000 ms to get response, and 1024 ms overall
17-03-17 18:17:57.788 -07 000000459 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:17:57.788 -07 000000627 INF: FPGA: Recv YRDPOS 127787
17-03-17 18:17:57.798 -07 000000459 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-17 18:17:57.798 -07 000000459 INF: Y Motor: Encoder = 127787 = motor step 99833.6 = 62.3960 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:17:57.798 -07 000000459 INF: Y Motor: Position error before settling (table move) = -14 encoder counts (-0.007 mm)
17-03-17 18:17:57.798 -07 000000459 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 1024 ms, distance = 0.838 mm, average velocity = 0.819 mm/sec
17-03-17 18:17:58.748 -07 000000459 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:17:58.748 -07 000000448 INF: FPGA: Recv YRDPOS 127788
17-03-17 18:17:58.758 -07 000000459 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:17:58.758 -07 000000459 INF: Y Motor: Encoder = 127788 = motor step 99834.4 = 62.3965 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:17:58.768 -07 000000459 INF: Y Motor: After move to 62.402607, error = -0.006123, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:17:58.768 -07 000000459 INF: Y Motor: Position error after settling (table move) = -13 encoder counts (-0.006 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 18:17:58.768 -07 000000459 INF: Y Motor: Moved to 62.3965 after 2086 ms (table move)
17-03-17 18:17:58.778 -07 000000626 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139181 mm (DAC = 30404)
17-03-17 18:17:58.778 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:17:58.778 -07 000000448 INF: FPGA: Recv ZSGSRD 30957
17-03-17 18:17:58.788 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:17:58.788 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:17:58.788 -07 000000459 INF: FPGA: Recv ZSGSRD 30957
17-03-17 18:17:58.798 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:17:58.798 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:17:58.798 -07 000000448 INF: FPGA: Recv ZSGSRD 30949
17-03-17 18:17:58.808 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:17:58.808 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:17:58.808 -07 000000541 INF: FPGA: Recv ZSGSRD 30958
17-03-17 18:17:58.818 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:17:58.818 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:17:58.818 -07 000000541 INF: FPGA: Recv ZSGSRD 30952
17-03-17 18:17:58.828 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:17:58.828 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:17:58.828 -07 000000459 INF: FPGA: Recv ZSGSRD 30956
17-03-17 18:17:58.838 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:17:58.838 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:17:58.838 -07 000000459 INF: FPGA: Recv ZSGSRD 30959
17-03-17 18:17:58.848 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:17:58.848 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:17:58.848 -07 000000502 INF: FPGA: Recv ZSGSRD 30951
17-03-17 18:17:58.858 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:17:58.858 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:17:58.858 -07 000000459 INF: FPGA: Recv ZSGSRD 30956
17-03-17 18:17:58.868 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:17:58.868 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:17:58.868 -07 000000502 INF: FPGA: Recv ZSGSRD 30956
17-03-17 18:17:58.878 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:17:58.878 -07 000000626 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:17:58.878 -07 000000502 INF: FPGA: Recv ZPIEZORD 26796
17-03-17 18:17:58.888 -07 000000626 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:17:58.888 -07 000000626 INF: Z Motor: Piezo is near 37.2 V (nominally 0 to 100 V), expect near 46.4 V, since DAC is at 4.639 V. Piezo Error = -9.2 V.
17-03-17 18:17:58.888 -07 000000626 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.2 um, Read 10 ADC samples: Avg = 30955 (-138.4 uncal um), Error = 0.8 uncal um, Median = 30956 (-138.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 30949 (-138.3 uncal um), Max = 30959 (-138.4 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 18:17:58.888 -07 000000626 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30955, posNoise = 4, negNoise = 6
17-03-17 18:17:58.888 -07 000000626 INF: Z Motor: After move to -0.139181, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:17:58.888 -07 000000626 INF: Z Motor: Settle wait time = 2089 ms, measure time = 109 ms (allowed 150 ms), total time = 2198 ms
17-03-17 18:17:58.888 -07 000000626 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-17 18:17:58.938 -07 000000626 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2253 ms
17-03-17 18:17:58.938 -07 000000626 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:17:58.938 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:17:58.938 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:17:58.938 -07 000000627 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:17:58.938 -07 000000486 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:17:58.938 -07 000000429 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:17:58.938 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:17:58.938 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:17:58.938 -07 000000429 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:17:58.948 -07 000000429 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:17:58.948 -07 000000429 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:17:58.958 -07 000000429 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 18:17:58.958 -07 000000429 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 13 ms.
17-03-17 18:17:58.958 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:17:58.998 -07 000000626 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:17:59.198 -07 000000415 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:17:59.198 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:17:59.198 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:17:59.198 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2520517904, 0x0, 559484976) start.
17-03-17 18:17:59.238 -07 000000431 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:17:59.238 -07 000000429 INF: FPGA: Recv CAMSNAP
17-03-17 18:17:59.238 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 277 ms to get response, and 285 ms overall
17-03-17 18:17:59.328 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2520517904, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 18:17:59.328 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:17:59.328 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 18:17:59.328 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 130 ms.
17-03-17 18:17:59.438 -07 000000448 INF: Autofocus start
17-03-17 18:17:59.438 -07 000000448 INF: MeasureProfile start
17-03-17 18:17:59.438 -07 000000486 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:17:59.438 -07 000000431 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:17:59.448 -07 000000486 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:17:59.448 -07 000000486 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:17:59.448 -07 000000448 INF: MeasureProfile done
17-03-17 18:17:59.448 -07 000000448 INF: X=15  Z correction [um]=0.04820751
17-03-17 18:17:59.448 -07 000000448 INF: Autofocus finished
17-03-17 18:17:59.648 -07 000000482 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:17:59.648 -07 000000486 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:17:59.648 -07 000000610 INF: ------------ Scan Snapping tile 4 at Y-position 62.396484375, Z-position -0.139184838859345. ----------
17-03-17 18:17:59.648 -07 000000610 INF: Cycle	11	Tile	4	Exposure Settings		A	392	G	188	T	188	C	392
17-03-17 18:17:59.658 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28928, sync = True, waitForSettling = True)
17-03-17 18:17:59.658 -07 000000610 INF: Z Motor: Moving to -0.132424 mm, started at -0.139185 mm, distance = 6.76 um
17-03-17 18:17:59.658 -07 000000610 INF: FPGA: Xmit ZDACW 28928\n [Z Motor]
17-03-17 18:17:59.658 -07 000000431 INF: FPGA: Recv ZDACW
17-03-17 18:17:59.668 -07 000000610 INF: FPGA: 'ZDACW 28928' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:17:59.668 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:17:59.668 -07 000000431 INF: FPGA: Recv ZDACR 28928
17-03-17 18:17:59.678 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:17:59.678 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:17:59.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:17:59.828 -07 000000431 INF: FPGA: Recv ZSGSRD 29907
17-03-17 18:17:59.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:17:59.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:17:59.838 -07 000000431 INF: FPGA: Recv ZSGSRD 29908
17-03-17 18:17:59.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:17:59.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:17:59.848 -07 000000459 INF: FPGA: Recv ZSGSRD 29905
17-03-17 18:17:59.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:17:59.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:17:59.858 -07 000000415 INF: FPGA: Recv ZSGSRD 29900
17-03-17 18:17:59.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:17:59.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:17:59.868 -07 000000415 INF: FPGA: Recv ZSGSRD 29906
17-03-17 18:17:59.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:17:59.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:17:59.878 -07 000000415 INF: FPGA: Recv ZSGSRD 29909
17-03-17 18:17:59.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:17:59.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:17:59.888 -07 000000415 INF: FPGA: Recv ZSGSRD 29895
17-03-17 18:17:59.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:17:59.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:17:59.898 -07 000000415 INF: FPGA: Recv ZSGSRD 29900
17-03-17 18:17:59.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:17:59.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:17:59.908 -07 000000626 INF: FPGA: Recv ZSGSRD 29905
17-03-17 18:17:59.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:17:59.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:17:59.918 -07 000000626 INF: FPGA: Recv ZSGSRD 29902
17-03-17 18:17:59.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:17:59.928 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:17:59.928 -07 000000448 INF: FPGA: Recv ZPIEZORD 25387
17-03-17 18:17:59.938 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:17:59.938 -07 000000610 INF: Z Motor: Piezo is near 34.2 V (nominally 0 to 100 V), expect near 44.1 V, since DAC is at 4.414 V. Piezo Error = -9.9 V.
17-03-17 18:17:59.938 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.4 um, Read 10 ADC samples: Avg = 29904 (-131.6 uncal um), Error = 0.8 uncal um, Median = 29905 (-131.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 29895 (-131.6 uncal um), Max = 29909 (-131.7 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 18:17:59.938 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29904, posNoise = 5, negNoise = 9
17-03-17 18:17:59.938 -07 000000610 INF: Z Motor: After move to -0.132424, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:17:59.938 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 18:17:59.938 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:17:59.938 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:17:59.938 -07 000000459 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:17:59.938 -07 000000429 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:17:59.938 -07 000000415 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:17:59.938 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:17:59.938 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 18:17:59.938 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:17:59.938 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:17:59.938 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:17:59.938 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:17:59.938 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:17:59.948 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 18:17:59.948 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:17:59.948 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 18:17:59.948 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:17:59.958 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 13 ms.
17-03-17 18:17:59.958 -07 000000415 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 18:17:59.958 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms.
17-03-17 18:17:59.958 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 17 ms.
17-03-17 18:17:59.958 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 392 392 188 188 29104 150\n [Camera]
17-03-17 18:18:00.158 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:18:00.548 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 584
17-03-17 18:18:00.548 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 584
17-03-17 18:18:00.558 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:18:00.558 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:18:00.558 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 18:18:00.558 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 584
17-03-17 18:18:00.558 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 584
17-03-17 18:18:00.558 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:18:00.558 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:18:00.558 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-17 18:18:00.748 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29104 777
17-03-17 18:18:00.898 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP turning grn on 927
17-03-17 18:18:00.938 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 377 ms.
17-03-17 18:18:00.938 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-17 18:18:00.938 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:18:00.938 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 383 ms.
17-03-17 18:18:00.938 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:18:00.938 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 18:18:00.938 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:18:00.938 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:18:00.938 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 18:18:00.948 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 18:18:01.058 -07 000000459 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 11, FrontChillerTemperature: 3.994908,
17-03-17 18:18:01.078 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1115
17-03-17 18:18:01.078 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1115
17-03-17 18:18:01.088 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:18:01.088 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:18:01.088 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-17 18:18:01.088 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1115
17-03-17 18:18:01.088 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1115
17-03-17 18:18:01.088 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:18:01.088 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:18:01.088 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 18:18:01.278 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP 1308
17-03-17 18:18:01.278 -07 000000429 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:18:01.278 -07 000000610 INF: FPGA: 'CAMDBLSNAP 392 392 188 188 29104 150' command took 2 ms to send, 1312 ms to get response, and 1315 ms overall
17-03-17 18:18:01.278 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 18:18:01.278 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 5 at Y-position 62.396484375, Z-Position -0.132432991898355. ------
17-03-17 18:18:01.278 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:18:01.278 -07 000000482 INF: Y Motor: MoveYZ optimized starting. Moving Y to 63.2326 mm, moving Z to -0.13917 mm
17-03-17 18:18:01.278 -07 000000482 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:18:01.278 -07 000000382 INF: Y Motor: Entering MoveAbsStepped (target = 101172 steps, sync = True, waitForSettling = True)
17-03-17 18:18:01.288 -07 000000382 INF: Y Motor: Moving to 63.2326 mm, started at 62.3965 mm, delta = 0.8361 mm
17-03-17 18:18:01.288 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:18:01.288 -07 000000486 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:18:01.288 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 18:18:01.288 -07 000000459 INF: Z Motor: Entering MoveAbsStepped (DAC = 30402, sync = True, waitForSettling = False)
17-03-17 18:18:01.288 -07 000000459 INF: Z Motor: Moving to -0.139171 mm, started at -0.132433 mm, distance = -6.74 um
17-03-17 18:18:01.288 -07 000000512 INF: FPGA: Recv YRDPOS 127788
17-03-17 18:18:01.298 -07 000000459 INF: FPGA: Xmit ZDACW 30402\n [Z Motor]
17-03-17 18:18:01.298 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:18:01.298 -07 000000382 INF: Y Motor: Encoder = 127788 = motor step 99834.4 = 62.3965 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:18:01.408 -07 000000486 INF: FPGA: Recv ZDACW
17-03-17 18:18:01.408 -07 000000459 INF: FPGA: 'ZDACW 30402' command took 0 ms to send, 0 ms to get response, and 121 ms overall
17-03-17 18:18:01.408 -07 000000382 INF: Y Motor: Last commanded position = 62.4026 mm (99844.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:18:01.408 -07 000000382 INF: Y Motor: Moving 1338 steps-14
17-03-17 18:18:01.408 -07 000000431 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:18:01.418 -07 000000382 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:18:01.428 -07 000000459 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:18:01.428 -07 000000561 INF: FPGA: Recv ZDACR 30402
17-03-17 18:18:01.438 -07 000000459 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-17 18:18:01.438 -07 000000459 INF: Z Motor: MoveAbsStepped took 149 ms (did NOT wait for settling yet))
17-03-17 18:18:01.478 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 398 ms.
17-03-17 18:18:01.478 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 18:18:01.488 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:18:01.488 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 398 ms.
17-03-17 18:18:01.488 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-17 18:18:01.488 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:18:01.488 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:18:01.488 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 18:18:01.488 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-17 18:18:01.498 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-17 18:18:01.578 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:18:01.578 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 10. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=93, R2=102, Total=195. Warn if over 250 bubbles per interval.
17-03-17 18:18:01.608 -07 000000486 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:18:01.608 -07 000000431 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 196 ms to get response, and 326 ms overall
17-03-17 18:18:01.788 -07 000000618 INF: FPGA: Recv YMVTILE
17-03-17 18:18:01.788 -07 000000382 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 384 ms overall
17-03-17 18:18:01.828 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:18:01.828 -07 000000415 INF: FPGA: Recv YRDPOS 129484
17-03-17 18:18:01.838 -07 000000382 INF: FPGA: 'YRDPOS' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:18:01.838 -07 000000382 INF: Y Motor: Encoder = 129484 = motor step 101159.4 = 63.2246 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:18:01.838 -07 000000382 INF: Y Motor: Position error before settling (table move) = -16 encoder counts (-0.008 mm)
17-03-17 18:18:01.838 -07 000000382 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 384 ms, distance = 0.836 mm, average velocity = 2.177 mm/sec
17-03-17 18:18:02.788 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:18:02.788 -07 000000618 INF: FPGA: Recv YRDPOS 129485
17-03-17 18:18:02.798 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:18:02.798 -07 000000382 INF: Y Motor: Encoder = 129485 = motor step 101160.2 = 63.2251 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:18:02.818 -07 000000382 INF: Y Motor: After move to 63.232609, error = -0.007511, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:18:02.818 -07 000000382 INF: Y Motor: Position error after settling (table move) = -15 encoder counts (-0.007 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 18:18:02.818 -07 000000382 INF: Y Motor: Moved to 63.2251 after 1530 ms (table move)
17-03-17 18:18:02.818 -07 000000482 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139171 mm (DAC = 30402)
17-03-17 18:18:02.818 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:18:02.818 -07 000000382 INF: FPGA: Recv ZSGSRD 30958
17-03-17 18:18:02.828 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 18:18:02.828 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:18:02.828 -07 000000382 INF: FPGA: Recv ZSGSRD 30947
17-03-17 18:18:02.838 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:18:02.838 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:18:02.838 -07 000000382 INF: FPGA: Recv ZSGSRD 30949
17-03-17 18:18:02.848 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:18:02.848 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:18:02.848 -07 000000429 INF: FPGA: Recv ZSGSRD 30953
17-03-17 18:18:02.858 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:18:02.858 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:18:02.858 -07 000000429 INF: FPGA: Recv ZSGSRD 30954
17-03-17 18:18:02.868 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:18:02.868 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:18:02.868 -07 000000512 INF: FPGA: Recv ZSGSRD 30956
17-03-17 18:18:02.878 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:18:02.878 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:18:02.878 -07 000000569 INF: FPGA: Recv ZSGSRD 30951
17-03-17 18:18:02.888 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:18:02.888 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:18:02.888 -07 000000429 INF: FPGA: Recv ZSGSRD 30948
17-03-17 18:18:02.898 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:18:02.898 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:18:02.898 -07 000000512 INF: FPGA: Recv ZSGSRD 30955
17-03-17 18:18:02.908 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:18:02.908 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:18:02.908 -07 000000429 INF: FPGA: Recv ZSGSRD 30948
17-03-17 18:18:02.918 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:18:02.918 -07 000000482 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:18:02.918 -07 000000429 INF: FPGA: Recv ZPIEZORD 26808
17-03-17 18:18:02.928 -07 000000482 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:18:02.928 -07 000000482 INF: Z Motor: Piezo is near 37.3 V (nominally 0 to 100 V), expect near 46.4 V, since DAC is at 4.639 V. Piezo Error = -9.1 V.
17-03-17 18:18:02.928 -07 000000482 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.2 um, Read 10 ADC samples: Avg = 30952 (-138.4 uncal um), Error = 0.8 uncal um, Median = 30952 (-138.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 30947 (-138.3 uncal um), Max = 30958 (-138.4 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 18:18:02.928 -07 000000482 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30952, posNoise = 6, negNoise = 5
17-03-17 18:18:02.928 -07 000000482 INF: Z Motor: After move to -0.139171, error = 0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:18:02.928 -07 000000482 INF: Z Motor: Settle wait time = 1532 ms, measure time = 107 ms (allowed 150 ms), total time = 1639 ms
17-03-17 18:18:02.928 -07 000000482 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-17 18:18:02.978 -07 000000482 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1692 ms
17-03-17 18:18:02.978 -07 000000482 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:18:02.978 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:18:02.978 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:18:02.978 -07 000000431 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:18:02.978 -07 000000486 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:18:02.978 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:18:02.978 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:18:02.978 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 18:18:02.978 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:18:02.988 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:18:02.988 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:18:02.998 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 9 ms.
17-03-17 18:18:02.998 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-17 18:18:02.998 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:18:03.038 -07 000000382 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:18:03.238 -07 000000382 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:18:03.238 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:18:03.238 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:18:03.278 -07 000000618 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:18:03.278 -07 000000415 INF: FPGA: Recv CAMSNAP
17-03-17 18:18:03.278 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 278 ms to get response, and 285 ms overall
17-03-17 18:18:05.388 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-17 18:18:05.508 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 124 ms.
17-03-17 18:18:05.508 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:18:05.508 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 18:18:05.508 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 2268 ms.
17-03-17 18:18:05.578 -07 000000486 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:18:05.578 -07 000000541 INF: Autofocus start
17-03-17 18:18:05.578 -07 000000541 INF: MeasureProfile start
17-03-17 18:18:05.578 -07 000000415 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:18:05.588 -07 000000486 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:18:05.588 -07 000000486 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:18:05.588 -07 000000541 INF: MeasureProfile done
17-03-17 18:18:05.588 -07 000000541 INF: X=-32  Z correction [um]=-0.1591732
17-03-17 18:18:05.588 -07 000000541 INF: Autofocus finished
17-03-17 18:18:05.788 -07 000000431 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:18:05.788 -07 000000486 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:18:05.788 -07 000000610 INF: ------------ Scan Snapping tile 5 at Y-position 63.22509765625, Z-position -0.13916556622292. ----------
17-03-17 18:18:05.788 -07 000000610 INF: Cycle	11	Tile	5	Exposure Settings		A	392	G	188	T	188	C	392
17-03-17 18:18:05.798 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28880, sync = True, waitForSettling = True)
17-03-17 18:18:05.798 -07 000000610 INF: Z Motor: Moving to -0.132204 mm, started at -0.139166 mm, distance = 6.96 um
17-03-17 18:18:05.798 -07 000000610 INF: FPGA: Xmit ZDACW 28880\n [Z Motor]
17-03-17 18:18:05.798 -07 000000482 INF: FPGA: Recv ZDACW
17-03-17 18:18:05.808 -07 000000610 INF: FPGA: 'ZDACW 28880' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:18:05.808 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:18:05.808 -07 000000415 INF: FPGA: Recv ZDACR 28880
17-03-17 18:18:05.818 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:18:05.818 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:18:05.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:18:05.968 -07 000000627 INF: FPGA: Recv ZSGSRD 29875
17-03-17 18:18:05.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:18:05.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:18:05.978 -07 000000429 INF: FPGA: Recv ZSGSRD 29873
17-03-17 18:18:05.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:18:05.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:18:05.988 -07 000000561 INF: FPGA: Recv ZSGSRD 29869
17-03-17 18:18:05.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:18:05.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:18:05.998 -07 000000415 INF: FPGA: Recv ZSGSRD 29873
17-03-17 18:18:06.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:18:06.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:18:06.008 -07 000000459 INF: FPGA: Recv ZSGSRD 29870
17-03-17 18:18:06.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:18:06.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:18:06.018 -07 000000541 INF: FPGA: Recv ZSGSRD 29870
17-03-17 18:18:06.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:18:06.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:18:06.028 -07 000000512 INF: FPGA: Recv ZSGSRD 29873
17-03-17 18:18:06.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:18:06.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:18:06.038 -07 000000431 INF: FPGA: Recv ZSGSRD 29866
17-03-17 18:18:06.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:18:06.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:18:06.048 -07 000000382 INF: FPGA: Recv ZSGSRD 29872
17-03-17 18:18:06.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:18:06.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:18:06.058 -07 000000382 INF: FPGA: Recv ZSGSRD 29869
17-03-17 18:18:06.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:18:06.068 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:18:06.068 -07 000000486 INF: FPGA: Recv ZPIEZORD 25372
17-03-17 18:18:06.078 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:18:06.078 -07 000000610 INF: Z Motor: Piezo is near 34.2 V (nominally 0 to 100 V), expect near 44.1 V, since DAC is at 4.407 V. Piezo Error = -9.9 V.
17-03-17 18:18:06.078 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.2 um, Read 10 ADC samples: Avg = 29871 (-131.4 uncal um), Error = 0.8 uncal um, Median = 29871 (-131.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29866 (-131.4 uncal um), Max = 29875 (-131.5 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 18:18:06.078 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29871, posNoise = 4, negNoise = 5
17-03-17 18:18:06.078 -07 000000610 INF: Z Motor: After move to -0.132204, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:18:06.078 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 18:18:06.078 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:18:06.078 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:18:06.078 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:18:06.078 -07 000000431 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:18:06.078 -07 000000627 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:18:06.078 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:18:06.078 -07 000000429 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:18:06.078 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:18:06.078 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:18:06.078 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:18:06.078 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:18:06.078 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:18:06.088 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 18:18:06.088 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:18:06.088 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 18:18:06.088 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:18:06.098 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 14 ms.
17-03-17 18:18:06.098 -07 000000627 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 18 ms.
17-03-17 18:18:06.098 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 18:18:06.098 -07 000000429 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 18:18:06.108 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 392 392 188 188 29056 150\n [Camera]
17-03-17 18:18:06.298 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:18:06.418 -07 000000448 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 11, FrontChillerTemperature: 4.026244,
17-03-17 18:18:06.578 -07 000000627 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:18:06.578 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 10. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=93, R2=102, Total=195. Warn if over 250 bubbles per interval.
17-03-17 18:18:06.698 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 584
17-03-17 18:18:06.698 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 584
17-03-17 18:18:06.698 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 584
17-03-17 18:18:06.698 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:18:06.698 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 584
17-03-17 18:18:06.698 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:18:06.708 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:18:06.708 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-17 18:18:06.708 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:18:06.708 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 1055068208, 0x0, 418435064) start.
17-03-17 18:18:06.888 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29056 777
17-03-17 18:18:07.038 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning grn on 930
17-03-17 18:18:07.098 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 1055068208, 0x0, 418435064) end. Duration was 395 ms.
17-03-17 18:18:07.098 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 18:18:07.098 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:18:07.098 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 396 ms.
17-03-17 18:18:07.098 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 18:18:07.098 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:18:07.108 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:18:07.108 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:18:07.108 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 408 ms.
17-03-17 18:18:07.108 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-17 18:18:07.228 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1115
17-03-17 18:18:07.228 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1115
17-03-17 18:18:07.228 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:18:07.228 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1115
17-03-17 18:18:07.228 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1115
17-03-17 18:18:07.228 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:18:07.238 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:18:07.238 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 1090490472, 0x0, 391868352) start.
17-03-17 18:18:07.238 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:18:07.238 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 1125912736, 0x0, 418435064) start.
17-03-17 18:18:07.418 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP 1307
17-03-17 18:18:07.418 -07 000000569 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:18:07.418 -07 000000610 INF: FPGA: 'CAMDBLSNAP 392 392 188 188 29056 150' command took 2 ms to send, 1304 ms to get response, and 1315 ms overall
17-03-17 18:18:07.418 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 18:18:07.418 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 6 at Y-position 63.22509765625, Z-Position -0.132220992897677. ------
17-03-17 18:18:07.428 -07 000000382 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:18:07.428 -07 000000448 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.0626 mm, moving Z to -0.13875 mm
17-03-17 18:18:07.428 -07 000000448 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:18:07.538 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:18:07.538 -07 000000382 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 114 ms overall
17-03-17 18:18:07.538 -07 000000382 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:18:07.538 -07 000000459 INF: Y Motor: Entering MoveAbsStepped (target = 102500 steps, sync = True, waitForSettling = True)
17-03-17 18:18:07.538 -07 000000459 INF: Y Motor: Moving to 64.0626 mm, started at 63.2251 mm, delta = 0.8375 mm
17-03-17 18:18:07.538 -07 000000569 INF: Z Motor: Entering MoveAbsStepped (DAC = 30310, sync = True, waitForSettling = False)
17-03-17 18:18:07.538 -07 000000569 INF: Z Motor: Moving to -0.138750 mm, started at -0.132221 mm, distance = -6.53 um
17-03-17 18:18:07.548 -07 000000569 INF: FPGA: Xmit ZDACW 30310\n [Z Motor]
17-03-17 18:18:07.548 -07 000000429 INF: FPGA: Recv ZDACW
17-03-17 18:18:07.558 -07 000000459 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:18:07.558 -07 000000569 INF: FPGA: 'ZDACW 30310' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-17 18:18:07.558 -07 000000502 INF: FPGA: Recv YRDPOS 129485
17-03-17 18:18:07.568 -07 000000569 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:18:07.568 -07 000000459 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-17 18:18:07.568 -07 000000459 INF: Y Motor: Encoder = 129485 = motor step 101160.2 = 63.2251 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:18:07.568 -07 000000459 INF: Y Motor: Last commanded position = 63.2326 mm (101172.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:18:07.568 -07 000000459 INF: Y Motor: Moving 1340 steps-16
17-03-17 18:18:07.568 -07 000000429 INF: FPGA: Recv ZDACR 30310
17-03-17 18:18:07.578 -07 000000569 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 18:18:07.578 -07 000000569 INF: Z Motor: MoveAbsStepped took 32 ms (did NOT wait for settling yet))
17-03-17 18:18:07.578 -07 000000459 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:18:07.628 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 1125912736, 0x0, 418435064) end. Duration was 390 ms.
17-03-17 18:18:07.628 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 18:18:07.628 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:18:07.628 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 1090490472, 0x0, 391868352) end. Duration was 394 ms.
17-03-17 18:18:07.628 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 18:18:07.628 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:18:07.628 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:18:07.638 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:18:07.638 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-17 18:18:07.638 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 407 ms.
17-03-17 18:18:07.738 -07 000000502 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:18:07.738 -07 000000382 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 197 ms to get response, and 202 ms overall
17-03-17 18:18:07.948 -07 000000502 INF: FPGA: Recv YMVTILE
17-03-17 18:18:07.948 -07 000000459 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-17 18:18:07.988 -07 000000459 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:18:07.988 -07 000000429 INF: FPGA: Recv YRDPOS 131190
17-03-17 18:18:07.998 -07 000000459 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:18:07.998 -07 000000459 INF: Y Motor: Encoder = 131190 = motor step 102492.2 = 64.0576 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:18:07.998 -07 000000459 INF: Y Motor: Position error before settling (table move) = -10 encoder counts (-0.005 mm)
17-03-17 18:18:07.998 -07 000000459 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.838 mm, average velocity = 2.159 mm/sec
17-03-17 18:18:08.948 -07 000000459 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:18:08.948 -07 000000429 INF: FPGA: Recv YRDPOS 131190
17-03-17 18:18:08.958 -07 000000459 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:18:08.958 -07 000000459 INF: Y Motor: Encoder = 131190 = motor step 102492.2 = 64.0576 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:18:08.968 -07 000000459 INF: Y Motor: After move to 64.062607, error = -0.004990, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:18:08.968 -07 000000459 INF: Y Motor: Position error after settling (table move) = -10 encoder counts (-0.005 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:18:08.968 -07 000000459 INF: Y Motor: Moved to 64.0576 after 1428 ms (table move)
17-03-17 18:18:08.968 -07 000000448 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138750 mm (DAC = 30310)
17-03-17 18:18:08.968 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:18:08.978 -07 000000382 INF: FPGA: Recv ZSGSRD 30890
17-03-17 18:18:08.978 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 18:18:08.978 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:18:08.978 -07 000000459 INF: FPGA: Recv ZSGSRD 30893
17-03-17 18:18:08.988 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:18:08.988 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:18:08.988 -07 000000429 INF: FPGA: Recv ZSGSRD 30889
17-03-17 18:18:08.998 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:18:08.998 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:18:08.998 -07 000000502 INF: FPGA: Recv ZSGSRD 30893
17-03-17 18:18:09.008 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:18:09.008 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:18:09.008 -07 000000433 INF: FPGA: Recv ZSGSRD 30897
17-03-17 18:18:09.018 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:18:09.018 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:18:09.018 -07 000000429 INF: FPGA: Recv ZSGSRD 30886
17-03-17 18:18:09.028 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:18:09.028 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:18:09.028 -07 000000433 INF: FPGA: Recv ZSGSRD 30880
17-03-17 18:18:09.038 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:18:09.038 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:18:09.038 -07 000000424 INF: FPGA: Recv ZSGSRD 30891
17-03-17 18:18:09.048 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:18:09.048 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:18:09.048 -07 000000433 INF: FPGA: Recv ZSGSRD 30885
17-03-17 18:18:09.058 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:18:09.058 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:18:09.058 -07 000000424 INF: FPGA: Recv ZSGSRD 30890
17-03-17 18:18:09.068 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:18:09.068 -07 000000448 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:18:09.068 -07 000000433 INF: FPGA: Recv ZPIEZORD 26710
17-03-17 18:18:09.078 -07 000000448 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:18:09.078 -07 000000448 INF: Z Motor: Piezo is near 37.1 V (nominally 0 to 100 V), expect near 46.3 V, since DAC is at 4.625 V. Piezo Error = -9.2 V.
17-03-17 18:18:09.078 -07 000000448 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.8 um, Read 10 ADC samples: Avg = 30889 (-138.0 uncal um), Error = 0.8 uncal um, Median = 30890 (-138.0 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 30880 (-137.9 uncal um), Max = 30897 (-138.0 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 18:18:09.078 -07 000000448 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30889, posNoise = 8, negNoise = 9
17-03-17 18:18:09.078 -07 000000448 INF: Z Motor: After move to -0.138750, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:18:09.078 -07 000000448 INF: Z Motor: Settle wait time = 1431 ms, measure time = 101 ms (allowed 150 ms), total time = 1532 ms
17-03-17 18:18:09.078 -07 000000448 INF: Z Motor: Waiting extra 49 ms after reading position to reach expected total of 150 ms
17-03-17 18:18:09.128 -07 000000448 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1699 ms
17-03-17 18:18:09.128 -07 000000448 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:18:09.128 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:18:09.128 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:18:09.128 -07 000000433 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:18:09.128 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:18:09.128 -07 000000429 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:18:09.128 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:18:09.128 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:18:09.128 -07 000000429 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:18:09.138 -07 000000429 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 18:18:09.138 -07 000000429 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:18:09.148 -07 000000429 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 18:18:09.148 -07 000000429 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms.
17-03-17 18:18:09.148 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:18:09.198 -07 000000541 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:18:09.398 -07 000000424 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:18:09.398 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:18:09.398 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:18:09.398 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-17 18:18:09.438 -07 000000431 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:18:09.438 -07 000000382 INF: FPGA: Recv CAMSNAP
17-03-17 18:18:09.438 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 281 ms to get response, and 285 ms overall
17-03-17 18:18:09.528 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 18:18:09.528 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:18:09.528 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 18:18:09.528 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 130 ms.
17-03-17 18:18:09.538 -07 000000429 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:18:09.538 -07 000000433 INF: Autofocus start
17-03-17 18:18:09.538 -07 000000433 INF: MeasureProfile start
17-03-17 18:18:09.538 -07 000000424 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:18:09.548 -07 000000429 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:18:09.548 -07 000000429 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:18:09.548 -07 000000433 INF: MeasureProfile done
17-03-17 18:18:09.548 -07 000000433 INF: X=-48  Z correction [um]=-0.2370583
17-03-17 18:18:09.548 -07 000000433 INF: Autofocus finished
17-03-17 18:18:09.748 -07 000000424 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:18:09.748 -07 000000429 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:18:09.748 -07 000000610 INF: ------------ Scan Snapping tile 6 at Y-position 64.0576171875, Z-position -0.138760840857989. ----------
17-03-17 18:18:09.748 -07 000000610 INF: Cycle	11	Tile	6	Exposure Settings		A	392	G	188	T	188	C	392
17-03-17 18:18:09.758 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28770, sync = True, waitForSettling = True)
17-03-17 18:18:09.758 -07 000000610 INF: Z Motor: Moving to -0.131701 mm, started at -0.138761 mm, distance = 7.06 um
17-03-17 18:18:09.758 -07 000000610 INF: FPGA: Xmit ZDACW 28770\n [Z Motor]
17-03-17 18:18:09.758 -07 000000459 INF: FPGA: Recv ZDACW
17-03-17 18:18:09.768 -07 000000610 INF: FPGA: 'ZDACW 28770' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:18:09.768 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:18:09.768 -07 000000429 INF: FPGA: Recv ZDACR 28770
17-03-17 18:18:09.778 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:18:09.778 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:18:09.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:18:09.928 -07 000000429 INF: FPGA: Recv ZSGSRD 29793
17-03-17 18:18:09.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:18:09.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:18:09.938 -07 000000448 INF: FPGA: Recv ZSGSRD 29785
17-03-17 18:18:09.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:18:09.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:18:09.948 -07 000000459 INF: FPGA: Recv ZSGSRD 29790
17-03-17 18:18:09.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:18:09.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:18:09.958 -07 000000448 INF: FPGA: Recv ZSGSRD 29791
17-03-17 18:18:09.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:18:09.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:18:09.968 -07 000000431 INF: FPGA: Recv ZSGSRD 29790
17-03-17 18:18:09.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:18:09.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:18:09.978 -07 000000459 INF: FPGA: Recv ZSGSRD 29790
17-03-17 18:18:09.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:18:09.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:18:09.988 -07 000000429 INF: FPGA: Recv ZSGSRD 29793
17-03-17 18:18:09.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:18:09.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:18:09.998 -07 000000448 INF: FPGA: Recv ZSGSRD 29785
17-03-17 18:18:10.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:18:10.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:18:10.008 -07 000000429 INF: FPGA: Recv ZSGSRD 29792
17-03-17 18:18:10.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:18:10.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:18:10.018 -07 000000448 INF: FPGA: Recv ZSGSRD 29797
17-03-17 18:18:10.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:18:10.028 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:18:10.028 -07 000000459 INF: FPGA: Recv ZPIEZORD 25270
17-03-17 18:18:10.038 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:18:10.038 -07 000000610 INF: Z Motor: Piezo is near 34.0 V (nominally 0 to 100 V), expect near 43.9 V, since DAC is at 4.390 V. Piezo Error = -9.9 V.
17-03-17 18:18:10.038 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.7 um, Read 10 ADC samples: Avg = 29791 (-130.9 uncal um), Error = 0.8 uncal um, Median = 29790 (-130.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29785 (-130.9 uncal um), Max = 29797 (-131.0 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 18:18:10.038 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29791, posNoise = 6, negNoise = 6
17-03-17 18:18:10.038 -07 000000610 INF: Z Motor: After move to -0.131701, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:18:10.038 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 18:18:10.038 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:18:10.038 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:18:10.038 -07 000000433 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:18:10.038 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:18:10.038 -07 000000541 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:18:10.038 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:18:10.038 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:18:10.038 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:18:10.038 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:18:10.038 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:18:10.038 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:18:10.038 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:18:10.048 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 18:18:10.048 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:18:10.048 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 18:18:10.048 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:18:10.058 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 18:18:10.058 -07 000000541 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 18:18:10.058 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 18:18:10.058 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 18:18:10.058 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 392 392 188 188 28947 150\n [Camera]
17-03-17 18:18:10.258 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:18:10.658 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 584
17-03-17 18:18:10.658 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 584
17-03-17 18:18:10.658 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:18:10.658 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 584
17-03-17 18:18:10.658 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 584
17-03-17 18:18:10.658 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:18:10.658 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:18:10.658 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-17 18:18:10.658 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:18:10.658 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 1055068208, 0x0, 418435064) start.
17-03-17 18:18:10.848 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28947 777
17-03-17 18:18:10.998 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP turning grn on 927
17-03-17 18:18:11.058 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 396 ms.
17-03-17 18:18:11.058 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 18:18:11.058 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:18:11.058 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 1055068208, 0x0, 418435064) end. Duration was 394 ms.
17-03-17 18:18:11.058 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 18:18:11.058 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:18:11.058 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:18:11.058 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-17 18:18:11.068 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 18:18:11.068 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-17 18:18:11.188 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1115
17-03-17 18:18:11.188 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1115
17-03-17 18:18:11.188 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:18:11.188 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:18:11.188 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 18:18:11.188 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1115
17-03-17 18:18:11.188 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1115
17-03-17 18:18:11.188 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:18:11.188 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:18:11.188 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 2485095640, 0x0, 418435064) start.
17-03-17 18:18:11.378 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP 1308
17-03-17 18:18:11.378 -07 000000569 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:18:11.378 -07 000000610 INF: FPGA: 'CAMDBLSNAP 392 392 188 188 28947 150' command took 2 ms to send, 1304 ms to get response, and 1315 ms overall
17-03-17 18:18:11.378 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 18:18:11.378 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 7 at Y-position 64.0576171875, Z-Position -0.131707055926336. ------
17-03-17 18:18:11.378 -07 000000433 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:18:11.378 -07 000000382 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.8926 mm, moving Z to -0.13820 mm
17-03-17 18:18:11.388 -07 000000382 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:18:11.388 -07 000000431 INF: Y Motor: Entering MoveAbsStepped (target = 103828 steps, sync = True, waitForSettling = True)
17-03-17 18:18:11.388 -07 000000431 INF: Y Motor: Moving to 64.8926 mm, started at 64.0576 mm, delta = 0.8350 mm
17-03-17 18:18:11.388 -07 000000429 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:18:11.388 -07 000000433 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 3 ms to get response, and 3 ms overall
17-03-17 18:18:11.388 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:18:11.388 -07 000000569 INF: Z Motor: Entering MoveAbsStepped (DAC = 30190, sync = True, waitForSettling = False)
17-03-17 18:18:11.388 -07 000000569 INF: Z Motor: Moving to -0.138201 mm, started at -0.131707 mm, distance = -6.49 um
17-03-17 18:18:11.388 -07 000000627 INF: FPGA: Recv YRDPOS 131191
17-03-17 18:18:11.398 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:18:11.398 -07 000000431 INF: Y Motor: Encoder = 131191 = motor step 102493.0 = 64.0581 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:18:11.398 -07 000000433 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:18:11.398 -07 000000431 INF: Y Motor: Last commanded position = 64.0626 mm (102500.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:18:11.398 -07 000000431 INF: Y Motor: Moving 1335 steps-10
17-03-17 18:18:11.408 -07 000000569 INF: FPGA: Xmit ZDACW 30190\n [Z Motor]
17-03-17 18:18:11.408 -07 000000486 INF: FPGA: Recv ZDACW
17-03-17 18:18:11.418 -07 000000569 INF: FPGA: 'ZDACW 30190' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-17 18:18:11.418 -07 000000431 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:18:11.428 -07 000000569 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:18:11.428 -07 000000486 INF: FPGA: Recv ZDACR 30190
17-03-17 18:18:11.438 -07 000000569 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 18:18:11.438 -07 000000569 INF: Z Motor: MoveAbsStepped took 46 ms (did NOT wait for settling yet))
17-03-17 18:18:11.578 -07 000000429 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:18:11.578 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 10. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=93, R2=102, Total=195. Warn if over 250 bubbles per interval.
17-03-17 18:18:11.598 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 406 ms.
17-03-17 18:18:11.598 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-17 18:18:11.598 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:18:11.598 -07 000000627 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:18:11.598 -07 000000433 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 209 ms overall
17-03-17 18:18:11.598 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 2485095640, 0x0, 418435064) end. Duration was 408 ms.
17-03-17 18:18:11.598 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-17 18:18:11.598 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:18:11.598 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:18:11.608 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 9 ms.
17-03-17 18:18:11.608 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 416 ms.
17-03-17 18:18:11.608 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 420 ms.
17-03-17 18:18:11.778 -07 000000486 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 11, FrontChillerTemperature: 4.009895,
17-03-17 18:18:11.788 -07 000000478 INF: FPGA: Recv YMVTILE
17-03-17 18:18:11.788 -07 000000431 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 394 ms overall
17-03-17 18:18:11.828 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:18:11.828 -07 000000478 INF: FPGA: Recv YRDPOS 132873
17-03-17 18:18:11.838 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:18:11.838 -07 000000431 INF: Y Motor: Encoder = 132873 = motor step 103807.0 = 64.8794 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:18:11.838 -07 000000431 INF: Y Motor: Position error before settling (table move) = -27 encoder counts (-0.013 mm)
17-03-17 18:18:11.838 -07 000000431 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.835 mm, average velocity = 2.119 mm/sec
17-03-17 18:18:12.788 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:18:12.788 -07 000000478 INF: FPGA: Recv YRDPOS 132873
17-03-17 18:18:12.798 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:18:12.798 -07 000000431 INF: Y Motor: Encoder = 132873 = motor step 103807.0 = 64.8794 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:18:12.808 -07 000000431 INF: Y Motor: After move to 64.892609, error = -0.013214, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:18:12.818 -07 000000431 INF: Y Motor: Position error after settling (table move) = -27 encoder counts (-0.013 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:18:12.818 -07 000000431 INF: Y Motor: Moved to 64.8794 after 1427 ms (table move)
17-03-17 18:18:12.818 -07 000000382 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138201 mm (DAC = 30190)
17-03-17 18:18:12.818 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:18:12.818 -07 000000541 INF: FPGA: Recv ZSGSRD 30810
17-03-17 18:18:12.828 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 18:18:12.828 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:18:12.828 -07 000000478 INF: FPGA: Recv ZSGSRD 30795
17-03-17 18:18:12.838 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:18:12.838 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:18:12.838 -07 000000431 INF: FPGA: Recv ZSGSRD 30803
17-03-17 18:18:12.848 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:18:12.848 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:18:12.848 -07 000000478 INF: FPGA: Recv ZSGSRD 30806
17-03-17 18:18:12.858 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:18:12.858 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:18:12.858 -07 000000486 INF: FPGA: Recv ZSGSRD 30809
17-03-17 18:18:12.868 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:18:12.868 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:18:12.868 -07 000000502 INF: FPGA: Recv ZSGSRD 30809
17-03-17 18:18:12.878 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:18:12.878 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:18:12.878 -07 000000541 INF: FPGA: Recv ZSGSRD 30808
17-03-17 18:18:12.888 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:18:12.888 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:18:12.888 -07 000000433 INF: FPGA: Recv ZSGSRD 30797
17-03-17 18:18:12.898 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:18:12.898 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:18:12.898 -07 000000459 INF: FPGA: Recv ZSGSRD 30803
17-03-17 18:18:12.908 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:18:12.908 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:18:12.908 -07 000000502 INF: FPGA: Recv ZSGSRD 30802
17-03-17 18:18:12.918 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:18:12.918 -07 000000382 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:18:12.918 -07 000000431 INF: FPGA: Recv ZPIEZORD 26654
17-03-17 18:18:12.928 -07 000000382 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:18:12.928 -07 000000382 INF: Z Motor: Piezo is near 36.9 V (nominally 0 to 100 V), expect near 46.1 V, since DAC is at 4.607 V. Piezo Error = -9.1 V.
17-03-17 18:18:12.928 -07 000000382 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.2 um, Read 10 ADC samples: Avg = 30804 (-137.4 uncal um), Error = 0.8 uncal um, Median = 30804 (-137.4 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 30795 (-137.4 uncal um), Max = 30810 (-137.5 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 18:18:12.928 -07 000000382 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30804, posNoise = 6, negNoise = 9
17-03-17 18:18:12.928 -07 000000382 INF: Z Motor: After move to -0.138201, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:18:12.928 -07 000000382 INF: Z Motor: Settle wait time = 1430 ms, measure time = 106 ms (allowed 150 ms), total time = 1536 ms
17-03-17 18:18:12.928 -07 000000382 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-17 18:18:12.978 -07 000000382 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1590 ms
17-03-17 18:18:12.978 -07 000000382 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:18:12.978 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:18:12.978 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:18:12.978 -07 000000486 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:18:12.978 -07 000000448 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:18:12.978 -07 000000541 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:18:12.978 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:18:12.978 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:18:12.978 -07 000000541 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:18:12.988 -07 000000541 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:18:12.988 -07 000000541 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:18:12.998 -07 000000541 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 18:18:12.998 -07 000000541 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-17 18:18:12.998 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:18:13.048 -07 000000502 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:18:13.248 -07 000000502 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:18:13.248 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:18:13.248 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:18:13.248 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2520517904, 0x0, 559484976) start.
17-03-17 18:18:13.288 -07 000000431 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:18:13.288 -07 000000459 INF: FPGA: Recv CAMSNAP
17-03-17 18:18:13.288 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 282 ms to get response, and 285 ms overall
17-03-17 18:18:13.378 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2520517904, 0x0, 559484976) end. Duration was 128 ms.
17-03-17 18:18:13.378 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:18:13.378 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 18:18:13.378 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 130 ms.
17-03-17 18:18:13.388 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:18:13.388 -07 000000459 INF: Autofocus start
17-03-17 18:18:13.388 -07 000000459 INF: MeasureProfile start
17-03-17 18:18:13.388 -07 000000433 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:18:13.398 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:18:13.398 -07 000000502 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:18:13.398 -07 000000459 INF: MeasureProfile done
17-03-17 18:18:13.398 -07 000000459 INF: X=-16  Z correction [um]=-0.08128808
17-03-17 18:18:13.398 -07 000000459 INF: Autofocus finished
17-03-17 18:18:13.598 -07 000000431 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:18:13.598 -07 000000502 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:18:13.598 -07 000000610 INF: ------------ Scan Snapping tile 7 at Y-position 64.87939453125, Z-position -0.13821478282594. ----------
17-03-17 18:18:13.598 -07 000000610 INF: Cycle	11	Tile	7	Exposure Settings		A	392	G	188	T	188	C	392
17-03-17 18:18:13.608 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28685, sync = True, waitForSettling = True)
17-03-17 18:18:13.608 -07 000000610 INF: Z Motor: Moving to -0.131312 mm, started at -0.138215 mm, distance = 6.90 um
17-03-17 18:18:13.608 -07 000000610 INF: FPGA: Xmit ZDACW 28685\n [Z Motor]
17-03-17 18:18:13.608 -07 000000433 INF: FPGA: Recv ZDACW
17-03-17 18:18:13.618 -07 000000610 INF: FPGA: 'ZDACW 28685' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:18:13.618 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:18:13.618 -07 000000433 INF: FPGA: Recv ZDACR 28685
17-03-17 18:18:13.628 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:18:13.628 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:18:13.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:18:13.778 -07 000000433 INF: FPGA: Recv ZSGSRD 29741
17-03-17 18:18:13.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:18:13.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:18:13.788 -07 000000433 INF: FPGA: Recv ZSGSRD 29728
17-03-17 18:18:13.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:18:13.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:18:13.798 -07 000000433 INF: FPGA: Recv ZSGSRD 29729
17-03-17 18:18:13.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:18:13.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:18:13.808 -07 000000433 INF: FPGA: Recv ZSGSRD 29730
17-03-17 18:18:13.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:18:13.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:18:13.818 -07 000000424 INF: FPGA: Recv ZSGSRD 29729
17-03-17 18:18:13.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:18:13.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:18:13.838 -07 000000478 INF: FPGA: Recv ZSGSRD 29729
17-03-17 18:18:13.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 18:18:13.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:18:13.848 -07 000000502 INF: FPGA: Recv ZSGSRD 29732
17-03-17 18:18:13.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:18:13.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:18:13.868 -07 000000486 INF: FPGA: Recv ZSGSRD 29733
17-03-17 18:18:13.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 18:18:13.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:18:13.878 -07 000000433 INF: FPGA: Recv ZSGSRD 29726
17-03-17 18:18:13.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:18:13.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:18:13.898 -07 000000502 INF: FPGA: Recv ZSGSRD 29729
17-03-17 18:18:13.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 18:18:13.908 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:18:13.908 -07 000000478 INF: FPGA: Recv ZPIEZORD 25220
17-03-17 18:18:13.918 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:18:13.918 -07 000000610 INF: Z Motor: Piezo is near 33.9 V (nominally 0 to 100 V), expect near 43.8 V, since DAC is at 4.377 V. Piezo Error = -9.9 V.
17-03-17 18:18:13.918 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.3 um, Read 10 ADC samples: Avg = 29731 (-130.5 uncal um), Error = 0.8 uncal um, Median = 29729 (-130.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 29726 (-130.5 uncal um), Max = 29741 (-130.6 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 18:18:13.918 -07 000000610 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29731, posNoise = 10, negNoise = 5
17-03-17 18:18:13.918 -07 000000610 INF: Z Motor: After move to -0.131312, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:18:13.918 -07 000000610 INF: Z Motor: MoveAbsStepped took 309 ms)
17-03-17 18:18:13.918 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:18:13.918 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:18:13.918 -07 000000431 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:18:13.918 -07 000000459 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:18:13.918 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:18:13.918 -07 000000541 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:18:13.918 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:18:13.918 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:18:13.918 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 18:18:13.918 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:18:13.918 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:18:13.918 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:18:13.928 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 18:18:13.928 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:18:13.928 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 18:18:13.928 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:18:13.938 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 18:18:13.938 -07 000000459 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 19 ms.
17-03-17 18:18:13.938 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 14 ms.
17-03-17 18:18:13.938 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 18:18:13.938 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 392 392 188 188 28862 150\n [Camera]
17-03-17 18:18:14.138 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP turning red on 193
17-03-17 18:18:14.538 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 584
17-03-17 18:18:14.538 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 584
17-03-17 18:18:14.538 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:18:14.538 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:18:14.538 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 18:18:14.538 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 584
17-03-17 18:18:14.538 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 584
17-03-17 18:18:14.538 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:18:14.538 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:18:14.538 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-17 18:18:14.728 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28862 777
17-03-17 18:18:14.878 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP turning grn on 930
17-03-17 18:18:14.918 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 378 ms.
17-03-17 18:18:14.918 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-17 18:18:14.918 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:18:14.918 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:18:14.918 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 386 ms.
17-03-17 18:18:14.918 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 18:18:14.918 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:18:14.928 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:18:14.928 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-17 18:18:14.928 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 18:18:15.068 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1115
17-03-17 18:18:15.068 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1115
17-03-17 18:18:15.068 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:18:15.068 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:18:15.068 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-17 18:18:15.068 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1115
17-03-17 18:18:15.068 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1115
17-03-17 18:18:15.068 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:18:15.068 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:18:15.068 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 18:18:15.258 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP 1307
17-03-17 18:18:15.258 -07 000000541 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:18:15.258 -07 000000610 INF: FPGA: 'CAMDBLSNAP 392 392 188 188 28862 150' command took 2 ms to send, 1303 ms to get response, and 1314 ms overall
17-03-17 18:18:15.258 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 18:18:15.258 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 8 at Y-position 64.87939453125, Z-Position -0.13132160319783. ------
17-03-17 18:18:15.258 -07 000000382 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:18:15.258 -07 000000433 INF: Y Motor: MoveYZ optimized starting. Moving Y to 65.7226 mm, moving Z to -0.13787 mm
17-03-17 18:18:15.368 -07 000000433 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:18:15.368 -07 000000541 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:18:15.378 -07 000000382 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 111 ms overall
17-03-17 18:18:15.378 -07 000000382 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:18:15.378 -07 000000618 INF: Y Motor: Entering MoveAbsStepped (target = 105156 steps, sync = True, waitForSettling = True)
17-03-17 18:18:15.378 -07 000000618 INF: Y Motor: Moving to 65.7226 mm, started at 64.8794 mm, delta = 0.8432 mm
17-03-17 18:18:15.378 -07 000000429 INF: Z Motor: Entering MoveAbsStepped (DAC = 30118, sync = True, waitForSettling = False)
17-03-17 18:18:15.378 -07 000000429 INF: Z Motor: Moving to -0.137871 mm, started at -0.131322 mm, distance = -6.55 um
17-03-17 18:18:15.388 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:18:15.388 -07 000000626 INF: FPGA: Recv YRDPOS 132874
17-03-17 18:18:15.398 -07 000000429 INF: FPGA: Xmit ZDACW 30118\n [Z Motor]
17-03-17 18:18:15.398 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-17 18:18:15.398 -07 000000618 INF: Y Motor: Encoder = 132874 = motor step 103807.8 = 64.8799 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:18:15.398 -07 000000438 INF: FPGA: Recv ZDACW
17-03-17 18:18:15.398 -07 000000618 INF: Y Motor: Last commanded position = 64.8926 mm (103828.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:18:15.398 -07 000000618 INF: Y Motor: Moving 1348 steps-27
17-03-17 18:18:15.408 -07 000000429 INF: FPGA: 'ZDACW 30118' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-17 18:18:15.408 -07 000000618 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:18:15.418 -07 000000429 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:18:15.418 -07 000000627 INF: FPGA: Recv ZDACR 30118
17-03-17 18:18:15.428 -07 000000429 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 18:18:15.428 -07 000000429 INF: Z Motor: MoveAbsStepped took 46 ms (did NOT wait for settling yet))
17-03-17 18:18:15.468 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 402 ms.
17-03-17 18:18:15.468 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-17 18:18:15.468 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:18:15.468 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 405 ms.
17-03-17 18:18:15.468 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-17 18:18:15.468 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:18:15.478 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 18:18:15.478 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 9 ms.
17-03-17 18:18:15.478 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 415 ms.
17-03-17 18:18:15.488 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 416 ms.
17-03-17 18:18:15.578 -07 000000438 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:18:15.578 -07 000000382 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 194 ms to get response, and 203 ms overall
17-03-17 18:18:15.788 -07 000000482 INF: FPGA: Recv YMVTILE
17-03-17 18:18:15.788 -07 000000618 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 370 ms to get response, and 386 ms overall
17-03-17 18:18:15.818 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:18:15.818 -07 000000459 INF: FPGA: Recv YRDPOS 134584
17-03-17 18:18:15.828 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:18:15.828 -07 000000618 INF: Y Motor: Encoder = 134584 = motor step 105143.8 = 65.7148 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:18:15.828 -07 000000618 INF: Y Motor: Position error before settling (table move) = -16 encoder counts (-0.008 mm)
17-03-17 18:18:15.828 -07 000000618 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 386 ms, distance = 0.843 mm, average velocity = 2.184 mm/sec
17-03-17 18:18:16.578 -07 000000424 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:18:16.578 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 10. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=93, R2=102, Total=195. Warn if over 250 bubbles per interval.
17-03-17 18:18:16.778 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:18:16.778 -07 000000382 INF: FPGA: Recv YRDPOS 134584
17-03-17 18:18:16.788 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:18:16.788 -07 000000618 INF: Y Motor: Encoder = 134584 = motor step 105143.8 = 65.7148 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:18:16.808 -07 000000618 INF: Y Motor: After move to 65.722610, error = -0.007767, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:18:16.808 -07 000000618 INF: Y Motor: Position error after settling (table move) = -16 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:18:16.808 -07 000000618 INF: Y Motor: Moved to 65.7148 after 1427 ms (table move)
17-03-17 18:18:16.808 -07 000000433 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137871 mm (DAC = 30118)
17-03-17 18:18:16.808 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:18:16.808 -07 000000459 INF: FPGA: Recv ZSGSRD 30757
17-03-17 18:18:16.818 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 18:18:16.828 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:18:16.828 -07 000000424 INF: FPGA: Recv ZSGSRD 30747
17-03-17 18:18:16.838 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 18:18:16.838 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:18:16.838 -07 000000512 INF: FPGA: Recv ZSGSRD 30753
17-03-17 18:18:16.848 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:18:16.848 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:18:16.848 -07 000000626 INF: FPGA: Recv ZSGSRD 30758
17-03-17 18:18:16.858 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:18:16.858 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:18:16.858 -07 000000415 INF: FPGA: Recv ZSGSRD 30752
17-03-17 18:18:16.868 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:18:16.868 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:18:16.868 -07 000000424 INF: FPGA: Recv ZSGSRD 30757
17-03-17 18:18:16.878 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:18:16.878 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:18:16.878 -07 000000482 INF: FPGA: Recv ZSGSRD 30755
17-03-17 18:18:16.888 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:18:16.888 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:18:16.888 -07 000000626 INF: FPGA: Recv ZSGSRD 30751
17-03-17 18:18:16.898 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:18:16.898 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:18:16.898 -07 000000382 INF: FPGA: Recv ZSGSRD 30750
17-03-17 18:18:16.908 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:18:16.908 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:18:16.908 -07 000000561 INF: FPGA: Recv ZSGSRD 30752
17-03-17 18:18:16.918 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:18:16.918 -07 000000433 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:18:16.918 -07 000000502 INF: FPGA: Recv ZPIEZORD 26644
17-03-17 18:18:16.928 -07 000000433 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:18:16.928 -07 000000433 INF: Z Motor: Piezo is near 36.9 V (nominally 0 to 100 V), expect near 46.0 V, since DAC is at 4.596 V. Piezo Error = -9.0 V.
17-03-17 18:18:16.928 -07 000000433 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.9 um, Read 10 ADC samples: Avg = 30753 (-137.1 uncal um), Error = 0.8 uncal um, Median = 30752 (-137.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 30747 (-137.1 uncal um), Max = 30758 (-137.1 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 18:18:16.928 -07 000000433 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30753, posNoise = 5, negNoise = 6
17-03-17 18:18:16.928 -07 000000433 INF: Z Motor: After move to -0.137871, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:18:16.928 -07 000000433 INF: Z Motor: Settle wait time = 1431 ms, measure time = 116 ms (allowed 150 ms), total time = 1547 ms
17-03-17 18:18:16.928 -07 000000433 INF: Z Motor: Waiting extra 34 ms after reading position to reach expected total of 150 ms
17-03-17 18:18:16.968 -07 000000433 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1701 ms
17-03-17 18:18:16.968 -07 000000433 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:18:16.968 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:18:16.968 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:18:16.968 -07 000000431 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:18:16.968 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:18:16.968 -07 000000486 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:18:16.968 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:18:16.978 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:18:16.978 -07 000000486 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:18:16.978 -07 000000486 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:18:16.978 -07 000000486 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:18:16.988 -07 000000486 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 9 ms.
17-03-17 18:18:16.988 -07 000000486 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 13 ms.
17-03-17 18:18:16.988 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:18:17.028 -07 000000502 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:18:17.138 -07 000000541 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 11, FrontChillerTemperature: 3.99219,
17-03-17 18:18:17.228 -07 000000478 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:18:17.228 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:18:17.228 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:18:17.238 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-17 18:18:17.268 -07 000000415 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:18:17.268 -07 000000486 INF: FPGA: Recv CAMSNAP
17-03-17 18:18:17.268 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 279 ms to get response, and 284 ms overall
17-03-17 18:18:17.348 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 18:18:17.348 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:18:17.348 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 18:18:17.348 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-17 18:18:17.368 -07 000000429 INF: Autofocus start
17-03-17 18:18:17.368 -07 000000429 INF: MeasureProfile start
17-03-17 18:18:17.368 -07 000000618 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:18:17.368 -07 000000626 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:18:17.378 -07 000000618 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:18:17.378 -07 000000618 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:18:17.378 -07 000000429 INF: MeasureProfile done
17-03-17 18:18:17.378 -07 000000429 INF: X=32  Z correction [um]=0.1299841
17-03-17 18:18:17.378 -07 000000429 INF: Autofocus finished
17-03-17 18:18:17.578 -07 000000382 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:18:17.578 -07 000000618 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 204 ms overall
17-03-17 18:18:17.578 -07 000000610 INF: ------------ Scan Snapping tile 8 at Y-position 65.71484375, Z-position -0.13788714800671. ----------
17-03-17 18:18:17.578 -07 000000610 INF: Cycle	11	Tile	8	Exposure Settings		A	392	G	188	T	188	C	392
17-03-17 18:18:17.588 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28659, sync = True, waitForSettling = True)
17-03-17 18:18:17.588 -07 000000610 INF: Z Motor: Moving to -0.131192 mm, started at -0.137887 mm, distance = 6.69 um
17-03-17 18:18:17.588 -07 000000610 INF: FPGA: Xmit ZDACW 28659\n [Z Motor]
17-03-17 18:18:17.588 -07 000000448 INF: FPGA: Recv ZDACW
17-03-17 18:18:17.598 -07 000000610 INF: FPGA: 'ZDACW 28659' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:18:17.598 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:18:17.598 -07 000000415 INF: FPGA: Recv ZDACR 28659
17-03-17 18:18:17.608 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:18:17.608 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:18:17.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:18:17.758 -07 000000561 INF: FPGA: Recv ZSGSRD 29714
17-03-17 18:18:17.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:18:17.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:18:17.768 -07 000000486 INF: FPGA: Recv ZSGSRD 29712
17-03-17 18:18:17.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:18:17.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:18:17.778 -07 000000459 INF: FPGA: Recv ZSGSRD 29715
17-03-17 18:18:17.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:18:17.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:18:17.788 -07 000000438 INF: FPGA: Recv ZSGSRD 29712
17-03-17 18:18:17.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:18:17.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:18:17.798 -07 000000627 INF: FPGA: Recv ZSGSRD 29711
17-03-17 18:18:17.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:18:17.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:18:17.808 -07 000000569 INF: FPGA: Recv ZSGSRD 29716
17-03-17 18:18:17.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:18:17.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:18:17.818 -07 000000482 INF: FPGA: Recv ZSGSRD 29710
17-03-17 18:18:17.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:18:17.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:18:17.828 -07 000000424 INF: FPGA: Recv ZSGSRD 29713
17-03-17 18:18:17.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:18:17.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:18:17.838 -07 000000433 INF: FPGA: Recv ZSGSRD 29710
17-03-17 18:18:17.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:18:17.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:18:17.848 -07 000000486 INF: FPGA: Recv ZSGSRD 29716
17-03-17 18:18:17.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:18:17.858 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:18:17.858 -07 000000415 INF: FPGA: Recv ZPIEZORD 25293
17-03-17 18:18:17.868 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:18:17.868 -07 000000610 INF: Z Motor: Piezo is near 34.0 V (nominally 0 to 100 V), expect near 43.7 V, since DAC is at 4.373 V. Piezo Error = -9.7 V.
17-03-17 18:18:17.868 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.2 um, Read 10 ADC samples: Avg = 29713 (-130.4 uncal um), Error = 0.8 uncal um, Median = 29712 (-130.4 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 29710 (-130.4 uncal um), Max = 29716 (-130.4 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 18:18:17.868 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29713, posNoise = 3, negNoise = 3
17-03-17 18:18:17.868 -07 000000610 INF: Z Motor: After move to -0.131192, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:18:17.868 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 18:18:17.868 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:18:17.868 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:18:17.868 -07 000000627 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:18:17.868 -07 000000438 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:18:17.868 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:18:17.868 -07 000000486 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:18:17.868 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:18:17.868 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:18:17.868 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 18:18:17.868 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:18:17.868 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:18:17.868 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:18:17.878 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 18:18:17.878 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:18:17.878 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 18:18:17.878 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:18:17.878 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 18:18:17.878 -07 000000486 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 18:18:17.878 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 18:18:17.888 -07 000000438 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 18:18:17.888 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 392 392 188 188 28836 150\n [Camera]
17-03-17 18:18:18.088 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:18:18.478 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 586
17-03-17 18:18:18.478 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 586
17-03-17 18:18:18.478 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:18:18.488 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 586
17-03-17 18:18:18.488 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 586
17-03-17 18:18:18.488 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:18:18.488 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:18:18.488 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-17 18:18:18.488 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:18:18.488 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 1055068208, 0x0, 418435064) start.
17-03-17 18:18:18.668 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28836 777
17-03-17 18:18:18.818 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning grn on 927
17-03-17 18:18:18.858 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 376 ms.
17-03-17 18:18:18.858 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-17 18:18:18.858 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:18:18.858 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 1055068208, 0x0, 418435064) end. Duration was 372 ms.
17-03-17 18:18:18.858 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 373 ms.
17-03-17 18:18:18.858 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:18:18.868 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 18:18:18.868 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 18:18:18.868 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 18:18:18.878 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 18:18:19.008 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1115
17-03-17 18:18:19.148 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1115
17-03-17 18:18:19.148 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1115
17-03-17 18:18:19.148 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1115
17-03-17 18:18:19.148 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:18:19.148 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:18:19.158 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:18:19.158 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 1125912736, 0x0, 418435064) start.
17-03-17 18:18:19.158 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:18:19.158 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 1090490472, 0x0, 391868352) start.
17-03-17 18:18:19.198 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP 1308
17-03-17 18:18:19.198 -07 000000478 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:18:19.198 -07 000000610 INF: FPGA: 'CAMDBLSNAP 392 392 188 188 28836 150' command took 2 ms to send, 1308 ms to get response, and 1314 ms overall
17-03-17 18:18:19.318 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 18:18:19.318 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 9 at Y-position 65.71484375, Z-Position -0.131205967379278. ------
17-03-17 18:18:19.328 -07 000000431 INF: Y Motor: MoveYZ optimized starting. Moving Y to 66.5526 mm, moving Z to -0.13757 mm
17-03-17 18:18:19.328 -07 000000431 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:18:19.328 -07 000000512 INF: Z Motor: Entering MoveAbsStepped (DAC = 30052, sync = True, waitForSettling = False)
17-03-17 18:18:19.328 -07 000000512 INF: Z Motor: Moving to -0.137569 mm, started at -0.131206 mm, distance = -6.36 um
17-03-17 18:18:19.328 -07 000000478 INF: Y Motor: Entering MoveAbsStepped (target = 106484 steps, sync = True, waitForSettling = True)
17-03-17 18:18:19.328 -07 000000478 INF: Y Motor: Moving to 66.5526 mm, started at 65.7148 mm, delta = 0.8378 mm
17-03-17 18:18:19.348 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:18:19.348 -07 000000561 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:18:19.358 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-17 18:18:19.358 -07 000000512 INF: FPGA: Xmit ZDACW 30052\n [Z Motor]
17-03-17 18:18:19.358 -07 000000438 INF: FPGA: Recv ZDACW
17-03-17 18:18:19.368 -07 000000478 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:18:19.368 -07 000000512 INF: FPGA: 'ZDACW 30052' command took 0 ms to send, 0 ms to get response, and 34 ms overall
17-03-17 18:18:19.368 -07 000000438 INF: FPGA: Recv YRDPOS 134584
17-03-17 18:18:19.378 -07 000000478 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 43 ms overall
17-03-17 18:18:19.378 -07 000000478 INF: Y Motor: Encoder = 134584 = motor step 105143.8 = 65.7148 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:18:19.378 -07 000000478 INF: Y Motor: Last commanded position = 65.7226 mm (105156.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:18:19.378 -07 000000478 INF: Y Motor: Moving 1340 steps-16
17-03-17 18:18:19.388 -07 000000502 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:18:19.398 -07 000000512 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:18:19.398 -07 000000561 INF: FPGA: Recv ZDACR 30052
17-03-17 18:18:19.408 -07 000000478 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:18:19.408 -07 000000512 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 39 ms overall
17-03-17 18:18:19.408 -07 000000512 INF: Z Motor: MoveAbsStepped took 75 ms (did NOT wait for settling yet))
17-03-17 18:18:19.538 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 1125912736, 0x0, 418435064) end. Duration was 381 ms.
17-03-17 18:18:19.538 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-17 18:18:19.538 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:18:19.538 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 1090490472, 0x0, 391868352) end. Duration was 380 ms.
17-03-17 18:18:19.538 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 18:18:19.538 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:18:19.548 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 18:18:19.548 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 18:18:19.548 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 18:18:19.548 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-17 18:18:19.588 -07 000000438 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:18:19.588 -07 000000502 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 232 ms overall
17-03-17 18:18:19.778 -07 000000512 INF: FPGA: Recv YMVTILE
17-03-17 18:18:19.778 -07 000000478 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 407 ms overall
17-03-17 18:18:19.818 -07 000000478 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:18:19.828 -07 000000618 INF: FPGA: Recv YRDPOS 136273
17-03-17 18:18:19.828 -07 000000478 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 18:18:19.828 -07 000000478 INF: Y Motor: Encoder = 136273 = motor step 106463.3 = 66.5396 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:18:19.828 -07 000000478 INF: Y Motor: Position error before settling (table move) = -27 encoder counts (-0.013 mm)
17-03-17 18:18:19.828 -07 000000478 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 407 ms, distance = 0.838 mm, average velocity = 2.058 mm/sec
17-03-17 18:18:20.778 -07 000000478 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:18:20.778 -07 000000424 INF: FPGA: Recv YRDPOS 136273
17-03-17 18:18:20.788 -07 000000478 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:18:20.788 -07 000000478 INF: Y Motor: Encoder = 136273 = motor step 106463.3 = 66.5396 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:18:20.808 -07 000000478 INF: Y Motor: After move to 66.552605, error = -0.013054, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:18:20.808 -07 000000478 INF: Y Motor: Position error after settling (table move) = -27 encoder counts (-0.013 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:18:20.808 -07 000000478 INF: Y Motor: Moved to 66.5396 after 1476 ms (table move)
17-03-17 18:18:20.808 -07 000000431 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137569 mm (DAC = 30052)
17-03-17 18:18:20.808 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:18:20.808 -07 000000486 INF: FPGA: Recv ZSGSRD 30700
17-03-17 18:18:20.818 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 18:18:20.818 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:18:20.818 -07 000000486 INF: FPGA: Recv ZSGSRD 30705
17-03-17 18:18:20.828 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:18:20.828 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:18:20.828 -07 000000478 INF: FPGA: Recv ZSGSRD 30708
17-03-17 18:18:20.838 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:18:20.838 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:18:20.838 -07 000000486 INF: FPGA: Recv ZSGSRD 30708
17-03-17 18:18:20.848 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:18:20.848 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:18:20.848 -07 000000561 INF: FPGA: Recv ZSGSRD 30707
17-03-17 18:18:20.858 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:18:20.858 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:18:20.858 -07 000000438 INF: FPGA: Recv ZSGSRD 30708
17-03-17 18:18:20.868 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:18:20.868 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:18:20.868 -07 000000561 INF: FPGA: Recv ZSGSRD 30705
17-03-17 18:18:20.878 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:18:20.878 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:18:20.878 -07 000000478 INF: FPGA: Recv ZSGSRD 30705
17-03-17 18:18:20.888 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:18:20.888 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:18:20.888 -07 000000424 INF: FPGA: Recv ZSGSRD 30699
17-03-17 18:18:20.898 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:18:20.898 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:18:20.898 -07 000000512 INF: FPGA: Recv ZSGSRD 30709
17-03-17 18:18:20.908 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:18:20.908 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:18:20.908 -07 000000502 INF: FPGA: Recv ZPIEZORD 26615
17-03-17 18:18:20.918 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:18:20.918 -07 000000431 INF: Z Motor: Piezo is near 36.9 V (nominally 0 to 100 V), expect near 45.9 V, since DAC is at 4.586 V. Piezo Error = -9.0 V.
17-03-17 18:18:20.918 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.6 um, Read 10 ADC samples: Avg = 30705 (-136.8 uncal um), Error = 0.8 uncal um, Median = 30706 (-136.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 30699 (-136.7 uncal um), Max = 30709 (-136.8 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 18:18:20.918 -07 000000431 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30705, posNoise = 4, negNoise = 6
17-03-17 18:18:20.918 -07 000000431 INF: Z Motor: After move to -0.137569, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:18:20.918 -07 000000431 INF: Z Motor: Settle wait time = 1480 ms, measure time = 105 ms (allowed 150 ms), total time = 1585 ms
17-03-17 18:18:20.918 -07 000000431 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 18:18:20.968 -07 000000431 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1637 ms
17-03-17 18:18:20.968 -07 000000431 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:18:20.968 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:18:20.968 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:18:20.968 -07 000000448 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:18:20.968 -07 000000541 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:18:20.968 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:18:20.968 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:18:20.968 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:18:20.968 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:18:20.978 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:18:20.978 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:18:20.978 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 18:18:20.978 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 18:18:20.988 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:18:21.028 -07 000000438 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:18:21.228 -07 000000478 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:18:21.228 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:18:21.228 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:18:21.238 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-17 18:18:21.268 -07 000000502 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:18:21.268 -07 000000627 INF: FPGA: Recv CAMSNAP
17-03-17 18:18:21.268 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 278 ms to get response, and 285 ms overall
17-03-17 18:18:21.348 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 113 ms.
17-03-17 18:18:21.348 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:18:21.348 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 18:18:21.348 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 116 ms.
17-03-17 18:18:21.368 -07 000000424 INF: Autofocus start
17-03-17 18:18:21.368 -07 000000424 INF: MeasureProfile start
17-03-17 18:18:21.368 -07 000000541 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:18:21.368 -07 000000627 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:18:21.378 -07 000000541 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:18:21.378 -07 000000541 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:18:21.378 -07 000000424 INF: MeasureProfile done
17-03-17 18:18:21.378 -07 000000424 INF: X=16  Z correction [um]=0.0530179
17-03-17 18:18:21.378 -07 000000424 INF: Autofocus finished
17-03-17 18:18:21.578 -07 000000618 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:18:21.578 -07 000000541 INF: FPGA: 'FOCMRRIMG' command took 1 ms to send, 195 ms to get response, and 205 ms overall
17-03-17 18:18:21.578 -07 000000429 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:18:21.578 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 10. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=93, R2=102, Total=195. Warn if over 250 bubbles per interval.
17-03-17 18:18:21.588 -07 000000610 INF: ------------ Scan Snapping tile 9 at Y-position 66.53955078125, Z-position -0.137578785823905. ----------
17-03-17 18:18:21.588 -07 000000610 INF: Cycle	11	Tile	9	Exposure Settings		A	392	G	188	T	188	C	392
17-03-17 18:18:21.588 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28576, sync = True, waitForSettling = True)
17-03-17 18:18:21.588 -07 000000610 INF: Z Motor: Moving to -0.130813 mm, started at -0.137579 mm, distance = 6.77 um
17-03-17 18:18:21.588 -07 000000610 INF: FPGA: Xmit ZDACW 28576\n [Z Motor]
17-03-17 18:18:21.588 -07 000000438 INF: FPGA: Recv ZDACW
17-03-17 18:18:21.598 -07 000000610 INF: FPGA: 'ZDACW 28576' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 18:18:21.598 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:18:21.598 -07 000000438 INF: FPGA: Recv ZDACR 28576
17-03-17 18:18:21.608 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:18:21.608 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:18:21.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:18:21.758 -07 000000502 INF: FPGA: Recv ZSGSRD 29648
17-03-17 18:18:21.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:18:21.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:18:21.768 -07 000000561 INF: FPGA: Recv ZSGSRD 29652
17-03-17 18:18:21.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:18:21.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:18:21.778 -07 000000502 INF: FPGA: Recv ZSGSRD 29650
17-03-17 18:18:21.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:18:21.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:18:21.788 -07 000000618 INF: FPGA: Recv ZSGSRD 29658
17-03-17 18:18:21.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:18:21.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:18:21.798 -07 000000448 INF: FPGA: Recv ZSGSRD 29656
17-03-17 18:18:21.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:18:21.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:18:21.808 -07 000000541 INF: FPGA: Recv ZSGSRD 29651
17-03-17 18:18:21.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:18:21.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:18:21.818 -07 000000627 INF: FPGA: Recv ZSGSRD 29653
17-03-17 18:18:21.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:18:21.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:18:21.828 -07 000000618 INF: FPGA: Recv ZSGSRD 29655
17-03-17 18:18:21.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:18:21.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:18:21.838 -07 000000424 INF: FPGA: Recv ZSGSRD 29652
17-03-17 18:18:21.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:18:21.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:18:21.848 -07 000000561 INF: FPGA: Recv ZSGSRD 29655
17-03-17 18:18:21.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:18:21.858 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:18:21.858 -07 000000478 INF: FPGA: Recv ZPIEZORD 25228
17-03-17 18:18:21.868 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:18:21.868 -07 000000610 INF: Z Motor: Piezo is near 33.9 V (nominally 0 to 100 V), expect near 43.6 V, since DAC is at 4.360 V. Piezo Error = -9.7 V.
17-03-17 18:18:21.868 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.8 um, Read 10 ADC samples: Avg = 29653 (-130.0 uncal um), Error = 0.8 uncal um, Median = 29652 (-130.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29648 (-130.0 uncal um), Max = 29658 (-130.1 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 18:18:21.868 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29653, posNoise = 5, negNoise = 5
17-03-17 18:18:21.868 -07 000000610 INF: Z Motor: After move to -0.130813, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:18:21.868 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-17 18:18:21.868 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:18:21.868 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:18:21.868 -07 000000448 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:18:21.868 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:18:21.868 -07 000000541 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:18:21.868 -07 000000438 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:18:21.868 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:18:21.868 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:18:21.868 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:18:21.868 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:18:21.868 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:18:21.868 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:18:21.868 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 18:18:21.868 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:18:21.878 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 18:18:21.878 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:18:21.878 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 18:18:21.878 -07 000000438 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 18:18:21.888 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 18:18:21.888 -07 000000541 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 18:18:21.888 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 392 392 188 188 28753 150\n [Camera]
17-03-17 18:18:22.088 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:18:22.478 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 584
17-03-17 18:18:22.478 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 584
17-03-17 18:18:22.478 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:18:22.478 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 584
17-03-17 18:18:22.478 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 584
17-03-17 18:18:22.488 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:18:22.488 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:18:22.488 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-17 18:18:22.488 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:18:22.488 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1055068208, 0x0, 418435064) start.
17-03-17 18:18:22.498 -07 000000438 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 11, FrontChillerTemperature: 3.966297,
17-03-17 18:18:22.668 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28753 777
17-03-17 18:18:22.818 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP turning grn on 927
17-03-17 18:18:22.858 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1055068208, 0x0, 418435064) end. Duration was 365 ms.
17-03-17 18:18:22.858 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 365 ms.
17-03-17 18:18:22.858 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:18:22.858 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:18:22.858 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 373 ms.
17-03-17 18:18:22.858 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 373 ms.
17-03-17 18:18:22.858 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:18:22.858 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:18:22.868 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 18:18:22.868 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-17 18:18:23.008 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1115
17-03-17 18:18:23.008 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1115
17-03-17 18:18:23.008 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:18:23.008 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:18:23.008 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 18:18:23.008 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1115
17-03-17 18:18:23.008 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1115
17-03-17 18:18:23.008 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:18:23.008 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:18:23.008 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2485095640, 0x0, 418435064) start.
17-03-17 18:18:23.198 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP 1307
17-03-17 18:18:23.198 -07 000000627 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:18:23.198 -07 000000610 INF: FPGA: 'CAMDBLSNAP 392 392 188 188 28753 150' command took 2 ms to send, 1307 ms to get response, and 1314 ms overall
17-03-17 18:18:23.198 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 18:18:23.198 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 10 at Y-position 66.53955078125, Z-Position -0.130820514650773. ------
17-03-17 18:18:23.208 -07 000000429 INF: Y Motor: MoveYZ optimized starting. Moving Y to 67.3826 mm, moving Z to -0.13757 mm
17-03-17 18:18:23.208 -07 000000429 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:18:23.208 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:18:23.208 -07 000000561 INF: Z Motor: Entering MoveAbsStepped (DAC = 30052, sync = True, waitForSettling = False)
17-03-17 18:18:23.208 -07 000000561 INF: Z Motor: Moving to -0.137569 mm, started at -0.130821 mm, distance = -6.75 um
17-03-17 18:18:23.208 -07 000000478 INF: Y Motor: Entering MoveAbsStepped (target = 107812 steps, sync = True, waitForSettling = True)
17-03-17 18:18:23.208 -07 000000478 INF: Y Motor: Moving to 67.3826 mm, started at 66.5396 mm, delta = 0.8431 mm
17-03-17 18:18:23.208 -07 000000512 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:18:23.218 -07 000000561 INF: FPGA: Xmit ZDACW 30052\n [Z Motor]
17-03-17 18:18:23.218 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:18:23.218 -07 000000618 INF: FPGA: Recv ZDACW
17-03-17 18:18:23.228 -07 000000478 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:18:23.228 -07 000000561 INF: FPGA: 'ZDACW 30052' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-17 18:18:23.228 -07 000000627 INF: FPGA: Recv YRDPOS 136274
17-03-17 18:18:23.238 -07 000000431 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:18:23.238 -07 000000478 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-17 18:18:23.238 -07 000000478 INF: Y Motor: Encoder = 136274 = motor step 106464.1 = 66.5400 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:18:23.238 -07 000000478 INF: Y Motor: Last commanded position = 66.5526 mm (106484.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:18:23.238 -07 000000478 INF: Y Motor: Moving 1348 steps-27
17-03-17 18:18:23.248 -07 000000561 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:18:23.248 -07 000000438 INF: FPGA: Recv ZDACR 30052
17-03-17 18:18:23.258 -07 000000561 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:18:23.258 -07 000000561 INF: Z Motor: MoveAbsStepped took 45 ms (did NOT wait for settling yet))
17-03-17 18:18:23.258 -07 000000478 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:18:23.388 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2485095640, 0x0, 418435064) end. Duration was 376 ms.
17-03-17 18:18:23.388 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-17 18:18:23.388 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:18:23.388 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 381 ms.
17-03-17 18:18:23.388 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 18:18:23.388 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:18:23.388 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:18:23.398 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 18:18:23.398 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 18:18:23.408 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 18:18:23.438 -07 000000438 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:18:23.438 -07 000000431 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 18:18:23.628 -07 000000459 INF: FPGA: Recv YMVTILE
17-03-17 18:18:23.628 -07 000000478 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 391 ms overall
17-03-17 18:18:23.688 -07 000000478 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:18:23.688 -07 000000486 INF: FPGA: Recv YRDPOS 137979
17-03-17 18:18:23.698 -07 000000478 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 18:18:23.698 -07 000000478 INF: Y Motor: Encoder = 137979 = motor step 107796.1 = 67.3726 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:18:23.698 -07 000000478 INF: Y Motor: Position error before settling (table move) = -21 encoder counts (-0.010 mm)
17-03-17 18:18:23.698 -07 000000478 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 392 ms, distance = 0.843 mm, average velocity = 2.151 mm/sec
17-03-17 18:18:24.648 -07 000000478 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:18:24.648 -07 000000486 INF: FPGA: Recv YRDPOS 137979
17-03-17 18:18:24.658 -07 000000478 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:18:24.658 -07 000000478 INF: Y Motor: Encoder = 137979 = motor step 107796.1 = 67.3726 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:18:24.678 -07 000000478 INF: Y Motor: After move to 67.382607, error = -0.010048, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:18:24.678 -07 000000478 INF: Y Motor: Position error after settling (table move) = -21 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:18:24.678 -07 000000478 INF: Y Motor: Moved to 67.3726 after 1466 ms (table move)
17-03-17 18:18:24.678 -07 000000429 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137569 mm (DAC = 30052)
17-03-17 18:18:24.678 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:18:24.688 -07 000000478 INF: FPGA: Recv ZSGSRD 30704
17-03-17 18:18:24.688 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 18:18:24.688 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:18:24.688 -07 000000502 INF: FPGA: Recv ZSGSRD 30708
17-03-17 18:18:24.698 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:18:24.698 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:18:24.698 -07 000000448 INF: FPGA: Recv ZSGSRD 30711
17-03-17 18:18:24.708 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:18:24.708 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:18:24.708 -07 000000561 INF: FPGA: Recv ZSGSRD 30698
17-03-17 18:18:24.718 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:18:24.718 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:18:24.718 -07 000000448 INF: FPGA: Recv ZSGSRD 30700
17-03-17 18:18:24.728 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:18:24.728 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:18:24.728 -07 000000433 INF: FPGA: Recv ZSGSRD 30709
17-03-17 18:18:24.738 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:18:24.748 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:18:24.748 -07 000000438 INF: FPGA: Recv ZSGSRD 30705
17-03-17 18:18:24.758 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 18:18:24.768 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:18:24.768 -07 000000459 INF: FPGA: Recv ZSGSRD 30708
17-03-17 18:18:24.778 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 18:18:24.788 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:18:24.788 -07 000000431 INF: FPGA: Recv ZSGSRD 30703
17-03-17 18:18:24.798 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 18:18:24.818 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:18:24.818 -07 000000433 INF: FPGA: Recv ZSGSRD 30707
17-03-17 18:18:24.828 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:18:24.828 -07 000000429 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:18:24.828 -07 000000448 INF: FPGA: Recv ZPIEZORD 26615
17-03-17 18:18:24.838 -07 000000429 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:18:24.838 -07 000000429 INF: Z Motor: Piezo is near 36.9 V (nominally 0 to 100 V), expect near 45.9 V, since DAC is at 4.586 V. Piezo Error = -9.0 V.
17-03-17 18:18:24.838 -07 000000429 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.6 um, Read 10 ADC samples: Avg = 30705 (-136.8 uncal um), Error = 0.8 uncal um, Median = 30706 (-136.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 30698 (-136.7 uncal um), Max = 30711 (-136.8 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 18:18:24.838 -07 000000429 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30705, posNoise = 6, negNoise = 7
17-03-17 18:18:24.838 -07 000000429 INF: Z Motor: After move to -0.137569, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:18:24.838 -07 000000429 INF: Z Motor: Settle wait time = 1472 ms, measure time = 153 ms (allowed 150 ms), total time = 1625 ms
17-03-17 18:18:24.838 -07 000000429 INF: Z Motor: Warning: Actual position measuring time = 153 ms, longer than max expected time of 150 ms
17-03-17 18:18:24.838 -07 000000429 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1628 ms
17-03-17 18:18:24.838 -07 000000429 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:18:24.838 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:18:24.838 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:18:24.838 -07 000000482 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:18:24.848 -07 000000561 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:18:24.848 -07 000000448 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:18:24.848 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:18:24.848 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 18:18:24.848 -07 000000561 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:18:24.848 -07 000000561 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:18:24.848 -07 000000561 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:18:24.858 -07 000000561 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 18:18:24.858 -07 000000561 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-17 18:18:24.858 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:18:24.898 -07 000000482 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:18:25.098 -07 000000478 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:18:25.098 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:18:25.098 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:18:25.098 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2520517904, 0x0, 559484976) start.
17-03-17 18:18:25.148 -07 000000431 INF: FPGA: Recv @CAMSNAP 283
17-03-17 18:18:25.148 -07 000000561 INF: FPGA: Recv CAMSNAP
17-03-17 18:18:25.148 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 281 ms to get response, and 288 ms overall
17-03-17 18:18:25.218 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2520517904, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 18:18:25.218 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:18:25.218 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 18:18:25.218 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 18:18:25.248 -07 000000433 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:18:25.248 -07 000000448 INF: Autofocus start
17-03-17 18:18:25.248 -07 000000448 INF: MeasureProfile start
17-03-17 18:18:25.248 -07 000000459 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:18:25.258 -07 000000433 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:18:25.258 -07 000000433 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:18:25.268 -07 000000448 INF: MeasureProfile done
17-03-17 18:18:25.268 -07 000000448 INF: X=0  Z correction [um]=-0.02394831
17-03-17 18:18:25.268 -07 000000448 INF: Autofocus finished
17-03-17 18:18:25.458 -07 000000431 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:18:25.458 -07 000000433 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:18:25.468 -07 000000610 INF: ------------ Scan Snapping tile 10 at Y-position 67.37255859375, Z-position -0.137578785823905. ----------
17-03-17 18:18:25.468 -07 000000610 INF: Cycle	11	Tile	10	Exposure Settings		A	392	G	188	T	188	C	392
17-03-17 18:18:25.468 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28559, sync = True, waitForSettling = True)
17-03-17 18:18:25.468 -07 000000610 INF: Z Motor: Moving to -0.130735 mm, started at -0.137579 mm, distance = 6.84 um
17-03-17 18:18:25.468 -07 000000610 INF: FPGA: Xmit ZDACW 28559\n [Z Motor]
17-03-17 18:18:25.468 -07 000000459 INF: FPGA: Recv ZDACW
17-03-17 18:18:25.478 -07 000000610 INF: FPGA: 'ZDACW 28559' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 18:18:25.478 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:18:25.478 -07 000000438 INF: FPGA: Recv ZDACR 28559
17-03-17 18:18:25.488 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:18:25.488 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:18:25.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:18:25.638 -07 000000478 INF: FPGA: Recv ZSGSRD 29639
17-03-17 18:18:25.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:18:25.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:18:25.648 -07 000000459 INF: FPGA: Recv ZSGSRD 29642
17-03-17 18:18:25.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:18:25.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:18:25.658 -07 000000459 INF: FPGA: Recv ZSGSRD 29642
17-03-17 18:18:25.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:18:25.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:18:25.668 -07 000000438 INF: FPGA: Recv ZSGSRD 29635
17-03-17 18:18:25.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:18:25.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:18:25.678 -07 000000438 INF: FPGA: Recv ZSGSRD 29644
17-03-17 18:18:25.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:18:25.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:18:25.688 -07 000000448 INF: FPGA: Recv ZSGSRD 29644
17-03-17 18:18:25.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:18:25.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:18:25.698 -07 000000438 INF: FPGA: Recv ZSGSRD 29641
17-03-17 18:18:25.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:18:25.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:18:25.708 -07 000000433 INF: FPGA: Recv ZSGSRD 29644
17-03-17 18:18:25.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:18:25.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:18:25.718 -07 000000433 INF: FPGA: Recv ZSGSRD 29642
17-03-17 18:18:25.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:18:25.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:18:25.728 -07 000000482 INF: FPGA: Recv ZSGSRD 29647
17-03-17 18:18:25.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:18:25.738 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:18:25.738 -07 000000482 INF: FPGA: Recv ZPIEZORD 25222
17-03-17 18:18:25.748 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:18:25.748 -07 000000610 INF: Z Motor: Piezo is near 33.9 V (nominally 0 to 100 V), expect near 43.6 V, since DAC is at 4.358 V. Piezo Error = -9.7 V.
17-03-17 18:18:25.748 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.7 um, Read 10 ADC samples: Avg = 29642 (-130.0 uncal um), Error = 0.8 uncal um, Median = 29642 (-130.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29635 (-129.9 uncal um), Max = 29647 (-130.0 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 18:18:25.748 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29642, posNoise = 5, negNoise = 7
17-03-17 18:18:25.748 -07 000000610 INF: Z Motor: After move to -0.130735, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:18:25.748 -07 000000610 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-17 18:18:25.748 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:18:25.748 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:18:25.748 -07 000000438 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:18:25.748 -07 000000433 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:18:25.748 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:18:25.748 -07 000000431 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:18:25.748 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 18:18:25.748 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:18:25.748 -07 000000478 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:18:25.758 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:18:25.758 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:18:25.758 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:18:25.758 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 18:18:25.758 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:18:25.758 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 18:18:25.758 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:18:25.768 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 18:18:25.768 -07 000000433 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 18:18:25.768 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 18:18:25.768 -07 000000478 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 18:18:25.768 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 392 392 188 188 28736 150\n [Camera]
17-03-17 18:18:25.968 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:18:26.358 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 584
17-03-17 18:18:26.358 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 584
17-03-17 18:18:26.368 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:18:26.368 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:18:26.368 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 18:18:26.368 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 584
17-03-17 18:18:26.368 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 584
17-03-17 18:18:26.368 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:18:26.368 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:18:26.368 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-17 18:18:26.558 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28736 777
17-03-17 18:18:26.578 -07 000000478 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:18:26.578 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 10. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=93, R2=102, Total=195. Warn if over 250 bubbles per interval.
17-03-17 18:18:26.708 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP turning grn on 927
17-03-17 18:18:26.738 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 376 ms.
17-03-17 18:18:26.738 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 18:18:26.738 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:18:26.748 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:18:26.748 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 18:18:26.748 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 377 ms.
17-03-17 18:18:26.748 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-17 18:18:26.748 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:18:26.748 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:18:26.758 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 18:18:26.898 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1115
17-03-17 18:18:26.898 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1115
17-03-17 18:18:26.898 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:18:26.898 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:18:26.898 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-17 18:18:26.898 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1115
17-03-17 18:18:26.898 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1115
17-03-17 18:18:26.898 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:18:26.898 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:18:26.898 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 18:18:27.088 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP 1308
17-03-17 18:18:27.088 -07 000000438 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:18:27.088 -07 000000610 INF: FPGA: 'CAMDBLSNAP 392 392 188 188 28736 150' command took 2 ms to send, 1312 ms to get response, and 1314 ms overall
17-03-17 18:18:27.088 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 18:18:27.088 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 11 at Y-position 67.37255859375, Z-Position -0.130749848317213. ------
17-03-17 18:18:27.088 -07 000000482 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:18:27.088 -07 000000433 INF: Y Motor: MoveYZ optimized starting. Moving Y to 68.2126 mm, moving Z to -0.13669 mm
17-03-17 18:18:27.088 -07 000000433 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:18:27.218 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:18:27.218 -07 000000482 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 124 ms overall
17-03-17 18:18:27.218 -07 000000482 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:18:27.218 -07 000000459 INF: Y Motor: Entering MoveAbsStepped (target = 109140 steps, sync = True, waitForSettling = True)
17-03-17 18:18:27.218 -07 000000459 INF: Y Motor: Moving to 68.2126 mm, started at 67.3726 mm, delta = 0.8400 mm
17-03-17 18:18:27.218 -07 000000438 INF: Z Motor: Entering MoveAbsStepped (DAC = 29860, sync = True, waitForSettling = False)
17-03-17 18:18:27.218 -07 000000438 INF: Z Motor: Moving to -0.136690 mm, started at -0.130750 mm, distance = -5.94 um
17-03-17 18:18:27.228 -07 000000438 INF: FPGA: Xmit ZDACW 29860\n [Z Motor]
17-03-17 18:18:27.228 -07 000000415 INF: FPGA: Recv ZDACW
17-03-17 18:18:27.238 -07 000000459 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:18:27.238 -07 000000438 INF: FPGA: 'ZDACW 29860' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-17 18:18:27.238 -07 000000448 INF: FPGA: Recv YRDPOS 137980
17-03-17 18:18:27.248 -07 000000459 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-17 18:18:27.248 -07 000000459 INF: Y Motor: Encoder = 137980 = motor step 107796.9 = 67.3730 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:18:27.248 -07 000000438 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:18:27.248 -07 000000415 INF: FPGA: Recv ZDACR 29860
17-03-17 18:18:27.248 -07 000000459 INF: Y Motor: Last commanded position = 67.3826 mm (107812.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:18:27.248 -07 000000459 INF: Y Motor: Moving 1343 steps-21
17-03-17 18:18:27.258 -07 000000438 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 18:18:27.258 -07 000000438 INF: Z Motor: MoveAbsStepped took 37 ms (did NOT wait for settling yet))
17-03-17 18:18:27.258 -07 000000459 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:18:27.278 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 377 ms.
17-03-17 18:18:27.278 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-17 18:18:27.278 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:18:27.278 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:18:27.278 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 384 ms.
17-03-17 18:18:27.278 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 18:18:27.278 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:18:27.288 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 18:18:27.288 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 18:18:27.288 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-17 18:18:27.418 -07 000000438 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:18:27.418 -07 000000482 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 194 ms to get response, and 202 ms overall
17-03-17 18:18:27.628 -07 000000569 INF: FPGA: Recv YMVTILE
17-03-17 18:18:27.628 -07 000000459 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 384 ms overall
17-03-17 18:18:27.658 -07 000000459 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:18:27.668 -07 000000448 INF: FPGA: Recv YRDPOS 139685
17-03-17 18:18:27.678 -07 000000459 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:18:27.678 -07 000000459 INF: Y Motor: Encoder = 139685 = motor step 109128.9 = 68.2056 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:18:27.678 -07 000000459 INF: Y Motor: Position error before settling (table move) = -14 encoder counts (-0.007 mm)
17-03-17 18:18:27.678 -07 000000459 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 384 ms, distance = 0.840 mm, average velocity = 2.188 mm/sec
17-03-17 18:18:27.858 -07 000000569 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 11, FrontChillerTemperature: 3.977204,
17-03-17 18:18:28.628 -07 000000459 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:18:28.628 -07 000000438 INF: FPGA: Recv YRDPOS 139685
17-03-17 18:18:28.638 -07 000000459 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:18:28.638 -07 000000459 INF: Y Motor: Encoder = 139685 = motor step 109128.9 = 68.2056 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:18:28.648 -07 000000459 INF: Y Motor: After move to 68.212608, error = -0.007042, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:18:28.648 -07 000000459 INF: Y Motor: Position error after settling (table move) = -14 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:18:28.648 -07 000000459 INF: Y Motor: Moved to 68.2056 after 1435 ms (table move)
17-03-17 18:18:28.658 -07 000000433 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136690 mm (DAC = 29860)
17-03-17 18:18:28.658 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:18:28.658 -07 000000482 INF: FPGA: Recv ZSGSRD 30575
17-03-17 18:18:28.668 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:18:28.668 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:18:28.668 -07 000000459 INF: FPGA: Recv ZSGSRD 30567
17-03-17 18:18:28.678 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:18:28.678 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:18:28.678 -07 000000482 INF: FPGA: Recv ZSGSRD 30569
17-03-17 18:18:28.688 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:18:28.688 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:18:28.688 -07 000000459 INF: FPGA: Recv ZSGSRD 30572
17-03-17 18:18:28.698 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:18:28.698 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:18:28.698 -07 000000482 INF: FPGA: Recv ZSGSRD 30572
17-03-17 18:18:28.708 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:18:28.708 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:18:28.708 -07 000000459 INF: FPGA: Recv ZSGSRD 30561
17-03-17 18:18:28.718 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:18:28.718 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:18:28.718 -07 000000382 INF: FPGA: Recv ZSGSRD 30564
17-03-17 18:18:28.728 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:18:28.728 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:18:28.728 -07 000000459 INF: FPGA: Recv ZSGSRD 30564
17-03-17 18:18:28.738 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:18:28.738 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:18:28.738 -07 000000459 INF: FPGA: Recv ZSGSRD 30569
17-03-17 18:18:28.748 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:18:28.748 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:18:28.748 -07 000000459 INF: FPGA: Recv ZSGSRD 30567
17-03-17 18:18:28.758 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:18:28.758 -07 000000433 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:18:28.758 -07 000000448 INF: FPGA: Recv ZPIEZORD 26416
17-03-17 18:18:28.768 -07 000000433 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:18:28.768 -07 000000433 INF: Z Motor: Piezo is near 36.4 V (nominally 0 to 100 V), expect near 45.6 V, since DAC is at 4.556 V. Piezo Error = -9.1 V.
17-03-17 18:18:28.768 -07 000000433 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.7 um, Read 10 ADC samples: Avg = 30568 (-135.9 uncal um), Error = 0.8 uncal um, Median = 30568 (-135.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 30561 (-135.9 uncal um), Max = 30575 (-135.9 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 18:18:28.768 -07 000000433 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30568, posNoise = 7, negNoise = 7
17-03-17 18:18:28.768 -07 000000433 INF: Z Motor: After move to -0.136690, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:18:28.768 -07 000000433 INF: Z Motor: Settle wait time = 1439 ms, measure time = 108 ms (allowed 150 ms), total time = 1547 ms
17-03-17 18:18:28.768 -07 000000433 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-17 18:18:28.818 -07 000000433 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1722 ms
17-03-17 18:18:28.818 -07 000000433 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:18:28.818 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:18:28.818 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:18:28.818 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:18:28.818 -07 000000482 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:18:28.818 -07 000000415 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:18:28.818 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:18:28.828 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:18:28.828 -07 000000415 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:18:28.828 -07 000000415 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:18:28.828 -07 000000415 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:18:28.838 -07 000000415 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 18:18:28.838 -07 000000415 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 18:18:28.838 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:18:28.888 -07 000000382 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:18:29.088 -07 000000433 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:18:29.088 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:18:29.088 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:18:29.128 -07 000000482 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:18:29.128 -07 000000569 INF: FPGA: Recv CAMSNAP
17-03-17 18:18:29.128 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 283 ms to get response, and 286 ms overall
17-03-17 18:18:30.398 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-17 18:18:30.528 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 123 ms.
17-03-17 18:18:30.528 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:18:30.528 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 18:18:30.528 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 1437 ms.
17-03-17 18:18:30.628 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:18:30.628 -07 000000433 INF: Autofocus start
17-03-17 18:18:30.628 -07 000000433 INF: MeasureProfile start
17-03-17 18:18:30.628 -07 000000415 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:18:30.638 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:18:30.638 -07 000000424 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:18:30.638 -07 000000433 INF: MeasureProfile done
17-03-17 18:18:30.638 -07 000000433 INF: X=96  Z correction [um]=0.437849
17-03-17 18:18:30.638 -07 000000433 INF: Autofocus finished
17-03-17 18:18:30.838 -07 000000482 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:18:30.838 -07 000000424 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:18:30.838 -07 000000610 INF: ------------ Scan Snapping tile 11 at Y-position 68.20556640625, Z-position -0.136698668760484. ----------
17-03-17 18:18:30.838 -07 000000610 INF: Cycle	11	Tile	11	Exposure Settings		A	392	G	188	T	188	C	392
17-03-17 18:18:30.848 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28469, sync = True, waitForSettling = True)
17-03-17 18:18:30.848 -07 000000610 INF: Z Motor: Moving to -0.130323 mm, started at -0.136699 mm, distance = 6.38 um
17-03-17 18:18:30.848 -07 000000610 INF: FPGA: Xmit ZDACW 28469\n [Z Motor]
17-03-17 18:18:30.848 -07 000000433 INF: FPGA: Recv ZDACW
17-03-17 18:18:30.858 -07 000000610 INF: FPGA: 'ZDACW 28469' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:18:30.858 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:18:30.858 -07 000000415 INF: FPGA: Recv ZDACR 28469
17-03-17 18:18:30.868 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:18:30.868 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:18:31.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:18:31.018 -07 000000438 INF: FPGA: Recv ZSGSRD 29578
17-03-17 18:18:31.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:18:31.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:18:31.028 -07 000000627 INF: FPGA: Recv ZSGSRD 29583
17-03-17 18:18:31.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:18:31.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:18:31.038 -07 000000569 INF: FPGA: Recv ZSGSRD 29579
17-03-17 18:18:31.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:18:31.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:18:31.048 -07 000000415 INF: FPGA: Recv ZSGSRD 29572
17-03-17 18:18:31.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:18:31.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:18:31.058 -07 000000459 INF: FPGA: Recv ZSGSRD 29575
17-03-17 18:18:31.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:18:31.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:18:31.068 -07 000000438 INF: FPGA: Recv ZSGSRD 29581
17-03-17 18:18:31.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:18:31.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:18:31.078 -07 000000431 INF: FPGA: Recv ZSGSRD 29576
17-03-17 18:18:31.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:18:31.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:18:31.088 -07 000000626 INF: FPGA: Recv ZSGSRD 29575
17-03-17 18:18:31.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:18:31.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:18:31.098 -07 000000415 INF: FPGA: Recv ZSGSRD 29578
17-03-17 18:18:31.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:18:31.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:18:31.108 -07 000000433 INF: FPGA: Recv ZSGSRD 29578
17-03-17 18:18:31.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:18:31.118 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:18:31.118 -07 000000431 INF: FPGA: Recv ZPIEZORD 25118
17-03-17 18:18:31.128 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:18:31.128 -07 000000610 INF: Z Motor: Piezo is near 33.7 V (nominally 0 to 100 V), expect near 43.4 V, since DAC is at 4.344 V. Piezo Error = -9.8 V.
17-03-17 18:18:31.128 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.3 um, Read 10 ADC samples: Avg = 29578 (-129.6 uncal um), Error = 0.8 uncal um, Median = 29578 (-129.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29572 (-129.5 uncal um), Max = 29583 (-129.6 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 18:18:31.128 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29578, posNoise = 5, negNoise = 6
17-03-17 18:18:31.128 -07 000000610 INF: Z Motor: After move to -0.130323, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:18:31.128 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 18:18:31.128 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:18:31.128 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:18:31.128 -07 000000415 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:18:31.128 -07 000000438 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:18:31.128 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:18:31.128 -07 000000627 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:18:31.128 -07 000000448 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:18:31.128 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:18:31.128 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:18:31.128 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:18:31.128 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:18:31.128 -07 000000448 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:18:31.138 -07 000000448 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 18:18:31.138 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 18:18:31.138 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:18:31.138 -07 000000448 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:18:31.148 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 18:18:31.148 -07 000000438 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 18:18:31.148 -07 000000448 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 18:18:31.148 -07 000000448 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 18:18:31.158 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 392 392 188 188 28645 150\n [Camera]
17-03-17 18:18:31.348 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:18:31.578 -07 000000627 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:18:31.578 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 10. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=93, R2=102, Total=195. Warn if over 250 bubbles per interval.
17-03-17 18:18:31.748 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 587
17-03-17 18:18:31.748 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 587
17-03-17 18:18:31.748 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:18:31.748 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 587
17-03-17 18:18:31.748 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 587
17-03-17 18:18:31.748 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:18:31.748 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:18:31.748 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-17 18:18:31.758 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:18:31.758 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 1055068208, 0x0, 418435064) start.
17-03-17 18:18:31.938 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28645 777
17-03-17 18:18:32.088 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP turning grn on 927
17-03-17 18:18:32.138 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 1055068208, 0x0, 418435064) end. Duration was 380 ms.
17-03-17 18:18:32.138 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-17 18:18:32.138 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:18:32.138 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 387 ms.
17-03-17 18:18:32.138 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 18:18:32.138 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:18:32.138 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:18:32.148 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:18:32.148 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 18:18:32.148 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 18:18:32.278 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1115
17-03-17 18:18:32.278 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1115
17-03-17 18:18:32.278 -07 000000433 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:18:32.278 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1115
17-03-17 18:18:32.278 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1115
17-03-17 18:18:32.278 -07 000000433 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:18:32.278 -07 000000433 INF: Camera: sBCa_ReadImage(785074288, 1090490472, 0x0, 391868352) start.
17-03-17 18:18:32.278 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:18:32.288 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:18:32.288 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 18:18:32.468 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP 1307
17-03-17 18:18:32.468 -07 000000415 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:18:32.468 -07 000000610 INF: FPGA: 'CAMDBLSNAP 392 392 188 188 28645 150' command took 2 ms to send, 1304 ms to get response, and 1314 ms overall
17-03-17 18:18:32.588 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 18:18:32.588 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 12 at Y-position 68.20556640625, Z-Position -0.130338698740141. ------
17-03-17 18:18:32.588 -07 000000627 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.0426 mm, moving Z to -0.13692 mm
17-03-17 18:18:32.588 -07 000000627 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:18:32.588 -07 000000448 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:18:32.588 -07 000000482 INF: Y Motor: Entering MoveAbsStepped (target = 110468 steps, sync = True, waitForSettling = True)
17-03-17 18:18:32.588 -07 000000482 INF: Y Motor: Moving to 69.0426 mm, started at 68.2056 mm, delta = 0.8370 mm
17-03-17 18:18:32.588 -07 000000415 INF: Z Motor: Entering MoveAbsStepped (DAC = 29911, sync = True, waitForSettling = False)
17-03-17 18:18:32.588 -07 000000415 INF: Z Motor: Moving to -0.136924 mm, started at -0.130339 mm, distance = -6.59 um
17-03-17 18:18:32.588 -07 000000459 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:18:32.598 -07 000000448 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:18:32.598 -07 000000482 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:18:32.598 -07 000000459 INF: FPGA: Recv YRDPOS 139686
17-03-17 18:18:32.608 -07 000000415 INF: FPGA: Xmit ZDACW 29911\n [Z Motor]
17-03-17 18:18:32.608 -07 000000482 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-17 18:18:32.608 -07 000000482 INF: Y Motor: Encoder = 139686 = motor step 109129.7 = 68.2061 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:18:32.608 -07 000000459 INF: FPGA: Recv ZDACW
17-03-17 18:18:32.608 -07 000000482 INF: Y Motor: Last commanded position = 68.2126 mm (109140.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:18:32.608 -07 000000482 INF: Y Motor: Moving 1338 steps-14
17-03-17 18:18:32.618 -07 000000448 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:18:32.618 -07 000000415 INF: FPGA: 'ZDACW 29911' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-17 18:18:32.628 -07 000000482 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:18:32.638 -07 000000415 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:18:32.638 -07 000000459 INF: FPGA: Recv ZDACR 29911
17-03-17 18:18:32.648 -07 000000415 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:18:32.648 -07 000000415 INF: Z Motor: MoveAbsStepped took 52 ms (did NOT wait for settling yet))
17-03-17 18:18:32.678 -07 000000433 INF: Camera: sBCa_ReadImage(785074288, 1090490472, 0x0, 391868352) end. Duration was 394 ms.
17-03-17 18:18:32.678 -07 000000433 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 18:18:32.678 -07 000000433 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:18:32.678 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:18:32.678 -07 000000433 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-17 18:18:32.688 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 393 ms.
17-03-17 18:18:32.688 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-17 18:18:32.688 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:18:32.688 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-17 18:18:32.688 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-17 18:18:32.818 -07 000000415 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:18:32.818 -07 000000448 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 18:18:32.998 -07 000000459 INF: FPGA: Recv YMVTILE
17-03-17 18:18:32.998 -07 000000482 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 394 ms overall
17-03-17 18:18:33.028 -07 000000482 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:18:33.038 -07 000000415 INF: FPGA: Recv YRDPOS 141369
17-03-17 18:18:33.038 -07 000000482 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 18:18:33.038 -07 000000482 INF: Y Motor: Encoder = 141369 = motor step 110444.5 = 69.0278 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:18:33.038 -07 000000482 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-17 18:18:33.038 -07 000000482 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.837 mm, average velocity = 2.124 mm/sec
17-03-17 18:18:33.218 -07 000000448 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 11, FrontChillerTemperature: 3.990831,
17-03-17 18:18:33.988 -07 000000482 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:18:33.988 -07 000000415 INF: FPGA: Recv YRDPOS 141369
17-03-17 18:18:33.998 -07 000000482 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:18:33.998 -07 000000482 INF: Y Motor: Encoder = 141369 = motor step 110444.5 = 69.0278 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:18:34.018 -07 000000482 INF: Y Motor: After move to 69.042610, error = -0.014778, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:18:34.018 -07 000000482 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:18:34.018 -07 000000482 INF: Y Motor: Moved to 69.0278 after 1423 ms (table move)
17-03-17 18:18:34.018 -07 000000627 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136924 mm (DAC = 29911)
17-03-17 18:18:34.018 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:18:34.018 -07 000000415 INF: FPGA: Recv ZSGSRD 30604
17-03-17 18:18:34.028 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 18:18:34.028 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:18:34.028 -07 000000502 INF: FPGA: Recv ZSGSRD 30603
17-03-17 18:18:34.038 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:18:34.038 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:18:34.038 -07 000000448 INF: FPGA: Recv ZSGSRD 30598
17-03-17 18:18:34.048 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:18:34.048 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:18:34.048 -07 000000502 INF: FPGA: Recv ZSGSRD 30604
17-03-17 18:18:34.058 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:18:34.058 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:18:34.058 -07 000000448 INF: FPGA: Recv ZSGSRD 30608
17-03-17 18:18:34.068 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:18:34.068 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:18:34.068 -07 000000541 INF: FPGA: Recv ZSGSRD 30606
17-03-17 18:18:34.078 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:18:34.078 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:18:34.078 -07 000000448 INF: FPGA: Recv ZSGSRD 30609
17-03-17 18:18:34.088 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:18:34.088 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:18:34.088 -07 000000541 INF: FPGA: Recv ZSGSRD 30603
17-03-17 18:18:34.098 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:18:34.098 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:18:34.098 -07 000000448 INF: FPGA: Recv ZSGSRD 30604
17-03-17 18:18:34.108 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:18:34.108 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:18:34.108 -07 000000541 INF: FPGA: Recv ZSGSRD 30602
17-03-17 18:18:34.118 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:18:34.118 -07 000000627 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:18:34.118 -07 000000618 INF: FPGA: Recv ZPIEZORD 26487
17-03-17 18:18:34.128 -07 000000627 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:18:34.128 -07 000000627 INF: Z Motor: Piezo is near 36.6 V (nominally 0 to 100 V), expect near 45.6 V, since DAC is at 4.564 V. Piezo Error = -9.1 V.
17-03-17 18:18:34.128 -07 000000627 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.9 um, Read 10 ADC samples: Avg = 30604 (-136.1 uncal um), Error = 0.8 uncal um, Median = 30604 (-136.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 30598 (-136.1 uncal um), Max = 30609 (-136.2 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 18:18:34.128 -07 000000627 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30604, posNoise = 5, negNoise = 6
17-03-17 18:18:34.128 -07 000000627 INF: Z Motor: After move to -0.136924, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:18:34.128 -07 000000627 INF: Z Motor: Settle wait time = 1426 ms, measure time = 106 ms (allowed 150 ms), total time = 1532 ms
17-03-17 18:18:34.128 -07 000000627 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-17 18:18:34.178 -07 000000627 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1584 ms
17-03-17 18:18:34.178 -07 000000627 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:18:34.178 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:18:34.178 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:18:34.178 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:18:34.178 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:18:34.178 -07 000000482 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:18:34.178 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:18:34.178 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:18:34.178 -07 000000482 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:18:34.178 -07 000000482 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:18:34.188 -07 000000482 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:18:34.198 -07 000000482 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 18:18:34.198 -07 000000482 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-17 18:18:34.198 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:18:34.248 -07 000000486 INF: FPGA: Recv @CAMSNAP turning led on 42
17-03-17 18:18:34.448 -07 000000541 INF: FPGA: Recv @CAMSNAP img rdy 242
17-03-17 18:18:34.448 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 242
17-03-17 18:18:34.448 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:18:34.488 -07 000000459 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:18:34.488 -07 000000448 INF: FPGA: Recv CAMSNAP
17-03-17 18:18:34.488 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 281 ms to get response, and 285 ms overall
17-03-17 18:18:35.508 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-17 18:18:35.628 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 123 ms.
17-03-17 18:18:35.628 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:18:35.628 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 18:18:35.628 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 1180 ms.
17-03-17 18:18:35.688 -07 000000448 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:18:35.688 -07 000000433 INF: Autofocus start
17-03-17 18:18:35.688 -07 000000433 INF: MeasureProfile start
17-03-17 18:18:35.688 -07 000000438 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:18:35.698 -07 000000448 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:18:35.698 -07 000000448 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:18:35.698 -07 000000433 INF: MeasureProfile done
17-03-17 18:18:35.698 -07 000000433 INF: X=16  Z correction [um]=0.0530179
17-03-17 18:18:35.698 -07 000000433 INF: Autofocus finished
17-03-17 18:18:35.898 -07 000000459 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:18:35.898 -07 000000448 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:18:35.898 -07 000000610 INF: ------------ Scan Snapping tile 12 at Y-position 69.02783203125, Z-position -0.136929940397587. ----------
17-03-17 18:18:35.898 -07 000000610 INF: Cycle	11	Tile	12	Exposure Settings		A	392	G	188	T	188	C	392
17-03-17 18:18:35.908 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28435, sync = True, waitForSettling = True)
17-03-17 18:18:35.908 -07 000000610 INF: Z Motor: Moving to -0.130167 mm, started at -0.136930 mm, distance = 6.76 um
17-03-17 18:18:35.908 -07 000000610 INF: FPGA: Xmit ZDACW 28435\n [Z Motor]
17-03-17 18:18:35.908 -07 000000627 INF: FPGA: Recv ZDACW
17-03-17 18:18:35.918 -07 000000610 INF: FPGA: 'ZDACW 28435' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:18:35.918 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:18:35.918 -07 000000618 INF: FPGA: Recv ZDACR 28435
17-03-17 18:18:35.928 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:18:35.928 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:18:36.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:18:36.078 -07 000000448 INF: FPGA: Recv ZSGSRD 29554
17-03-17 18:18:36.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:18:36.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:18:36.088 -07 000000618 INF: FPGA: Recv ZSGSRD 29557
17-03-17 18:18:36.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:18:36.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:18:36.098 -07 000000433 INF: FPGA: Recv ZSGSRD 29552
17-03-17 18:18:36.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:18:36.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:18:36.108 -07 000000618 INF: FPGA: Recv ZSGSRD 29552
17-03-17 18:18:36.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:18:36.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:18:36.118 -07 000000433 INF: FPGA: Recv ZSGSRD 29553
17-03-17 18:18:36.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:18:36.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:18:36.128 -07 000000618 INF: FPGA: Recv ZSGSRD 29551
17-03-17 18:18:36.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:18:36.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:18:36.138 -07 000000448 INF: FPGA: Recv ZSGSRD 29552
17-03-17 18:18:36.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:18:36.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:18:36.148 -07 000000618 INF: FPGA: Recv ZSGSRD 29546
17-03-17 18:18:36.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:18:36.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:18:36.158 -07 000000433 INF: FPGA: Recv ZSGSRD 29555
17-03-17 18:18:36.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:18:36.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:18:36.168 -07 000000482 INF: FPGA: Recv ZSGSRD 29555
17-03-17 18:18:36.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:18:36.178 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:18:36.178 -07 000000433 INF: FPGA: Recv ZPIEZORD 25082
17-03-17 18:18:36.188 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:18:36.188 -07 000000610 INF: Z Motor: Piezo is near 33.6 V (nominally 0 to 100 V), expect near 43.4 V, since DAC is at 4.339 V. Piezo Error = -9.8 V.
17-03-17 18:18:36.188 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.2 um, Read 10 ADC samples: Avg = 29553 (-129.4 uncal um), Error = 0.8 uncal um, Median = 29552 (-129.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29546 (-129.4 uncal um), Max = 29557 (-129.4 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 18:18:36.188 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29553, posNoise = 4, negNoise = 7
17-03-17 18:18:36.188 -07 000000610 INF: Z Motor: After move to -0.130167, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:18:36.188 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 18:18:36.188 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:18:36.188 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:18:36.188 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:18:36.188 -07 000000541 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:18:36.188 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:18:36.188 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:18:36.188 -07 000000486 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:18:36.188 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:18:36.188 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 3 ms.
17-03-17 18:18:36.188 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:18:36.198 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:18:36.198 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:18:36.198 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 18:18:36.198 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:18:36.198 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 18:18:36.198 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:18:36.208 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 14 ms.
17-03-17 18:18:36.208 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 18:18:36.208 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms.
17-03-17 18:18:36.208 -07 000000486 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 23 ms.
17-03-17 18:18:36.218 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 392 392 188 188 28612 150\n [Camera]
17-03-17 18:18:36.418 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:18:36.578 -07 000000486 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:18:36.578 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 10. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=93, R2=102, Total=195. Warn if over 250 bubbles per interval.
17-03-17 18:18:36.808 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 584
17-03-17 18:18:36.808 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 584
17-03-17 18:18:36.808 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:18:36.808 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 584
17-03-17 18:18:36.808 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 584
17-03-17 18:18:36.808 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:18:36.808 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:18:36.808 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-17 18:18:36.818 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:18:36.818 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 1055068208, 0x0, 418435064) start.
17-03-17 18:18:36.998 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28612 777
17-03-17 18:18:37.148 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP turning grn on 927
17-03-17 18:18:37.208 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 392 ms.
17-03-17 18:18:37.208 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-17 18:18:37.208 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:18:37.208 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:18:37.208 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 18:18:37.208 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 1055068208, 0x0, 418435064) end. Duration was 394 ms.
17-03-17 18:18:37.208 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 18:18:37.208 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:18:37.218 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:18:37.218 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-17 18:18:37.338 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1115
17-03-17 18:18:37.338 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1115
17-03-17 18:18:37.338 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:18:37.338 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1115
17-03-17 18:18:37.338 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:18:37.338 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 18:18:37.338 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1115
17-03-17 18:18:37.338 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:18:37.338 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:18:37.338 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 2485095640, 0x0, 418435064) start.
17-03-17 18:18:37.528 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP 1307
17-03-17 18:18:37.528 -07 000000448 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:18:37.528 -07 000000610 INF: FPGA: 'CAMDBLSNAP 392 392 188 188 28612 150' command took 2 ms to send, 1306 ms to get response, and 1315 ms overall
17-03-17 18:18:37.528 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 18:18:37.528 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 13 at Y-position 69.02783203125, Z-Position -0.130178093436597. ------
17-03-17 18:18:37.538 -07 000000415 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:18:37.538 -07 000000626 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.8726 mm, moving Z to -0.13658 mm
17-03-17 18:18:37.538 -07 000000626 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:18:37.538 -07 000000618 INF: Y Motor: Entering MoveAbsStepped (target = 111796 steps, sync = True, waitForSettling = True)
17-03-17 18:18:37.538 -07 000000618 INF: Y Motor: Moving to 69.8726 mm, started at 69.0278 mm, delta = 0.8448 mm
17-03-17 18:18:37.538 -07 000000486 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:18:37.538 -07 000000541 INF: Z Motor: Entering MoveAbsStepped (DAC = 29837, sync = True, waitForSettling = False)
17-03-17 18:18:37.538 -07 000000541 INF: Z Motor: Moving to -0.136585 mm, started at -0.130178 mm, distance = -6.41 um
17-03-17 18:18:37.548 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:18:37.548 -07 000000415 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:18:37.548 -07 000000459 INF: FPGA: Recv YRDPOS 141370
17-03-17 18:18:37.558 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-17 18:18:37.558 -07 000000618 INF: Y Motor: Encoder = 141370 = motor step 110445.3 = 69.0283 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:18:37.558 -07 000000541 INF: FPGA: Xmit ZDACW 29837\n [Z Motor]
17-03-17 18:18:37.558 -07 000000618 INF: Y Motor: Last commanded position = 69.0426 mm (110468.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:18:37.558 -07 000000618 INF: Y Motor: Moving 1351 steps-30
17-03-17 18:18:37.558 -07 000000448 INF: FPGA: Recv ZDACW
17-03-17 18:18:37.568 -07 000000415 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:18:37.568 -07 000000541 INF: FPGA: 'ZDACW 29837' command took 1 ms to send, 0 ms to get response, and 23 ms overall
17-03-17 18:18:37.578 -07 000000618 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:18:37.588 -07 000000541 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:18:37.588 -07 000000512 INF: FPGA: Recv ZDACR 29837
17-03-17 18:18:37.598 -07 000000541 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:18:37.598 -07 000000541 INF: Z Motor: MoveAbsStepped took 54 ms (did NOT wait for settling yet))
17-03-17 18:18:37.748 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 402 ms.
17-03-17 18:18:37.748 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-17 18:18:37.748 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:18:37.748 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 2485095640, 0x0, 418435064) end. Duration was 401 ms.
17-03-17 18:18:37.748 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-17 18:18:37.748 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:18:37.748 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:18:37.748 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms.
17-03-17 18:18:37.748 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:18:37.758 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-17 18:18:37.768 -07 000000486 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:18:37.768 -07 000000415 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 221 ms overall
17-03-17 18:18:37.948 -07 000000415 INF: FPGA: Recv YMVTILE
17-03-17 18:18:37.948 -07 000000618 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 394 ms overall
17-03-17 18:18:37.988 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:18:37.988 -07 000000415 INF: FPGA: Recv YRDPOS 143082
17-03-17 18:18:37.998 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:18:37.998 -07 000000618 INF: Y Motor: Encoder = 143082 = motor step 111782.8 = 69.8643 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:18:37.998 -07 000000618 INF: Y Motor: Position error before settling (table move) = -17 encoder counts (-0.008 mm)
17-03-17 18:18:37.998 -07 000000618 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.845 mm, average velocity = 2.144 mm/sec
17-03-17 18:18:38.578 -07 000000415 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 11, FrontChillerTemperature: 4.012614,
17-03-17 18:18:38.948 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:18:38.948 -07 000000415 INF: FPGA: Recv YRDPOS 143082
17-03-17 18:18:38.958 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:18:38.958 -07 000000618 INF: Y Motor: Encoder = 143082 = motor step 111782.8 = 69.8643 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:18:38.978 -07 000000618 INF: Y Motor: After move to 69.872612, error = -0.008354, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:18:38.978 -07 000000618 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:18:38.978 -07 000000618 INF: Y Motor: Moved to 69.8643 after 1435 ms (table move)
17-03-17 18:18:38.978 -07 000000626 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136585 mm (DAC = 29837)
17-03-17 18:18:38.978 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:18:38.988 -07 000000415 INF: FPGA: Recv ZSGSRD 30559
17-03-17 18:18:38.988 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 18:18:38.988 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:18:38.988 -07 000000627 INF: FPGA: Recv ZSGSRD 30548
17-03-17 18:18:38.998 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:18:38.998 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:18:38.998 -07 000000486 INF: FPGA: Recv ZSGSRD 30549
17-03-17 18:18:39.008 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:18:39.008 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:18:39.008 -07 000000618 INF: FPGA: Recv ZSGSRD 30556
17-03-17 18:18:39.018 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:18:39.018 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:18:39.018 -07 000000627 INF: FPGA: Recv ZSGSRD 30556
17-03-17 18:18:39.028 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:18:39.028 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:18:39.028 -07 000000627 INF: FPGA: Recv ZSGSRD 30555
17-03-17 18:18:39.038 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:18:39.038 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:18:39.038 -07 000000618 INF: FPGA: Recv ZSGSRD 30548
17-03-17 18:18:39.048 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:18:39.048 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:18:39.048 -07 000000627 INF: FPGA: Recv ZSGSRD 30557
17-03-17 18:18:39.058 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:18:39.058 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:18:39.058 -07 000000415 INF: FPGA: Recv ZSGSRD 30541
17-03-17 18:18:39.068 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:18:39.068 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:18:39.068 -07 000000486 INF: FPGA: Recv ZSGSRD 30545
17-03-17 18:18:39.078 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:18:39.078 -07 000000626 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:18:39.078 -07 000000627 INF: FPGA: Recv ZPIEZORD 26411
17-03-17 18:18:39.088 -07 000000626 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:18:39.088 -07 000000626 INF: Z Motor: Piezo is near 36.4 V (nominally 0 to 100 V), expect near 45.5 V, since DAC is at 4.553 V. Piezo Error = -9.1 V.
17-03-17 18:18:39.088 -07 000000626 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.6 um, Read 10 ADC samples: Avg = 30551 (-135.8 uncal um), Error = 0.8 uncal um, Median = 30552 (-135.8 uncal um), StdDev = 6 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 30541 (-135.7 uncal um), Max = 30559 (-135.8 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-17 18:18:39.088 -07 000000626 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30551, posNoise = 8, negNoise = 10
17-03-17 18:18:39.088 -07 000000626 INF: Z Motor: After move to -0.136585, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:18:39.088 -07 000000626 INF: Z Motor: Settle wait time = 1439 ms, measure time = 105 ms (allowed 150 ms), total time = 1544 ms
17-03-17 18:18:39.088 -07 000000626 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 18:18:39.138 -07 000000626 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1597 ms
17-03-17 18:18:39.138 -07 000000626 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:18:39.138 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:18:39.138 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:18:39.138 -07 000000415 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:18:39.138 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:18:39.148 -07 000000486 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:18:39.148 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:18:39.148 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:18:39.148 -07 000000486 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:18:39.148 -07 000000486 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:18:39.148 -07 000000486 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:18:39.158 -07 000000486 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 18:18:39.158 -07 000000486 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-17 18:18:39.158 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:18:39.208 -07 000000618 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:18:39.408 -07 000000486 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:18:39.408 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:18:39.408 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:18:39.448 -07 000000415 INF: FPGA: Recv @CAMSNAP 281
17-03-17 18:18:39.448 -07 000000627 INF: FPGA: Recv CAMSNAP
17-03-17 18:18:39.448 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 275 ms to get response, and 286 ms overall
17-03-17 18:18:39.988 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 675221432, 0x0, 559484976) start.
17-03-17 18:18:40.108 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 675221432, 0x0, 559484976) end. Duration was 121 ms.
17-03-17 18:18:40.108 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:18:40.108 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 18:18:40.108 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 699 ms.
17-03-17 18:18:40.148 -07 000000618 INF: Autofocus start
17-03-17 18:18:40.148 -07 000000618 INF: MeasureProfile start
17-03-17 18:18:40.148 -07 000000627 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:18:40.148 -07 000000438 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:18:40.158 -07 000000627 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 18:18:40.158 -07 000000627 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:18:40.168 -07 000000618 INF: MeasureProfile done
17-03-17 18:18:40.168 -07 000000618 INF: X=-16  Z correction [um]=-0.08128808
17-03-17 18:18:40.168 -07 000000618 INF: Autofocus finished
17-03-17 18:18:40.358 -07 000000486 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:18:40.358 -07 000000627 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:18:40.358 -07 000000610 INF: ------------ Scan Snapping tile 13 at Y-position 69.8642578125, Z-position -0.136589457154074. ----------
17-03-17 18:18:40.358 -07 000000610 INF: Cycle	11	Tile	13	Exposure Settings		A	392	G	188	T	188	C	392
17-03-17 18:18:40.368 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28332, sync = True, waitForSettling = True)
17-03-17 18:18:40.368 -07 000000610 INF: Z Motor: Moving to -0.129696 mm, started at -0.136589 mm, distance = 6.89 um
17-03-17 18:18:40.368 -07 000000610 INF: FPGA: Xmit ZDACW 28332\n [Z Motor]
17-03-17 18:18:40.368 -07 000000482 INF: FPGA: Recv ZDACW
17-03-17 18:18:40.378 -07 000000610 INF: FPGA: 'ZDACW 28332' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:18:40.378 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:18:40.378 -07 000000486 INF: FPGA: Recv ZDACR 28332
17-03-17 18:18:40.388 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:18:40.388 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:18:40.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:18:40.548 -07 000000626 INF: FPGA: Recv ZSGSRD 29483
17-03-17 18:18:40.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 18:18:40.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:18:40.558 -07 000000618 INF: FPGA: Recv ZSGSRD 29487
17-03-17 18:18:40.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:18:40.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:18:40.568 -07 000000438 INF: FPGA: Recv ZSGSRD 29475
17-03-17 18:18:40.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:18:40.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:18:40.578 -07 000000482 INF: FPGA: Recv ZSGSRD 29479
17-03-17 18:18:40.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:18:40.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:18:40.588 -07 000000486 INF: FPGA: Recv ZSGSRD 29478
17-03-17 18:18:40.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:18:40.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:18:40.598 -07 000000618 INF: FPGA: Recv ZSGSRD 29476
17-03-17 18:18:40.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:18:40.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:18:40.608 -07 000000438 INF: FPGA: Recv ZSGSRD 29481
17-03-17 18:18:40.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:18:40.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:18:40.618 -07 000000627 INF: FPGA: Recv ZSGSRD 29478
17-03-17 18:18:40.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:18:40.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:18:40.628 -07 000000626 INF: FPGA: Recv ZSGSRD 29476
17-03-17 18:18:40.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:18:40.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:18:40.638 -07 000000502 INF: FPGA: Recv ZSGSRD 29484
17-03-17 18:18:40.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:18:40.648 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:18:40.648 -07 000000486 INF: FPGA: Recv ZPIEZORD 25005
17-03-17 18:18:40.658 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:18:40.658 -07 000000610 INF: Z Motor: Piezo is near 33.4 V (nominally 0 to 100 V), expect near 43.2 V, since DAC is at 4.323 V. Piezo Error = -9.8 V.
17-03-17 18:18:40.658 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.7 um, Read 10 ADC samples: Avg = 29480 (-128.9 uncal um), Error = 0.8 uncal um, Median = 29478 (-128.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29475 (-128.9 uncal um), Max = 29487 (-129.0 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 18:18:40.658 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29480, posNoise = 7, negNoise = 5
17-03-17 18:18:40.658 -07 000000610 INF: Z Motor: After move to -0.129696, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:18:40.658 -07 000000610 INF: Z Motor: MoveAbsStepped took 289 ms)
17-03-17 18:18:40.658 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:18:40.658 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:18:40.658 -07 000000486 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:18:40.658 -07 000000415 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:18:40.658 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:18:40.658 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:18:40.658 -07 000000482 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:18:40.658 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:18:40.658 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:18:40.658 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:18:40.658 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:18:40.658 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:18:40.668 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 18:18:40.668 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:18:40.668 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 18:18:40.668 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:18:40.678 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 18:18:40.678 -07 000000482 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 19 ms.
17-03-17 18:18:40.678 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 18:18:40.678 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 18:18:40.678 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 392 392 188 188 28509 150\n [Camera]
17-03-17 18:18:40.888 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:18:41.278 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 584
17-03-17 18:18:41.278 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 584
17-03-17 18:18:41.278 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:18:41.278 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:18:41.278 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 1142787800, 0x0, 391868352) start.
17-03-17 18:18:41.278 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 584
17-03-17 18:18:41.278 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 584
17-03-17 18:18:41.278 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:18:41.278 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:18:41.278 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-17 18:18:41.468 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28509 777
17-03-17 18:18:41.578 -07 000000486 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:18:41.578 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 10. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=93, R2=102, Total=195. Warn if over 250 bubbles per interval.
17-03-17 18:18:41.618 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP turning grn on 927
17-03-17 18:18:41.678 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 1142787800, 0x0, 391868352) end. Duration was 401 ms.
17-03-17 18:18:41.678 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 18:18:41.678 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:18:41.678 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 401 ms.
17-03-17 18:18:41.678 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-17 18:18:41.678 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:18:41.678 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:18:41.678 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 408 ms.
17-03-17 18:18:41.688 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:18:41.688 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-17 18:18:41.808 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1115
17-03-17 18:18:41.808 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1115
17-03-17 18:18:41.808 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:18:41.808 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:18:41.808 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-17 18:18:41.808 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1115
17-03-17 18:18:41.808 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1115
17-03-17 18:18:41.808 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:18:41.808 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:18:41.808 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 18:18:41.998 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP 1307
17-03-17 18:18:41.998 -07 000000627 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:18:41.998 -07 000000610 INF: FPGA: 'CAMDBLSNAP 392 392 188 188 28509 150' command took 2 ms to send, 1304 ms to get response, and 1315 ms overall
17-03-17 18:18:41.998 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 18:18:41.998 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 14 at Y-position 69.8642578125, Z-Position -0.129709125950248. ------
17-03-17 18:18:41.998 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:18:41.998 -07 000000438 INF: Y Motor: MoveYZ optimized starting. Moving Y to 70.7026 mm, moving Z to -0.13607 mm
17-03-17 18:18:41.998 -07 000000438 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:18:42.118 -07 000000486 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:18:42.118 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 120 ms overall
17-03-17 18:18:42.128 -07 000000502 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:18:42.128 -07 000000433 INF: Y Motor: Entering MoveAbsStepped (target = 113124 steps, sync = True, waitForSettling = True)
17-03-17 18:18:42.128 -07 000000433 INF: Y Motor: Moving to 70.7026 mm, started at 69.8643 mm, delta = 0.8383 mm
17-03-17 18:18:42.128 -07 000000424 INF: Z Motor: Entering MoveAbsStepped (DAC = 29724, sync = True, waitForSettling = False)
17-03-17 18:18:42.128 -07 000000424 INF: Z Motor: Moving to -0.136068 mm, started at -0.129709 mm, distance = -6.36 um
17-03-17 18:18:42.138 -07 000000433 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:18:42.138 -07 000000626 INF: FPGA: Recv YRDPOS 143082
17-03-17 18:18:42.148 -07 000000424 INF: FPGA: Xmit ZDACW 29724\n [Z Motor]
17-03-17 18:18:42.148 -07 000000433 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-17 18:18:42.148 -07 000000433 INF: Y Motor: Encoder = 143082 = motor step 111782.8 = 69.8643 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:18:42.148 -07 000000433 INF: Y Motor: Last commanded position = 69.8726 mm (111796.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:18:42.148 -07 000000433 INF: Y Motor: Moving 1341 steps-17
17-03-17 18:18:42.148 -07 000000627 INF: FPGA: Recv ZDACW
17-03-17 18:18:42.158 -07 000000433 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:18:42.158 -07 000000424 INF: FPGA: 'ZDACW 29724' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-17 18:18:42.168 -07 000000424 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:18:42.168 -07 000000626 INF: FPGA: Recv ZDACR 29724
17-03-17 18:18:42.178 -07 000000424 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 18:18:42.178 -07 000000424 INF: Z Motor: MoveAbsStepped took 47 ms (did NOT wait for settling yet))
17-03-17 18:18:42.208 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 404 ms.
17-03-17 18:18:42.208 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-17 18:18:42.208 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:18:42.208 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 403 ms.
17-03-17 18:18:42.208 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-17 18:18:42.208 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:18:42.218 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:18:42.218 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 18:18:42.218 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 412 ms.
17-03-17 18:18:42.228 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-17 18:18:42.328 -07 000000429 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:18:42.328 -07 000000502 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 202 ms overall
17-03-17 18:18:42.528 -07 000000448 INF: FPGA: Recv YMVTILE
17-03-17 18:18:42.528 -07 000000433 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-17 18:18:42.568 -07 000000433 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:18:42.568 -07 000000424 INF: FPGA: Recv YRDPOS 144771
17-03-17 18:18:42.578 -07 000000433 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:18:42.578 -07 000000433 INF: Y Motor: Encoder = 144771 = motor step 113102.3 = 70.6890 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:18:42.578 -07 000000433 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 18:18:42.578 -07 000000433 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 387 ms, distance = 0.838 mm, average velocity = 2.166 mm/sec
17-03-17 18:18:43.528 -07 000000433 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:18:43.528 -07 000000502 INF: FPGA: Recv YRDPOS 144772
17-03-17 18:18:43.538 -07 000000433 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:18:43.538 -07 000000433 INF: Y Motor: Encoder = 144772 = motor step 113103.1 = 70.6895 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:18:43.548 -07 000000433 INF: Y Motor: After move to 70.702606, error = -0.013153, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:18:43.558 -07 000000433 INF: Y Motor: Position error after settling (table move) = -27 encoder counts (-0.013 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 18:18:43.558 -07 000000433 INF: Y Motor: Moved to 70.6895 after 1428 ms (table move)
17-03-17 18:18:43.558 -07 000000438 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136068 mm (DAC = 29724)
17-03-17 18:18:43.558 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:18:43.558 -07 000000482 INF: FPGA: Recv ZSGSRD 30469
17-03-17 18:18:43.568 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 18:18:43.568 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:18:43.568 -07 000000431 INF: FPGA: Recv ZSGSRD 30464
17-03-17 18:18:43.578 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:18:43.578 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:18:43.578 -07 000000502 INF: FPGA: Recv ZSGSRD 30472
17-03-17 18:18:43.588 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:18:43.588 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:18:43.588 -07 000000382 INF: FPGA: Recv ZSGSRD 30465
17-03-17 18:18:43.598 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:18:43.598 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:18:43.598 -07 000000478 INF: FPGA: Recv ZSGSRD 30473
17-03-17 18:18:43.608 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:18:43.608 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:18:43.608 -07 000000569 INF: FPGA: Recv ZSGSRD 30479
17-03-17 18:18:43.618 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:18:43.628 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:18:43.628 -07 000000448 INF: FPGA: Recv ZSGSRD 30473
17-03-17 18:18:43.638 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 18:18:43.638 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:18:43.638 -07 000000431 INF: FPGA: Recv ZSGSRD 30467
17-03-17 18:18:43.648 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:18:43.648 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:18:43.648 -07 000000433 INF: FPGA: Recv ZSGSRD 30471
17-03-17 18:18:43.658 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:18:43.658 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:18:43.658 -07 000000482 INF: FPGA: Recv ZSGSRD 30465
17-03-17 18:18:43.668 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:18:43.668 -07 000000438 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:18:43.668 -07 000000478 INF: FPGA: Recv ZPIEZORD 26339
17-03-17 18:18:43.678 -07 000000438 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:18:43.678 -07 000000438 INF: Z Motor: Piezo is near 36.3 V (nominally 0 to 100 V), expect near 45.4 V, since DAC is at 4.536 V. Piezo Error = -9.1 V.
17-03-17 18:18:43.678 -07 000000438 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.1 um, Read 10 ADC samples: Avg = 30470 (-135.3 uncal um), Error = 0.8 uncal um, Median = 30470 (-135.3 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 30464 (-135.2 uncal um), Max = 30479 (-135.3 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 18:18:43.678 -07 000000438 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30470, posNoise = 9, negNoise = 6
17-03-17 18:18:43.678 -07 000000438 INF: Z Motor: After move to -0.136068, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:18:43.678 -07 000000438 INF: Z Motor: Settle wait time = 1431 ms, measure time = 117 ms (allowed 150 ms), total time = 1548 ms
17-03-17 18:18:43.678 -07 000000438 INF: Z Motor: Waiting extra 33 ms after reading position to reach expected total of 150 ms
17-03-17 18:18:43.718 -07 000000438 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1710 ms
17-03-17 18:18:43.718 -07 000000438 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:18:43.718 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:18:43.718 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:18:43.718 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:18:43.718 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:18:43.718 -07 000000431 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:18:43.718 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:18:43.718 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:18:43.718 -07 000000431 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:18:43.728 -07 000000431 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:18:43.728 -07 000000431 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:18:43.738 -07 000000431 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 18:18:43.738 -07 000000431 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 18:18:43.738 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:18:43.788 -07 000000431 INF: FPGA: Recv @CAMSNAP turning led on 41
17-03-17 18:18:43.938 -07 000000431 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 11, FrontChillerTemperature: 4.011254,
17-03-17 18:18:43.988 -07 000000482 INF: FPGA: Recv @CAMSNAP img rdy 241
17-03-17 18:18:43.988 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 241
17-03-17 18:18:43.988 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:18:44.028 -07 000000502 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:18:44.028 -07 000000429 INF: FPGA: Recv CAMSNAP
17-03-17 18:18:44.028 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 281 ms to get response, and 285 ms overall
17-03-17 18:18:45.038 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-17 18:18:45.158 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 122 ms.
17-03-17 18:18:45.158 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:18:45.158 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 18:18:45.158 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 1176 ms.
17-03-17 18:18:45.228 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:18:45.228 -07 000000429 INF: Autofocus start
17-03-17 18:18:45.228 -07 000000429 INF: MeasureProfile start
17-03-17 18:18:45.228 -07 000000482 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:18:45.238 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:18:45.238 -07 000000569 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:18:45.238 -07 000000429 INF: MeasureProfile done
17-03-17 18:18:45.238 -07 000000429 INF: X=32  Z correction [um]=0.1299841
17-03-17 18:18:45.238 -07 000000429 INF: Autofocus finished
17-03-17 18:18:45.438 -07 000000431 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:18:45.438 -07 000000569 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:18:45.438 -07 000000610 INF: ------------ Scan Snapping tile 14 at Y-position 70.689453125, Z-position -0.136069095970591. ----------
17-03-17 18:18:45.438 -07 000000610 INF: Cycle	11	Tile	14	Exposure Settings		A	392	G	188	T	188	C	392
17-03-17 18:18:45.448 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28265, sync = True, waitForSettling = True)
17-03-17 18:18:45.448 -07 000000610 INF: Z Motor: Moving to -0.129389 mm, started at -0.136069 mm, distance = 6.68 um
17-03-17 18:18:45.448 -07 000000610 INF: FPGA: Xmit ZDACW 28265\n [Z Motor]
17-03-17 18:18:45.448 -07 000000415 INF: FPGA: Recv ZDACW
17-03-17 18:18:45.458 -07 000000610 INF: FPGA: 'ZDACW 28265' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:18:45.458 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:18:45.458 -07 000000429 INF: FPGA: Recv ZDACR 28265
17-03-17 18:18:45.468 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:18:45.468 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:18:45.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:18:45.618 -07 000000482 INF: FPGA: Recv ZSGSRD 29433
17-03-17 18:18:45.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:18:45.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:18:45.628 -07 000000502 INF: FPGA: Recv ZSGSRD 29432
17-03-17 18:18:45.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:18:45.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:18:45.638 -07 000000429 INF: FPGA: Recv ZSGSRD 29430
17-03-17 18:18:45.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:18:45.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:18:45.648 -07 000000431 INF: FPGA: Recv ZSGSRD 29431
17-03-17 18:18:45.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:18:45.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:18:45.658 -07 000000618 INF: FPGA: Recv ZSGSRD 29427
17-03-17 18:18:45.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:18:45.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:18:45.668 -07 000000502 INF: FPGA: Recv ZSGSRD 29437
17-03-17 18:18:45.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:18:45.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:18:45.678 -07 000000569 INF: FPGA: Recv ZSGSRD 29423
17-03-17 18:18:45.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:18:45.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:18:45.688 -07 000000502 INF: FPGA: Recv ZSGSRD 29429
17-03-17 18:18:45.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:18:45.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:18:45.698 -07 000000482 INF: FPGA: Recv ZSGSRD 29437
17-03-17 18:18:45.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:18:45.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:18:45.708 -07 000000431 INF: FPGA: Recv ZSGSRD 29433
17-03-17 18:18:45.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:18:45.718 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:18:45.718 -07 000000429 INF: FPGA: Recv ZPIEZORD 24967
17-03-17 18:18:45.728 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:18:45.728 -07 000000610 INF: Z Motor: Piezo is near 33.3 V (nominally 0 to 100 V), expect near 43.1 V, since DAC is at 4.313 V. Piezo Error = -9.8 V.
17-03-17 18:18:45.728 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.4 um, Read 10 ADC samples: Avg = 29431 (-128.6 uncal um), Error = 0.8 uncal um, Median = 29432 (-128.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 29423 (-128.6 uncal um), Max = 29437 (-128.7 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 18:18:45.728 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29431, posNoise = 6, negNoise = 8
17-03-17 18:18:45.728 -07 000000610 INF: Z Motor: After move to -0.129389, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:18:45.728 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 18:18:45.728 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:18:45.728 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:18:45.728 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:18:45.728 -07 000000482 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:18:45.728 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:18:45.728 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:18:45.728 -07 000000429 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:18:45.728 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:18:45.728 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:18:45.728 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:18:45.728 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:18:45.728 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:18:45.738 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 18:18:45.738 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:18:45.738 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 18:18:45.738 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:18:45.748 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 18:18:45.748 -07 000000482 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 18:18:45.748 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 18:18:45.748 -07 000000429 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 18:18:45.758 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 392 392 188 188 28441 150\n [Camera]
17-03-17 18:18:45.958 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:18:46.348 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 584
17-03-17 18:18:46.348 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 584
17-03-17 18:18:46.348 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:18:46.348 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:18:46.348 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-17 18:18:46.348 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 584
17-03-17 18:18:46.348 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 584
17-03-17 18:18:46.348 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:18:46.358 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:18:46.358 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2485095640, 0x0, 418435064) start.
17-03-17 18:18:46.538 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28441 777
17-03-17 18:18:46.578 -07 000000561 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:18:46.578 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 10. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=93, R2=102, Total=195. Warn if over 250 bubbles per interval.
17-03-17 18:18:46.688 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP turning grn on 927
17-03-17 18:18:46.738 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2485095640, 0x0, 418435064) end. Duration was 381 ms.
17-03-17 18:18:46.738 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-17 18:18:46.738 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:18:46.748 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 393 ms.
17-03-17 18:18:46.748 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-17 18:18:46.748 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:18:46.748 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:18:46.748 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:18:46.748 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 18:18:46.748 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 18:18:46.878 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1115
17-03-17 18:18:46.878 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1115
17-03-17 18:18:46.878 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:18:46.878 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1115
17-03-17 18:18:46.878 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1115
17-03-17 18:18:46.878 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:18:46.878 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:18:46.878 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 18:18:46.878 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:18:46.878 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 18:18:47.178 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP 1307
17-03-17 18:18:47.178 -07 000000561 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:18:47.178 -07 000000610 INF: FPGA: 'CAMDBLSNAP 392 392 188 188 28441 150' command took 2 ms to send, 1419 ms to get response, and 1429 ms overall
17-03-17 18:18:47.188 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 18:18:47.188 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 15 at Y-position 70.689453125, Z-Position -0.129394339555302. ------
17-03-17 18:18:47.188 -07 000000618 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:18:47.188 -07 000000438 INF: Y Motor: MoveYZ optimized starting. Moving Y to 71.5326 mm, moving Z to -0.13606 mm
17-03-17 18:18:47.188 -07 000000438 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:18:47.188 -07 000000561 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:18:47.188 -07 000000512 INF: Z Motor: Entering MoveAbsStepped (DAC = 29723, sync = True, waitForSettling = False)
17-03-17 18:18:47.188 -07 000000415 INF: Y Motor: Entering MoveAbsStepped (target = 114452 steps, sync = True, waitForSettling = True)
17-03-17 18:18:47.188 -07 000000415 INF: Y Motor: Moving to 71.5326 mm, started at 70.6895 mm, delta = 0.8432 mm
17-03-17 18:18:47.188 -07 000000512 INF: Z Motor: Moving to -0.136063 mm, started at -0.129394 mm, distance = -6.67 um
17-03-17 18:18:47.198 -07 000000618 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 18:18:47.198 -07 000000512 INF: FPGA: Xmit ZDACW 29723\n [Z Motor]
17-03-17 18:18:47.198 -07 000000561 INF: FPGA: Recv ZDACW
17-03-17 18:18:47.208 -07 000000415 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:18:47.208 -07 000000512 INF: FPGA: 'ZDACW 29723' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 18:18:47.208 -07 000000486 INF: FPGA: Recv YRDPOS 144772
17-03-17 18:18:47.218 -07 000000618 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:18:47.218 -07 000000415 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 21 ms overall
17-03-17 18:18:47.218 -07 000000415 INF: Y Motor: Encoder = 144772 = motor step 113103.1 = 70.6895 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:18:47.218 -07 000000415 INF: Y Motor: Last commanded position = 70.7026 mm (113124.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:18:47.218 -07 000000415 INF: Y Motor: Moving 1349 steps-28
17-03-17 18:18:47.228 -07 000000512 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:18:47.228 -07 000000541 INF: FPGA: Recv ZDACR 29723
17-03-17 18:18:47.238 -07 000000415 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:18:47.238 -07 000000512 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:18:47.238 -07 000000512 INF: Z Motor: MoveAbsStepped took 41 ms (did NOT wait for settling yet))
17-03-17 18:18:47.278 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 398 ms.
17-03-17 18:18:47.278 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 18:18:47.278 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:18:47.288 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 403 ms.
17-03-17 18:18:47.288 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-17 18:18:47.288 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:18:47.288 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 18:18:47.288 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-17 18:18:47.288 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 18:18:47.298 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 418 ms.
17-03-17 18:18:47.418 -07 000000448 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:18:47.418 -07 000000618 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 18:18:47.608 -07 000000429 INF: FPGA: Recv YMVTILE
17-03-17 18:18:47.608 -07 000000415 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 18:18:47.648 -07 000000415 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:18:47.648 -07 000000512 INF: FPGA: Recv YRDPOS 146473
17-03-17 18:18:47.658 -07 000000415 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:18:47.658 -07 000000415 INF: Y Motor: Encoder = 146473 = motor step 114432.0 = 71.5200 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:18:47.658 -07 000000415 INF: Y Motor: Position error before settling (table move) = -26 encoder counts (-0.013 mm)
17-03-17 18:18:47.658 -07 000000415 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.843 mm, average velocity = 2.124 mm/sec
17-03-17 18:18:48.608 -07 000000415 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:18:48.608 -07 000000478 INF: FPGA: Recv YRDPOS 146473
17-03-17 18:18:48.618 -07 000000415 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:18:48.618 -07 000000415 INF: Y Motor: Encoder = 146473 = motor step 114432.0 = 71.5200 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:18:48.638 -07 000000415 INF: Y Motor: After move to 71.532608, error = -0.012589, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:18:48.638 -07 000000415 INF: Y Motor: Position error after settling (table move) = -26 encoder counts (-0.013 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:18:48.638 -07 000000415 INF: Y Motor: Moved to 71.5200 after 1444 ms (table move)
17-03-17 18:18:48.638 -07 000000438 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136063 mm (DAC = 29723)
17-03-17 18:18:48.638 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:18:48.648 -07 000000486 INF: FPGA: Recv ZSGSRD 30471
17-03-17 18:18:48.648 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 18:18:48.648 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:18:48.648 -07 000000429 INF: FPGA: Recv ZSGSRD 30466
17-03-17 18:18:48.658 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:18:48.658 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:18:48.658 -07 000000459 INF: FPGA: Recv ZSGSRD 30463
17-03-17 18:18:48.668 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:18:48.668 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:18:48.668 -07 000000429 INF: FPGA: Recv ZSGSRD 30468
17-03-17 18:18:48.678 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:18:48.678 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:18:48.678 -07 000000382 INF: FPGA: Recv ZSGSRD 30469
17-03-17 18:18:48.688 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:18:48.688 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:18:48.688 -07 000000478 INF: FPGA: Recv ZSGSRD 30475
17-03-17 18:18:48.698 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:18:48.698 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:18:48.698 -07 000000382 INF: FPGA: Recv ZSGSRD 30478
17-03-17 18:18:48.708 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:18:48.708 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:18:48.708 -07 000000448 INF: FPGA: Recv ZSGSRD 30466
17-03-17 18:18:48.718 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:18:48.718 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:18:48.718 -07 000000459 INF: FPGA: Recv ZSGSRD 30466
17-03-17 18:18:48.728 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:18:48.728 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:18:48.728 -07 000000448 INF: FPGA: Recv ZSGSRD 30466
17-03-17 18:18:48.738 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:18:48.738 -07 000000438 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:18:48.738 -07 000000415 INF: FPGA: Recv ZPIEZORD 26375
17-03-17 18:18:48.748 -07 000000438 INF: FPGA: 'ZPIEZORD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:18:48.748 -07 000000438 INF: Z Motor: Piezo is near 36.3 V (nominally 0 to 100 V), expect near 45.4 V, since DAC is at 4.535 V. Piezo Error = -9.0 V.
17-03-17 18:18:48.748 -07 000000438 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.1 um, Read 10 ADC samples: Avg = 30469 (-135.3 uncal um), Error = 0.8 uncal um, Median = 30467 (-135.3 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 30463 (-135.2 uncal um), Max = 30478 (-135.3 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 18:18:48.748 -07 000000438 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30469, posNoise = 9, negNoise = 6
17-03-17 18:18:48.748 -07 000000438 INF: Z Motor: After move to -0.136063, error = 0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:18:48.748 -07 000000438 INF: Z Motor: Settle wait time = 1449 ms, measure time = 108 ms (allowed 150 ms), total time = 1557 ms
17-03-17 18:18:48.748 -07 000000438 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-17 18:18:48.798 -07 000000438 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1605 ms
17-03-17 18:18:48.798 -07 000000438 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:18:48.798 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:18:48.798 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:18:48.798 -07 000000486 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:18:48.798 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:18:48.798 -07 000000415 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:18:48.798 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:18:48.808 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 18:18:48.808 -07 000000415 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:18:48.808 -07 000000415 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:18:48.808 -07 000000415 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:18:48.818 -07 000000415 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 18:18:48.818 -07 000000415 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 13 ms.
17-03-17 18:18:48.818 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:18:48.858 -07 000000438 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:18:49.058 -07 000000478 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:18:49.058 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:18:49.058 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:18:49.068 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-17 18:18:49.098 -07 000000561 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:18:49.098 -07 000000569 INF: FPGA: Recv CAMSNAP
17-03-17 18:18:49.098 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 279 ms to get response, and 285 ms overall
17-03-17 18:18:49.178 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 18:18:49.178 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:18:49.178 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 18:18:49.178 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 18:18:49.198 -07 000000478 INF: Autofocus start
17-03-17 18:18:49.198 -07 000000478 INF: MeasureProfile start
17-03-17 18:18:49.198 -07 000000459 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:18:49.198 -07 000000429 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:18:49.208 -07 000000459 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:18:49.208 -07 000000459 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:18:49.218 -07 000000478 INF: MeasureProfile done
17-03-17 18:18:49.218 -07 000000478 INF: X=-16  Z correction [um]=-0.08128808
17-03-17 18:18:49.218 -07 000000478 INF: Autofocus finished
17-03-17 18:18:49.298 -07 000000618 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 11, FrontChillerTemperature: 4.030322,
17-03-17 18:18:49.408 -07 000000448 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:18:49.408 -07 000000459 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:18:49.408 -07 000000610 INF: ------------ Scan Snapping tile 15 at Y-position 71.52001953125, Z-position -0.13606267175845. ----------
17-03-17 18:18:49.408 -07 000000610 INF: Cycle	11	Tile	15	Exposure Settings		A	392	G	188	T	188	C	392
17-03-17 18:18:49.418 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28218, sync = True, waitForSettling = True)
17-03-17 18:18:49.418 -07 000000610 INF: Z Motor: Moving to -0.129174 mm, started at -0.136063 mm, distance = 6.89 um
17-03-17 18:18:49.418 -07 000000610 INF: FPGA: Xmit ZDACW 28218\n [Z Motor]
17-03-17 18:18:49.418 -07 000000561 INF: FPGA: Recv ZDACW
17-03-17 18:18:49.428 -07 000000610 INF: FPGA: 'ZDACW 28218' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:18:49.428 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:18:49.428 -07 000000415 INF: FPGA: Recv ZDACR 28218
17-03-17 18:18:49.438 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:18:49.438 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:18:49.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:18:49.588 -07 000000415 INF: FPGA: Recv ZSGSRD 29403
17-03-17 18:18:49.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:18:49.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:18:49.598 -07 000000618 INF: FPGA: Recv ZSGSRD 29394
17-03-17 18:18:49.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:18:49.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:18:49.608 -07 000000569 INF: FPGA: Recv ZSGSRD 29393
17-03-17 18:18:49.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:18:49.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:18:49.618 -07 000000541 INF: FPGA: Recv ZSGSRD 29407
17-03-17 18:18:49.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:18:49.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:18:49.628 -07 000000429 INF: FPGA: Recv ZSGSRD 29400
17-03-17 18:18:49.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:18:49.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:18:49.638 -07 000000478 INF: FPGA: Recv ZSGSRD 29397
17-03-17 18:18:49.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:18:49.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:18:49.648 -07 000000541 INF: FPGA: Recv ZSGSRD 29400
17-03-17 18:18:49.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:18:49.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:18:49.658 -07 000000448 INF: FPGA: Recv ZSGSRD 29400
17-03-17 18:18:49.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:18:49.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:18:49.668 -07 000000431 INF: FPGA: Recv ZSGSRD 29399
17-03-17 18:18:49.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:18:49.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:18:49.678 -07 000000541 INF: FPGA: Recv ZSGSRD 29393
17-03-17 18:18:49.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:18:49.688 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:18:49.688 -07 000000438 INF: FPGA: Recv ZPIEZORD 24946
17-03-17 18:18:49.698 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:18:49.698 -07 000000610 INF: Z Motor: Piezo is near 33.3 V (nominally 0 to 100 V), expect near 43.1 V, since DAC is at 4.306 V. Piezo Error = -9.8 V.
17-03-17 18:18:49.698 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.2 um, Read 10 ADC samples: Avg = 29399 (-128.4 uncal um), Error = 0.8 uncal um, Median = 29400 (-128.4 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 29393 (-128.4 uncal um), Max = 29407 (-128.5 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 18:18:49.698 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29399, posNoise = 8, negNoise = 6
17-03-17 18:18:49.698 -07 000000610 INF: Z Motor: After move to -0.129174, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:18:49.698 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 18:18:49.698 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:18:49.698 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:18:49.698 -07 000000459 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:18:49.698 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:18:49.698 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:18:49.698 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:18:49.698 -07 000000482 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:18:49.698 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:18:49.698 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 18:18:49.698 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:18:49.698 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:18:49.698 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:18:49.708 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 18:18:49.708 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:18:49.708 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 18:18:49.708 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:18:49.708 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 18:18:49.708 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 12 ms.
17-03-17 18:18:49.718 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 18:18:49.718 -07 000000482 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 18:18:49.718 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 392 392 188 188 28394 150\n [Camera]
17-03-17 18:18:49.918 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:18:50.308 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 584
17-03-17 18:18:50.308 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 584
17-03-17 18:18:50.308 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:18:50.308 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 584
17-03-17 18:18:50.308 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 584
17-03-17 18:18:50.308 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:18:50.308 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:18:50.308 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2485095640, 0x0, 418435064) start.
17-03-17 18:18:50.318 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:18:50.318 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-17 18:18:50.498 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28394 777
17-03-17 18:18:50.648 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP turning grn on 928
17-03-17 18:18:50.688 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 372 ms.
17-03-17 18:18:50.688 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 373 ms.
17-03-17 18:18:50.688 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:18:50.688 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2485095640, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 18:18:50.688 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-17 18:18:50.688 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:18:50.688 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:18:50.688 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 18:18:50.698 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 18:18:50.698 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 18:18:50.838 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1115
17-03-17 18:18:50.838 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1115
17-03-17 18:18:50.838 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:18:50.838 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1115
17-03-17 18:18:50.838 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1115
17-03-17 18:18:50.838 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:18:50.838 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 1441468064, 0x0, 391868352) start.
17-03-17 18:18:50.848 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:18:50.848 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:18:50.848 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 1476890328, 0x0, 418435064) start.
17-03-17 18:18:51.028 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP 1307
17-03-17 18:18:51.028 -07 000000512 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:18:51.028 -07 000000610 INF: FPGA: 'CAMDBLSNAP 392 392 188 188 28394 150' command took 2 ms to send, 1307 ms to get response, and 1314 ms overall
17-03-17 18:18:51.038 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 18:18:51.038 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 16 at Y-position 71.52001953125, Z-Position -0.129188764766765. ------
17-03-17 18:18:51.038 -07 000000482 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:18:51.038 -07 000000478 INF: Y Motor: MoveYZ optimized starting. Moving Y to 72.3626 mm, moving Z to -0.13518 mm
17-03-17 18:18:51.038 -07 000000478 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:18:51.038 -07 000000415 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:18:51.038 -07 000000459 INF: Z Motor: Entering MoveAbsStepped (DAC = 29530, sync = True, waitForSettling = False)
17-03-17 18:18:51.038 -07 000000459 INF: Z Motor: Moving to -0.135180 mm, started at -0.129189 mm, distance = -5.99 um
17-03-17 18:18:51.038 -07 000000512 INF: Y Motor: Entering MoveAbsStepped (target = 115780 steps, sync = True, waitForSettling = True)
17-03-17 18:18:51.048 -07 000000512 INF: Y Motor: Moving to 72.3626 mm, started at 71.5200 mm, delta = 0.8426 mm
17-03-17 18:18:51.048 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:18:51.048 -07 000000482 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:18:51.048 -07 000000415 INF: FPGA: Recv YRDPOS 146473
17-03-17 18:18:51.058 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:18:51.058 -07 000000512 INF: Y Motor: Encoder = 146473 = motor step 114432.0 = 71.5200 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:18:51.058 -07 000000482 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:18:51.058 -07 000000512 INF: Y Motor: Last commanded position = 71.5326 mm (114452.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:18:51.058 -07 000000512 INF: Y Motor: Moving 1348 steps-26
17-03-17 18:18:51.068 -07 000000459 INF: FPGA: Xmit ZDACW 29530\n [Z Motor]
17-03-17 18:18:51.068 -07 000000415 INF: FPGA: Recv ZDACW
17-03-17 18:18:51.078 -07 000000512 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:18:51.078 -07 000000459 INF: FPGA: 'ZDACW 29530' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-17 18:18:51.088 -07 000000459 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:18:51.088 -07 000000569 INF: FPGA: Recv ZDACR 29530
17-03-17 18:18:51.098 -07 000000459 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 18:18:51.098 -07 000000459 INF: Z Motor: MoveAbsStepped took 50 ms (did NOT wait for settling yet))
17-03-17 18:18:51.218 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 1476890328, 0x0, 418435064) end. Duration was 376 ms.
17-03-17 18:18:51.218 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-17 18:18:51.218 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:18:51.228 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 1441468064, 0x0, 391868352) end. Duration was 380 ms.
17-03-17 18:18:51.228 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 18:18:51.228 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:18:51.228 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:18:51.228 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:18:51.228 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 18:18:51.228 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 18:18:51.258 -07 000000415 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:18:51.258 -07 000000482 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 198 ms to get response, and 218 ms overall
17-03-17 18:18:51.448 -07 000000459 INF: FPGA: Recv YMVTILE
17-03-17 18:18:51.518 -07 000000512 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 435 ms to get response, and 464 ms overall
17-03-17 18:18:51.558 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:18:51.558 -07 000000459 INF: FPGA: Recv YRDPOS 148173
17-03-17 18:18:51.568 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:18:51.568 -07 000000512 INF: Y Motor: Encoder = 148173 = motor step 115760.2 = 72.3501 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:18:51.568 -07 000000512 INF: Y Motor: Position error before settling (table move) = -26 encoder counts (-0.013 mm)
17-03-17 18:18:51.568 -07 000000512 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 464 ms, distance = 0.843 mm, average velocity = 1.816 mm/sec
17-03-17 18:18:51.578 -07 000000415 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:18:51.578 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 10. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=93, R2=102, Total=195. Warn if over 250 bubbles per interval.
17-03-17 18:18:52.518 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:18:52.518 -07 000000448 INF: FPGA: Recv YRDPOS 148173
17-03-17 18:18:52.528 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:18:52.528 -07 000000512 INF: Y Motor: Encoder = 148173 = motor step 115760.2 = 72.3501 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:18:52.548 -07 000000512 INF: Y Motor: After move to 72.362610, error = -0.012512, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:18:52.548 -07 000000512 INF: Y Motor: Position error after settling (table move) = -26 encoder counts (-0.013 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:18:52.548 -07 000000512 INF: Y Motor: Moved to 72.3501 after 1501 ms (table move)
17-03-17 18:18:52.548 -07 000000478 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135180 mm (DAC = 29530)
17-03-17 18:18:52.548 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:18:52.548 -07 000000448 INF: FPGA: Recv ZSGSRD 30331
17-03-17 18:18:52.558 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 18:18:52.558 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:18:52.558 -07 000000569 INF: FPGA: Recv ZSGSRD 30334
17-03-17 18:18:52.568 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:18:52.568 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:18:52.568 -07 000000415 INF: FPGA: Recv ZSGSRD 30329
17-03-17 18:18:52.578 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:18:52.578 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:18:52.578 -07 000000482 INF: FPGA: Recv ZSGSRD 30337
17-03-17 18:18:52.588 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:18:52.588 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:18:52.588 -07 000000448 INF: FPGA: Recv ZSGSRD 30328
17-03-17 18:18:52.598 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:18:52.598 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:18:52.598 -07 000000415 INF: FPGA: Recv ZSGSRD 30329
17-03-17 18:18:52.608 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:18:52.608 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:18:52.608 -07 000000569 INF: FPGA: Recv ZSGSRD 30341
17-03-17 18:18:52.618 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:18:52.618 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:18:52.618 -07 000000482 INF: FPGA: Recv ZSGSRD 30336
17-03-17 18:18:52.628 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:18:52.628 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:18:52.628 -07 000000448 INF: FPGA: Recv ZSGSRD 30336
17-03-17 18:18:52.638 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:18:52.638 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:18:52.638 -07 000000459 INF: FPGA: Recv ZSGSRD 30335
17-03-17 18:18:52.648 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:18:52.648 -07 000000478 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:18:52.648 -07 000000429 INF: FPGA: Recv ZPIEZORD 26194
17-03-17 18:18:52.658 -07 000000478 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:18:52.658 -07 000000478 INF: Z Motor: Piezo is near 36.0 V (nominally 0 to 100 V), expect near 45.1 V, since DAC is at 4.506 V. Piezo Error = -9.1 V.
17-03-17 18:18:52.658 -07 000000478 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.2 um, Read 10 ADC samples: Avg = 30334 (-134.4 uncal um), Error = 0.8 uncal um, Median = 30334 (-134.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 30328 (-134.4 uncal um), Max = 30341 (-134.4 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 18:18:52.658 -07 000000478 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30334, posNoise = 7, negNoise = 6
17-03-17 18:18:52.658 -07 000000478 INF: Z Motor: After move to -0.135180, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:18:52.658 -07 000000478 INF: Z Motor: Settle wait time = 1506 ms, measure time = 105 ms (allowed 150 ms), total time = 1611 ms
17-03-17 18:18:52.658 -07 000000478 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 18:18:52.708 -07 000000478 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1665 ms
17-03-17 18:18:52.708 -07 000000478 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:18:52.708 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:18:52.708 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:18:52.708 -07 000000459 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:18:52.708 -07 000000415 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:18:52.708 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:18:52.708 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:18:52.718 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 18:18:52.718 -07 000000415 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:18:52.718 -07 000000415 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:18:52.718 -07 000000415 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:18:52.718 -07 000000415 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 18:18:52.718 -07 000000415 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-17 18:18:52.728 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:18:52.768 -07 000000448 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:18:52.968 -07 000000448 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:18:52.968 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:18:52.968 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:18:52.968 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 675221432, 0x0, 559484976) start.
17-03-17 18:18:53.008 -07 000000415 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:18:53.008 -07 000000433 INF: FPGA: Recv CAMSNAP
17-03-17 18:18:53.008 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 276 ms to get response, and 284 ms overall
17-03-17 18:18:53.088 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 675221432, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 18:18:53.088 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:18:53.088 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 18:18:53.088 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 18:18:53.108 -07 000000448 INF: Autofocus start
17-03-17 18:18:53.108 -07 000000448 INF: MeasureProfile start
17-03-17 18:18:53.108 -07 000000482 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:18:53.108 -07 000000415 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:18:53.118 -07 000000482 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 18:18:53.118 -07 000000482 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:18:53.118 -07 000000448 INF: MeasureProfile done
17-03-17 18:18:53.118 -07 000000448 INF: X=16  Z correction [um]=0.0530179
17-03-17 18:18:53.118 -07 000000448 INF: Autofocus finished
17-03-17 18:18:53.318 -07 000000569 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:18:53.318 -07 000000482 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:18:53.318 -07 000000610 INF: ------------ Scan Snapping tile 16 at Y-position 72.35009765625, Z-position -0.135195403119312. ----------
17-03-17 18:18:53.328 -07 000000610 INF: Cycle	11	Tile	16	Exposure Settings		A	392	G	188	T	188	C	392
17-03-17 18:18:53.328 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28055, sync = True, waitForSettling = True)
17-03-17 18:18:53.328 -07 000000610 INF: Z Motor: Moving to -0.128428 mm, started at -0.135195 mm, distance = 6.77 um
17-03-17 18:18:53.328 -07 000000610 INF: FPGA: Xmit ZDACW 28055\n [Z Motor]
17-03-17 18:18:53.328 -07 000000569 INF: FPGA: Recv ZDACW
17-03-17 18:18:53.338 -07 000000610 INF: FPGA: 'ZDACW 28055' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 18:18:53.338 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:18:53.338 -07 000000415 INF: FPGA: Recv ZDACR 28055
17-03-17 18:18:53.348 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:18:53.348 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:18:53.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:18:53.498 -07 000000429 INF: FPGA: Recv ZSGSRD 29279
17-03-17 18:18:53.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:18:53.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:18:53.508 -07 000000482 INF: FPGA: Recv ZSGSRD 29282
17-03-17 18:18:53.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:18:53.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:18:53.518 -07 000000459 INF: FPGA: Recv ZSGSRD 29281
17-03-17 18:18:53.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:18:53.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:18:53.528 -07 000000482 INF: FPGA: Recv ZSGSRD 29282
17-03-17 18:18:53.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:18:53.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:18:53.538 -07 000000512 INF: FPGA: Recv ZSGSRD 29281
17-03-17 18:18:53.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:18:53.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:18:53.548 -07 000000512 INF: FPGA: Recv ZSGSRD 29282
17-03-17 18:18:53.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:18:53.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:18:53.558 -07 000000448 INF: FPGA: Recv ZSGSRD 29279
17-03-17 18:18:53.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:18:53.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:18:53.568 -07 000000429 INF: FPGA: Recv ZSGSRD 29282
17-03-17 18:18:53.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:18:53.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:18:53.578 -07 000000569 INF: FPGA: Recv ZSGSRD 29283
17-03-17 18:18:53.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:18:53.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:18:53.588 -07 000000459 INF: FPGA: Recv ZSGSRD 29279
17-03-17 18:18:53.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:18:53.598 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:18:53.598 -07 000000482 INF: FPGA: Recv ZPIEZORD 24834
17-03-17 18:18:53.608 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:18:53.608 -07 000000610 INF: Z Motor: Piezo is near 33.1 V (nominally 0 to 100 V), expect near 42.8 V, since DAC is at 4.281 V. Piezo Error = -9.8 V.
17-03-17 18:18:53.608 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.4 um, Read 10 ADC samples: Avg = 29281 (-127.7 uncal um), Error = 0.8 uncal um, Median = 29282 (-127.7 uncal um), StdDev = 1 (0.0 uncal um), Range = 4 (0.0 uncal um), Min = 29279 (-127.6 uncal um), Max = 29283 (-127.7 uncal um), Pos Noise = 2 (0.0 uncal um), Neg Noise = 2 (0.0 uncal um)
17-03-17 18:18:53.608 -07 000000610 INF: Z Motor: ADC noise = 2, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29281, posNoise = 2, negNoise = 2
17-03-17 18:18:53.608 -07 000000610 INF: Z Motor: After move to -0.128428, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:18:53.608 -07 000000610 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-17 18:18:53.608 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:18:53.608 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:18:53.608 -07 000000459 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:18:53.608 -07 000000448 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:18:53.608 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:18:53.608 -07 000000478 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:18:53.608 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:18:53.608 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:18:53.608 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 18:18:53.608 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:18:53.608 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:18:53.608 -07 000000448 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:18:53.618 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 18:18:53.618 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:18:53.618 -07 000000448 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 18:18:53.618 -07 000000448 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:18:53.628 -07 000000448 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 18:18:53.628 -07 000000448 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 18:18:53.628 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 18:18:53.628 -07 000000478 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 18:18:53.628 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 392 392 188 188 28231 150\n [Camera]
17-03-17 18:18:53.828 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:18:54.218 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 584
17-03-17 18:18:54.218 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 584
17-03-17 18:18:54.218 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:18:54.218 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:18:54.218 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 1055068208, 0x0, 391868352) start.
17-03-17 18:18:54.218 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 584
17-03-17 18:18:54.218 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 584
17-03-17 18:18:54.218 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:18:54.218 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:18:54.218 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 1090490472, 0x0, 418435064) start.
17-03-17 18:18:54.408 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28231 777
17-03-17 18:18:54.558 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning grn on 927
17-03-17 18:18:54.598 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 1090490472, 0x0, 418435064) end. Duration was 372 ms.
17-03-17 18:18:54.598 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 372 ms.
17-03-17 18:18:54.598 -07 000000433 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:18:54.598 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 1055068208, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 18:18:54.598 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 18:18:54.598 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:18:54.598 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:18:54.598 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:18:54.598 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 18:18:54.608 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-17 18:18:54.658 -07 000000429 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 11, FrontChillerTemperature: 4.038479,
17-03-17 18:18:54.748 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1115
17-03-17 18:18:54.748 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1115
17-03-17 18:18:54.748 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:18:54.748 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:18:54.748 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 1125912736, 0x0, 391868352) start.
17-03-17 18:18:54.758 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1115
17-03-17 18:18:54.758 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1115
17-03-17 18:18:54.758 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:18:54.758 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:18:54.758 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 18:18:54.938 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP 1307
17-03-17 18:18:54.938 -07 000000415 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:18:54.938 -07 000000610 INF: FPGA: 'CAMDBLSNAP 392 392 188 188 28231 150' command took 2 ms to send, 1308 ms to get response, and 1314 ms overall
17-03-17 18:18:54.948 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 18:18:54.948 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 17 at Y-position 72.35009765625, Z-Position -0.128430707734038. ------
17-03-17 18:18:54.948 -07 000000482 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:18:54.948 -07 000000433 INF: Y Motor: MoveYZ optimized starting. Moving Y to 73.1926 mm, moving Z to -0.13504 mm
17-03-17 18:18:54.948 -07 000000433 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:18:55.068 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:18:55.068 -07 000000482 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 120 ms overall
17-03-17 18:18:55.068 -07 000000478 INF: Y Motor: Entering MoveAbsStepped (target = 117108 steps, sync = True, waitForSettling = True)
17-03-17 18:18:55.068 -07 000000478 INF: Y Motor: Moving to 73.1926 mm, started at 72.3501 mm, delta = 0.8425 mm
17-03-17 18:18:55.068 -07 000000482 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:18:55.068 -07 000000415 INF: Z Motor: Entering MoveAbsStepped (DAC = 29500, sync = True, waitForSettling = False)
17-03-17 18:18:55.068 -07 000000415 INF: Z Motor: Moving to -0.135042 mm, started at -0.128431 mm, distance = -6.61 um
17-03-17 18:18:55.078 -07 000000478 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:18:55.078 -07 000000448 INF: FPGA: Recv YRDPOS 148174
17-03-17 18:18:55.088 -07 000000415 INF: FPGA: Xmit ZDACW 29500\n [Z Motor]
17-03-17 18:18:55.088 -07 000000478 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-17 18:18:55.088 -07 000000478 INF: Y Motor: Encoder = 148174 = motor step 115760.9 = 72.3506 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:18:55.088 -07 000000502 INF: FPGA: Recv ZDACW
17-03-17 18:18:55.088 -07 000000478 INF: Y Motor: Last commanded position = 72.3626 mm (115780.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:18:55.088 -07 000000478 INF: Y Motor: Moving 1347 steps-26
17-03-17 18:18:55.098 -07 000000415 INF: FPGA: 'ZDACW 29500' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-17 18:18:55.098 -07 000000478 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:18:55.108 -07 000000415 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:18:55.108 -07 000000627 INF: FPGA: Recv ZDACR 29500
17-03-17 18:18:55.118 -07 000000415 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 18:18:55.118 -07 000000415 INF: Z Motor: MoveAbsStepped took 44 ms (did NOT wait for settling yet))
17-03-17 18:18:55.138 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 1125912736, 0x0, 391868352) end. Duration was 389 ms.
17-03-17 18:18:55.138 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 18:18:55.138 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:18:55.138 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 387 ms.
17-03-17 18:18:55.138 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 18:18:55.138 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:18:55.148 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:18:55.148 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 9 ms.
17-03-17 18:18:55.148 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 18:18:55.158 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-17 18:18:55.268 -07 000000448 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:18:55.268 -07 000000482 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 197 ms to get response, and 202 ms overall
17-03-17 18:18:55.468 -07 000000415 INF: FPGA: Recv YMVTILE
17-03-17 18:18:55.468 -07 000000478 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 382 ms overall
17-03-17 18:18:55.508 -07 000000478 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:18:55.508 -07 000000482 INF: FPGA: Recv YRDPOS 149866
17-03-17 18:18:55.518 -07 000000478 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:18:55.518 -07 000000478 INF: Y Motor: Encoder = 149866 = motor step 117082.8 = 73.1768 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:18:55.518 -07 000000478 INF: Y Motor: Position error before settling (table move) = -32 encoder counts (-0.016 mm)
17-03-17 18:18:55.518 -07 000000478 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 382 ms, distance = 0.843 mm, average velocity = 2.206 mm/sec
17-03-17 18:18:56.468 -07 000000478 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:18:56.468 -07 000000459 INF: FPGA: Recv YRDPOS 149866
17-03-17 18:18:56.478 -07 000000478 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:18:56.478 -07 000000478 INF: Y Motor: Encoder = 149866 = motor step 117082.8 = 73.1768 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:18:56.488 -07 000000478 INF: Y Motor: After move to 73.192604, error = -0.015846, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:18:56.498 -07 000000478 INF: Y Motor: Position error after settling (table move) = -32 encoder counts (-0.016 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:18:56.498 -07 000000478 INF: Y Motor: Moved to 73.1768 after 1425 ms (table move)
17-03-17 18:18:56.498 -07 000000433 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135042 mm (DAC = 29500)
17-03-17 18:18:56.498 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:18:56.498 -07 000000482 INF: FPGA: Recv ZSGSRD 30307
17-03-17 18:18:56.508 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 18:18:56.508 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:18:56.508 -07 000000415 INF: FPGA: Recv ZSGSRD 30303
17-03-17 18:18:56.518 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:18:56.518 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:18:56.518 -07 000000482 INF: FPGA: Recv ZSGSRD 30308
17-03-17 18:18:56.528 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:18:56.528 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:18:56.528 -07 000000569 INF: FPGA: Recv ZSGSRD 30320
17-03-17 18:18:56.538 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:18:56.538 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:18:56.538 -07 000000415 INF: FPGA: Recv ZSGSRD 30315
17-03-17 18:18:56.548 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:18:56.548 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:18:56.548 -07 000000569 INF: FPGA: Recv ZSGSRD 30315
17-03-17 18:18:56.558 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:18:56.558 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:18:56.558 -07 000000482 INF: FPGA: Recv ZSGSRD 30313
17-03-17 18:18:56.568 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:18:56.568 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:18:56.568 -07 000000415 INF: FPGA: Recv ZSGSRD 30315
17-03-17 18:18:56.578 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:18:56.578 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:18:56.578 -07 000000569 INF: FPGA: Recv ZSGSRD 30306
17-03-17 18:18:56.578 -07 000000569 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:18:56.578 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 10. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=93, R2=102, Total=195. Warn if over 250 bubbles per interval.
17-03-17 18:18:56.588 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:18:56.588 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:18:56.588 -07 000000429 INF: FPGA: Recv ZSGSRD 30312
17-03-17 18:18:56.598 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:18:56.598 -07 000000433 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:18:56.598 -07 000000482 INF: FPGA: Recv ZPIEZORD 26213
17-03-17 18:18:56.608 -07 000000433 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:18:56.608 -07 000000433 INF: Z Motor: Piezo is near 36.0 V (nominally 0 to 100 V), expect near 45.0 V, since DAC is at 4.501 V. Piezo Error = -9.0 V.
17-03-17 18:18:56.608 -07 000000433 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.0 um, Read 10 ADC samples: Avg = 30311 (-134.3 uncal um), Error = 0.8 uncal um, Median = 30312 (-134.3 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 30303 (-134.2 uncal um), Max = 30320 (-134.3 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 18:18:56.608 -07 000000433 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30311, posNoise = 9, negNoise = 8
17-03-17 18:18:56.608 -07 000000433 INF: Z Motor: After move to -0.135042, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:18:56.608 -07 000000433 INF: Z Motor: Settle wait time = 1428 ms, measure time = 107 ms (allowed 150 ms), total time = 1535 ms
17-03-17 18:18:56.608 -07 000000433 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-17 18:18:56.658 -07 000000433 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1705 ms
17-03-17 18:18:56.658 -07 000000433 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:18:56.658 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:18:56.658 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:18:56.658 -07 000000429 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:18:56.658 -07 000000478 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:18:56.658 -07 000000459 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:18:56.658 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:18:56.658 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:18:56.658 -07 000000459 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:18:56.668 -07 000000459 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:18:56.668 -07 000000459 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:18:56.668 -07 000000459 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 18:18:56.668 -07 000000459 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 18:18:56.678 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:18:56.718 -07 000000415 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:18:56.918 -07 000000482 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:18:56.918 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:18:56.918 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:18:56.918 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-17 18:18:56.958 -07 000000482 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:18:56.958 -07 000000478 INF: FPGA: Recv CAMSNAP
17-03-17 18:18:56.958 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 276 ms to get response, and 284 ms overall
17-03-17 18:18:57.038 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 119 ms.
17-03-17 18:18:57.048 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:18:57.048 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-17 18:18:57.048 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 124 ms.
17-03-17 18:18:57.058 -07 000000429 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:18:57.058 -07 000000478 INF: Autofocus start
17-03-17 18:18:57.058 -07 000000478 INF: MeasureProfile start
17-03-17 18:18:57.058 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:18:57.068 -07 000000429 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:18:57.068 -07 000000429 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:18:57.068 -07 000000478 INF: MeasureProfile done
17-03-17 18:18:57.068 -07 000000478 INF: X=-32  Z correction [um]=-0.1591732
17-03-17 18:18:57.068 -07 000000478 INF: Autofocus finished
17-03-17 18:18:57.268 -07 000000482 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:18:57.268 -07 000000429 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:18:57.268 -07 000000610 INF: ------------ Scan Snapping tile 17 at Y-position 73.1767578125, Z-position -0.135047646240051. ----------
17-03-17 18:18:57.278 -07 000000610 INF: Cycle	11	Tile	17	Exposure Settings		A	392	G	188	T	188	C	392
17-03-17 18:18:57.278 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27978, sync = True, waitForSettling = True)
17-03-17 18:18:57.278 -07 000000610 INF: Z Motor: Moving to -0.128075 mm, started at -0.135048 mm, distance = 6.97 um
17-03-17 18:18:57.278 -07 000000610 INF: FPGA: Xmit ZDACW 27978\n [Z Motor]
17-03-17 18:18:57.278 -07 000000429 INF: FPGA: Recv ZDACW
17-03-17 18:18:57.288 -07 000000610 INF: FPGA: 'ZDACW 27978' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:18:57.288 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:18:57.288 -07 000000448 INF: FPGA: Recv ZDACR 27978
17-03-17 18:18:57.298 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:18:57.298 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:18:57.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:18:57.448 -07 000000482 INF: FPGA: Recv ZSGSRD 29226
17-03-17 18:18:57.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:18:57.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:18:57.458 -07 000000569 INF: FPGA: Recv ZSGSRD 29230
17-03-17 18:18:57.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:18:57.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:18:57.468 -07 000000415 INF: FPGA: Recv ZSGSRD 29229
17-03-17 18:18:57.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:18:57.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:18:57.478 -07 000000448 INF: FPGA: Recv ZSGSRD 29229
17-03-17 18:18:57.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:18:57.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:18:57.488 -07 000000415 INF: FPGA: Recv ZSGSRD 29223
17-03-17 18:18:57.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:18:57.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:18:57.498 -07 000000569 INF: FPGA: Recv ZSGSRD 29225
17-03-17 18:18:57.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:18:57.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:18:57.508 -07 000000482 INF: FPGA: Recv ZSGSRD 29231
17-03-17 18:18:57.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:18:57.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:18:57.518 -07 000000448 INF: FPGA: Recv ZSGSRD 29231
17-03-17 18:18:57.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:18:57.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:18:57.528 -07 000000415 INF: FPGA: Recv ZSGSRD 29227
17-03-17 18:18:57.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:18:57.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:18:57.538 -07 000000569 INF: FPGA: Recv ZSGSRD 29225
17-03-17 18:18:57.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:18:57.548 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:18:57.548 -07 000000433 INF: FPGA: Recv ZPIEZORD 24750
17-03-17 18:18:57.558 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:18:57.558 -07 000000610 INF: Z Motor: Piezo is near 32.9 V (nominally 0 to 100 V), expect near 42.7 V, since DAC is at 4.269 V. Piezo Error = -9.8 V.
17-03-17 18:18:57.558 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.1 um, Read 10 ADC samples: Avg = 29228 (-127.3 uncal um), Error = 0.8 uncal um, Median = 29228 (-127.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 29223 (-127.3 uncal um), Max = 29231 (-127.3 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 18:18:57.558 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29228, posNoise = 3, negNoise = 5
17-03-17 18:18:57.558 -07 000000610 INF: Z Motor: After move to -0.128075, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:18:57.558 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 18:18:57.558 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:18:57.558 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:18:57.558 -07 000000433 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:18:57.558 -07 000000415 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:18:57.558 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:18:57.558 -07 000000448 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:18:57.558 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:18:57.558 -07 000000478 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:18:57.558 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:18:57.558 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:18:57.558 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:18:57.558 -07 000000448 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:18:57.568 -07 000000448 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 18:18:57.568 -07 000000448 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:18:57.568 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 18:18:57.568 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:18:57.578 -07 000000448 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 18:18:57.578 -07 000000448 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 18:18:57.578 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 18:18:57.578 -07 000000415 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 18:18:57.578 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 392 392 188 188 28154 150\n [Camera]
17-03-17 18:18:57.778 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:18:58.178 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 584
17-03-17 18:18:58.178 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 584
17-03-17 18:18:58.178 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:18:58.178 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 584
17-03-17 18:18:58.178 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 584
17-03-17 18:18:58.178 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:18:58.178 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:18:58.178 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-17 18:18:58.188 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:18:58.188 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 2485095640, 0x0, 418435064) start.
17-03-17 18:18:58.368 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28154 777
17-03-17 18:18:58.518 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP turning grn on 927
17-03-17 18:18:58.578 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 394 ms.
17-03-17 18:18:58.578 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 18:18:58.578 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:18:58.578 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:18:58.578 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-17 18:18:58.578 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 2485095640, 0x0, 418435064) end. Duration was 394 ms.
17-03-17 18:18:58.578 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 18:18:58.578 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:18:58.588 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:18:58.588 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-17 18:18:58.708 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1115
17-03-17 18:18:58.708 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1115
17-03-17 18:18:58.708 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:18:58.708 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1115
17-03-17 18:18:58.708 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1115
17-03-17 18:18:58.708 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:18:58.718 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:18:58.718 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 1055068208, 0x0, 391868352) start.
17-03-17 18:18:58.718 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:18:58.718 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 1090490472, 0x0, 418435064) start.
17-03-17 18:18:58.898 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP 1307
17-03-17 18:18:58.898 -07 000000429 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:18:58.898 -07 000000610 INF: FPGA: 'CAMDBLSNAP 392 392 188 188 28154 150' command took 2 ms to send, 1304 ms to get response, and 1315 ms overall
17-03-17 18:18:58.898 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 18:18:58.898 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 18 at Y-position 73.1767578125, Z-Position -0.128090224490524. ------
17-03-17 18:18:58.898 -07 000000433 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:18:58.898 -07 000000429 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.0226 mm, moving Z to -0.13446 mm
17-03-17 18:18:58.898 -07 000000429 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:18:59.018 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:18:59.018 -07 000000433 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 115 ms overall
17-03-17 18:18:59.018 -07 000000433 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:18:59.018 -07 000000561 INF: Y Motor: Entering MoveAbsStepped (target = 118436 steps, sync = True, waitForSettling = True)
17-03-17 18:18:59.018 -07 000000561 INF: Y Motor: Moving to 74.0226 mm, started at 73.1768 mm, delta = 0.8458 mm
17-03-17 18:18:59.018 -07 000000424 INF: Z Motor: Entering MoveAbsStepped (DAC = 29374, sync = True, waitForSettling = False)
17-03-17 18:18:59.018 -07 000000424 INF: Z Motor: Moving to -0.134466 mm, started at -0.128090 mm, distance = -6.38 um
17-03-17 18:18:59.028 -07 000000424 INF: FPGA: Xmit ZDACW 29374\n [Z Motor]
17-03-17 18:18:59.028 -07 000000438 INF: FPGA: Recv ZDACW
17-03-17 18:18:59.038 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:18:59.038 -07 000000424 INF: FPGA: 'ZDACW 29374' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:18:59.038 -07 000000541 INF: FPGA: Recv YRDPOS 149866
17-03-17 18:18:59.048 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 21 ms overall
17-03-17 18:18:59.048 -07 000000561 INF: Y Motor: Encoder = 149866 = motor step 117082.8 = 73.1768 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:18:59.048 -07 000000561 INF: Y Motor: Last commanded position = 73.1926 mm (117108.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:18:59.048 -07 000000561 INF: Y Motor: Moving 1353 steps-32
17-03-17 18:18:59.048 -07 000000424 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:18:59.048 -07 000000618 INF: FPGA: Recv ZDACR 29374
17-03-17 18:18:59.058 -07 000000561 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:18:59.058 -07 000000424 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 18:18:59.058 -07 000000424 INF: Z Motor: MoveAbsStepped took 31 ms (did NOT wait for settling yet))
17-03-17 18:18:59.108 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 1090490472, 0x0, 418435064) end. Duration was 386 ms.
17-03-17 18:18:59.108 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-17 18:18:59.108 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:18:59.108 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 1055068208, 0x0, 391868352) end. Duration was 391 ms.
17-03-17 18:18:59.108 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-17 18:18:59.108 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:18:59.108 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:18:59.118 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:18:59.118 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-17 18:18:59.118 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 408 ms.
17-03-17 18:18:59.218 -07 000000618 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:18:59.218 -07 000000433 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 198 ms to get response, and 202 ms overall
17-03-17 18:18:59.428 -07 000000512 INF: FPGA: Recv YMVTILE
17-03-17 18:18:59.428 -07 000000561 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-17 18:18:59.458 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:18:59.458 -07 000000415 INF: FPGA: Recv YRDPOS 151570
17-03-17 18:18:59.468 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:18:59.468 -07 000000561 INF: Y Motor: Encoder = 151570 = motor step 118414.1 = 74.0088 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:18:59.468 -07 000000561 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 18:18:59.468 -07 000000561 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 387 ms, distance = 0.846 mm, average velocity = 2.186 mm/sec
17-03-17 18:19:00.018 -07 000000433 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 11, FrontChillerTemperature: 4.028963,
17-03-17 18:19:00.418 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:19:00.418 -07 000000438 INF: FPGA: Recv YRDPOS 151570
17-03-17 18:19:00.428 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:19:00.428 -07 000000561 INF: Y Motor: Encoder = 151570 = motor step 118414.1 = 74.0088 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:19:00.438 -07 000000561 INF: Y Motor: After move to 74.022606, error = -0.013817, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:19:00.438 -07 000000561 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:19:00.438 -07 000000561 INF: Y Motor: Moved to 74.0088 after 1417 ms (table move)
17-03-17 18:19:00.438 -07 000000429 INF: Z Motor: EndOfMoveAbsStepped: target = -0.134466 mm (DAC = 29374)
17-03-17 18:19:00.438 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:19:00.448 -07 000000424 INF: FPGA: Recv ZSGSRD 30220
17-03-17 18:19:00.448 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 18:19:00.448 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:19:00.448 -07 000000431 INF: FPGA: Recv ZSGSRD 30224
17-03-17 18:19:00.458 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:19:00.458 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:19:00.458 -07 000000512 INF: FPGA: Recv ZSGSRD 30215
17-03-17 18:19:00.468 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:19:00.468 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:19:00.468 -07 000000433 INF: FPGA: Recv ZSGSRD 30228
17-03-17 18:19:00.478 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:19:00.478 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:19:00.478 -07 000000541 INF: FPGA: Recv ZSGSRD 30221
17-03-17 18:19:00.488 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:19:00.488 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:19:00.488 -07 000000424 INF: FPGA: Recv ZSGSRD 30219
17-03-17 18:19:00.498 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:19:00.498 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:19:00.498 -07 000000627 INF: FPGA: Recv ZSGSRD 30220
17-03-17 18:19:00.508 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:19:00.508 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:19:00.508 -07 000000433 INF: FPGA: Recv ZSGSRD 30226
17-03-17 18:19:00.518 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:19:00.518 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:19:00.518 -07 000000512 INF: FPGA: Recv ZSGSRD 30221
17-03-17 18:19:00.528 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:19:00.528 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:19:00.528 -07 000000382 INF: FPGA: Recv ZSGSRD 30220
17-03-17 18:19:00.538 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:19:00.538 -07 000000429 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:19:00.538 -07 000000627 INF: FPGA: Recv ZPIEZORD 26122
17-03-17 18:19:00.548 -07 000000429 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:19:00.548 -07 000000429 INF: Z Motor: Piezo is near 35.8 V (nominally 0 to 100 V), expect near 44.8 V, since DAC is at 4.482 V. Piezo Error = -9.0 V.
17-03-17 18:19:00.548 -07 000000429 INF: Z Motor: ReadAdcAverage: Commanded Z = -134.5 um, Read 10 ADC samples: Avg = 30221 (-133.7 uncal um), Error = 0.8 uncal um, Median = 30220 (-133.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 30215 (-133.6 uncal um), Max = 30228 (-133.7 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 18:19:00.548 -07 000000429 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30221, posNoise = 7, negNoise = 6
17-03-17 18:19:00.548 -07 000000429 INF: Z Motor: After move to -0.134466, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:19:00.548 -07 000000429 INF: Z Motor: Settle wait time = 1419 ms, measure time = 102 ms (allowed 150 ms), total time = 1521 ms
17-03-17 18:19:00.548 -07 000000429 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 18:19:00.598 -07 000000429 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1690 ms
17-03-17 18:19:00.598 -07 000000429 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:19:00.598 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:19:00.598 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:19:00.598 -07 000000433 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:19:00.598 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:19:00.598 -07 000000415 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:19:00.598 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:19:00.608 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 18:19:00.608 -07 000000415 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:19:00.608 -07 000000415 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:19:00.608 -07 000000415 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:19:00.608 -07 000000415 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 18:19:00.608 -07 000000415 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 18:19:00.618 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:19:00.658 -07 000000541 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:19:00.858 -07 000000512 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:19:00.858 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:19:00.858 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:19:00.898 -07 000000486 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:19:00.898 -07 000000626 INF: FPGA: Recv CAMSNAP
17-03-17 18:19:00.898 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 278 ms to get response, and 285 ms overall
17-03-17 18:19:01.578 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:19:01.768 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-17 18:19:01.888 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 123 ms.
17-03-17 18:19:01.888 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:19:01.888 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 18:19:01.888 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 1027 ms.
17-03-17 18:19:01.898 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 10. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=93, R2=102, Total=195. Warn if over 250 bubbles per interval.
17-03-17 18:19:01.998 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:19:01.998 -07 000000486 INF: Autofocus start
17-03-17 18:19:01.998 -07 000000486 INF: MeasureProfile start
17-03-17 18:19:01.998 -07 000000512 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:19:02.008 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:19:02.008 -07 000000626 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:19:02.008 -07 000000486 INF: MeasureProfile done
17-03-17 18:19:02.008 -07 000000486 INF: X=16  Z correction [um]=0.0530179
17-03-17 18:19:02.008 -07 000000486 INF: Autofocus finished
17-03-17 18:19:02.208 -07 000000459 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:19:02.208 -07 000000626 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:19:02.208 -07 000000610 INF: ------------ Scan Snapping tile 18 at Y-position 74.0087890625, Z-position -0.134469467147293. ----------
17-03-17 18:19:02.208 -07 000000610 INF: Cycle	11	Tile	18	Exposure Settings		A	392	G	188	T	188	C	392
17-03-17 18:19:02.218 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27898, sync = True, waitForSettling = True)
17-03-17 18:19:02.218 -07 000000610 INF: Z Motor: Moving to -0.127709 mm, started at -0.134469 mm, distance = 6.76 um
17-03-17 18:19:02.218 -07 000000610 INF: FPGA: Xmit ZDACW 27898\n [Z Motor]
17-03-17 18:19:02.218 -07 000000478 INF: FPGA: Recv ZDACW
17-03-17 18:19:02.228 -07 000000610 INF: FPGA: 'ZDACW 27898' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:19:02.228 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:19:02.228 -07 000000626 INF: FPGA: Recv ZDACR 27898
17-03-17 18:19:02.238 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:19:02.238 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:19:02.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:19:02.388 -07 000000448 INF: FPGA: Recv ZSGSRD 29172
17-03-17 18:19:02.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:19:02.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:19:02.398 -07 000000512 INF: FPGA: Recv ZSGSRD 29173
17-03-17 18:19:02.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:19:02.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:19:02.408 -07 000000459 INF: FPGA: Recv ZSGSRD 29168
17-03-17 18:19:02.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:19:02.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:19:02.418 -07 000000478 INF: FPGA: Recv ZSGSRD 29171
17-03-17 18:19:02.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:19:02.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:19:02.428 -07 000000448 INF: FPGA: Recv ZSGSRD 29170
17-03-17 18:19:02.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:19:02.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:19:02.438 -07 000000486 INF: FPGA: Recv ZSGSRD 29173
17-03-17 18:19:02.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:19:02.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:19:02.448 -07 000000512 INF: FPGA: Recv ZSGSRD 29174
17-03-17 18:19:02.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:19:02.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:19:02.458 -07 000000482 INF: FPGA: Recv ZSGSRD 29170
17-03-17 18:19:02.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:19:02.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:19:02.468 -07 000000448 INF: FPGA: Recv ZSGSRD 29169
17-03-17 18:19:02.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:19:02.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:19:02.478 -07 000000478 INF: FPGA: Recv ZSGSRD 29173
17-03-17 18:19:02.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:19:02.488 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:19:02.488 -07 000000486 INF: FPGA: Recv ZPIEZORD 24676
17-03-17 18:19:02.498 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:19:02.498 -07 000000610 INF: Z Motor: Piezo is near 32.7 V (nominally 0 to 100 V), expect near 42.6 V, since DAC is at 4.257 V. Piezo Error = -9.9 V.
17-03-17 18:19:02.498 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -127.7 um, Read 10 ADC samples: Avg = 29171 (-127.0 uncal um), Error = 0.8 uncal um, Median = 29172 (-127.0 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 29168 (-126.9 uncal um), Max = 29174 (-127.0 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 18:19:02.498 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29171, posNoise = 3, negNoise = 3
17-03-17 18:19:02.498 -07 000000610 INF: Z Motor: After move to -0.127709, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:19:02.498 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 18:19:02.498 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:19:02.498 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:19:02.498 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:19:02.498 -07 000000448 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:19:02.498 -07 000000478 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:19:02.498 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:19:02.498 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:19:02.498 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:19:02.498 -07 000000486 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:19:02.498 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:19:02.498 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:19:02.498 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:19:02.498 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 18:19:02.498 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:19:02.508 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 18:19:02.508 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:19:02.518 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 13 ms.
17-03-17 18:19:02.518 -07 000000478 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 18 ms.
17-03-17 18:19:02.518 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 13 ms.
17-03-17 18:19:02.518 -07 000000486 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 19 ms.
17-03-17 18:19:02.518 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 392 392 188 188 28074 150\n [Camera]
17-03-17 18:19:02.718 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:19:03.118 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 584
17-03-17 18:19:03.118 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 584
17-03-17 18:19:03.118 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:19:03.118 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 584
17-03-17 18:19:03.118 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 584
17-03-17 18:19:03.118 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:19:03.118 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:19:03.118 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 18:19:03.118 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:19:03.118 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-17 18:19:03.308 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28074 777
17-03-17 18:19:03.458 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP turning grn on 927
17-03-17 18:19:03.518 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 397 ms.
17-03-17 18:19:03.518 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 18:19:03.518 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:19:03.518 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 399 ms.
17-03-17 18:19:03.518 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 18:19:03.518 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:19:03.518 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:19:03.518 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-17 18:19:03.518 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:19:03.528 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-17 18:19:03.648 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1115
17-03-17 18:19:03.648 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1115
17-03-17 18:19:03.648 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1115
17-03-17 18:19:03.648 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1115
17-03-17 18:19:03.648 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:19:03.648 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:19:03.648 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 2485095640, 0x0, 391868352) start.
17-03-17 18:19:03.648 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:19:03.648 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:19:03.648 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 1125912736, 0x0, 418435064) start.
17-03-17 18:19:03.838 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP 1307
17-03-17 18:19:03.838 -07 000000429 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:19:03.838 -07 000000610 INF: FPGA: 'CAMDBLSNAP 392 392 188 188 28074 150' command took 2 ms to send, 1304 ms to get response, and 1314 ms overall
17-03-17 18:19:03.838 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 18:19:03.838 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 19 at Y-position 74.0087890625, Z-Position -0.127724044398444. ------
17-03-17 18:19:03.838 -07 000000448 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:19:03.838 -07 000000569 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.8526 mm, moving Z to -0.13397 mm
17-03-17 18:19:03.838 -07 000000569 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:19:03.848 -07 000000429 INF: Y Motor: Entering MoveAbsStepped (target = 119764 steps, sync = True, waitForSettling = True)
17-03-17 18:19:03.848 -07 000000429 INF: Y Motor: Moving to 74.8526 mm, started at 74.0088 mm, delta = 0.8438 mm
17-03-17 18:19:03.848 -07 000000486 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:19:03.848 -07 000000448 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 18:19:03.848 -07 000000429 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:19:03.848 -07 000000512 INF: Z Motor: Entering MoveAbsStepped (DAC = 29266, sync = True, waitForSettling = False)
17-03-17 18:19:03.848 -07 000000512 INF: Z Motor: Moving to -0.133971 mm, started at -0.127724 mm, distance = -6.25 um
17-03-17 18:19:03.848 -07 000000486 INF: FPGA: Recv YRDPOS 151570
17-03-17 18:19:03.858 -07 000000429 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:19:03.858 -07 000000429 INF: Y Motor: Encoder = 151570 = motor step 118414.1 = 74.0088 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:19:03.858 -07 000000429 INF: Y Motor: Last commanded position = 74.0226 mm (118436.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:19:03.858 -07 000000429 INF: Y Motor: Moving 1350 steps-28
17-03-17 18:19:03.858 -07 000000512 INF: FPGA: Xmit ZDACW 29266\n [Z Motor]
17-03-17 18:19:03.858 -07 000000502 INF: FPGA: Recv ZDACW
17-03-17 18:19:03.868 -07 000000448 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:19:03.868 -07 000000512 INF: FPGA: 'ZDACW 29266' command took 3 ms to send, 0 ms to get response, and 16 ms overall
17-03-17 18:19:03.878 -07 000000429 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:19:03.888 -07 000000512 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:19:03.888 -07 000000502 INF: FPGA: Recv ZDACR 29266
17-03-17 18:19:03.898 -07 000000512 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:19:03.898 -07 000000512 INF: Z Motor: MoveAbsStepped took 47 ms (did NOT wait for settling yet))
17-03-17 18:19:04.048 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 2485095640, 0x0, 391868352) end. Duration was 399 ms.
17-03-17 18:19:04.048 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 18:19:04.048 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:19:04.048 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 1125912736, 0x0, 418435064) end. Duration was 400 ms.
17-03-17 18:19:04.048 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 18:19:04.048 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:19:04.058 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:19:04.058 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 18:19:04.058 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 408 ms.
17-03-17 18:19:04.058 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-17 18:19:04.068 -07 000000502 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:19:04.068 -07 000000448 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 220 ms overall
17-03-17 18:19:04.248 -07 000000382 INF: FPGA: Recv YMVTILE
17-03-17 18:19:04.258 -07 000000429 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 370 ms to get response, and 396 ms overall
17-03-17 18:19:04.278 -07 000000429 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:19:04.278 -07 000000502 INF: FPGA: Recv YRDPOS 153257
17-03-17 18:19:04.288 -07 000000429 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:19:04.288 -07 000000429 INF: Y Motor: Encoder = 153257 = motor step 119732.0 = 74.8325 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:19:04.288 -07 000000429 INF: Y Motor: Position error before settling (table move) = -41 encoder counts (-0.020 mm)
17-03-17 18:19:04.288 -07 000000429 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 399 ms, distance = 0.844 mm, average velocity = 2.115 mm/sec
17-03-17 18:19:05.238 -07 000000429 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:19:05.238 -07 000000482 INF: FPGA: Recv YRDPOS 153258
17-03-17 18:19:05.248 -07 000000429 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:19:05.248 -07 000000429 INF: Y Motor: Encoder = 153258 = motor step 119732.8 = 74.8330 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:19:05.258 -07 000000429 INF: Y Motor: After move to 74.852608, error = -0.019600, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:19:05.258 -07 000000429 INF: Y Motor: Position error after settling (table move) = -40 encoder counts (-0.020 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 18:19:05.258 -07 000000429 INF: Y Motor: Moved to 74.8330 after 1413 ms (table move)
17-03-17 18:19:05.258 -07 000000569 INF: Z Motor: EndOfMoveAbsStepped: target = -0.133971 mm (DAC = 29266)
17-03-17 18:19:05.258 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:19:05.268 -07 000000415 INF: FPGA: Recv ZSGSRD 30144
17-03-17 18:19:05.268 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 18:19:05.268 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:19:05.268 -07 000000626 INF: FPGA: Recv ZSGSRD 30152
17-03-17 18:19:05.278 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:19:05.278 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:19:05.278 -07 000000626 INF: FPGA: Recv ZSGSRD 30137
17-03-17 18:19:05.288 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:19:05.288 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:19:05.288 -07 000000382 INF: FPGA: Recv ZSGSRD 30139
17-03-17 18:19:05.298 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:19:05.298 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:19:05.298 -07 000000382 INF: FPGA: Recv ZSGSRD 30143
17-03-17 18:19:05.308 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:19:05.308 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:19:05.308 -07 000000382 INF: FPGA: Recv ZSGSRD 30149
17-03-17 18:19:05.318 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:19:05.318 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:19:05.318 -07 000000512 INF: FPGA: Recv ZSGSRD 30142
17-03-17 18:19:05.328 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:19:05.328 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:19:05.328 -07 000000459 INF: FPGA: Recv ZSGSRD 30155
17-03-17 18:19:05.338 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:19:05.338 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:19:05.338 -07 000000459 INF: FPGA: Recv ZSGSRD 30151
17-03-17 18:19:05.348 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:19:05.348 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:19:05.348 -07 000000512 INF: FPGA: Recv ZSGSRD 30145
17-03-17 18:19:05.358 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:19:05.358 -07 000000569 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:19:05.358 -07 000000626 INF: FPGA: Recv ZPIEZORD 25993
17-03-17 18:19:05.368 -07 000000569 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:19:05.368 -07 000000569 INF: Z Motor: Piezo is near 35.5 V (nominally 0 to 100 V), expect near 44.7 V, since DAC is at 4.466 V. Piezo Error = -9.1 V.
17-03-17 18:19:05.368 -07 000000569 INF: Z Motor: ReadAdcAverage: Commanded Z = -134.0 um, Read 10 ADC samples: Avg = 30146 (-133.2 uncal um), Error = 0.8 uncal um, Median = 30144 (-133.2 uncal um), StdDev = 6 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 30137 (-133.1 uncal um), Max = 30155 (-133.3 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 18:19:05.368 -07 000000569 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30146, posNoise = 9, negNoise = 9
17-03-17 18:19:05.368 -07 000000569 INF: Z Motor: After move to -0.133971, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:19:05.368 -07 000000569 INF: Z Motor: Settle wait time = 1415 ms, measure time = 103 ms (allowed 150 ms), total time = 1518 ms
17-03-17 18:19:05.368 -07 000000569 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 18:19:05.378 -07 000000382 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 11, FrontChillerTemperature: 4.026244,
17-03-17 18:19:05.418 -07 000000569 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1571 ms
17-03-17 18:19:05.418 -07 000000569 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:19:05.418 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:19:05.418 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:19:05.418 -07 000000415 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:19:05.418 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:19:05.418 -07 000000486 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:19:05.418 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:19:05.418 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:19:05.418 -07 000000486 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:19:05.428 -07 000000486 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 18:19:05.428 -07 000000486 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:19:05.438 -07 000000486 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-17 18:19:05.438 -07 000000486 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 19 ms.
17-03-17 18:19:05.438 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:19:05.488 -07 000000459 INF: FPGA: Recv @CAMSNAP turning led on 43
17-03-17 18:19:05.688 -07 000000502 INF: FPGA: Recv @CAMSNAP img rdy 243
17-03-17 18:19:05.688 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 243
17-03-17 18:19:05.688 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:19:05.728 -07 000000382 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:19:05.728 -07 000000512 INF: FPGA: Recv CAMSNAP
17-03-17 18:19:05.728 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 274 ms to get response, and 285 ms overall
17-03-17 18:19:06.578 -07 000000415 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:19:06.608 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2520517904, 0x0, 559484976) start.
17-03-17 18:19:06.728 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2520517904, 0x0, 559484976) end. Duration was 123 ms.
17-03-17 18:19:06.728 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:19:06.728 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 18:19:06.728 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 1037 ms.
17-03-17 18:19:06.738 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 10. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=93, R2=102, Total=195. Warn if over 250 bubbles per interval.
17-03-17 18:19:06.828 -07 000000459 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:19:06.828 -07 000000626 INF: Autofocus start
17-03-17 18:19:06.828 -07 000000626 INF: MeasureProfile start
17-03-17 18:19:06.828 -07 000000431 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:19:06.838 -07 000000459 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:19:06.838 -07 000000459 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:19:06.838 -07 000000626 INF: MeasureProfile done
17-03-17 18:19:06.838 -07 000000626 INF: X=16  Z correction [um]=0.0530179
17-03-17 18:19:06.838 -07 000000626 INF: Autofocus finished
17-03-17 18:19:07.038 -07 000000512 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:19:07.038 -07 000000459 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:19:07.038 -07 000000610 INF: ------------ Scan Snapping tile 19 at Y-position 74.8330078125, Z-position -0.133987651236661. ----------
17-03-17 18:19:07.038 -07 000000610 INF: Cycle	11	Tile	19	Exposure Settings		A	392	G	188	T	188	C	392
17-03-17 18:19:07.038 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27791, sync = True, waitForSettling = True)
17-03-17 18:19:07.038 -07 000000610 INF: Z Motor: Moving to -0.127219 mm, started at -0.133988 mm, distance = 6.77 um
17-03-17 18:19:07.038 -07 000000610 INF: FPGA: Xmit ZDACW 27791\n [Z Motor]
17-03-17 18:19:07.048 -07 000000482 INF: FPGA: Recv ZDACW
17-03-17 18:19:07.058 -07 000000610 INF: FPGA: 'ZDACW 27791' command took 1 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:19:07.058 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:19:07.058 -07 000000486 INF: FPGA: Recv ZDACR 27791
17-03-17 18:19:07.068 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:19:07.068 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:19:07.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:19:07.218 -07 000000478 INF: FPGA: Recv ZSGSRD 29093
17-03-17 18:19:07.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:19:07.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:19:07.228 -07 000000448 INF: FPGA: Recv ZSGSRD 29092
17-03-17 18:19:07.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:19:07.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:19:07.238 -07 000000482 INF: FPGA: Recv ZSGSRD 29097
17-03-17 18:19:07.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:19:07.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:19:07.248 -07 000000486 INF: FPGA: Recv ZSGSRD 29090
17-03-17 18:19:07.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:19:07.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:19:07.258 -07 000000478 INF: FPGA: Recv ZSGSRD 29098
17-03-17 18:19:07.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:19:07.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:19:07.268 -07 000000431 INF: FPGA: Recv ZSGSRD 29094
17-03-17 18:19:07.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:19:07.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:19:07.278 -07 000000512 INF: FPGA: Recv ZSGSRD 29092
17-03-17 18:19:07.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:19:07.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:19:07.288 -07 000000459 INF: FPGA: Recv ZSGSRD 29097
17-03-17 18:19:07.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:19:07.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:19:07.298 -07 000000478 INF: FPGA: Recv ZSGSRD 29088
17-03-17 18:19:07.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:19:07.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:19:07.308 -07 000000448 INF: FPGA: Recv ZSGSRD 29089
17-03-17 18:19:07.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:19:07.318 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:19:07.318 -07 000000482 INF: FPGA: Recv ZPIEZORD 24611
17-03-17 18:19:07.328 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:19:07.328 -07 000000610 INF: Z Motor: Piezo is near 32.6 V (nominally 0 to 100 V), expect near 42.4 V, since DAC is at 4.241 V. Piezo Error = -9.8 V.
17-03-17 18:19:07.328 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -127.2 um, Read 10 ADC samples: Avg = 29093 (-126.5 uncal um), Error = 0.8 uncal um, Median = 29092 (-126.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29088 (-126.4 uncal um), Max = 29098 (-126.5 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 18:19:07.328 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29093, posNoise = 5, negNoise = 5
17-03-17 18:19:07.328 -07 000000610 INF: Z Motor: After move to -0.127219, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:19:07.328 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 18:19:07.328 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:19:07.328 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:19:07.328 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:19:07.328 -07 000000431 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:19:07.328 -07 000000478 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:19:07.328 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:19:07.328 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:19:07.328 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:19:07.328 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:19:07.328 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:19:07.328 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 18:19:07.328 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:19:07.338 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 18:19:07.338 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:19:07.338 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 18:19:07.338 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:19:07.348 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 12 ms.
17-03-17 18:19:07.348 -07 000000478 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 18 ms.
17-03-17 18:19:07.348 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 12 ms.
17-03-17 18:19:07.348 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 18 ms.
17-03-17 18:19:07.348 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 392 392 188 188 27967 150\n [Camera]
17-03-17 18:19:07.548 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:19:07.938 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 584
17-03-17 18:19:07.938 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 584
17-03-17 18:19:07.938 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:19:07.938 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:19:07.938 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 18:19:07.948 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 584
17-03-17 18:19:07.948 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 584
17-03-17 18:19:07.948 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:19:07.948 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:19:07.948 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-17 18:19:08.138 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 27967 777
17-03-17 18:19:08.288 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning grn on 927
17-03-17 18:19:08.328 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 387 ms.
17-03-17 18:19:08.328 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 18:19:08.328 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:19:08.338 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:19:08.338 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 393 ms.
17-03-17 18:19:08.338 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-17 18:19:08.338 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:19:08.338 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:19:08.338 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 18:19:08.348 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-17 18:19:08.468 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1115
17-03-17 18:19:08.468 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1115
17-03-17 18:19:08.478 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:19:08.478 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:19:08.478 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-17 18:19:08.478 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1115
17-03-17 18:19:08.478 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1115
17-03-17 18:19:08.478 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:19:08.478 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:19:08.478 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 18:19:08.668 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP 1308
17-03-17 18:19:08.668 -07 000000478 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:19:08.668 -07 000000610 INF: FPGA: 'CAMDBLSNAP 392 392 188 188 27967 150' command took 2 ms to send, 1311 ms to get response, and 1315 ms overall
17-03-17 18:19:08.878 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 406 ms.
17-03-17 18:19:08.878 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-17 18:19:08.878 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:19:08.878 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 405 ms.
17-03-17 18:19:08.878 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 406 ms.
17-03-17 18:19:08.878 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:19:08.888 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:19:08.888 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 18:19:08.888 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 414 ms.
17-03-17 18:19:08.888 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) start.
17-03-17 18:19:08.898 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 417 ms.
17-03-17 18:19:08.928 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) end. Duration was 42 ms.
17-03-17 18:19:08.928 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) start.
17-03-17 18:19:08.978 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) end. Duration was 42 ms.
17-03-17 18:19:09.208 -07 000000610 INF: Enabling Skipping AutoFocus in the next 0 cycles.
17-03-17 18:19:09.208 -07 000000610 INF: Imaging Cycle 11: ScanTilesCommand Cycle 11 time end. Duration was 183339 ms.
17-03-17 18:19:09.208 -07 000000610 INF: =================== Cycle #11 ===================
17-03-17 18:19:09.208 -07 000000610 INF: ===================  ===================
17-03-17 18:19:09.208 -07 000000478 INF: FPGA: Xmit EXLED1ADCR\n [GreenLED]
17-03-17 18:19:09.208 -07 000000512 INF: FPGA: Recv EXLED1ADCR 25
17-03-17 18:19:09.218 -07 000000478 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:19:09.218 -07 000000610 INF: Y-Drift Offset assigned 0.002126916.
17-03-17 18:19:09.218 -07 000000478 INF: GreenLED: Using Green data: Photodiode ADC 25 --> 0.0 mW (old method), or 1.8 mW (new method). Difference = 1.8 mW
17-03-17 18:19:10.088 -07 000000478 INF: Predictive Diagnostic Log Cycle Entry Metrics: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 11, FrontChillerTemperature: 4.026244, FrontChillerHeatSinkTemperature: 0.140565, AmbientTemperature: 18.70333, FlowCellCompartmentTemperature: 21.99544, FlowCellTargetTemperature: 22, FlowCellHeatSinkTemperature: 18.31708, GreenLEDSensorTemperature: 25.7215, PhotodiodePowerAdcGreen: 25, PhotodiodePowerMwGreen: 1.835864