17-03-18 04:00:33.824 -07 000000610 INF: =================== Cycle #120 ===================
17-03-18 04:00:33.824 -07 000000610 INF: Y Motor: Entering MoveAbsStepped (target = 120609 steps, sync = True, waitForSettling = True)
17-03-18 04:00:33.824 -07 000000610 INF: Y Motor: Moving to 75.3806 mm, started at 74.8320 mm, delta = 0.5485 mm
17-03-18 04:00:33.824 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:00:33.824 -07 000000625 INF: FPGA: Recv YRDPOS 153257
17-03-18 04:00:33.834 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:00:33.834 -07 000000610 INF: Y Motor: Encoder = 153257 = motor step 119732.0 = 74.8325 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:00:33.834 -07 000000610 INF: Y Motor: Last commanded position = 74.8526 mm (119764.2 steps), delta from last commanded position = 0.5280 mm (844.8 steps). UsingTableMove = False
17-03-18 04:00:33.834 -07 000000610 INF: Y Motor: Moving to 154379 encoder counts
17-03-18 04:00:33.834 -07 000000610 INF: FPGA: Xmit YMVTO 154379\n [Y Motor]
17-03-18 04:00:33.884 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 120, FrontChillerTemperature: 3.988112,
17-03-18 04:00:33.954 -07 000000561 INF: FPGA: Recv YMVTO 154379 878
17-03-18 04:00:33.954 -07 000000610 INF: FPGA: 'YMVTO 154379' command took 0 ms to send, 112 ms to get response, and 118 ms overall
17-03-18 04:00:33.954 -07 000000610 INF: Y Motor: Position error before settling = 0 encoder counts (0.000 mm)
17-03-18 04:00:33.954 -07 000000610 INF: Y Motor: To move from 74.833 to 75.381 (0.549 mm) should take 877 steps, but required 878 steps (0.549 mm). Slippage = 0.001 mm (0.00%).
17-03-18 04:00:33.954 -07 000000610 INF: Y Motor: FPGA move command 'YMVTO 154379' took 118 ms, distance = 0.549 mm, average velocity = 4.649 mm/sec
17-03-18 04:00:36.624 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:00:36.624 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 119. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1701, R2=1769, Total=3470. Warn if over 250 bubbles per interval.
17-03-18 04:00:36.954 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:00:36.954 -07 000000437 INF: FPGA: Recv YRDPOS 154387
17-03-18 04:00:36.964 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:00:36.964 -07 000000610 INF: Y Motor: Encoder = 154387 = motor step 120614.8 = 75.3843 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:00:36.984 -07 000000610 INF: Y Motor: After move to 75.380580, error = 0.003697, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:00:36.984 -07 000000610 INF: Y Motor: Position error after settling = 8 encoder counts (0.004 mm), Delta during settling = 8 counts (0.004 mm)
17-03-18 04:00:36.984 -07 000000610 INF: Y Motor: Moved to 75.3843 after 3162 ms
17-03-18 04:00:36.994 -07 000000610 INF: =================== Cycle #120, Flow Cell Temp 60° ===================
17-03-18 04:00:36.994 -07 000000610 INF: =================== Cycle #120, Flow Cell Temp 60°, FC temperature to 60° ===================
17-03-18 04:00:36.994 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 60000000\n [FlowCellTempControl]
17-03-18 04:00:36.994 -07 000000625 INF: FPGA: Recv TEC2TEMP 
17-03-18 04:00:37.004 -07 000000610 INF: FPGA: 'TEC2TEMP 0 60000000' command took 1 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 04:00:37.004 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-18 04:00:37.004 -07 000000618 INF: FPGA: Recv TEC2EN 
17-03-18 04:00:37.014 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:00:37.014 -07 000000610 INF: =================== Cycle #120, Flow Cell Temp 60° ===================
17-03-18 04:00:37.014 -07 000000610 INF: =================== Cycle #120 ===================
17-03-18 04:00:37.014 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-18 04:00:37.014 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 04:00:37.044 -07 000000610 INF: ReagentValve: Recv 18\r
17-03-18 04:00:37.044 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 24 to 3. Moving 3 positions.
17-03-18 04:00:37.044 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-18 04:00:37.344 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 04:00:37.364 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-18 04:00:37.364 -07 000000610 INF: ReagentValve: Move+ from 24 to 3 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-18 04:00:37.414 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 04:00:37.434 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 04:00:37.434 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 04:00:37.534 -07 000000610 INF: =================== Cycle #120, Pumping Reagent PR2 (3) ===================
17-03-18 04:00:37.534 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1
17-03-18 04:00:37.534 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:00:37.564 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-18 04:00:37.564 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-18 04:00:37.564 -07 000000610 INF: =================== Cycle #120, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 04:00:37.694 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r
17-03-18 04:00:37.734 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:00:39.244 -07 000000590 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 120, FrontChillerTemperature: 3.986717,
17-03-18 04:00:40.864 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:00:40.894 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:00:41.314 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:00:41.344 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:00:41.624 -07 000000012 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 2 R1 2
17-03-18 04:00:41.624 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 119. Bubbles during last 5000 ms interval: R1=2, R2=2, Total=4. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1703, R2=1771, Total=3474. Warn if over 250 bubbles per interval.
17-03-18 04:00:41.764 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:00:41.794 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:00:41.794 -07 000000610 INF: LanePump: Waited 4059 ms for pump motion to complete
17-03-18 04:00:41.794 -07 000000610 INF: =================== Cycle #120, Pumping Reagent PR2 (3) ===================
17-03-18 04:00:41.924 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:00:41.954 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 04:00:41.964 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 04:00:42.084 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:00:42.114 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 04:00:42.114 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 04:00:42.114 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 04:00:42.244 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 04:00:42.274 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:00:42.704 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:00:42.734 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:00:42.734 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-18 04:00:42.734 -07 000000610 INF: =================== Cycle #120 ===================
17-03-18 04:00:43.964 -07 000000610 INF: AsyncDelayTimer waited 1229ms
17-03-18 04:00:43.964 -07 000000610 INF: ReagentValve: Go to position 4 - PumpToFlowcell start
17-03-18 04:00:43.964 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 04:00:43.984 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 04:00:43.984 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 3 to 4. Moving 1 positions.
17-03-18 04:00:43.984 -07 000000610 INF: ReagentValve: Xmit +04\r
17-03-18 04:00:44.114 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 04:00:44.134 -07 000000610 INF: ReagentValve: Recv 00CD\r
17-03-18 04:00:44.134 -07 000000610 INF: ReagentValve: Move+ from 3 to 4 took 205 steps, expected 204. Error = 1 steps (0.5%)
17-03-18 04:00:44.184 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 04:00:44.204 -07 000000610 INF: ReagentValve: Recv 04\r
17-03-18 04:00:44.204 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 04:00:44.304 -07 000000610 INF: =================== Cycle #120, Pumping Reagent CMS (4) ===================
17-03-18 04:00:44.304 -07 000000610 INF: LanePump: Pumping from 4, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-18 04:00:44.304 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:00:44.334 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 04:00:44.334 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 04:00:44.334 -07 000000610 INF: =================== Cycle #120, Pumping Reagent CMS (4), Aspirating port InputPort ===================
17-03-18 04:00:44.464 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-18 04:00:44.504 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:00:44.604 -07 000000561 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 120, FrontChillerTemperature: 3.993549,
17-03-18 04:00:45.944 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:00:45.974 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:00:46.394 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:00:46.424 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:00:46.424 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-18 04:00:46.424 -07 000000610 INF: =================== Cycle #120, Pumping Reagent CMS (4) ===================
17-03-18 04:00:46.554 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:00:46.584 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 04:00:46.584 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 04:00:46.624 -07 000000590 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:00:46.624 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 119. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1703, R2=1771, Total=3474. Warn if over 250 bubbles per interval.
17-03-18 04:00:46.714 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:00:46.744 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 04:00:46.744 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 04:00:46.744 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 04:00:46.874 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 04:00:46.904 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:00:47.334 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:00:47.364 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:00:47.364 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 04:00:47.364 -07 000000610 INF: =================== Cycle #120 ===================
17-03-18 04:00:48.584 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-18 04:00:48.584 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-18 04:00:48.584 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 04:00:48.604 -07 000000610 INF: ReagentValve: Recv 04\r
17-03-18 04:00:48.604 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 4 to 3. Moving 1 positions.
17-03-18 04:00:48.604 -07 000000610 INF: ReagentValve: Xmit -03\r
17-03-18 04:00:48.754 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 04:00:48.774 -07 000000610 INF: ReagentValve: Recv 00E1\r
17-03-18 04:00:48.774 -07 000000610 INF: ReagentValve: Move- from 4 to 3 took 225 steps, expected 204. Error = 21 steps (10.3%)
17-03-18 04:00:48.824 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 04:00:48.844 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 04:00:48.844 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 04:00:48.944 -07 000000610 INF: =================== Cycle #120, Pumping Reagent PR2 (3) ===================
17-03-18 04:00:48.944 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-18 04:00:48.944 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:00:48.974 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 04:00:48.974 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 04:00:48.974 -07 000000610 INF: =================== Cycle #120, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 04:00:49.104 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-18 04:00:49.144 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:00:49.964 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 120, FrontChillerTemperature: 4.005817,
17-03-18 04:00:50.014 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:00:50.044 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:00:50.044 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-18 04:00:50.044 -07 000000610 INF: =================== Cycle #120, Pumping Reagent PR2 (3) ===================
17-03-18 04:00:50.174 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:00:50.204 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 04:00:50.204 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-18 04:00:50.334 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:00:50.364 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 04:00:50.364 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-18 04:00:50.364 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 04:00:50.494 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 04:00:50.524 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:00:50.954 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:00:50.984 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:00:50.984 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 04:00:50.984 -07 000000610 INF: =================== Cycle #120 ===================
17-03-18 04:00:50.984 -07 000000480 INF: WaitCommand(10000) start
17-03-18 04:00:50.984 -07 000000437 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 04:00:50.984 -07 000000437 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-18 04:00:51.624 -07 000000579 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:00:51.624 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 119. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1703, R2=1771, Total=3474. Warn if over 250 bubbles per interval.
17-03-18 04:00:52.204 -07 000000437 INF: AsyncDelayTimer waited 1216ms
17-03-18 04:00:52.204 -07 000000437 INF: LanePump: Xmit /1?\r
17-03-18 04:00:52.234 -07 000000437 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 04:00:52.234 -07 000000437 INF: LanePump: Current Position of Pump is: 1110
17-03-18 04:00:52.364 -07 000000437 INF: LanePump: Xmit /1V1500OA0R\r
17-03-18 04:00:52.404 -07 000000437 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:00:53.934 -07 000000437 INF: LanePump: Xmit /1Q\r
17-03-18 04:00:53.964 -07 000000437 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:00:54.384 -07 000000437 INF: LanePump: Xmit /1Q\r
17-03-18 04:00:54.414 -07 000000437 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:00:54.414 -07 000000437 INF: LanePump: Waited 2009 ms for pump motion to complete
17-03-18 04:00:54.414 -07 000000437 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 04:00:54.414 -07 000000437 INF: ===================  ===================
17-03-18 04:00:55.324 -07 000000012 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 120, FrontChillerTemperature: 4.003063,
17-03-18 04:00:56.624 -07 000000579 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:00:56.624 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 119. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1703, R2=1771, Total=3474. Warn if over 250 bubbles per interval.
17-03-18 04:01:00.684 -07 000000561 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 120, FrontChillerTemperature: 3.994908,
17-03-18 04:01:00.994 -07 000000480 INF: WaitCommand(10000) end
17-03-18 04:01:00.994 -07 000000610 INF: =================== Cycle #120, Pumping Reagent PR2 (3) ===================
17-03-18 04:01:00.994 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 250 µL, calling command Pumping to Flow Cell #1
17-03-18 04:01:00.994 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:01:01.034 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-18 04:01:01.034 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-18 04:01:01.034 -07 000000610 INF: =================== Cycle #120, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 04:01:01.164 -07 000000610 INF: LanePump: Xmit /1V400IP1500R\r
17-03-18 04:01:01.204 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:01:01.634 -07 000000579 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:01:01.634 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 119. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1703, R2=1771, Total=3474. Warn if over 250 bubbles per interval.
17-03-18 04:01:06.044 -07 000000437 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 120, FrontChillerTemperature: 4.005817,
17-03-18 04:01:06.634 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:01:06.634 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 119. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1703, R2=1771, Total=3474. Warn if over 250 bubbles per interval.
17-03-18 04:01:07.334 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:01:07.364 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:01:07.784 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:01:07.814 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:01:08.234 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:01:08.264 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:01:08.684 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:01:08.714 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:01:09.134 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:01:09.164 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:01:09.164 -07 000000610 INF: LanePump: Waited 7959 ms for pump motion to complete
17-03-18 04:01:09.164 -07 000000610 INF: =================== Cycle #120, Pumping Reagent PR2 (3) ===================
17-03-18 04:01:09.294 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:01:09.324 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-18 04:01:09.324 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-18 04:01:09.454 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:01:09.484 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-18 04:01:09.484 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-18 04:01:09.484 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 04:01:09.614 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 04:01:09.644 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:01:10.074 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:01:10.104 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:01:10.104 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-18 04:01:10.104 -07 000000610 INF: =================== Cycle #120 ===================
17-03-18 04:01:11.324 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-18 04:01:11.324 -07 000000610 INF: ReagentValve: Go to position 1 - PumpToFlowcell start
17-03-18 04:01:11.324 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 04:01:11.344 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 04:01:11.344 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 1. Moving 2 positions.
17-03-18 04:01:11.344 -07 000000610 INF: ReagentValve: Xmit -01\r
17-03-18 04:01:11.404 -07 000000579 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 120, FrontChillerTemperature: 3.999021,
17-03-18 04:01:11.554 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 04:01:11.574 -07 000000610 INF: ReagentValve: Recv 0198\r
17-03-18 04:01:11.574 -07 000000610 INF: ReagentValve: Move- from 3 to 1 took 408 steps, expected 408. Error = 0 steps (0.0%)
17-03-18 04:01:11.624 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 04:01:11.634 -07 000000618 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 2 R1 2
17-03-18 04:01:11.634 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 119. Bubbles during last 5000 ms interval: R1=2, R2=2, Total=4. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1705, R2=1773, Total=3478. Warn if over 250 bubbles per interval.
17-03-18 04:01:11.644 -07 000000610 INF: ReagentValve: Recv 01\r
17-03-18 04:01:11.644 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 04:01:11.744 -07 000000610 INF: =================== Cycle #120, Pumping Reagent IMT (1) ===================
17-03-18 04:01:11.744 -07 000000610 INF: LanePump: Pumping from 1, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-18 04:01:11.744 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:01:11.774 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-18 04:01:11.774 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-18 04:01:11.774 -07 000000610 INF: =================== Cycle #120, Pumping Reagent IMT (1), Aspirating port InputPort ===================
17-03-18 04:01:11.904 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-18 04:01:11.944 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:01:13.384 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:01:13.414 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:01:13.834 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:01:13.864 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:01:13.864 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-18 04:01:13.864 -07 000000610 INF: =================== Cycle #120, Pumping Reagent IMT (1) ===================
17-03-18 04:01:13.994 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:01:14.024 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-18 04:01:14.024 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-18 04:01:14.154 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:01:14.184 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-18 04:01:14.184 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-18 04:01:14.184 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 04:01:14.314 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 04:01:14.344 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:01:14.774 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:01:14.804 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:01:14.804 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 04:01:14.804 -07 000000610 INF: =================== Cycle #120 ===================
17-03-18 04:01:16.024 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-18 04:01:16.024 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-18 04:01:16.024 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 04:01:16.044 -07 000000610 INF: ReagentValve: Recv 01\r
17-03-18 04:01:16.044 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 1 to 3. Moving 2 positions.
17-03-18 04:01:16.044 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-18 04:01:16.274 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 04:01:16.294 -07 000000610 INF: ReagentValve: Recv 01AC\r
17-03-18 04:01:16.294 -07 000000610 INF: ReagentValve: Move+ from 1 to 3 took 428 steps, expected 408. Error = 20 steps (4.9%)
17-03-18 04:01:16.344 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 04:01:16.364 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 04:01:16.364 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 04:01:16.464 -07 000000610 INF: =================== Cycle #120, Pumping Reagent PR2 (3) ===================
17-03-18 04:01:16.464 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-18 04:01:16.464 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:01:16.494 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-18 04:01:16.494 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-18 04:01:16.494 -07 000000610 INF: =================== Cycle #120, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 04:01:16.624 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-18 04:01:16.634 -07 000000625 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:01:16.634 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 119. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1705, R2=1773, Total=3478. Warn if over 250 bubbles per interval.
17-03-18 04:01:16.664 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:01:16.764 -07 000000561 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 120, FrontChillerTemperature: 4.008536,
17-03-18 04:01:17.534 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:01:17.564 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:01:17.564 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-18 04:01:17.564 -07 000000610 INF: =================== Cycle #120, Pumping Reagent PR2 (3) ===================
17-03-18 04:01:17.694 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:01:17.724 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-18 04:01:17.724 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-18 04:01:17.854 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:01:17.884 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-18 04:01:17.884 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-18 04:01:17.884 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 04:01:18.014 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 04:01:18.044 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:01:18.474 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:01:18.504 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:01:18.504 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-18 04:01:18.504 -07 000000610 INF: =================== Cycle #120 ===================
17-03-18 04:01:18.504 -07 000000610 INF: =================== Cycle #120, Flow Cell Temp 65° ===================
17-03-18 04:01:18.504 -07 000000610 INF: =================== Cycle #120, Flow Cell Temp 65°, FC temperature to 65° ===================
17-03-18 04:01:18.504 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 65000000\n [FlowCellTempControl]
17-03-18 04:01:18.504 -07 000000625 INF: FPGA: Recv TEC2TEMP 
17-03-18 04:01:18.514 -07 000000610 INF: FPGA: 'TEC2TEMP 0 65000000' command took 2 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:01:18.514 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-18 04:01:18.514 -07 000000561 INF: FPGA: Recv TEC2EN 
17-03-18 04:01:18.524 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:01:18.524 -07 000000610 INF: =================== Cycle #120, Flow Cell Temp 65° ===================
17-03-18 04:01:18.524 -07 000000610 INF: =================== Cycle #120 ===================
17-03-18 04:01:18.524 -07 000000610 INF: WaitCommand(30000) start
17-03-18 04:01:21.624 -07 000000012 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:01:21.634 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 119. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1705, R2=1773, Total=3478. Warn if over 250 bubbles per interval.
17-03-18 04:01:22.124 -07 000000579 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 120, FrontChillerTemperature: 4.000345,
17-03-18 04:01:26.624 -07 000000480 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:01:26.634 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 119. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1705, R2=1773, Total=3478. Warn if over 250 bubbles per interval.
17-03-18 04:01:27.484 -07 000000618 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 120, FrontChillerTemperature: 4.012614,
17-03-18 04:01:31.634 -07 000000437 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:01:31.634 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 119. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1705, R2=1773, Total=3478. Warn if over 250 bubbles per interval.
17-03-18 04:01:32.844 -07 000000590 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 120, FrontChillerTemperature: 4.011254,
17-03-18 04:01:36.634 -07 000000437 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:01:36.634 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 119. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1705, R2=1773, Total=3478. Warn if over 250 bubbles per interval.
17-03-18 04:01:38.204 -07 000000480 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 120, FrontChillerTemperature: 4.001704,
17-03-18 04:01:41.634 -07 000000579 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:01:41.634 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 119. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1705, R2=1773, Total=3478. Warn if over 250 bubbles per interval.
17-03-18 04:01:43.564 -07 000000590 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 120, FrontChillerTemperature: 3.999021,
17-03-18 04:01:46.634 -07 000000455 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:01:46.634 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 119. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1705, R2=1773, Total=3478. Warn if over 250 bubbles per interval.
17-03-18 04:01:48.534 -07 000000610 INF: WaitCommand(30000) end
17-03-18 04:01:48.534 -07 000000610 INF: =================== Cycle #120, Pumping Reagent PR2 (3) ===================
17-03-18 04:01:48.534 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 5 µL, calling command Pumping to Flow Cell #1
17-03-18 04:01:48.634 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:01:48.664 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-18 04:01:48.664 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-18 04:01:48.664 -07 000000610 INF: =================== Cycle #120, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 04:01:48.794 -07 000000610 INF: LanePump: Xmit /1V400IP30R\r
17-03-18 04:01:48.834 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:01:48.924 -07 000000618 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 120, FrontChillerTemperature: 3.986717,
17-03-18 04:01:49.374 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:01:49.404 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:01:49.404 -07 000000610 INF: LanePump: Waited 570 ms for pump motion to complete
17-03-18 04:01:49.404 -07 000000610 INF: =================== Cycle #120, Pumping Reagent PR2 (3) ===================
17-03-18 04:01:49.534 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:01:49.564 -07 000000610 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-18 04:01:49.564 -07 000000610 INF: LanePump: Current Position of Pump is: 1920
17-03-18 04:01:49.694 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:01:49.724 -07 000000610 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-18 04:01:49.724 -07 000000610 INF: LanePump: Current Position of Pump is: 1920
17-03-18 04:01:49.724 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 04:01:49.854 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 04:01:49.884 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:01:50.314 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:01:50.344 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:01:50.344 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 04:01:50.344 -07 000000610 INF: =================== Cycle #120 ===================
17-03-18 04:01:50.344 -07 000000561 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 04:01:50.344 -07 000000579 INF: WaitCommand(30000) start
17-03-18 04:01:50.344 -07 000000561 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-18 04:01:51.564 -07 000000561 INF: AsyncDelayTimer waited 1216ms
17-03-18 04:01:51.564 -07 000000561 INF: LanePump: Xmit /1?\r
17-03-18 04:01:51.604 -07 000000561 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-18 04:01:51.604 -07 000000561 INF: LanePump: Current Position of Pump is: 1920
17-03-18 04:01:51.634 -07 000000012 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:01:51.634 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 119. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1705, R2=1773, Total=3478. Warn if over 250 bubbles per interval.
17-03-18 04:01:51.734 -07 000000561 INF: LanePump: Xmit /1V1500OA0R\r
17-03-18 04:01:51.774 -07 000000561 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:01:54.114 -07 000000561 INF: LanePump: Xmit /1Q\r
17-03-18 04:01:54.144 -07 000000561 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:01:54.284 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 120, FrontChillerTemperature: 3.971733,
17-03-18 04:01:54.564 -07 000000561 INF: LanePump: Xmit /1Q\r
17-03-18 04:01:54.594 -07 000000561 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:01:54.594 -07 000000561 INF: LanePump: Waited 2819 ms for pump motion to complete
17-03-18 04:01:54.594 -07 000000561 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 04:01:54.594 -07 000000561 INF: ===================  ===================
17-03-18 04:01:56.634 -07 000000590 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:01:56.634 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 119. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1705, R2=1773, Total=3478. Warn if over 250 bubbles per interval.
17-03-18 04:01:59.644 -07 000000455 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 120, FrontChillerTemperature: 3.975845,
17-03-18 04:02:01.634 -07 000000625 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:02:01.634 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 119. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1705, R2=1773, Total=3478. Warn if over 250 bubbles per interval.
17-03-18 04:02:05.004 -07 000000590 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 120, FrontChillerTemperature: 3.990831,
17-03-18 04:02:06.634 -07 000000561 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:02:06.634 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 119. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1705, R2=1773, Total=3478. Warn if over 250 bubbles per interval.
17-03-18 04:02:10.364 -07 000000480 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 120, FrontChillerTemperature: 4.026244,
17-03-18 04:02:11.634 -07 000000012 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:02:11.634 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 119. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1705, R2=1773, Total=3478. Warn if over 250 bubbles per interval.
17-03-18 04:02:15.724 -07 000000590 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 120, FrontChillerTemperature: 4.03576,
17-03-18 04:02:16.634 -07 000000618 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:02:16.634 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 119. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1705, R2=1773, Total=3478. Warn if over 250 bubbles per interval.
17-03-18 04:02:20.354 -07 000000579 INF: WaitCommand(30000) end
17-03-18 04:02:20.354 -07 000000610 INF: =================== Cycle #120, Flow Cell Temp 22° ===================
17-03-18 04:02:20.354 -07 000000610 INF: =================== Cycle #120, Flow Cell Temp 22°, FC temperature to 22° ===================
17-03-18 04:02:20.354 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 22000000\n [FlowCellTempControl]
17-03-18 04:02:20.354 -07 000000012 INF: FPGA: Recv TEC2TEMP 
17-03-18 04:02:20.364 -07 000000610 INF: FPGA: 'TEC2TEMP 0 22000000' command took 1 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 04:02:20.364 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-18 04:02:20.364 -07 000000512 INF: FPGA: Recv TEC2EN 
17-03-18 04:02:20.374 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:02:20.374 -07 000000610 INF: =================== Cycle #120, Flow Cell Temp 22° ===================
17-03-18 04:02:20.374 -07 000000610 INF: =================== Cycle #120 ===================
17-03-18 04:02:20.374 -07 000000610 INF: =================== Cycle #120, Pumping Reagent PR2 (3) ===================
17-03-18 04:02:20.374 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1
17-03-18 04:02:20.374 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:02:20.404 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-18 04:02:20.404 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-18 04:02:20.404 -07 000000610 INF: =================== Cycle #120, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 04:02:20.534 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r
17-03-18 04:02:20.574 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:02:21.084 -07 000000480 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 120, FrontChillerTemperature: 3.996267,
17-03-18 04:02:21.634 -07 000000012 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:02:21.634 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 119. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1705, R2=1773, Total=3478. Warn if over 250 bubbles per interval.
17-03-18 04:02:23.704 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:02:23.734 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:02:24.154 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:02:24.184 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:02:24.604 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:02:24.634 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:02:24.634 -07 000000610 INF: LanePump: Waited 4059 ms for pump motion to complete
17-03-18 04:02:24.634 -07 000000610 INF: =================== Cycle #120, Pumping Reagent PR2 (3) ===================
17-03-18 04:02:24.764 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:02:24.794 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 04:02:24.794 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 04:02:24.924 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:02:24.954 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 04:02:24.954 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 04:02:24.954 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 04:02:25.084 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 04:02:25.114 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:02:25.544 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:02:25.574 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:02:25.574 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 04:02:25.574 -07 000000610 INF: =================== Cycle #120 ===================
17-03-18 04:02:26.444 -07 000000590 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 120, FrontChillerTemperature: 3.989471,
17-03-18 04:02:26.634 -07 000000590 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 3 R1 4
17-03-18 04:02:26.634 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 119. Bubbles during last 5000 ms interval: R1=4, R2=3, Total=7. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1709, R2=1776, Total=3485. Warn if over 250 bubbles per interval.
17-03-18 04:02:26.794 -07 000000610 INF: AsyncDelayTimer waited 1217ms
17-03-18 04:02:26.794 -07 000000610 INF: ReagentValve: Go to position 2 - PumpToFlowcell start
17-03-18 04:02:26.794 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 04:02:26.814 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 04:02:26.814 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 2. Moving 1 positions.
17-03-18 04:02:26.814 -07 000000610 INF: ReagentValve: Xmit -02\r
17-03-18 04:02:26.964 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 04:02:26.984 -07 000000610 INF: ReagentValve: Recv 00E3\r
17-03-18 04:02:26.984 -07 000000610 INF: ReagentValve: Move- from 3 to 2 took 227 steps, expected 204. Error = 23 steps (11.3%)
17-03-18 04:02:27.034 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 04:02:27.054 -07 000000610 INF: ReagentValve: Recv 02\r
17-03-18 04:02:27.054 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 04:02:27.154 -07 000000610 INF: =================== Cycle #120, Pumping Reagent USM (2) ===================
17-03-18 04:02:27.154 -07 000000610 INF: LanePump: Pumping from 2, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-18 04:02:27.154 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:02:27.184 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 04:02:27.184 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 04:02:27.184 -07 000000610 INF: =================== Cycle #120, Pumping Reagent USM (2), Aspirating port InputPort ===================
17-03-18 04:02:27.314 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-18 04:02:27.354 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:02:28.794 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:02:28.824 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:02:29.244 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:02:29.274 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:02:29.274 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-18 04:02:29.274 -07 000000610 INF: =================== Cycle #120, Pumping Reagent USM (2) ===================
17-03-18 04:02:29.404 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:02:29.434 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 04:02:29.434 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 04:02:29.564 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:02:29.594 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 04:02:29.594 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 04:02:29.594 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 04:02:29.724 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 04:02:29.754 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:02:30.184 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:02:30.214 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:02:30.214 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 04:02:30.214 -07 000000610 INF: =================== Cycle #120 ===================
17-03-18 04:02:31.434 -07 000000610 INF: AsyncDelayTimer waited 1217ms
17-03-18 04:02:31.434 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-18 04:02:31.434 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 04:02:31.454 -07 000000610 INF: ReagentValve: Recv 02\r
17-03-18 04:02:31.454 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 2 to 3. Moving 1 positions.
17-03-18 04:02:31.454 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-18 04:02:31.604 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 04:02:31.624 -07 000000610 INF: ReagentValve: Recv 00E3\r
17-03-18 04:02:31.624 -07 000000610 INF: ReagentValve: Move+ from 2 to 3 took 227 steps, expected 204. Error = 23 steps (11.3%)
17-03-18 04:02:31.634 -07 000000437 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:02:31.634 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 119. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1709, R2=1776, Total=3485. Warn if over 250 bubbles per interval.
17-03-18 04:02:31.674 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 04:02:31.694 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 04:02:31.694 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 04:02:31.794 -07 000000610 INF: =================== Cycle #120, Pumping Reagent PR2 (3) ===================
17-03-18 04:02:31.794 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-18 04:02:31.794 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:02:31.804 -07 000000579 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 120, FrontChillerTemperature: 4.019446,
17-03-18 04:02:31.824 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 04:02:31.824 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 04:02:31.824 -07 000000610 INF: =================== Cycle #120, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 04:02:31.954 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-18 04:02:31.994 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:02:32.864 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:02:32.894 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:02:32.894 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-18 04:02:32.894 -07 000000610 INF: =================== Cycle #120, Pumping Reagent PR2 (3) ===================
17-03-18 04:02:33.024 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:02:33.054 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 04:02:33.054 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-18 04:02:33.184 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:02:33.214 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 04:02:33.214 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-18 04:02:33.214 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 04:02:33.344 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 04:02:33.374 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:02:33.804 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:02:33.834 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:02:33.834 -07 000000610 INF: LanePump: Waited 458 ms for pump motion to complete
17-03-18 04:02:33.834 -07 000000610 INF: =================== Cycle #120 ===================
17-03-18 04:02:33.834 -07 000000512 INF: WaitCommand(10000) start
17-03-18 04:02:33.834 -07 000000579 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 04:02:33.834 -07 000000579 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-18 04:02:35.054 -07 000000579 INF: AsyncDelayTimer waited 1216ms
17-03-18 04:02:35.054 -07 000000579 INF: LanePump: Xmit /1?\r
17-03-18 04:02:35.084 -07 000000579 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 04:02:35.084 -07 000000579 INF: LanePump: Current Position of Pump is: 1110
17-03-18 04:02:35.214 -07 000000579 INF: LanePump: Xmit /1V1500OA0R\r
17-03-18 04:02:35.254 -07 000000579 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:02:36.634 -07 000000611 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 1
17-03-18 04:02:36.634 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 119. Bubbles during last 5000 ms interval: R1=1, R2=0, Total=1. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1710, R2=1776, Total=3486. Warn if over 250 bubbles per interval.
17-03-18 04:02:36.784 -07 000000579 INF: LanePump: Xmit /1Q\r
17-03-18 04:02:36.814 -07 000000579 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:02:37.164 -07 000000625 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 120, FrontChillerTemperature: 4.020806,
17-03-18 04:02:37.234 -07 000000579 INF: LanePump: Xmit /1Q\r
17-03-18 04:02:37.264 -07 000000579 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:02:37.264 -07 000000579 INF: LanePump: Waited 2009 ms for pump motion to complete
17-03-18 04:02:37.264 -07 000000579 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 04:02:37.264 -07 000000579 INF: ===================  ===================
17-03-18 04:02:41.634 -07 000000618 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:02:41.634 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 119. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1710, R2=1776, Total=3486. Warn if over 250 bubbles per interval.
17-03-18 04:02:42.524 -07 000000625 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 120, FrontChillerTemperature: 4.014009,
17-03-18 04:02:43.844 -07 000000512 INF: WaitCommand(10000) end
17-03-18 04:02:43.844 -07 000000610 INF: =================== Cycle #120, Imaging ===================
17-03-18 04:02:43.844 -07 000000610 INF: Imaging Cycle 120: ScanTilesCommand Cycle 120 time start.
17-03-18 04:02:43.844 -07 000000610 INF: ReagentValve: Go to position 24 (Plug) - Start of ScanTilesCommand
17-03-18 04:02:43.844 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 04:02:43.874 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 04:02:43.874 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 24. Moving 3 positions.
17-03-18 04:02:43.874 -07 000000610 INF: ReagentValve: Xmit -18\r
17-03-18 04:02:44.174 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 04:02:44.194 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-18 04:02:44.194 -07 000000610 INF: ReagentValve: Move- from 3 to 24 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-18 04:02:44.244 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 04:02:44.264 -07 000000610 INF: ReagentValve: Recv 18\r
17-03-18 04:02:44.264 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:02:44.264 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:02:44.264 -07 000000625 INF: RedLED: Snapping RedLED at power = 1930.000 mW, snap mode for ~0 ms start.
17-03-18 04:02:44.264 -07 000000625 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:02:44.264 -07 000000625 INF: FPGA: Xmit EXLED1ON\n [RedLED]
17-03-18 04:02:44.274 -07 000000611 INF: FPGA: Recv EXLED1ON 
17-03-18 04:02:44.274 -07 000000625 INF: FPGA: 'EXLED1ON' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 04:02:44.274 -07 000000625 INF: FPGA: Xmit EXLED1ADCR\n [RedLED]
17-03-18 04:02:44.274 -07 000000455 INF: FPGA: Recv EXLED1ADCR 23163
17-03-18 04:02:44.284 -07 000000625 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:02:44.284 -07 000000625 INF: RedLED: Using Red data: Photodiode ADC 23163 --> 7.4 mW (old method), or 205.3 mW (new method). Difference = 197.9 mW
17-03-18 04:02:44.284 -07 000000625 INF: FPGA: Xmit EXLED1OFF\n [RedLED]
17-03-18 04:02:44.284 -07 000000512 INF: FPGA: Recv EXLED1OFF 
17-03-18 04:02:44.294 -07 000000625 INF: FPGA: 'EXLED1OFF' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:02:44.294 -07 000000625 INF: RedLED: LED was on for 19 ms
17-03-18 04:02:44.294 -07 000000625 INF: RedLED: Snapping RedLED at power = 1930.000 mW, snap mode for ~0 ms end. Duration was 23 ms.
17-03-18 04:02:44.294 -07 000000625 INF: GreenLED: Snapping GreenLED at power = 5964.000 mW, snap mode for ~0 ms start.
17-03-18 04:02:44.294 -07 000000625 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:02:44.294 -07 000000625 INF: FPGA: Xmit EXLED2ON\n [GreenLED]
17-03-18 04:02:44.294 -07 000000512 INF: FPGA: Recv EXLED2ON 
17-03-18 04:02:44.304 -07 000000625 INF: FPGA: 'EXLED2ON' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 04:02:44.304 -07 000000625 INF: FPGA: Xmit EXLED1ADCR\n [GreenLED]
17-03-18 04:02:44.304 -07 000000512 INF: FPGA: Recv EXLED1ADCR 2096
17-03-18 04:02:44.314 -07 000000625 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:02:44.314 -07 000000625 INF: GreenLED: Using Green data: Photodiode ADC 2096 --> 0.9 mW (old method), or 182.2 mW (new method). Difference = 181.2 mW
17-03-18 04:02:44.314 -07 000000625 INF: FPGA: Xmit EXLED2OFF\n [GreenLED]
17-03-18 04:02:44.314 -07 000000455 INF: FPGA: Recv EXLED2OFF 
17-03-18 04:02:44.324 -07 000000625 INF: FPGA: 'EXLED2OFF' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:02:44.324 -07 000000625 INF: GreenLED: LED was on for 21 ms
17-03-18 04:02:44.324 -07 000000625 INF: GreenLED: Snapping GreenLED at power = 5964.000 mW, snap mode for ~0 ms end. Duration was 29 ms.
17-03-18 04:02:44.324 -07 000000610 INF: FPGA: Xmit EMCUR 80\n [Compensator]
17-03-18 04:02:44.324 -07 000000625 INF: FPGA: Recv EMCUR 
17-03-18 04:02:44.334 -07 000000610 INF: FPGA: 'EMCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 04:02:44.334 -07 000000610 INF: FPGA: Xmit EMOUT 20 70\n [Compensator]
17-03-18 04:02:44.834 -07 000000501 INF: FPGA: Recv EMOUT
17-03-18 04:02:44.834 -07 000000610 INF: FPGA: 'EMOUT 20 70' command took 0 ms to send, 493 ms to get response, and 502 ms overall
17-03-18 04:02:44.834 -07 000000610 INF: FPGA: Xmit EMCUR 75\n [Compensator]
17-03-18 04:02:44.834 -07 000000611 INF: FPGA: Recv EMCUR 
17-03-18 04:02:44.844 -07 000000610 INF: FPGA: 'EMCUR 75' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:02:44.844 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 04:02:44.844 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 1 at Y-position 75.38427734375, Z-Position -0.126529140940076. ------
17-03-18 04:02:44.844 -07 000000618 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:02:44.844 -07 000000501 INF: Y Motor: MoveYZ optimized starting. Moving Y to 59.9126 mm, moving Z to -0.17849 mm
17-03-18 04:02:44.844 -07 000000501 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:02:44.844 -07 000000437 INF: Z Motor: Entering MoveAbsStepped (DAC = 38991, sync = True, waitForSettling = False)
17-03-18 04:02:44.844 -07 000000561 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:02:44.844 -07 000000625 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True)
17-03-18 04:02:44.844 -07 000000625 INF: Y Motor: Moving to 59.9126 mm, started at 75.3843 mm, delta = -15.4717 mm
17-03-18 04:02:44.844 -07 000000437 INF: Z Motor: Moving to -0.178489 mm, started at -0.126529 mm, distance = -51.96 um
17-03-18 04:02:44.854 -07 000000625 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:02:44.854 -07 000000618 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 04:02:44.854 -07 000000579 INF: FPGA: Recv YRDPOS 154387
17-03-18 04:02:44.864 -07 000000625 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-18 04:02:44.864 -07 000000437 INF: FPGA: Xmit ZDACW 38991\n [Z Motor]
17-03-18 04:02:44.864 -07 000000625 INF: Y Motor: Encoder = 154387 = motor step 120614.8 = 75.3843 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:02:44.864 -07 000000625 INF: Y Motor: Last commanded position = 75.3806 mm (120608.9 steps), delta from last commanded position = -15.4680 mm (-24748.8 steps). UsingTableMove = False
17-03-18 04:02:44.864 -07 000000625 INF: Y Motor: Moving to 122701 encoder counts
17-03-18 04:02:44.864 -07 000000512 INF: FPGA: Recv ZDACW
17-03-18 04:02:44.874 -07 000000437 INF: FPGA: 'ZDACW 38991' command took 0 ms to send, 0 ms to get response, and 21 ms overall
17-03-18 04:02:44.874 -07 000000618 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:02:44.884 -07 000000625 INF: FPGA: Xmit YMVTO 122701\n [Y Motor]
17-03-18 04:02:44.894 -07 000000437 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:02:44.894 -07 000000480 INF: FPGA: Recv ZDACR 38991
17-03-18 04:02:44.904 -07 000000437 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 04:02:44.904 -07 000000437 INF: Z Motor: MoveAbsStepped took 52 ms (did NOT wait for settling yet))
17-03-18 04:02:45.074 -07 000000561 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:02:45.074 -07 000000618 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 222 ms overall
17-03-18 04:02:46.564 -07 000000590 INF: FPGA: Recv YMVTO 122703 24783
17-03-18 04:02:46.564 -07 000000625 INF: FPGA: 'YMVTO 122701' command took 0 ms to send, 1676 ms to get response, and 1705 ms overall
17-03-18 04:02:46.564 -07 000000625 INF: Y Motor: Position error before settling = 2 encoder counts (0.001 mm)
17-03-18 04:02:46.564 -07 000000625 INF: Y Motor: To move from 75.384 to 59.913 (-15.472 mm) should take 24755 steps, but required 24783 steps (15.489 mm). Slippage = 0.018 mm (0.00%).
17-03-18 04:02:46.564 -07 000000625 INF: Y Motor: FPGA move command 'YMVTO 122701' took 1706 ms, distance = 15.472 mm, average velocity = 9.069 mm/sec
17-03-18 04:02:46.634 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:02:46.634 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 119. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1710, R2=1776, Total=3486. Warn if over 250 bubbles per interval.
17-03-18 04:02:47.884 -07 000000561 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 120, FrontChillerTemperature: 4.009895,
17-03-18 04:02:49.414 -07 000000625 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:02:49.414 -07 000000590 INF: FPGA: Recv YRDPOS 122696
17-03-18 04:02:49.424 -07 000000625 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:02:49.424 -07 000000625 INF: Y Motor: Encoder = 122696 = motor step 95856.3 = 59.9102 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:02:49.454 -07 000000625 INF: Y Motor: After move to 59.912609, error = -0.002453, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:02:49.454 -07 000000625 INF: Y Motor: Position error after settling = -5 encoder counts (-0.002 mm), Delta during settling = -7 counts (-0.003 mm)
17-03-18 04:02:49.454 -07 000000625 INF: Y Motor: Moved to 59.9102 after 4602 ms
17-03-18 04:02:49.454 -07 000000501 INF: Z Motor: EndOfMoveAbsStepped: target = -0.178489 mm (DAC = 38991)
17-03-18 04:02:49.454 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:02:49.464 -07 000000437 INF: FPGA: Recv ZSGSRD 37066
17-03-18 04:02:49.464 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 6 ms overall
17-03-18 04:02:49.464 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:02:49.464 -07 000000618 INF: FPGA: Recv ZSGSRD 37072
17-03-18 04:02:49.474 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 04:02:49.474 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:02:49.474 -07 000000611 INF: FPGA: Recv ZSGSRD 37073
17-03-18 04:02:49.484 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:02:49.484 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:02:49.484 -07 000000611 INF: FPGA: Recv ZSGSRD 37075
17-03-18 04:02:49.494 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:02:49.494 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:02:49.494 -07 000000611 INF: FPGA: Recv ZSGSRD 37078
17-03-18 04:02:49.504 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:02:49.504 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:02:49.504 -07 000000611 INF: FPGA: Recv ZSGSRD 37074
17-03-18 04:02:49.514 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:02:49.514 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:02:49.514 -07 000000618 INF: FPGA: Recv ZSGSRD 37076
17-03-18 04:02:49.524 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:02:49.524 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:02:49.524 -07 000000618 INF: FPGA: Recv ZSGSRD 37077
17-03-18 04:02:49.534 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:02:49.534 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:02:49.534 -07 000000618 INF: FPGA: Recv ZSGSRD 37074
17-03-18 04:02:49.544 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:02:49.544 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:02:49.544 -07 000000618 INF: FPGA: Recv ZSGSRD 37077
17-03-18 04:02:49.554 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:02:49.554 -07 000000501 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:02:49.554 -07 000000618 INF: FPGA: Recv ZPIEZORD 33295
17-03-18 04:02:49.564 -07 000000501 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:02:49.564 -07 000000501 INF: Z Motor: Piezo is near 51.1 V (nominally 0 to 100 V), expect near 59.5 V, since DAC is at 5.950 V. Piezo Error = -8.4 V.
17-03-18 04:02:49.564 -07 000000501 INF: Z Motor: ReadAdcAverage: Commanded Z = -178.5 um, Read 10 ADC samples: Avg = 37074 (-177.6 uncal um), Error = 0.9 uncal um, Median = 37074 (-177.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 37066 (-177.5 uncal um), Max = 37078 (-177.6 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 04:02:49.564 -07 000000501 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37074, posNoise = 4, negNoise = 8
17-03-18 04:02:49.564 -07 000000501 INF: Z Motor: After move to -0.178489, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:02:49.564 -07 000000501 INF: Z Motor: Settle wait time = 4606 ms, measure time = 105 ms (allowed 150 ms), total time = 4711 ms
17-03-18 04:02:49.564 -07 000000501 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 04:02:49.614 -07 000000501 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 4765 ms
17-03-18 04:02:49.614 -07 000000501 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:02:49.614 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:02:49.614 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:02:49.614 -07 000000611 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:02:49.614 -07 000000012 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:02:49.614 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:02:49.614 -07 000000579 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:02:49.614 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:02:49.614 -07 000000012 INF: Camera: sBCa_SetPowerMode(785074288, 1) start.
17-03-18 04:02:49.644 -07 000000012 INF: Camera: sBCa_SetPowerMode(785074288, 1) end. Duration was 23 ms.
17-03-18 04:02:49.644 -07 000000012 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:02:49.644 -07 000000012 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms.
17-03-18 04:02:49.644 -07 000000012 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:02:49.664 -07 000000012 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-18 04:02:49.664 -07 000000012 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 43 ms.
17-03-18 04:02:49.664 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:02:49.704 -07 000000618 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:02:50.004 -07 000000618 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:02:50.004 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:02:50.004 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:02:50.004 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2253754584, 0x0, 559484976) start.
17-03-18 04:02:50.044 -07 000000012 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:02:50.044 -07 000000561 INF: FPGA: Recv CAMSNAP
17-03-18 04:02:50.044 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 384 ms overall
17-03-18 04:02:50.134 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2253754584, 0x0, 559484976) end. Duration was 128 ms.
17-03-18 04:02:50.134 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:02:50.134 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 04:02:50.134 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 131 ms.
17-03-18 04:02:50.244 -07 000000012 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:02:50.244 -07 000000618 INF: Image SNR check: start
17-03-18 04:02:50.244 -07 000000437 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:02:50.254 -07 000000012 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:02:50.254 -07 000000012 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:02:50.254 -07 000000618 INF: Image SNR check: pass  [peak (Max-Min)=142.91]
17-03-18 04:02:50.254 -07 000000618 INF: Autofocus start
17-03-18 04:02:50.254 -07 000000618 INF: MeasureProfile start
17-03-18 04:02:50.264 -07 000000618 INF: MeasureProfile done
17-03-18 04:02:50.264 -07 000000618 INF: X=0  Z correction [um]=-0.0713522
17-03-18 04:02:50.264 -07 000000618 INF: Autofocus finished
17-03-18 04:02:50.454 -07 000000455 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:02:50.454 -07 000000012 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:02:50.454 -07 000000610 INF: ------------ Scan Snapping tile 1 at Y-position 59.91015625, Z-position -0.178494592954781. ----------
17-03-18 04:02:50.454 -07 000000610 INF: Cycle	120	Tile	1	Exposure Settings		A	414	G	199	T	199	C	414
17-03-18 04:02:50.464 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37488, sync = True, waitForSettling = True)
17-03-18 04:02:50.464 -07 000000610 INF: Z Motor: Moving to -0.171609 mm, started at -0.178495 mm, distance = 6.89 um
17-03-18 04:02:50.464 -07 000000610 INF: FPGA: Xmit ZDACW 37488\n [Z Motor]
17-03-18 04:02:50.464 -07 000000625 INF: FPGA: Recv ZDACW
17-03-18 04:02:50.474 -07 000000610 INF: FPGA: 'ZDACW 37488' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 04:02:50.474 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:02:50.474 -07 000000618 INF: FPGA: Recv ZDACR 37488
17-03-18 04:02:50.484 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:02:50.484 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:02:50.634 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:02:50.634 -07 000000512 INF: FPGA: Recv ZSGSRD 36000
17-03-18 04:02:50.644 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:02:50.644 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:02:50.644 -07 000000618 INF: FPGA: Recv ZSGSRD 36004
17-03-18 04:02:50.654 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:02:50.654 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:02:50.654 -07 000000512 INF: FPGA: Recv ZSGSRD 36004
17-03-18 04:02:50.664 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:02:50.664 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:02:50.664 -07 000000618 INF: FPGA: Recv ZSGSRD 36004
17-03-18 04:02:50.674 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:02:50.674 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:02:50.674 -07 000000512 INF: FPGA: Recv ZSGSRD 36003
17-03-18 04:02:50.684 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:02:50.684 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:02:50.684 -07 000000618 INF: FPGA: Recv ZSGSRD 36003
17-03-18 04:02:50.694 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:02:50.694 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:02:50.694 -07 000000512 INF: FPGA: Recv ZSGSRD 36005
17-03-18 04:02:50.704 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:02:50.704 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:02:50.704 -07 000000625 INF: FPGA: Recv ZSGSRD 36010
17-03-18 04:02:50.714 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:02:50.714 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:02:50.714 -07 000000512 INF: FPGA: Recv ZSGSRD 36001
17-03-18 04:02:50.724 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:02:50.724 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:02:50.724 -07 000000512 INF: FPGA: Recv ZSGSRD 36003
17-03-18 04:02:50.734 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:02:50.734 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:02:50.734 -07 000000611 INF: FPGA: Recv ZPIEZORD 31842
17-03-18 04:02:50.744 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:02:50.744 -07 000000610 INF: Z Motor: Piezo is near 48.0 V (nominally 0 to 100 V), expect near 57.2 V, since DAC is at 5.720 V. Piezo Error = -9.2 V.
17-03-18 04:02:50.744 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.6 um, Read 10 ADC samples: Avg = 36004 (-170.7 uncal um), Error = 0.9 uncal um, Median = 36004 (-170.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 36000 (-170.7 uncal um), Max = 36010 (-170.8 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 04:02:50.744 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36004, posNoise = 6, negNoise = 4
17-03-18 04:02:50.744 -07 000000610 INF: Z Motor: After move to -0.171609, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:02:50.744 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 04:02:50.744 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:02:50.744 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:02:50.744 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:02:50.744 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:02:50.744 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:02:50.744 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:02:50.744 -07 000000611 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:02:50.744 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:02:50.744 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:02:50.744 -07 000000501 INF: Camera: sBCa_SetPowerMode(785074704, 1) start.
17-03-18 04:02:50.744 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:02:50.744 -07 000000611 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:02:50.754 -07 000000611 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 04:02:50.754 -07 000000611 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:02:50.764 -07 000000611 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 04:02:50.764 -07 000000611 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 04:02:50.774 -07 000000501 INF: Camera: sBCa_SetPowerMode(785074704, 1) end. Duration was 22 ms.
17-03-18 04:02:50.774 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:02:50.774 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 04:02:50.774 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:02:50.784 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 12 ms.
17-03-18 04:02:50.784 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 40 ms.
17-03-18 04:02:50.784 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 414 414 199 199 37665 150\n [Camera]
17-03-18 04:02:50.984 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:02:51.404 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 606
17-03-18 04:02:51.404 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 606
17-03-18 04:02:51.404 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:02:51.404 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:02:51.404 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) start.
17-03-18 04:02:51.404 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 606
17-03-18 04:02:51.404 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 606
17-03-18 04:02:51.404 -07 000000625 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:02:51.404 -07 000000625 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:02:51.404 -07 000000625 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-18 04:02:51.594 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37665 799
17-03-18 04:02:51.634 -07 000000590 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 0
17-03-18 04:02:51.634 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 119. Bubbles during last 5000 ms interval: R1=0, R2=1, Total=1. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1710, R2=1777, Total=3487. Warn if over 250 bubbles per interval.
17-03-18 04:02:51.744 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning grn on 949
17-03-18 04:02:51.804 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) end. Duration was 401 ms.
17-03-18 04:02:51.804 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 04:02:51.804 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:02:51.804 -07 000000625 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 400 ms.
17-03-18 04:02:51.804 -07 000000625 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 04:02:51.804 -07 000000625 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:02:51.814 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-18 04:02:51.814 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 410 ms.
17-03-18 04:02:51.814 -07 000000625 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-18 04:02:51.824 -07 000000625 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 416 ms.
17-03-18 04:02:51.944 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1148
17-03-18 04:02:51.944 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1148
17-03-18 04:02:51.944 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:02:51.944 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:02:51.944 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 2602438304, 0x0, 391868352) start.
17-03-18 04:02:51.944 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1148
17-03-18 04:02:51.944 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1148
17-03-18 04:02:51.944 -07 000000437 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:02:51.944 -07 000000437 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:02:51.944 -07 000000437 INF: Camera: sBCa_ReadImage(785074704, 2684358704, 0x0, 418435064) start.
17-03-18 04:02:52.134 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP 1341
17-03-18 04:02:52.134 -07 000000579 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:02:52.134 -07 000000610 INF: FPGA: 'CAMDBLSNAP 414 414 199 199 37665 150' command took 5 ms to send, 1336 ms to get response, and 1347 ms overall
17-03-18 04:02:52.134 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 04:02:52.134 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 2 at Y-position 59.91015625, Z-Position -0.171620685963096. ------
17-03-18 04:02:52.144 -07 000000480 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:02:52.144 -07 000000512 INF: Y Motor: MoveYZ optimized starting. Moving Y to 60.7426 mm, moving Z to -0.17786 mm
17-03-18 04:02:52.144 -07 000000512 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:02:52.144 -07 000000590 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:02:52.144 -07 000000579 INF: Z Motor: Entering MoveAbsStepped (DAC = 38853, sync = True, waitForSettling = False)
17-03-18 04:02:52.144 -07 000000579 INF: Z Motor: Moving to -0.177858 mm, started at -0.171621 mm, distance = -6.24 um
17-03-18 04:02:52.144 -07 000000501 INF: Y Motor: Entering MoveAbsStepped (target = 97188 steps, sync = True, waitForSettling = True)
17-03-18 04:02:52.144 -07 000000501 INF: Y Motor: Moving to 60.7426 mm, started at 59.9102 mm, delta = 0.8325 mm
17-03-18 04:02:52.154 -07 000000480 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:02:52.154 -07 000000579 INF: FPGA: Xmit ZDACW 38853\n [Z Motor]
17-03-18 04:02:52.154 -07 000000590 INF: FPGA: Recv ZDACW
17-03-18 04:02:52.164 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:02:52.164 -07 000000579 INF: FPGA: 'ZDACW 38853' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-18 04:02:52.164 -07 000000618 INF: FPGA: Recv YRDPOS 122696
17-03-18 04:02:52.174 -07 000000480 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:02:52.174 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 21 ms overall
17-03-18 04:02:52.174 -07 000000501 INF: Y Motor: Encoder = 122696 = motor step 95856.3 = 59.9102 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:02:52.174 -07 000000501 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:02:52.174 -07 000000501 INF: Y Motor: Moving 1332 steps2
17-03-18 04:02:52.184 -07 000000579 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:02:52.184 -07 000000012 INF: FPGA: Recv ZDACR 38853
17-03-18 04:02:52.194 -07 000000579 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 04:02:52.194 -07 000000579 INF: Z Motor: MoveAbsStepped took 42 ms (did NOT wait for settling yet))
17-03-18 04:02:52.194 -07 000000501 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:02:52.344 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 2602438304, 0x0, 391868352) end. Duration was 402 ms.
17-03-18 04:02:52.344 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 04:02:52.344 -07 000000625 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:02:52.354 -07 000000437 INF: Camera: sBCa_ReadImage(785074704, 2684358704, 0x0, 418435064) end. Duration was 402 ms.
17-03-18 04:02:52.354 -07 000000437 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-18 04:02:52.354 -07 000000437 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:02:52.354 -07 000000625 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-18 04:02:52.354 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 412 ms.
17-03-18 04:02:52.354 -07 000000437 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-18 04:02:52.364 -07 000000437 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 417 ms.
17-03-18 04:02:52.374 -07 000000618 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:02:52.374 -07 000000480 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 04:02:52.564 -07 000000012 INF: FPGA: Recv YMVTILE
17-03-18 04:02:52.564 -07 000000501 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 04:02:52.604 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:02:52.614 -07 000000625 INF: FPGA: Recv YRDPOS 124380
17-03-18 04:02:52.614 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 04:02:52.614 -07 000000501 INF: Y Motor: Encoder = 124380 = motor step 97171.9 = 60.7324 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:02:52.614 -07 000000501 INF: Y Motor: Position error before settling (table move) = -21 encoder counts (-0.010 mm)
17-03-18 04:02:52.614 -07 000000501 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.832 mm, average velocity = 2.092 mm/sec
17-03-18 04:02:53.244 -07 000000611 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 120, FrontChillerTemperature: 3.973092,
17-03-18 04:02:53.564 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:02:53.564 -07 000000611 INF: FPGA: Recv YRDPOS 124380
17-03-18 04:02:53.574 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:02:53.574 -07 000000501 INF: Y Motor: Encoder = 124380 = motor step 97171.9 = 60.7324 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:02:53.604 -07 000000501 INF: Y Motor: After move to 60.742607, error = -0.010185, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:02:53.604 -07 000000501 INF: Y Motor: Position error after settling (table move) = -21 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:02:53.604 -07 000000501 INF: Y Motor: Moved to 60.7324 after 1454 ms (table move)
17-03-18 04:02:53.604 -07 000000512 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177858 mm (DAC = 38853)
17-03-18 04:02:53.604 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:02:53.604 -07 000000501 INF: FPGA: Recv ZSGSRD 36978
17-03-18 04:02:53.614 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 04:02:53.614 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:02:53.614 -07 000000012 INF: FPGA: Recv ZSGSRD 36982
17-03-18 04:02:53.624 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:02:53.624 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:02:53.624 -07 000000501 INF: FPGA: Recv ZSGSRD 36975
17-03-18 04:02:53.634 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:02:53.634 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:02:53.634 -07 000000590 INF: FPGA: Recv ZSGSRD 36976
17-03-18 04:02:53.644 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:02:53.644 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:02:53.644 -07 000000561 INF: FPGA: Recv ZSGSRD 36977
17-03-18 04:02:53.654 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:02:53.654 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:02:53.654 -07 000000501 INF: FPGA: Recv ZSGSRD 36980
17-03-18 04:02:53.664 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:02:53.664 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:02:53.664 -07 000000012 INF: FPGA: Recv ZSGSRD 36978
17-03-18 04:02:53.674 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:02:53.674 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:02:53.674 -07 000000487 INF: FPGA: Recv ZSGSRD 36970
17-03-18 04:02:53.684 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:02:53.684 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:02:53.684 -07 000000625 INF: FPGA: Recv ZSGSRD 36977
17-03-18 04:02:53.694 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:02:53.694 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:02:53.694 -07 000000611 INF: FPGA: Recv ZSGSRD 36979
17-03-18 04:02:53.704 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:02:53.704 -07 000000512 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:02:53.704 -07 000000501 INF: FPGA: Recv ZPIEZORD 33163
17-03-18 04:02:53.714 -07 000000512 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:02:53.714 -07 000000512 INF: Z Motor: Piezo is near 50.8 V (nominally 0 to 100 V), expect near 59.3 V, since DAC is at 5.929 V. Piezo Error = -8.4 V.
17-03-18 04:02:53.714 -07 000000512 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.9 um, Read 10 ADC samples: Avg = 36977 (-177.0 uncal um), Error = 0.9 uncal um, Median = 36978 (-177.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 36970 (-176.9 uncal um), Max = 36982 (-177.0 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 04:02:53.714 -07 000000512 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36977, posNoise = 5, negNoise = 7
17-03-18 04:02:53.714 -07 000000512 INF: Z Motor: After move to -0.177858, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:02:53.714 -07 000000512 INF: Z Motor: Settle wait time = 1458 ms, measure time = 104 ms (allowed 150 ms), total time = 1562 ms
17-03-18 04:02:53.714 -07 000000512 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-18 04:02:53.764 -07 000000512 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1615 ms
17-03-18 04:02:53.764 -07 000000512 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:02:53.764 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:02:53.764 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:02:53.764 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:02:53.764 -07 000000579 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:02:53.764 -07 000000444 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:02:53.764 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:02:53.764 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 04:02:53.764 -07 000000444 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:02:53.774 -07 000000444 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 04:02:53.774 -07 000000444 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:02:53.774 -07 000000444 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 04:02:53.774 -07 000000444 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-18 04:02:53.784 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:02:53.824 -07 000000618 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:02:54.124 -07 000000437 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:02:54.124 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:02:54.124 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:02:54.124 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2268430664, 0x0, 559484976) start.
17-03-18 04:02:54.164 -07 000000618 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:02:54.164 -07 000000487 INF: FPGA: Recv CAMSNAP
17-03-18 04:02:54.164 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 375 ms to get response, and 385 ms overall
17-03-18 04:02:54.254 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2268430664, 0x0, 559484976) end. Duration was 127 ms.
17-03-18 04:02:54.254 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:02:54.254 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 04:02:54.254 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-18 04:02:54.264 -07 000000579 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:02:54.264 -07 000000012 INF: Autofocus start
17-03-18 04:02:54.264 -07 000000012 INF: MeasureProfile start
17-03-18 04:02:54.264 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:02:54.274 -07 000000579 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 04:02:54.274 -07 000000579 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:02:54.274 -07 000000012 INF: MeasureProfile done
17-03-18 04:02:54.274 -07 000000012 INF: X=16  Z correction [um]=0.01042744
17-03-18 04:02:54.274 -07 000000012 INF: Autofocus finished
17-03-18 04:02:54.474 -07 000000501 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:02:54.474 -07 000000579 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:02:54.474 -07 000000610 INF: ------------ Scan Snapping tile 2 at Y-position 60.732421875, Z-position -0.17787144437703. ----------
17-03-18 04:02:54.474 -07 000000610 INF: Cycle	120	Tile	2	Exposure Settings		A	414	G	199	T	199	C	414
17-03-18 04:02:54.484 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37368, sync = True, waitForSettling = True)
17-03-18 04:02:54.484 -07 000000610 INF: Z Motor: Moving to -0.171060 mm, started at -0.177871 mm, distance = 6.81 um
17-03-18 04:02:54.484 -07 000000610 INF: FPGA: Xmit ZDACW 37368\n [Z Motor]
17-03-18 04:02:54.484 -07 000000501 INF: FPGA: Recv ZDACW
17-03-18 04:02:54.494 -07 000000610 INF: FPGA: 'ZDACW 37368' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 04:02:54.494 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:02:54.494 -07 000000480 INF: FPGA: Recv ZDACR 37368
17-03-18 04:02:54.504 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:02:54.504 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:02:54.654 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:02:54.654 -07 000000611 INF: FPGA: Recv ZSGSRD 35921
17-03-18 04:02:54.664 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:02:54.664 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:02:54.664 -07 000000012 INF: FPGA: Recv ZSGSRD 35921
17-03-18 04:02:54.674 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:02:54.674 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:02:54.674 -07 000000501 INF: FPGA: Recv ZSGSRD 35916
17-03-18 04:02:54.684 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:02:54.684 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:02:54.684 -07 000000480 INF: FPGA: Recv ZSGSRD 35918
17-03-18 04:02:54.694 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:02:54.694 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:02:54.694 -07 000000590 INF: FPGA: Recv ZSGSRD 35923
17-03-18 04:02:54.704 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:02:54.704 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:02:54.704 -07 000000455 INF: FPGA: Recv ZSGSRD 35921
17-03-18 04:02:54.714 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:02:54.714 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:02:54.714 -07 000000501 INF: FPGA: Recv ZSGSRD 35913
17-03-18 04:02:54.724 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:02:54.724 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:02:54.724 -07 000000437 INF: FPGA: Recv ZSGSRD 35918
17-03-18 04:02:54.734 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:02:54.734 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:02:54.734 -07 000000444 INF: FPGA: Recv ZSGSRD 35921
17-03-18 04:02:54.744 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:02:54.744 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:02:54.744 -07 000000455 INF: FPGA: Recv ZSGSRD 35921
17-03-18 04:02:54.754 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:02:54.754 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:02:54.754 -07 000000501 INF: FPGA: Recv ZPIEZORD 31750
17-03-18 04:02:54.764 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:02:54.764 -07 000000610 INF: Z Motor: Piezo is near 47.8 V (nominally 0 to 100 V), expect near 57.0 V, since DAC is at 5.702 V. Piezo Error = -9.2 V.
17-03-18 04:02:54.764 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.1 um, Read 10 ADC samples: Avg = 35919 (-170.2 uncal um), Error = 0.9 uncal um, Median = 35921 (-170.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35913 (-170.2 uncal um), Max = 35923 (-170.2 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 04:02:54.764 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35919, posNoise = 4, negNoise = 6
17-03-18 04:02:54.764 -07 000000610 INF: Z Motor: After move to -0.171060, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:02:54.764 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 04:02:54.764 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:02:54.764 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:02:54.764 -07 000000625 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:02:54.764 -07 000000455 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:02:54.764 -07 000000444 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:02:54.764 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:02:54.764 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:02:54.764 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:02:54.764 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 04:02:54.764 -07 000000444 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:02:54.764 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:02:54.764 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:02:54.774 -07 000000444 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 04:02:54.774 -07 000000444 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:02:54.774 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 04:02:54.774 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:02:54.784 -07 000000444 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 18 ms.
17-03-18 04:02:54.784 -07 000000444 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 23 ms.
17-03-18 04:02:54.794 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 17 ms.
17-03-18 04:02:54.794 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 23 ms.
17-03-18 04:02:54.794 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 414 414 199 199 37544 150\n [Camera]
17-03-18 04:02:54.994 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:02:55.404 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 606
17-03-18 04:02:55.404 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 606
17-03-18 04:02:55.404 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:02:55.404 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:02:55.404 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 2719780968, 0x0, 391868352) start.
17-03-18 04:02:55.404 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 606
17-03-18 04:02:55.404 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 606
17-03-18 04:02:55.414 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:02:55.414 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:02:55.414 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2755203232, 0x0, 418435064) start.
17-03-18 04:02:55.594 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37544 799
17-03-18 04:02:55.744 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP turning grn on 949
17-03-18 04:02:55.804 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 2719780968, 0x0, 391868352) end. Duration was 401 ms.
17-03-18 04:02:55.804 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 04:02:55.804 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:02:55.814 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2755203232, 0x0, 418435064) end. Duration was 399 ms.
17-03-18 04:02:55.814 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 04:02:55.814 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:02:55.814 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:02:55.814 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 408 ms.
17-03-18 04:02:55.814 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 04:02:55.824 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-18 04:02:55.944 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1148
17-03-18 04:02:55.944 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1148
17-03-18 04:02:55.944 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:02:56.084 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1148
17-03-18 04:02:56.084 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1148
17-03-18 04:02:56.084 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:02:56.084 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 2818576432, 0x0, 391868352) start.
17-03-18 04:02:56.084 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:02:56.094 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:02:56.094 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) start.
17-03-18 04:02:56.134 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP 1340
17-03-18 04:02:56.144 -07 000000611 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:02:56.144 -07 000000610 INF: FPGA: 'CAMDBLSNAP 414 414 199 199 37544 150' command took 2 ms to send, 1340 ms to get response, and 1348 ms overall
17-03-18 04:02:56.144 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 04:02:56.144 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 3 at Y-position 60.732421875, Z-Position -0.171074627931047. ------
17-03-18 04:02:56.144 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:02:56.144 -07 000000012 INF: Y Motor: MoveYZ optimized starting. Moving Y to 61.5726 mm, moving Z to -0.17781 mm
17-03-18 04:02:56.144 -07 000000012 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:02:56.144 -07 000000444 INF: Y Motor: Entering MoveAbsStepped (target = 98516 steps, sync = True, waitForSettling = True)
17-03-18 04:02:56.144 -07 000000444 INF: Y Motor: Moving to 61.5726 mm, started at 60.7324 mm, delta = 0.8402 mm
17-03-18 04:02:56.144 -07 000000618 INF: Z Motor: Entering MoveAbsStepped (DAC = 38843, sync = True, waitForSettling = False)
17-03-18 04:02:56.144 -07 000000618 INF: Z Motor: Moving to -0.177812 mm, started at -0.171075 mm, distance = -6.74 um
17-03-18 04:02:56.144 -07 000000625 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:02:56.154 -07 000000444 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:02:56.154 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 04:02:56.154 -07 000000437 INF: FPGA: Recv YRDPOS 124381
17-03-18 04:02:56.164 -07 000000444 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-18 04:02:56.164 -07 000000444 INF: Y Motor: Encoder = 124381 = motor step 97172.7 = 60.7329 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:02:56.164 -07 000000501 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:02:56.164 -07 000000444 INF: Y Motor: Last commanded position = 60.7426 mm (97188.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:02:56.164 -07 000000444 INF: Y Motor: Moving 1344 steps-21
17-03-18 04:02:56.174 -07 000000618 INF: FPGA: Xmit ZDACW 38843\n [Z Motor]
17-03-18 04:02:56.174 -07 000000487 INF: FPGA: Recv ZDACW
17-03-18 04:02:56.184 -07 000000444 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:02:56.184 -07 000000618 INF: FPGA: 'ZDACW 38843' command took 0 ms to send, 0 ms to get response, and 32 ms overall
17-03-18 04:02:56.194 -07 000000618 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:02:56.194 -07 000000590 INF: FPGA: Recv ZDACR 38843
17-03-18 04:02:56.204 -07 000000618 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 04:02:56.204 -07 000000618 INF: Z Motor: MoveAbsStepped took 52 ms (did NOT wait for settling yet))
17-03-18 04:02:56.364 -07 000000590 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:02:56.364 -07 000000501 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 212 ms overall
17-03-18 04:02:56.484 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) end. Duration was 387 ms.
17-03-18 04:02:56.484 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-18 04:02:56.484 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:02:56.484 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:02:56.484 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 2818576432, 0x0, 391868352) end. Duration was 396 ms.
17-03-18 04:02:56.484 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 04:02:56.484 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:02:56.484 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:02:56.484 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 540 ms.
17-03-18 04:02:56.494 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-18 04:02:56.554 -07 000000590 INF: FPGA: Recv YMVTILE
17-03-18 04:02:56.554 -07 000000444 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 392 ms overall
17-03-18 04:02:56.604 -07 000000444 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:02:56.604 -07 000000579 INF: FPGA: Recv YRDPOS 126081
17-03-18 04:02:56.614 -07 000000444 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 04:02:56.614 -07 000000444 INF: Y Motor: Encoder = 126081 = motor step 98500.8 = 61.5630 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:02:56.614 -07 000000444 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-18 04:02:56.614 -07 000000444 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 392 ms, distance = 0.840 mm, average velocity = 2.143 mm/sec
17-03-18 04:02:56.634 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:02:56.634 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 119. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1710, R2=1777, Total=3487. Warn if over 250 bubbles per interval.
17-03-18 04:02:57.564 -07 000000444 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:02:57.564 -07 000000501 INF: FPGA: Recv YRDPOS 126081
17-03-18 04:02:57.574 -07 000000444 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:02:57.574 -07 000000444 INF: Y Motor: Encoder = 126081 = motor step 98500.8 = 61.5630 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:02:57.604 -07 000000444 INF: Y Motor: After move to 61.572609, error = -0.009621, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:02:57.604 -07 000000444 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:02:57.604 -07 000000444 INF: Y Motor: Moved to 61.5630 after 1452 ms (table move)
17-03-18 04:02:57.604 -07 000000012 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177812 mm (DAC = 38843)
17-03-18 04:02:57.604 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:02:57.604 -07 000000611 INF: FPGA: Recv ZSGSRD 36972
17-03-18 04:02:57.614 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 04:02:57.614 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:02:57.614 -07 000000444 INF: FPGA: Recv ZSGSRD 36971
17-03-18 04:02:57.624 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:02:57.624 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:02:57.624 -07 000000512 INF: FPGA: Recv ZSGSRD 36967
17-03-18 04:02:57.634 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:02:57.634 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:02:57.634 -07 000000444 INF: FPGA: Recv ZSGSRD 36972
17-03-18 04:02:57.644 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:02:57.644 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:02:57.644 -07 000000590 INF: FPGA: Recv ZSGSRD 36970
17-03-18 04:02:57.654 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:02:57.654 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:02:57.654 -07 000000512 INF: FPGA: Recv ZSGSRD 36974
17-03-18 04:02:57.664 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:02:57.664 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:02:57.664 -07 000000455 INF: FPGA: Recv ZSGSRD 36969
17-03-18 04:02:57.674 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 04:02:57.674 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:02:57.674 -07 000000611 INF: FPGA: Recv ZSGSRD 36963
17-03-18 04:02:57.684 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:02:57.684 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:02:57.684 -07 000000455 INF: FPGA: Recv ZSGSRD 36973
17-03-18 04:02:57.694 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:02:57.694 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:02:57.694 -07 000000561 INF: FPGA: Recv ZSGSRD 36971
17-03-18 04:02:57.704 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:02:57.704 -07 000000012 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:02:57.704 -07 000000512 INF: FPGA: Recv ZPIEZORD 33175
17-03-18 04:02:57.714 -07 000000012 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:02:57.714 -07 000000012 INF: Z Motor: Piezo is near 50.9 V (nominally 0 to 100 V), expect near 59.3 V, since DAC is at 5.927 V. Piezo Error = -8.4 V.
17-03-18 04:02:57.714 -07 000000012 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.8 um, Read 10 ADC samples: Avg = 36970 (-176.9 uncal um), Error = 0.9 uncal um, Median = 36971 (-176.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 36963 (-176.9 uncal um), Max = 36974 (-177.0 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 04:02:57.714 -07 000000012 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36970, posNoise = 4, negNoise = 7
17-03-18 04:02:57.714 -07 000000012 INF: Z Motor: After move to -0.177812, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:02:57.714 -07 000000012 INF: Z Motor: Settle wait time = 1455 ms, measure time = 107 ms (allowed 150 ms), total time = 1562 ms
17-03-18 04:02:57.714 -07 000000012 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-18 04:02:57.764 -07 000000012 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1614 ms
17-03-18 04:02:57.764 -07 000000012 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:02:57.764 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:02:57.764 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:02:57.774 -07 000000625 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:02:57.774 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:02:57.774 -07 000000437 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:02:57.774 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:02:57.774 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 3 ms.
17-03-18 04:02:57.774 -07 000000437 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:02:57.774 -07 000000437 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 04:02:57.774 -07 000000437 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:02:57.784 -07 000000437 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 9 ms.
17-03-18 04:02:57.784 -07 000000437 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-18 04:02:57.794 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:02:57.834 -07 000000590 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:02:58.134 -07 000000012 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:02:58.134 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:02:58.134 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:02:58.144 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2281705520, 0x0, 559484976) start.
17-03-18 04:02:58.174 -07 000000561 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:02:58.174 -07 000000512 INF: FPGA: Recv CAMSNAP
17-03-18 04:02:58.174 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 378 ms to get response, and 385 ms overall
17-03-18 04:02:58.254 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2281705520, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 04:02:58.254 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:02:58.254 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 04:02:58.254 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 04:02:58.274 -07 000000012 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:02:58.274 -07 000000618 INF: Autofocus start
17-03-18 04:02:58.274 -07 000000618 INF: MeasureProfile start
17-03-18 04:02:58.274 -07 000000455 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:02:58.284 -07 000000012 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 04:02:58.294 -07 000000618 INF: MeasureProfile done
17-03-18 04:02:58.294 -07 000000012 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:02:58.294 -07 000000618 INF: X=16  Z correction [um]=0.01042744
17-03-18 04:02:58.294 -07 000000618 INF: Autofocus finished
17-03-18 04:02:58.494 -07 000000590 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:02:58.494 -07 000000012 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 212 ms overall
17-03-18 04:02:58.494 -07 000000610 INF: ------------ Scan Snapping tile 3 at Y-position 61.56298828125, Z-position -0.177826474892038. ----------
17-03-18 04:02:58.494 -07 000000610 INF: Cycle	120	Tile	3	Exposure Settings		A	414	G	199	T	199	C	414
17-03-18 04:02:58.504 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37358, sync = True, waitForSettling = True)
17-03-18 04:02:58.504 -07 000000610 INF: Z Motor: Moving to -0.171014 mm, started at -0.177826 mm, distance = 6.81 um
17-03-18 04:02:58.504 -07 000000610 INF: FPGA: Xmit ZDACW 37358\n [Z Motor]
17-03-18 04:02:58.504 -07 000000590 INF: FPGA: Recv ZDACW
17-03-18 04:02:58.514 -07 000000610 INF: FPGA: 'ZDACW 37358' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 04:02:58.514 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:02:58.514 -07 000000437 INF: FPGA: Recv ZDACR 37358
17-03-18 04:02:58.524 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:02:58.524 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:02:58.604 -07 000000501 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 120, FrontChillerTemperature: 3.955391,
17-03-18 04:02:58.674 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:02:58.674 -07 000000590 INF: FPGA: Recv ZSGSRD 35909
17-03-18 04:02:58.684 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:02:58.684 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:02:58.684 -07 000000512 INF: FPGA: Recv ZSGSRD 35917
17-03-18 04:02:58.694 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:02:58.694 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:02:58.694 -07 000000611 INF: FPGA: Recv ZSGSRD 35911
17-03-18 04:02:58.704 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:02:58.704 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:02:58.704 -07 000000444 INF: FPGA: Recv ZSGSRD 35907
17-03-18 04:02:58.714 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:02:58.714 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:02:58.714 -07 000000561 INF: FPGA: Recv ZSGSRD 35913
17-03-18 04:02:58.724 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:02:58.724 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:02:58.724 -07 000000512 INF: FPGA: Recv ZSGSRD 35907
17-03-18 04:02:58.734 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:02:58.734 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:02:58.734 -07 000000611 INF: FPGA: Recv ZSGSRD 35909
17-03-18 04:02:58.744 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:02:58.744 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:02:58.744 -07 000000444 INF: FPGA: Recv ZSGSRD 35911
17-03-18 04:02:58.754 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:02:58.754 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:02:58.754 -07 000000561 INF: FPGA: Recv ZSGSRD 35911
17-03-18 04:02:58.764 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:02:58.764 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:02:58.764 -07 000000512 INF: FPGA: Recv ZSGSRD 35915
17-03-18 04:02:58.774 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:02:58.774 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:02:58.774 -07 000000611 INF: FPGA: Recv ZPIEZORD 31757
17-03-18 04:02:58.784 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:02:58.784 -07 000000610 INF: Z Motor: Piezo is near 47.8 V (nominally 0 to 100 V), expect near 57.0 V, since DAC is at 5.700 V. Piezo Error = -9.2 V.
17-03-18 04:02:58.784 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.0 um, Read 10 ADC samples: Avg = 35911 (-170.1 uncal um), Error = 0.9 uncal um, Median = 35911 (-170.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35907 (-170.1 uncal um), Max = 35917 (-170.2 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 04:02:58.784 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35911, posNoise = 6, negNoise = 4
17-03-18 04:02:58.784 -07 000000610 INF: Z Motor: After move to -0.171014, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:02:58.784 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 04:02:58.784 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:02:58.784 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:02:58.784 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:02:58.784 -07 000000590 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:02:58.784 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:02:58.784 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:02:58.784 -07 000000487 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:02:58.784 -07 000000487 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:02:58.784 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:02:58.784 -07 000000590 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:02:58.784 -07 000000487 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:02:58.784 -07 000000487 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:02:58.794 -07 000000590 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 04:02:58.794 -07 000000590 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:02:58.794 -07 000000487 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 04:02:58.794 -07 000000487 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:02:58.804 -07 000000590 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 04:02:58.804 -07 000000590 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 04:02:58.804 -07 000000487 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-18 04:02:58.804 -07 000000487 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 04:02:58.804 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 414 414 199 199 37534 150\n [Camera]
17-03-18 04:02:59.004 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:02:59.414 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 606
17-03-18 04:02:59.414 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 606
17-03-18 04:02:59.414 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:02:59.424 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 606
17-03-18 04:02:59.424 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 606
17-03-18 04:02:59.424 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:02:59.424 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:02:59.424 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 2300786904, 0x0, 391868352) start.
17-03-18 04:02:59.434 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:02:59.434 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-18 04:02:59.614 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37534 799
17-03-18 04:02:59.764 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP turning grn on 949
17-03-18 04:02:59.804 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 2300786904, 0x0, 391868352) end. Duration was 383 ms.
17-03-18 04:02:59.804 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-18 04:02:59.804 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:02:59.804 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 377 ms.
17-03-18 04:02:59.804 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-18 04:02:59.804 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:02:59.814 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:02:59.814 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-18 04:02:59.814 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:02:59.824 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-18 04:02:59.964 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1148
17-03-18 04:02:59.964 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1148
17-03-18 04:02:59.964 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:02:59.964 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1148
17-03-18 04:02:59.964 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1148
17-03-18 04:02:59.964 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:02:59.964 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:02:59.964 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-18 04:02:59.974 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:02:59.974 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) start.
17-03-18 04:03:00.154 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP 1340
17-03-18 04:03:00.154 -07 000000487 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:03:00.154 -07 000000610 INF: FPGA: 'CAMDBLSNAP 414 414 199 199 37534 150' command took 2 ms to send, 1342 ms to get response, and 1347 ms overall
17-03-18 04:03:00.154 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 04:03:00.154 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 4 at Y-position 61.56298828125, Z-Position -0.171023234233913. ------
17-03-18 04:03:00.154 -07 000000561 INF: Y Motor: MoveYZ optimized starting. Moving Y to 62.4026 mm, moving Z to -0.17719 mm
17-03-18 04:03:00.154 -07 000000561 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:03:00.154 -07 000000590 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:03:00.164 -07 000000579 INF: Z Motor: Entering MoveAbsStepped (DAC = 38707, sync = True, waitForSettling = False)
17-03-18 04:03:00.164 -07 000000579 INF: Z Motor: Moving to -0.177189 mm, started at -0.171023 mm, distance = -6.17 um
17-03-18 04:03:00.164 -07 000000012 INF: Y Motor: Entering MoveAbsStepped (target = 99844 steps, sync = True, waitForSettling = True)
17-03-18 04:03:00.164 -07 000000012 INF: Y Motor: Moving to 62.4026 mm, started at 61.5630 mm, delta = 0.8396 mm
17-03-18 04:03:00.164 -07 000000455 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:03:00.164 -07 000000590 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 4 ms to get response, and 6 ms overall
17-03-18 04:03:00.164 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:03:00.164 -07 000000625 INF: FPGA: Recv YRDPOS 126082
17-03-18 04:03:00.174 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 04:03:00.174 -07 000000012 INF: Y Motor: Encoder = 126082 = motor step 98501.6 = 61.5635 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:03:00.174 -07 000000590 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:03:00.174 -07 000000012 INF: Y Motor: Last commanded position = 61.5726 mm (98516.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:03:00.174 -07 000000012 INF: Y Motor: Moving 1343 steps-20
17-03-18 04:03:00.184 -07 000000579 INF: FPGA: Xmit ZDACW 38707\n [Z Motor]
17-03-18 04:03:00.184 -07 000000455 INF: FPGA: Recv ZDACW
17-03-18 04:03:00.194 -07 000000579 INF: FPGA: 'ZDACW 38707' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-18 04:03:00.194 -07 000000012 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:03:00.204 -07 000000579 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:03:00.204 -07 000000455 INF: FPGA: Recv ZDACR 38707
17-03-18 04:03:00.214 -07 000000579 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 04:03:00.214 -07 000000579 INF: Z Motor: MoveAbsStepped took 45 ms (did NOT wait for settling yet))
17-03-18 04:03:00.364 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 398 ms.
17-03-18 04:03:00.364 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 04:03:00.364 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:03:00.374 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:03:00.374 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 408 ms.
17-03-18 04:03:00.374 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) end. Duration was 397 ms.
17-03-18 04:03:00.374 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-18 04:03:00.374 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:03:00.374 -07 000000480 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:03:00.374 -07 000000590 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 208 ms overall
17-03-18 04:03:00.374 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:03:00.384 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 416 ms.
17-03-18 04:03:00.564 -07 000000611 INF: FPGA: Recv YMVTILE
17-03-18 04:03:00.564 -07 000000012 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 394 ms overall
17-03-18 04:03:00.614 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:03:00.614 -07 000000444 INF: FPGA: Recv YRDPOS 127785
17-03-18 04:03:00.624 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 04:03:00.624 -07 000000012 INF: Y Motor: Encoder = 127785 = motor step 99832.0 = 62.3950 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:03:00.624 -07 000000012 INF: Y Motor: Position error before settling (table move) = -16 encoder counts (-0.008 mm)
17-03-18 04:03:00.624 -07 000000012 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.840 mm, average velocity = 2.131 mm/sec
17-03-18 04:03:01.574 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:03:01.574 -07 000000444 INF: FPGA: Recv YRDPOS 127785
17-03-18 04:03:01.584 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:03:01.584 -07 000000012 INF: Y Motor: Encoder = 127785 = motor step 99832.0 = 62.3950 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:03:01.604 -07 000000012 INF: Y Motor: After move to 62.402607, error = -0.007587, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:03:01.604 -07 000000012 INF: Y Motor: Position error after settling (table move) = -16 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:03:01.604 -07 000000012 INF: Y Motor: Moved to 62.3950 after 1445 ms (table move)
17-03-18 04:03:01.614 -07 000000561 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177189 mm (DAC = 38707)
17-03-18 04:03:01.614 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:01.614 -07 000000618 INF: FPGA: Recv ZSGSRD 36876
17-03-18 04:03:01.624 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 04:03:01.624 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:01.624 -07 000000501 INF: FPGA: Recv ZSGSRD 36872
17-03-18 04:03:01.634 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:01.634 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:01.634 -07 000000625 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:03:01.634 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 119. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1710, R2=1777, Total=3487. Warn if over 250 bubbles per interval.
17-03-18 04:03:01.634 -07 000000455 INF: FPGA: Recv ZSGSRD 36881
17-03-18 04:03:01.644 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:01.644 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:01.644 -07 000000590 INF: FPGA: Recv ZSGSRD 36873
17-03-18 04:03:01.654 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:01.654 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:01.654 -07 000000501 INF: FPGA: Recv ZSGSRD 36865
17-03-18 04:03:01.664 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:01.664 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:01.664 -07 000000437 INF: FPGA: Recv ZSGSRD 36870
17-03-18 04:03:01.674 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:01.674 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:01.674 -07 000000501 INF: FPGA: Recv ZSGSRD 36867
17-03-18 04:03:01.684 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:01.684 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:01.684 -07 000000012 INF: FPGA: Recv ZSGSRD 36871
17-03-18 04:03:01.694 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:01.694 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:01.694 -07 000000487 INF: FPGA: Recv ZSGSRD 36876
17-03-18 04:03:01.704 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:01.704 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:01.704 -07 000000590 INF: FPGA: Recv ZSGSRD 36875
17-03-18 04:03:01.714 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:01.714 -07 000000561 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:03:01.714 -07 000000444 INF: FPGA: Recv ZPIEZORD 33015
17-03-18 04:03:01.724 -07 000000561 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:01.724 -07 000000561 INF: Z Motor: Piezo is near 50.5 V (nominally 0 to 100 V), expect near 59.1 V, since DAC is at 5.906 V. Piezo Error = -8.5 V.
17-03-18 04:03:01.724 -07 000000561 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.2 um, Read 10 ADC samples: Avg = 36873 (-176.3 uncal um), Error = 0.9 uncal um, Median = 36872 (-176.3 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 36865 (-176.3 uncal um), Max = 36881 (-176.4 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 04:03:01.724 -07 000000561 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36873, posNoise = 8, negNoise = 8
17-03-18 04:03:01.724 -07 000000561 INF: Z Motor: After move to -0.177189, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:03:01.724 -07 000000561 INF: Z Motor: Settle wait time = 1449 ms, measure time = 107 ms (allowed 150 ms), total time = 1556 ms
17-03-18 04:03:01.724 -07 000000561 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-18 04:03:01.774 -07 000000561 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1611 ms
17-03-18 04:03:01.774 -07 000000561 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:03:01.774 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:03:01.774 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:03:01.774 -07 000000611 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:03:01.774 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:03:01.774 -07 000000512 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:03:01.774 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:03:01.774 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:03:01.774 -07 000000512 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:03:01.784 -07 000000512 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 04:03:01.784 -07 000000512 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:03:01.794 -07 000000512 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-18 04:03:01.794 -07 000000512 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 14 ms.
17-03-18 04:03:01.794 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:03:01.844 -07 000000561 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:03:02.134 -07 000000618 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:03:02.134 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:03:02.144 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:03:02.144 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2486767776, 0x0, 559484976) start.
17-03-18 04:03:02.174 -07 000000611 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:03:02.174 -07 000000480 INF: FPGA: Recv CAMSNAP
17-03-18 04:03:02.174 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 379 ms to get response, and 384 ms overall
17-03-18 04:03:02.264 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2486767776, 0x0, 559484976) end. Duration was 126 ms.
17-03-18 04:03:02.264 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:03:02.274 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 04:03:02.274 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-18 04:03:02.284 -07 000000611 INF: Autofocus start
17-03-18 04:03:02.284 -07 000000611 INF: MeasureProfile start
17-03-18 04:03:02.284 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:03:02.284 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:03:02.294 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 04:03:02.294 -07 000000512 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:03:02.294 -07 000000611 INF: MeasureProfile done
17-03-18 04:03:02.294 -07 000000611 INF: X=0  Z correction [um]=-0.0713522
17-03-18 04:03:02.294 -07 000000611 INF: Autofocus finished
17-03-18 04:03:02.494 -07 000000590 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:03:02.494 -07 000000512 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:03:02.494 -07 000000610 INF: ------------ Scan Snapping tile 4 at Y-position 62.39501953125, Z-position -0.177203326314287. ----------
17-03-18 04:03:02.504 -07 000000610 INF: Cycle	120	Tile	4	Exposure Settings		A	414	G	199	T	199	C	414
17-03-18 04:03:02.504 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37204, sync = True, waitForSettling = True)
17-03-18 04:03:02.504 -07 000000610 INF: Z Motor: Moving to -0.170309 mm, started at -0.177203 mm, distance = 6.89 um
17-03-18 04:03:02.504 -07 000000610 INF: FPGA: Xmit ZDACW 37204\n [Z Motor]
17-03-18 04:03:02.504 -07 000000437 INF: FPGA: Recv ZDACW
17-03-18 04:03:02.514 -07 000000610 INF: FPGA: 'ZDACW 37204' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 04:03:02.514 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:03:02.514 -07 000000012 INF: FPGA: Recv ZDACR 37204
17-03-18 04:03:02.524 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:02.524 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:03:02.674 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:02.674 -07 000000487 INF: FPGA: Recv ZSGSRD 35803
17-03-18 04:03:02.684 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:02.684 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:02.684 -07 000000501 INF: FPGA: Recv ZSGSRD 35792
17-03-18 04:03:02.694 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:02.694 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:02.694 -07 000000437 INF: FPGA: Recv ZSGSRD 35799
17-03-18 04:03:02.704 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:02.704 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:02.704 -07 000000480 INF: FPGA: Recv ZSGSRD 35802
17-03-18 04:03:02.714 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:02.714 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:02.714 -07 000000487 INF: FPGA: Recv ZSGSRD 35797
17-03-18 04:03:02.724 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:02.724 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:02.724 -07 000000501 INF: FPGA: Recv ZSGSRD 35798
17-03-18 04:03:02.734 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:02.734 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:02.734 -07 000000437 INF: FPGA: Recv ZSGSRD 35803
17-03-18 04:03:02.744 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:02.744 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:02.744 -07 000000455 INF: FPGA: Recv ZSGSRD 35808
17-03-18 04:03:02.754 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:02.754 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:02.754 -07 000000480 INF: FPGA: Recv ZSGSRD 35798
17-03-18 04:03:02.764 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:02.764 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:02.764 -07 000000590 INF: FPGA: Recv ZSGSRD 35795
17-03-18 04:03:02.774 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:02.774 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:03:02.774 -07 000000444 INF: FPGA: Recv ZPIEZORD 31616
17-03-18 04:03:02.784 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:02.784 -07 000000610 INF: Z Motor: Piezo is near 47.5 V (nominally 0 to 100 V), expect near 56.8 V, since DAC is at 5.677 V. Piezo Error = -9.2 V.
17-03-18 04:03:02.784 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.3 um, Read 10 ADC samples: Avg = 35800 (-169.4 uncal um), Error = 0.9 uncal um, Median = 35798 (-169.4 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 35792 (-169.4 uncal um), Max = 35808 (-169.5 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 04:03:02.784 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35800, posNoise = 8, negNoise = 8
17-03-18 04:03:02.784 -07 000000610 INF: Z Motor: After move to -0.170309, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:03:02.784 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 04:03:02.784 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:03:02.784 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:03:02.794 -07 000000579 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:03:02.794 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:03:02.794 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:03:02.794 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:03:02.794 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:03:02.794 -07 000000590 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:03:02.794 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:03:02.794 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:03:02.794 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:03:02.794 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:03:02.804 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-18 04:03:02.804 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:03:02.804 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-18 04:03:02.804 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:03:02.814 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 04:03:02.814 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 04:03:02.814 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 04:03:02.814 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 23 ms.
17-03-18 04:03:02.814 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 414 414 199 199 37381 150\n [Camera]
17-03-18 04:03:03.014 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:03:03.434 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 606
17-03-18 04:03:03.434 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 606
17-03-18 04:03:03.434 -07 000000487 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:03:03.434 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 606
17-03-18 04:03:03.434 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 606
17-03-18 04:03:03.434 -07 000000444 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:03:03.444 -07 000000487 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:03:03.444 -07 000000487 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) start.
17-03-18 04:03:03.444 -07 000000444 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:03:03.444 -07 000000444 INF: Camera: sBCa_ReadImage(785074704, 2602438304, 0x0, 418435064) start.
17-03-18 04:03:03.624 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37381 799
17-03-18 04:03:03.774 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning grn on 949
17-03-18 04:03:03.824 -07 000000487 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) end. Duration was 384 ms.
17-03-18 04:03:03.824 -07 000000487 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-18 04:03:03.824 -07 000000487 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:03:03.834 -07 000000444 INF: Camera: sBCa_ReadImage(785074704, 2602438304, 0x0, 418435064) end. Duration was 383 ms.
17-03-18 04:03:03.834 -07 000000444 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 383 ms.
17-03-18 04:03:03.834 -07 000000444 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:03:03.834 -07 000000487 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:03:03.834 -07 000000487 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 04:03:03.834 -07 000000444 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:03:03.844 -07 000000444 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 405 ms.
17-03-18 04:03:03.964 -07 000000579 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 120, FrontChillerTemperature: 3.974486,
17-03-18 04:03:03.974 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1148
17-03-18 04:03:03.974 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1148
17-03-18 04:03:03.974 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:03:03.974 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1148
17-03-18 04:03:03.974 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1148
17-03-18 04:03:03.984 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:03:03.984 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 04:03:03.984 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:03:03.984 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:03:03.984 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 04:03:04.164 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP 1341
17-03-18 04:03:04.164 -07 000000487 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:03:04.164 -07 000000610 INF: FPGA: 'CAMDBLSNAP 414 414 199 199 37381 150' command took 2 ms to send, 1337 ms to get response, and 1347 ms overall
17-03-18 04:03:04.164 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 04:03:04.164 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 5 at Y-position 62.39501953125, Z-Position -0.170310146686177. ------
17-03-18 04:03:04.174 -07 000000579 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:03:04.174 -07 000000501 INF: Y Motor: MoveYZ optimized starting. Moving Y to 63.2326 mm, moving Z to -0.17697 mm
17-03-18 04:03:04.174 -07 000000501 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:03:04.174 -07 000000480 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:03:04.174 -07 000000012 INF: Y Motor: Entering MoveAbsStepped (target = 101172 steps, sync = True, waitForSettling = True)
17-03-18 04:03:04.174 -07 000000012 INF: Y Motor: Moving to 63.2326 mm, started at 62.3950 mm, delta = 0.8376 mm
17-03-18 04:03:04.174 -07 000000590 INF: Z Motor: Entering MoveAbsStepped (DAC = 38659, sync = True, waitForSettling = False)
17-03-18 04:03:04.174 -07 000000590 INF: Z Motor: Moving to -0.176970 mm, started at -0.170310 mm, distance = -6.66 um
17-03-18 04:03:04.184 -07 000000579 INF: FPGA: 'FOCMRRCUR 80' command took 1 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:03:04.184 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:03:04.184 -07 000000611 INF: FPGA: Recv YRDPOS 127785
17-03-18 04:03:04.194 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-18 04:03:04.194 -07 000000590 INF: FPGA: Xmit ZDACW 38659\n [Z Motor]
17-03-18 04:03:04.194 -07 000000012 INF: Y Motor: Encoder = 127785 = motor step 99832.0 = 62.3950 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:03:04.194 -07 000000012 INF: Y Motor: Last commanded position = 62.4026 mm (99844.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:03:04.194 -07 000000012 INF: Y Motor: Moving 1340 steps-16
17-03-18 04:03:04.194 -07 000000437 INF: FPGA: Recv ZDACW
17-03-18 04:03:04.204 -07 000000579 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:03:04.204 -07 000000590 INF: FPGA: 'ZDACW 38659' command took 0 ms to send, 0 ms to get response, and 20 ms overall
17-03-18 04:03:04.214 -07 000000012 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:03:04.224 -07 000000590 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:03:04.224 -07 000000625 INF: FPGA: Recv ZDACR 38659
17-03-18 04:03:04.234 -07 000000590 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 04:03:04.234 -07 000000590 INF: Z Motor: MoveAbsStepped took 50 ms (did NOT wait for settling yet))
17-03-18 04:03:04.364 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 380 ms.
17-03-18 04:03:04.364 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-18 04:03:04.364 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:03:04.364 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 384 ms.
17-03-18 04:03:04.364 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-18 04:03:04.364 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:03:04.364 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:03:04.364 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:03:04.364 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-18 04:03:04.374 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-18 04:03:04.404 -07 000000444 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:03:04.404 -07 000000579 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 04:03:04.594 -07 000000561 INF: FPGA: Recv YMVTILE
17-03-18 04:03:04.594 -07 000000012 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 370 ms to get response, and 399 ms overall
17-03-18 04:03:04.634 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:03:04.644 -07 000000437 INF: FPGA: Recv YRDPOS 129481
17-03-18 04:03:04.644 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 04:03:04.644 -07 000000012 INF: Y Motor: Encoder = 129481 = motor step 101157.0 = 63.2231 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:03:04.644 -07 000000012 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm)
17-03-18 04:03:04.644 -07 000000012 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 400 ms, distance = 0.838 mm, average velocity = 2.094 mm/sec
17-03-18 04:03:05.594 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:03:05.594 -07 000000455 INF: FPGA: Recv YRDPOS 129482
17-03-18 04:03:05.604 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:03:05.604 -07 000000012 INF: Y Motor: Encoder = 129482 = motor step 101157.8 = 63.2236 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:03:05.634 -07 000000012 INF: Y Motor: After move to 63.232609, error = -0.008976, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:03:05.634 -07 000000012 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 04:03:05.634 -07 000000012 INF: Y Motor: Moved to 63.2236 after 1453 ms (table move)
17-03-18 04:03:05.634 -07 000000501 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176970 mm (DAC = 38659)
17-03-18 04:03:05.634 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:05.634 -07 000000444 INF: FPGA: Recv ZSGSRD 36830
17-03-18 04:03:05.644 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 04:03:05.644 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:05.644 -07 000000590 INF: FPGA: Recv ZSGSRD 36828
17-03-18 04:03:05.654 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:05.654 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:05.654 -07 000000012 INF: FPGA: Recv ZSGSRD 36839
17-03-18 04:03:05.664 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:05.664 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:05.664 -07 000000480 INF: FPGA: Recv ZSGSRD 36830
17-03-18 04:03:05.674 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:05.674 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:05.674 -07 000000012 INF: FPGA: Recv ZSGSRD 36837
17-03-18 04:03:05.684 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:05.684 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:05.684 -07 000000590 INF: FPGA: Recv ZSGSRD 36834
17-03-18 04:03:05.694 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:05.694 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:05.694 -07 000000487 INF: FPGA: Recv ZSGSRD 36837
17-03-18 04:03:05.704 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:05.704 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:05.704 -07 000000012 INF: FPGA: Recv ZSGSRD 36833
17-03-18 04:03:05.714 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:05.714 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:05.714 -07 000000590 INF: FPGA: Recv ZSGSRD 36832
17-03-18 04:03:05.724 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:05.724 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:05.724 -07 000000437 INF: FPGA: Recv ZSGSRD 36837
17-03-18 04:03:05.734 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:05.734 -07 000000501 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:03:05.734 -07 000000590 INF: FPGA: Recv ZPIEZORD 32994
17-03-18 04:03:05.744 -07 000000501 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:05.744 -07 000000501 INF: Z Motor: Piezo is near 50.5 V (nominally 0 to 100 V), expect near 59.0 V, since DAC is at 5.899 V. Piezo Error = -8.5 V.
17-03-18 04:03:05.744 -07 000000501 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.0 um, Read 10 ADC samples: Avg = 36834 (-176.1 uncal um), Error = 0.9 uncal um, Median = 36834 (-176.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 36828 (-176.0 uncal um), Max = 36839 (-176.1 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 04:03:05.744 -07 000000501 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36834, posNoise = 5, negNoise = 6
17-03-18 04:03:05.744 -07 000000501 INF: Z Motor: After move to -0.176970, error = 0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:03:05.744 -07 000000501 INF: Z Motor: Settle wait time = 1456 ms, measure time = 105 ms (allowed 150 ms), total time = 1561 ms
17-03-18 04:03:05.744 -07 000000501 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 04:03:05.794 -07 000000501 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1616 ms
17-03-18 04:03:05.794 -07 000000501 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:03:05.794 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:03:05.794 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:03:05.794 -07 000000444 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:03:05.794 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:03:05.794 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:03:05.794 -07 000000487 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:03:05.794 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:03:05.794 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:03:05.804 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 04:03:05.804 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:03:05.804 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 04:03:05.804 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 04:03:05.814 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:03:05.854 -07 000000501 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:03:06.154 -07 000000012 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:03:06.154 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:03:06.154 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:03:06.164 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2505849160, 0x0, 559484976) start.
17-03-18 04:03:06.194 -07 000000455 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:03:06.194 -07 000000618 INF: FPGA: Recv CAMSNAP
17-03-18 04:03:06.194 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 04:03:06.274 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2505849160, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 04:03:06.274 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:03:06.274 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 04:03:06.274 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 120 ms.
17-03-18 04:03:06.294 -07 000000487 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:03:06.294 -07 000000455 INF: Autofocus start
17-03-18 04:03:06.294 -07 000000455 INF: MeasureProfile start
17-03-18 04:03:06.294 -07 000000512 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:03:06.304 -07 000000487 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 04:03:06.304 -07 000000487 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:03:06.304 -07 000000455 INF: MeasureProfile done
17-03-18 04:03:06.304 -07 000000455 INF: X=16  Z correction [um]=0.01042744
17-03-18 04:03:06.304 -07 000000455 INF: Autofocus finished
17-03-18 04:03:06.504 -07 000000611 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:03:06.504 -07 000000487 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:03:06.504 -07 000000610 INF: ------------ Scan Snapping tile 5 at Y-position 63.2236328125, Z-position -0.176952782040758. ----------
17-03-18 04:03:06.514 -07 000000610 INF: Cycle	120	Tile	5	Exposure Settings		A	414	G	199	T	199	C	414
17-03-18 04:03:06.514 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37174, sync = True, waitForSettling = True)
17-03-18 04:03:06.514 -07 000000610 INF: Z Motor: Moving to -0.170172 mm, started at -0.176953 mm, distance = 6.78 um
17-03-18 04:03:06.514 -07 000000610 INF: FPGA: Xmit ZDACW 37174\n [Z Motor]
17-03-18 04:03:06.514 -07 000000625 INF: FPGA: Recv ZDACW
17-03-18 04:03:06.524 -07 000000610 INF: FPGA: 'ZDACW 37174' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 04:03:06.524 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:03:06.524 -07 000000512 INF: FPGA: Recv ZDACR 37174
17-03-18 04:03:06.534 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:06.534 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:03:06.634 -07 000000590 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:03:06.634 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 119. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1710, R2=1777, Total=3487. Warn if over 250 bubbles per interval.
17-03-18 04:03:06.684 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:06.684 -07 000000480 INF: FPGA: Recv ZSGSRD 35778
17-03-18 04:03:06.694 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:03:06.694 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:06.694 -07 000000444 INF: FPGA: Recv ZSGSRD 35785
17-03-18 04:03:06.704 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:06.704 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:06.704 -07 000000579 INF: FPGA: Recv ZSGSRD 35781
17-03-18 04:03:06.714 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:06.714 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:06.714 -07 000000590 INF: FPGA: Recv ZSGSRD 35781
17-03-18 04:03:06.724 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:06.724 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:06.724 -07 000000480 INF: FPGA: Recv ZSGSRD 35792
17-03-18 04:03:06.734 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:06.734 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:06.734 -07 000000444 INF: FPGA: Recv ZSGSRD 35781
17-03-18 04:03:06.744 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:06.744 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:06.744 -07 000000437 INF: FPGA: Recv ZSGSRD 35782
17-03-18 04:03:06.754 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:06.754 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:06.754 -07 000000561 INF: FPGA: Recv ZSGSRD 35786
17-03-18 04:03:06.764 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:06.764 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:06.764 -07 000000618 INF: FPGA: Recv ZSGSRD 35777
17-03-18 04:03:06.774 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:06.774 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:06.774 -07 000000455 INF: FPGA: Recv ZSGSRD 35788
17-03-18 04:03:06.784 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:06.784 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:03:06.784 -07 000000437 INF: FPGA: Recv ZPIEZORD 31529
17-03-18 04:03:06.794 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:06.794 -07 000000610 INF: Z Motor: Piezo is near 47.4 V (nominally 0 to 100 V), expect near 56.7 V, since DAC is at 5.672 V. Piezo Error = -9.4 V.
17-03-18 04:03:06.794 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.2 um, Read 10 ADC samples: Avg = 35783 (-169.3 uncal um), Error = 0.8 uncal um, Median = 35782 (-169.3 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 35777 (-169.3 uncal um), Max = 35792 (-169.4 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 04:03:06.794 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35783, posNoise = 9, negNoise = 6
17-03-18 04:03:06.794 -07 000000610 INF: Z Motor: After move to -0.170172, error = -0.000029, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:03:06.794 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 04:03:06.794 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:03:06.794 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:03:06.794 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:03:06.794 -07 000000012 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:03:06.794 -07 000000611 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:03:06.794 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:03:06.794 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:03:06.794 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:03:06.794 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:03:06.794 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:03:06.794 -07 000000611 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:03:06.794 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:03:06.804 -07 000000611 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 04:03:06.804 -07 000000611 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:03:06.804 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 04:03:06.804 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:03:06.814 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-18 04:03:06.814 -07 000000012 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 04:03:06.814 -07 000000611 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-18 04:03:06.814 -07 000000611 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 04:03:06.814 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 414 414 199 199 37351 150\n [Camera]
17-03-18 04:03:07.014 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:03:07.424 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 606
17-03-18 04:03:07.424 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 606
17-03-18 04:03:07.424 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:03:07.424 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:03:07.424 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) start.
17-03-18 04:03:07.434 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 606
17-03-18 04:03:07.434 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 606
17-03-18 04:03:07.434 -07 000000611 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:03:07.434 -07 000000611 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:03:07.434 -07 000000611 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) start.
17-03-18 04:03:07.624 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37351 799
17-03-18 04:03:07.774 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning grn on 949
17-03-18 04:03:07.834 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) end. Duration was 401 ms.
17-03-18 04:03:07.834 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 04:03:07.834 -07 000000444 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:03:07.834 -07 000000611 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) end. Duration was 400 ms.
17-03-18 04:03:07.834 -07 000000611 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 04:03:07.834 -07 000000611 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:03:07.834 -07 000000444 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:03:07.834 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-18 04:03:07.834 -07 000000611 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:03:07.844 -07 000000611 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-18 04:03:07.974 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1148
17-03-18 04:03:07.974 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1148
17-03-18 04:03:07.974 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:03:07.974 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1148
17-03-18 04:03:07.974 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1148
17-03-18 04:03:07.974 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:03:07.974 -07 000000611 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:03:07.974 -07 000000611 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:03:07.974 -07 000000611 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-18 04:03:07.974 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 04:03:08.164 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP 1340
17-03-18 04:03:08.164 -07 000000455 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:03:08.164 -07 000000610 INF: FPGA: 'CAMDBLSNAP 414 414 199 199 37351 150' command took 2 ms to send, 1342 ms to get response, and 1347 ms overall
17-03-18 04:03:08.164 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 04:03:08.164 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 6 at Y-position 63.2236328125, Z-Position -0.170200935079767. ------
17-03-18 04:03:08.164 -07 000000437 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:03:08.164 -07 000000012 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.0626 mm, moving Z to -0.17624 mm
17-03-18 04:03:08.164 -07 000000012 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:03:08.174 -07 000000487 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:03:08.174 -07 000000437 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 04:03:08.174 -07 000000437 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:03:08.174 -07 000000512 INF: Y Motor: Entering MoveAbsStepped (target = 102500 steps, sync = True, waitForSettling = True)
17-03-18 04:03:08.174 -07 000000512 INF: Y Motor: Moving to 64.0626 mm, started at 63.2236 mm, delta = 0.8390 mm
17-03-18 04:03:08.174 -07 000000487 INF: Z Motor: Entering MoveAbsStepped (DAC = 38500, sync = True, waitForSettling = False)
17-03-18 04:03:08.174 -07 000000487 INF: Z Motor: Moving to -0.176242 mm, started at -0.170201 mm, distance = -6.04 um
17-03-18 04:03:08.184 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:03:08.184 -07 000000590 INF: FPGA: Recv YRDPOS 129482
17-03-18 04:03:08.194 -07 000000487 INF: FPGA: Xmit ZDACW 38500\n [Z Motor]
17-03-18 04:03:08.194 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-18 04:03:08.194 -07 000000512 INF: Y Motor: Encoder = 129482 = motor step 101157.8 = 63.2236 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:03:08.194 -07 000000512 INF: Y Motor: Last commanded position = 63.2326 mm (101172.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:03:08.194 -07 000000512 INF: Y Motor: Moving 1342 steps-19
17-03-18 04:03:08.194 -07 000000561 INF: FPGA: Recv ZDACW
17-03-18 04:03:08.204 -07 000000487 INF: FPGA: 'ZDACW 38500' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-18 04:03:08.204 -07 000000487 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:03:08.204 -07 000000579 INF: FPGA: Recv ZDACR 38500
17-03-18 04:03:08.214 -07 000000512 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:03:08.214 -07 000000487 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:03:08.214 -07 000000487 INF: Z Motor: MoveAbsStepped took 38 ms (did NOT wait for settling yet))
17-03-18 04:03:08.374 -07 000000501 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:03:08.374 -07 000000437 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:03:08.384 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 406 ms.
17-03-18 04:03:08.384 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-18 04:03:08.384 -07 000000625 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:03:08.384 -07 000000611 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 406 ms.
17-03-18 04:03:08.384 -07 000000611 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 406 ms.
17-03-18 04:03:08.384 -07 000000611 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:03:08.384 -07 000000625 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:03:08.384 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 414 ms.
17-03-18 04:03:08.384 -07 000000611 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:03:08.394 -07 000000611 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 418 ms.
17-03-18 04:03:08.584 -07 000000455 INF: FPGA: Recv YMVTILE
17-03-18 04:03:08.584 -07 000000512 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 04:03:08.634 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:03:08.634 -07 000000480 INF: FPGA: Recv YRDPOS 131187
17-03-18 04:03:08.644 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 04:03:08.644 -07 000000512 INF: Y Motor: Encoder = 131187 = motor step 102489.8 = 64.0562 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:03:08.644 -07 000000512 INF: Y Motor: Position error before settling (table move) = -13 encoder counts (-0.006 mm)
17-03-18 04:03:08.644 -07 000000512 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.839 mm, average velocity = 2.113 mm/sec
17-03-18 04:03:09.324 -07 000000487 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 120, FrontChillerTemperature: 3.997626,
17-03-18 04:03:09.594 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:03:09.594 -07 000000444 INF: FPGA: Recv YRDPOS 131188
17-03-18 04:03:09.604 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:03:09.604 -07 000000512 INF: Y Motor: Encoder = 131188 = motor step 102490.6 = 64.0566 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:03:09.624 -07 000000512 INF: Y Motor: After move to 64.062607, error = -0.005966, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:03:09.624 -07 000000512 INF: Y Motor: Position error after settling (table move) = -12 encoder counts (-0.006 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 04:03:09.624 -07 000000512 INF: Y Motor: Moved to 64.0566 after 1457 ms (table move)
17-03-18 04:03:09.634 -07 000000012 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176242 mm (DAC = 38500)
17-03-18 04:03:09.634 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:09.634 -07 000000625 INF: FPGA: Recv ZSGSRD 36724
17-03-18 04:03:09.644 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 04:03:09.644 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:09.644 -07 000000487 INF: FPGA: Recv ZSGSRD 36728
17-03-18 04:03:09.654 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:09.654 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:09.654 -07 000000444 INF: FPGA: Recv ZSGSRD 36725
17-03-18 04:03:09.664 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:09.664 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:09.664 -07 000000618 INF: FPGA: Recv ZSGSRD 36725
17-03-18 04:03:09.674 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:09.674 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:09.674 -07 000000579 INF: FPGA: Recv ZSGSRD 36725
17-03-18 04:03:09.684 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:09.684 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:09.684 -07 000000590 INF: FPGA: Recv ZSGSRD 36725
17-03-18 04:03:09.694 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:09.694 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:09.694 -07 000000480 INF: FPGA: Recv ZSGSRD 36720
17-03-18 04:03:09.704 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:09.704 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:09.704 -07 000000512 INF: FPGA: Recv ZSGSRD 36722
17-03-18 04:03:09.714 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:09.714 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:09.714 -07 000000579 INF: FPGA: Recv ZSGSRD 36728
17-03-18 04:03:09.724 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:09.724 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:09.724 -07 000000625 INF: FPGA: Recv ZSGSRD 36728
17-03-18 04:03:09.734 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:09.734 -07 000000012 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:03:09.734 -07 000000444 INF: FPGA: Recv ZPIEZORD 32794
17-03-18 04:03:09.744 -07 000000012 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:09.744 -07 000000012 INF: Z Motor: Piezo is near 50.1 V (nominally 0 to 100 V), expect near 58.7 V, since DAC is at 5.875 V. Piezo Error = -8.7 V.
17-03-18 04:03:09.744 -07 000000012 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.2 um, Read 10 ADC samples: Avg = 36725 (-175.4 uncal um), Error = 0.9 uncal um, Median = 36725 (-175.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 36720 (-175.3 uncal um), Max = 36728 (-175.4 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 04:03:09.744 -07 000000012 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36725, posNoise = 3, negNoise = 5
17-03-18 04:03:09.744 -07 000000012 INF: Z Motor: After move to -0.176242, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:03:09.744 -07 000000012 INF: Z Motor: Settle wait time = 1459 ms, measure time = 109 ms (allowed 150 ms), total time = 1568 ms
17-03-18 04:03:09.744 -07 000000012 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-18 04:03:09.794 -07 000000012 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1622 ms
17-03-18 04:03:09.794 -07 000000012 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:03:09.794 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:03:09.794 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:03:09.794 -07 000000590 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:03:09.794 -07 000000487 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:03:09.794 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:03:09.794 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:03:09.804 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 04:03:09.804 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:03:09.804 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 04:03:09.804 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:03:09.814 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 04:03:09.814 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 13 ms.
17-03-18 04:03:09.814 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:03:09.854 -07 000000561 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:03:10.154 -07 000000487 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:03:10.154 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:03:10.154 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:03:10.164 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2353084232, 0x0, 559484976) start.
17-03-18 04:03:10.194 -07 000000512 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:03:10.194 -07 000000444 INF: FPGA: Recv CAMSNAP
17-03-18 04:03:10.194 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 378 ms to get response, and 384 ms overall
17-03-18 04:03:10.274 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2353084232, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 04:03:10.274 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:03:10.274 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 04:03:10.274 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 04:03:10.294 -07 000000444 INF: Autofocus start
17-03-18 04:03:10.294 -07 000000444 INF: MeasureProfile start
17-03-18 04:03:10.304 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:03:10.304 -07 000000608 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:03:10.304 -07 000000444 INF: MeasureProfile done
17-03-18 04:03:10.304 -07 000000444 INF: X=16  Z correction [um]=0.01042744
17-03-18 04:03:10.304 -07 000000444 INF: Autofocus finished
17-03-18 04:03:10.314 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-18 04:03:10.314 -07 000000512 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:03:10.514 -07 000000590 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:03:10.514 -07 000000512 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:03:10.514 -07 000000610 INF: ------------ Scan Snapping tile 6 at Y-position 64.056640625, Z-position -0.176252542917306. ----------
17-03-18 04:03:10.524 -07 000000610 INF: Cycle	120	Tile	6	Exposure Settings		A	414	G	199	T	199	C	414
17-03-18 04:03:10.524 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37015, sync = True, waitForSettling = True)
17-03-18 04:03:10.524 -07 000000610 INF: Z Motor: Moving to -0.169444 mm, started at -0.176253 mm, distance = 6.81 um
17-03-18 04:03:10.524 -07 000000610 INF: FPGA: Xmit ZDACW 37015\n [Z Motor]
17-03-18 04:03:10.524 -07 000000608 INF: FPGA: Recv ZDACW
17-03-18 04:03:10.534 -07 000000610 INF: FPGA: 'ZDACW 37015' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 04:03:10.534 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:03:10.534 -07 000000561 INF: FPGA: Recv ZDACR 37015
17-03-18 04:03:10.544 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:10.544 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:03:10.694 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:10.694 -07 000000611 INF: FPGA: Recv ZSGSRD 35664
17-03-18 04:03:10.704 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:03:10.704 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:10.704 -07 000000480 INF: FPGA: Recv ZSGSRD 35672
17-03-18 04:03:10.714 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:10.714 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:10.714 -07 000000590 INF: FPGA: Recv ZSGSRD 35663
17-03-18 04:03:10.724 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:10.724 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:10.724 -07 000000618 INF: FPGA: Recv ZSGSRD 35667
17-03-18 04:03:10.734 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:10.734 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:10.734 -07 000000487 INF: FPGA: Recv ZSGSRD 35666
17-03-18 04:03:10.744 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:10.744 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:10.744 -07 000000444 INF: FPGA: Recv ZSGSRD 35674
17-03-18 04:03:10.754 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:10.754 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:10.754 -07 000000501 INF: FPGA: Recv ZSGSRD 35673
17-03-18 04:03:10.764 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:10.764 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:10.764 -07 000000625 INF: FPGA: Recv ZSGSRD 35665
17-03-18 04:03:10.774 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:10.774 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:10.774 -07 000000487 INF: FPGA: Recv ZSGSRD 35668
17-03-18 04:03:10.784 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:10.784 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:10.784 -07 000000455 INF: FPGA: Recv ZSGSRD 35670
17-03-18 04:03:10.794 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:10.794 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:03:10.794 -07 000000512 INF: FPGA: Recv ZPIEZORD 31382
17-03-18 04:03:10.804 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:10.804 -07 000000610 INF: Z Motor: Piezo is near 47.0 V (nominally 0 to 100 V), expect near 56.5 V, since DAC is at 5.648 V. Piezo Error = -9.4 V.
17-03-18 04:03:10.804 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.4 um, Read 10 ADC samples: Avg = 35668 (-168.6 uncal um), Error = 0.9 uncal um, Median = 35668 (-168.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35663 (-168.6 uncal um), Max = 35674 (-168.6 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 04:03:10.804 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35668, posNoise = 6, negNoise = 5
17-03-18 04:03:10.804 -07 000000610 INF: Z Motor: After move to -0.169444, error = -0.000018, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:03:10.804 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 04:03:10.804 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:03:10.804 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:03:10.804 -07 000000487 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:03:10.804 -07 000000608 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:03:10.804 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:03:10.804 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:03:10.804 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:03:10.804 -07 000000579 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:03:10.804 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:03:10.804 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:03:10.804 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:03:10.804 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:03:10.814 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 04:03:10.814 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:03:10.814 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 04:03:10.814 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:03:10.824 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 04:03:10.824 -07 000000608 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 04:03:10.824 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 04:03:10.824 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 04:03:10.824 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 414 414 199 199 37192 150\n [Camera]
17-03-18 04:03:11.024 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:03:11.444 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 606
17-03-18 04:03:11.444 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 606
17-03-18 04:03:11.444 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:03:11.444 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:03:11.444 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-18 04:03:11.444 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 606
17-03-18 04:03:11.444 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 606
17-03-18 04:03:11.444 -07 000000611 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:03:11.444 -07 000000611 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:03:11.444 -07 000000611 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 04:03:11.634 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:03:11.634 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 119. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1710, R2=1777, Total=3487. Warn if over 250 bubbles per interval.
17-03-18 04:03:11.634 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37192 799
17-03-18 04:03:11.784 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP turning grn on 952
17-03-18 04:03:11.824 -07 000000611 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 377 ms.
17-03-18 04:03:11.824 -07 000000611 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-18 04:03:11.824 -07 000000611 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:03:11.834 -07 000000611 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:03:11.834 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 387 ms.
17-03-18 04:03:11.834 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-18 04:03:11.834 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:03:11.834 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:03:11.834 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-18 04:03:11.834 -07 000000611 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-18 04:03:11.984 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1148
17-03-18 04:03:11.984 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1148
17-03-18 04:03:11.984 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:03:11.994 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1148
17-03-18 04:03:11.994 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:03:11.994 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-18 04:03:11.994 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1148
17-03-18 04:03:11.994 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:03:11.994 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:03:11.994 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) start.
17-03-18 04:03:12.174 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP 1341
17-03-18 04:03:12.174 -07 000000561 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:03:12.174 -07 000000610 INF: FPGA: 'CAMDBLSNAP 414 414 199 199 37192 150' command took 2 ms to send, 1337 ms to get response, and 1347 ms overall
17-03-18 04:03:12.174 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 04:03:12.174 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 7 at Y-position 64.056640625, Z-Position -0.169462150683465. ------
17-03-18 04:03:12.184 -07 000000480 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:03:12.184 -07 000000579 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.8926 mm, moving Z to -0.17584 mm
17-03-18 04:03:12.184 -07 000000579 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:03:12.184 -07 000000444 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:03:12.184 -07 000000611 INF: Y Motor: Entering MoveAbsStepped (target = 103828 steps, sync = True, waitForSettling = True)
17-03-18 04:03:12.184 -07 000000611 INF: Y Motor: Moving to 64.8926 mm, started at 64.0566 mm, delta = 0.8360 mm
17-03-18 04:03:12.184 -07 000000455 INF: Z Motor: Entering MoveAbsStepped (DAC = 38412, sync = True, waitForSettling = False)
17-03-18 04:03:12.184 -07 000000455 INF: Z Motor: Moving to -0.175839 mm, started at -0.169462 mm, distance = -6.38 um
17-03-18 04:03:12.194 -07 000000480 INF: FPGA: 'FOCMRRCUR 80' command took 1 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 04:03:12.194 -07 000000611 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:03:12.194 -07 000000590 INF: FPGA: Recv YRDPOS 131188
17-03-18 04:03:12.204 -07 000000455 INF: FPGA: Xmit ZDACW 38412\n [Z Motor]
17-03-18 04:03:12.204 -07 000000611 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-18 04:03:12.204 -07 000000611 INF: Y Motor: Encoder = 131188 = motor step 102490.6 = 64.0566 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:03:12.204 -07 000000611 INF: Y Motor: Last commanded position = 64.0626 mm (102500.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:03:12.204 -07 000000611 INF: Y Motor: Moving 1338 steps-13
17-03-18 04:03:12.204 -07 000000625 INF: FPGA: Recv ZDACW
17-03-18 04:03:12.214 -07 000000480 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:03:12.214 -07 000000455 INF: FPGA: 'ZDACW 38412' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-18 04:03:12.224 -07 000000611 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:03:12.234 -07 000000455 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:03:12.234 -07 000000444 INF: FPGA: Recv ZDACR 38412
17-03-18 04:03:12.244 -07 000000455 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 04:03:12.244 -07 000000455 INF: Z Motor: MoveAbsStepped took 52 ms (did NOT wait for settling yet))
17-03-18 04:03:12.394 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 403 ms.
17-03-18 04:03:12.394 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 04:03:12.394 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:03:12.394 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) end. Duration was 402 ms.
17-03-18 04:03:12.394 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-18 04:03:12.394 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:03:12.394 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:03:12.394 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 410 ms.
17-03-18 04:03:12.394 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:03:12.404 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-18 04:03:12.414 -07 000000512 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:03:12.414 -07 000000480 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 04:03:12.594 -07 000000437 INF: FPGA: Recv YMVTILE
17-03-18 04:03:12.594 -07 000000611 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 04:03:12.644 -07 000000611 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:03:12.644 -07 000000501 INF: FPGA: Recv YRDPOS 132870
17-03-18 04:03:12.654 -07 000000611 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 04:03:12.654 -07 000000611 INF: Y Motor: Encoder = 132870 = motor step 103804.7 = 64.8779 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:03:12.654 -07 000000611 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-18 04:03:12.654 -07 000000611 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.836 mm, average velocity = 2.106 mm/sec
17-03-18 04:03:13.604 -07 000000611 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:03:13.604 -07 000000480 INF: FPGA: Recv YRDPOS 132871
17-03-18 04:03:13.614 -07 000000611 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:13.614 -07 000000611 INF: Y Motor: Encoder = 132871 = motor step 103805.5 = 64.8784 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:03:13.644 -07 000000611 INF: Y Motor: After move to 64.892609, error = -0.014191, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:03:13.644 -07 000000611 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 04:03:13.644 -07 000000611 INF: Y Motor: Moved to 64.8784 after 1453 ms (table move)
17-03-18 04:03:13.644 -07 000000579 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175839 mm (DAC = 38412)
17-03-18 04:03:13.644 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:13.644 -07 000000611 INF: FPGA: Recv ZSGSRD 36662
17-03-18 04:03:13.654 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 04:03:13.654 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:13.654 -07 000000455 INF: FPGA: Recv ZSGSRD 36660
17-03-18 04:03:13.664 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:13.664 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:13.664 -07 000000625 INF: FPGA: Recv ZSGSRD 36660
17-03-18 04:03:13.674 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:13.674 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:13.674 -07 000000501 INF: FPGA: Recv ZSGSRD 36664
17-03-18 04:03:13.684 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:13.684 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:13.684 -07 000000444 INF: FPGA: Recv ZSGSRD 36665
17-03-18 04:03:13.694 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:13.694 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:13.694 -07 000000618 INF: FPGA: Recv ZSGSRD 36661
17-03-18 04:03:13.704 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:13.704 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:13.704 -07 000000487 INF: FPGA: Recv ZSGSRD 36664
17-03-18 04:03:13.714 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:13.714 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:13.714 -07 000000501 INF: FPGA: Recv ZSGSRD 36658
17-03-18 04:03:13.724 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:13.724 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:13.724 -07 000000561 INF: FPGA: Recv ZSGSRD 36657
17-03-18 04:03:13.734 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:13.734 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:13.734 -07 000000611 INF: FPGA: Recv ZSGSRD 36662
17-03-18 04:03:13.744 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:13.744 -07 000000579 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:03:13.744 -07 000000487 INF: FPGA: Recv ZPIEZORD 32702
17-03-18 04:03:13.754 -07 000000579 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:13.754 -07 000000579 INF: Z Motor: Piezo is near 49.9 V (nominally 0 to 100 V), expect near 58.6 V, since DAC is at 5.861 V. Piezo Error = -8.8 V.
17-03-18 04:03:13.754 -07 000000579 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.8 um, Read 10 ADC samples: Avg = 36661 (-175.0 uncal um), Error = 0.9 uncal um, Median = 36662 (-175.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 36657 (-174.9 uncal um), Max = 36665 (-175.0 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 04:03:13.754 -07 000000579 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36661, posNoise = 4, negNoise = 4
17-03-18 04:03:13.754 -07 000000579 INF: Z Motor: After move to -0.175839, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:03:13.754 -07 000000579 INF: Z Motor: Settle wait time = 1458 ms, measure time = 104 ms (allowed 150 ms), total time = 1562 ms
17-03-18 04:03:13.754 -07 000000579 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-18 04:03:13.804 -07 000000579 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1615 ms
17-03-18 04:03:13.804 -07 000000579 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:03:13.804 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:03:13.804 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:03:13.804 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:03:13.804 -07 000000608 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:03:13.804 -07 000000561 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:03:13.804 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:03:13.804 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 04:03:13.804 -07 000000561 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:03:13.814 -07 000000561 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 04:03:13.814 -07 000000561 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:03:13.814 -07 000000561 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 04:03:13.814 -07 000000561 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 04:03:13.824 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:03:13.864 -07 000000611 INF: FPGA: Recv @CAMSNAP turning led on 43
17-03-18 04:03:14.164 -07 000000444 INF: FPGA: Recv @CAMSNAP img rdy 343
17-03-18 04:03:14.164 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 343
17-03-18 04:03:14.164 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:03:14.164 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 675221432, 0x0, 559484976) start.
17-03-18 04:03:14.204 -07 000000455 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:03:14.204 -07 000000625 INF: FPGA: Recv CAMSNAP
17-03-18 04:03:14.204 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 375 ms to get response, and 384 ms overall
17-03-18 04:03:14.284 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 675221432, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 04:03:14.284 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:03:14.284 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 04:03:14.284 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 04:03:14.304 -07 000000608 INF: Autofocus start
17-03-18 04:03:14.304 -07 000000608 INF: MeasureProfile start
17-03-18 04:03:14.304 -07 000000611 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:03:14.304 -07 000000561 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:03:14.314 -07 000000611 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 04:03:14.314 -07 000000611 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:03:14.314 -07 000000608 INF: MeasureProfile done
17-03-18 04:03:14.314 -07 000000608 INF: X=16  Z correction [um]=0.01042744
17-03-18 04:03:14.314 -07 000000608 INF: Autofocus finished
17-03-18 04:03:14.514 -07 000000608 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:03:14.514 -07 000000611 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:03:14.524 -07 000000610 INF: ------------ Scan Snapping tile 7 at Y-position 64.87841796875, Z-position -0.175841393340233. ----------
17-03-18 04:03:14.524 -07 000000610 INF: Cycle	120	Tile	7	Exposure Settings		A	414	G	199	T	199	C	414
17-03-18 04:03:14.524 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36927, sync = True, waitForSettling = True)
17-03-18 04:03:14.524 -07 000000610 INF: Z Motor: Moving to -0.169041 mm, started at -0.175841 mm, distance = 6.80 um
17-03-18 04:03:14.524 -07 000000610 INF: FPGA: Xmit ZDACW 36927\n [Z Motor]
17-03-18 04:03:14.524 -07 000000561 INF: FPGA: Recv ZDACW
17-03-18 04:03:14.534 -07 000000610 INF: FPGA: 'ZDACW 36927' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:03:14.534 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:03:14.534 -07 000000590 INF: FPGA: Recv ZDACR 36927
17-03-18 04:03:14.544 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:14.544 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:03:14.684 -07 000000625 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 120, FrontChillerTemperature: 4.03576,
17-03-18 04:03:14.694 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:14.694 -07 000000444 INF: FPGA: Recv ZSGSRD 35610
17-03-18 04:03:14.704 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:03:14.704 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:14.704 -07 000000455 INF: FPGA: Recv ZSGSRD 35607
17-03-18 04:03:14.714 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:14.724 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:14.724 -07 000000012 INF: FPGA: Recv ZSGSRD 35601
17-03-18 04:03:14.734 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 04:03:14.734 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:14.734 -07 000000618 INF: FPGA: Recv ZSGSRD 35605
17-03-18 04:03:14.744 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:14.764 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:14.764 -07 000000625 INF: FPGA: Recv ZSGSRD 35605
17-03-18 04:03:14.774 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 04:03:14.774 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:14.774 -07 000000437 INF: FPGA: Recv ZSGSRD 35604
17-03-18 04:03:14.784 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:14.784 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:14.784 -07 000000608 INF: FPGA: Recv ZSGSRD 35611
17-03-18 04:03:14.794 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:14.794 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:14.794 -07 000000012 INF: FPGA: Recv ZSGSRD 35601
17-03-18 04:03:14.804 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:14.804 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:14.804 -07 000000618 INF: FPGA: Recv ZSGSRD 35605
17-03-18 04:03:14.814 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:14.814 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:14.814 -07 000000561 INF: FPGA: Recv ZSGSRD 35608
17-03-18 04:03:14.824 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:14.824 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:03:14.824 -07 000000590 INF: FPGA: Recv ZPIEZORD 31298
17-03-18 04:03:14.834 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:14.834 -07 000000610 INF: Z Motor: Piezo is near 46.9 V (nominally 0 to 100 V), expect near 56.3 V, since DAC is at 5.635 V. Piezo Error = -9.5 V.
17-03-18 04:03:14.834 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.0 um, Read 10 ADC samples: Avg = 35606 (-168.2 uncal um), Error = 0.8 uncal um, Median = 35605 (-168.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35601 (-168.2 uncal um), Max = 35611 (-168.2 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 04:03:14.834 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35606, posNoise = 5, negNoise = 5
17-03-18 04:03:14.834 -07 000000610 INF: Z Motor: After move to -0.169041, error = -0.000023, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:03:14.834 -07 000000610 INF: Z Motor: MoveAbsStepped took 310 ms)
17-03-18 04:03:14.834 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:03:14.834 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:03:14.834 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:03:14.834 -07 000000611 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:03:14.834 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:03:14.834 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:03:14.834 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:03:14.834 -07 000000579 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:03:14.844 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:03:14.844 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:03:14.844 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:03:14.844 -07 000000611 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:03:14.844 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-18 04:03:14.844 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:03:14.844 -07 000000611 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-18 04:03:14.844 -07 000000611 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:03:14.864 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 04:03:14.864 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 04:03:14.864 -07 000000611 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 04:03:14.864 -07 000000611 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 04:03:14.864 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 414 414 199 199 37103 150\n [Camera]
17-03-18 04:03:15.064 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:03:15.474 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 606
17-03-18 04:03:15.474 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 606
17-03-18 04:03:15.474 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:03:15.474 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:03:15.474 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 2684358704, 0x0, 391868352) start.
17-03-18 04:03:15.484 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 606
17-03-18 04:03:15.484 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 606
17-03-18 04:03:15.484 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:03:15.484 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:03:15.484 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2719780968, 0x0, 418435064) start.
17-03-18 04:03:15.674 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37103 800
17-03-18 04:03:15.824 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP turning grn on 949
17-03-18 04:03:15.864 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2719780968, 0x0, 418435064) end. Duration was 387 ms.
17-03-18 04:03:15.864 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-18 04:03:15.874 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:03:15.874 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 2684358704, 0x0, 391868352) end. Duration was 390 ms.
17-03-18 04:03:15.874 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-18 04:03:15.874 -07 000000444 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:03:15.874 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:03:15.874 -07 000000444 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:03:15.874 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 04:03:15.884 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 04:03:16.024 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1148
17-03-18 04:03:16.024 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1148
17-03-18 04:03:16.024 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:03:16.024 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:03:16.024 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 2755203232, 0x0, 391868352) start.
17-03-18 04:03:16.024 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1148
17-03-18 04:03:16.024 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1148
17-03-18 04:03:16.024 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:03:16.154 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:03:16.154 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) start.
17-03-18 04:03:16.214 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP 1340
17-03-18 04:03:16.214 -07 000000480 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:03:16.214 -07 000000610 INF: FPGA: 'CAMDBLSNAP 414 414 199 199 37103 150' command took 2 ms to send, 1342 ms to get response, and 1348 ms overall
17-03-18 04:03:16.214 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 04:03:16.214 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 8 at Y-position 64.87841796875, Z-Position -0.169063849530676. ------
17-03-18 04:03:16.214 -07 000000611 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:03:16.214 -07 000000512 INF: Y Motor: MoveYZ optimized starting. Moving Y to 65.7226 mm, moving Z to -0.17567 mm
17-03-18 04:03:16.214 -07 000000512 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:03:16.224 -07 000000590 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:03:16.224 -07 000000611 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 04:03:16.224 -07 000000012 INF: Y Motor: Entering MoveAbsStepped (target = 105156 steps, sync = True, waitForSettling = True)
17-03-18 04:03:16.224 -07 000000012 INF: Y Motor: Moving to 65.7226 mm, started at 64.8784 mm, delta = 0.8442 mm
17-03-18 04:03:16.224 -07 000000611 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:03:16.224 -07 000000444 INF: Z Motor: Entering MoveAbsStepped (DAC = 38374, sync = True, waitForSettling = False)
17-03-18 04:03:16.224 -07 000000444 INF: Z Motor: Moving to -0.175665 mm, started at -0.169064 mm, distance = -6.60 um
17-03-18 04:03:16.234 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:03:16.234 -07 000000608 INF: FPGA: Recv YRDPOS 132871
17-03-18 04:03:16.244 -07 000000444 INF: FPGA: Xmit ZDACW 38374\n [Z Motor]
17-03-18 04:03:16.244 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-18 04:03:16.244 -07 000000012 INF: Y Motor: Encoder = 132871 = motor step 103805.5 = 64.8784 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:03:16.244 -07 000000012 INF: Y Motor: Last commanded position = 64.8926 mm (103828.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:03:16.244 -07 000000012 INF: Y Motor: Moving 1351 steps-30
17-03-18 04:03:16.244 -07 000000480 INF: FPGA: Recv ZDACW
17-03-18 04:03:16.254 -07 000000444 INF: FPGA: 'ZDACW 38374' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-18 04:03:16.254 -07 000000012 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:03:16.264 -07 000000444 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:03:16.264 -07 000000561 INF: FPGA: Recv ZDACR 38374
17-03-18 04:03:16.274 -07 000000444 INF: FPGA: 'ZDACR' command took 2 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 04:03:16.274 -07 000000444 INF: Z Motor: MoveAbsStepped took 48 ms (did NOT wait for settling yet))
17-03-18 04:03:16.424 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 2755203232, 0x0, 391868352) end. Duration was 400 ms.
17-03-18 04:03:16.424 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 04:03:16.424 -07 000000625 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:03:16.424 -07 000000487 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:03:16.424 -07 000000611 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 194 ms to get response, and 203 ms overall
17-03-18 04:03:16.424 -07 000000625 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 04:03:16.424 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-18 04:03:16.544 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) end. Duration was 394 ms.
17-03-18 04:03:16.544 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-18 04:03:16.544 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:03:16.554 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:03:16.554 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 534 ms.
17-03-18 04:03:16.624 -07 000000608 INF: FPGA: Recv YMVTILE
17-03-18 04:03:16.624 -07 000000012 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-18 04:03:16.634 -07 000000611 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:03:16.634 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 119. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1710, R2=1777, Total=3487. Warn if over 250 bubbles per interval.
17-03-18 04:03:16.674 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:03:16.674 -07 000000561 INF: FPGA: Recv YRDPOS 134581
17-03-18 04:03:16.684 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 04:03:16.684 -07 000000012 INF: Y Motor: Encoder = 134581 = motor step 105141.4 = 65.7134 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:03:16.684 -07 000000012 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm)
17-03-18 04:03:16.684 -07 000000012 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 387 ms, distance = 0.844 mm, average velocity = 2.181 mm/sec
17-03-18 04:03:17.634 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:03:17.634 -07 000000437 INF: FPGA: Recv YRDPOS 134581
17-03-18 04:03:17.644 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:03:17.644 -07 000000012 INF: Y Motor: Encoder = 134581 = motor step 105141.4 = 65.7134 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:03:17.674 -07 000000012 INF: Y Motor: After move to 65.722610, error = -0.009232, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:03:17.674 -07 000000012 INF: Y Motor: Position error after settling (table move) = -19 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:03:17.674 -07 000000012 INF: Y Motor: Moved to 65.7134 after 1455 ms (table move)
17-03-18 04:03:17.684 -07 000000512 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175665 mm (DAC = 38374)
17-03-18 04:03:17.684 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:17.684 -07 000000501 INF: FPGA: Recv ZSGSRD 36632
17-03-18 04:03:17.694 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 04:03:17.694 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:17.694 -07 000000437 INF: FPGA: Recv ZSGSRD 36644
17-03-18 04:03:17.704 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:17.704 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:17.704 -07 000000480 INF: FPGA: Recv ZSGSRD 36635
17-03-18 04:03:17.714 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:17.714 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:17.714 -07 000000444 INF: FPGA: Recv ZSGSRD 36627
17-03-18 04:03:17.724 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:17.724 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:17.724 -07 000000501 INF: FPGA: Recv ZSGSRD 36637
17-03-18 04:03:17.734 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:17.734 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:17.734 -07 000000455 INF: FPGA: Recv ZSGSRD 36636
17-03-18 04:03:17.744 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:17.744 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:17.744 -07 000000618 INF: FPGA: Recv ZSGSRD 36636
17-03-18 04:03:17.754 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:17.754 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:17.754 -07 000000608 INF: FPGA: Recv ZSGSRD 36632
17-03-18 04:03:17.764 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:17.764 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:17.764 -07 000000590 INF: FPGA: Recv ZSGSRD 36636
17-03-18 04:03:17.774 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:17.774 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:17.774 -07 000000012 INF: FPGA: Recv ZSGSRD 36644
17-03-18 04:03:17.784 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:17.784 -07 000000512 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:03:17.784 -07 000000480 INF: FPGA: Recv ZPIEZORD 32712
17-03-18 04:03:17.794 -07 000000512 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:17.794 -07 000000512 INF: Z Motor: Piezo is near 49.9 V (nominally 0 to 100 V), expect near 58.6 V, since DAC is at 5.855 V. Piezo Error = -8.7 V.
17-03-18 04:03:17.794 -07 000000512 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.7 um, Read 10 ADC samples: Avg = 36636 (-174.8 uncal um), Error = 0.9 uncal um, Median = 36636 (-174.8 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 36627 (-174.7 uncal um), Max = 36644 (-174.8 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-18 04:03:17.794 -07 000000512 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36636, posNoise = 8, negNoise = 9
17-03-18 04:03:17.794 -07 000000512 INF: Z Motor: After move to -0.175665, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:03:17.794 -07 000000512 INF: Z Motor: Settle wait time = 1459 ms, measure time = 109 ms (allowed 150 ms), total time = 1568 ms
17-03-18 04:03:17.794 -07 000000512 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-18 04:03:17.844 -07 000000512 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1622 ms
17-03-18 04:03:17.844 -07 000000512 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:03:17.844 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:03:17.844 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:03:17.844 -07 000000455 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:03:17.844 -07 000000579 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:03:17.844 -07 000000561 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:03:17.844 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:03:17.844 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:03:17.844 -07 000000561 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:03:17.854 -07 000000561 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 04:03:17.854 -07 000000561 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:03:17.854 -07 000000561 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 04:03:17.854 -07 000000561 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 04:03:17.864 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:03:17.904 -07 000000611 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:03:18.204 -07 000000455 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:03:18.204 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:03:18.204 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:03:18.204 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 610341080, 0x0, 559484976) start.
17-03-18 04:03:18.244 -07 000000590 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:03:18.244 -07 000000608 INF: FPGA: Recv CAMSNAP
17-03-18 04:03:18.244 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 04:03:18.324 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 610341080, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 04:03:18.324 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:03:18.324 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 04:03:18.324 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 04:03:18.344 -07 000000487 INF: Autofocus start
17-03-18 04:03:18.344 -07 000000487 INF: MeasureProfile start
17-03-18 04:03:18.344 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:03:18.344 -07 000000437 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:03:18.354 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 04:03:18.354 -07 000000512 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:03:18.354 -07 000000487 INF: MeasureProfile done
17-03-18 04:03:18.354 -07 000000487 INF: X=16  Z correction [um]=0.01042744
17-03-18 04:03:18.354 -07 000000487 INF: Autofocus finished
17-03-18 04:03:18.554 -07 000000455 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:03:18.554 -07 000000512 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:03:18.554 -07 000000610 INF: ------------ Scan Snapping tile 8 at Y-position 65.71337890625, Z-position -0.175680788036689. ----------
17-03-18 04:03:18.554 -07 000000610 INF: Cycle	120	Tile	8	Exposure Settings		A	414	G	199	T	199	C	414
17-03-18 04:03:18.564 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36889, sync = True, waitForSettling = True)
17-03-18 04:03:18.564 -07 000000610 INF: Z Motor: Moving to -0.168867 mm, started at -0.175681 mm, distance = 6.81 um
17-03-18 04:03:18.564 -07 000000610 INF: FPGA: Xmit ZDACW 36889\n [Z Motor]
17-03-18 04:03:18.564 -07 000000455 INF: FPGA: Recv ZDACW
17-03-18 04:03:18.574 -07 000000610 INF: FPGA: 'ZDACW 36889' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 04:03:18.574 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:03:18.574 -07 000000608 INF: FPGA: Recv ZDACR 36889
17-03-18 04:03:18.584 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:18.584 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:03:18.734 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:18.734 -07 000000625 INF: FPGA: Recv ZSGSRD 35577
17-03-18 04:03:18.744 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:03:18.744 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:18.744 -07 000000012 INF: FPGA: Recv ZSGSRD 35576
17-03-18 04:03:18.754 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:18.754 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:18.754 -07 000000512 INF: FPGA: Recv ZSGSRD 35577
17-03-18 04:03:18.764 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:18.764 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:18.764 -07 000000437 INF: FPGA: Recv ZSGSRD 35569
17-03-18 04:03:18.774 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:18.774 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:18.774 -07 000000590 INF: FPGA: Recv ZSGSRD 35580
17-03-18 04:03:18.784 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:18.784 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:18.784 -07 000000579 INF: FPGA: Recv ZSGSRD 35576
17-03-18 04:03:18.794 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:18.794 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:18.794 -07 000000444 INF: FPGA: Recv ZSGSRD 35581
17-03-18 04:03:18.804 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:18.804 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:18.804 -07 000000618 INF: FPGA: Recv ZSGSRD 35577
17-03-18 04:03:18.814 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:18.814 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:18.814 -07 000000608 INF: FPGA: Recv ZSGSRD 35572
17-03-18 04:03:18.824 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:18.824 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:18.824 -07 000000480 INF: FPGA: Recv ZSGSRD 35580
17-03-18 04:03:18.834 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:18.834 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:03:18.834 -07 000000444 INF: FPGA: Recv ZPIEZORD 31295
17-03-18 04:03:18.844 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:18.844 -07 000000610 INF: Z Motor: Piezo is near 46.9 V (nominally 0 to 100 V), expect near 56.3 V, since DAC is at 5.629 V. Piezo Error = -9.4 V.
17-03-18 04:03:18.844 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.9 um, Read 10 ADC samples: Avg = 35576 (-168.0 uncal um), Error = 0.9 uncal um, Median = 35577 (-168.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35569 (-168.0 uncal um), Max = 35581 (-168.0 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 04:03:18.844 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35576, posNoise = 5, negNoise = 7
17-03-18 04:03:18.844 -07 000000610 INF: Z Motor: After move to -0.168867, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:03:18.844 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 04:03:18.844 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:03:18.844 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:03:18.844 -07 000000455 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:03:18.844 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:03:18.844 -07 000000579 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:03:18.844 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:03:18.844 -07 000000012 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:03:18.844 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:03:18.844 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:03:18.844 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:03:18.844 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:03:18.854 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:03:18.854 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 04:03:18.854 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:03:18.854 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 04:03:18.854 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:03:18.864 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 14 ms.
17-03-18 04:03:18.864 -07 000000579 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 19 ms.
17-03-18 04:03:18.864 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms.
17-03-18 04:03:18.864 -07 000000012 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 19 ms.
17-03-18 04:03:18.864 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 414 414 199 199 37066 150\n [Camera]
17-03-18 04:03:19.074 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP turning red on 195
17-03-18 04:03:19.484 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 606
17-03-18 04:03:19.484 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 606
17-03-18 04:03:19.484 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:03:19.484 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:03:19.484 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-18 04:03:19.484 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 606
17-03-18 04:03:19.484 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 606
17-03-18 04:03:19.494 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:03:19.494 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:03:19.494 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) start.
17-03-18 04:03:19.674 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37066 799
17-03-18 04:03:19.824 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP turning grn on 949
17-03-18 04:03:19.884 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 394 ms.
17-03-18 04:03:19.884 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 04:03:19.884 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:03:19.884 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:03:19.884 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 04:03:19.884 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) end. Duration was 393 ms.
17-03-18 04:03:19.884 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-18 04:03:19.884 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:03:19.894 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:03:19.894 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 408 ms.
17-03-18 04:03:20.024 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1148
17-03-18 04:03:20.024 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1148
17-03-18 04:03:20.024 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:03:20.024 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1148
17-03-18 04:03:20.024 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1148
17-03-18 04:03:20.144 -07 000000444 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:03:20.144 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:03:20.144 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-18 04:03:20.144 -07 000000444 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:03:20.144 -07 000000444 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-18 04:03:20.154 -07 000000012 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 120, FrontChillerTemperature: 4.030322,
17-03-18 04:03:20.214 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP 1341
17-03-18 04:03:20.214 -07 000000012 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:03:20.214 -07 000000610 INF: FPGA: 'CAMDBLSNAP 414 414 199 199 37066 150' command took 2 ms to send, 1337 ms to get response, and 1348 ms overall
17-03-18 04:03:20.214 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 04:03:20.214 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 9 at Y-position 65.71337890625, Z-Position -0.168871123166423. ------
17-03-18 04:03:20.224 -07 000000437 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:03:20.224 -07 000000590 INF: Y Motor: MoveYZ optimized starting. Moving Y to 66.5526 mm, moving Z to -0.17528 mm
17-03-18 04:03:20.224 -07 000000590 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:03:20.224 -07 000000608 INF: Y Motor: Entering MoveAbsStepped (target = 106484 steps, sync = True, waitForSettling = True)
17-03-18 04:03:20.224 -07 000000608 INF: Y Motor: Moving to 66.5526 mm, started at 65.7134 mm, delta = 0.8392 mm
17-03-18 04:03:20.224 -07 000000561 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:03:20.224 -07 000000455 INF: Z Motor: Entering MoveAbsStepped (DAC = 38290, sync = True, waitForSettling = False)
17-03-18 04:03:20.224 -07 000000455 INF: Z Motor: Moving to -0.175280 mm, started at -0.168871 mm, distance = -6.41 um
17-03-18 04:03:20.234 -07 000000437 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:03:20.234 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:03:20.234 -07 000000012 INF: FPGA: Recv YRDPOS 134581
17-03-18 04:03:20.244 -07 000000455 INF: FPGA: Xmit ZDACW 38290\n [Z Motor]
17-03-18 04:03:20.244 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-18 04:03:20.244 -07 000000608 INF: Y Motor: Encoder = 134581 = motor step 105141.4 = 65.7134 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:03:20.244 -07 000000480 INF: FPGA: Recv ZDACW
17-03-18 04:03:20.244 -07 000000608 INF: Y Motor: Last commanded position = 65.7226 mm (105156.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:03:20.244 -07 000000608 INF: Y Motor: Moving 1343 steps-19
17-03-18 04:03:20.254 -07 000000437 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:03:20.254 -07 000000455 INF: FPGA: 'ZDACW 38290' command took 2 ms to send, 0 ms to get response, and 23 ms overall
17-03-18 04:03:20.264 -07 000000608 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:03:20.274 -07 000000455 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:03:20.274 -07 000000512 INF: FPGA: Recv ZDACR 38290
17-03-18 04:03:20.284 -07 000000455 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 04:03:20.284 -07 000000455 INF: Z Motor: MoveAbsStepped took 53 ms (did NOT wait for settling yet))
17-03-18 04:03:20.454 -07 000000579 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:03:20.454 -07 000000437 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 04:03:20.544 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 394 ms.
17-03-18 04:03:20.544 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 04:03:20.544 -07 000000625 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:03:20.544 -07 000000444 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 394 ms.
17-03-18 04:03:20.544 -07 000000444 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-18 04:03:20.544 -07 000000444 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:03:20.544 -07 000000625 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:03:20.544 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 520 ms.
17-03-18 04:03:20.544 -07 000000444 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:03:20.554 -07 000000444 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 524 ms.
17-03-18 04:03:20.634 -07 000000618 INF: FPGA: Recv YMVTILE
17-03-18 04:03:20.634 -07 000000608 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 395 ms overall
17-03-18 04:03:20.684 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:03:20.694 -07 000000579 INF: FPGA: Recv YRDPOS 136270
17-03-18 04:03:20.694 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 04:03:20.694 -07 000000608 INF: Y Motor: Encoder = 136270 = motor step 106460.9 = 66.5381 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:03:20.694 -07 000000608 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-18 04:03:20.694 -07 000000608 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 395 ms, distance = 0.839 mm, average velocity = 2.125 mm/sec
17-03-18 04:03:21.634 -07 000000012 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:03:21.634 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 119. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1710, R2=1777, Total=3487. Warn if over 250 bubbles per interval.
17-03-18 04:03:21.644 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:03:21.644 -07 000000579 INF: FPGA: Recv YRDPOS 136270
17-03-18 04:03:21.654 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:03:21.654 -07 000000608 INF: Y Motor: Encoder = 136270 = motor step 106460.9 = 66.5381 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:03:21.684 -07 000000608 INF: Y Motor: After move to 66.552605, error = -0.014519, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:03:21.684 -07 000000608 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:03:21.684 -07 000000608 INF: Y Motor: Moved to 66.5381 after 1455 ms (table move)
17-03-18 04:03:21.684 -07 000000590 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175280 mm (DAC = 38290)
17-03-18 04:03:21.684 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:21.684 -07 000000487 INF: FPGA: Recv ZSGSRD 36572
17-03-18 04:03:21.694 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 04:03:21.694 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:21.694 -07 000000625 INF: FPGA: Recv ZSGSRD 36579
17-03-18 04:03:21.704 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:21.704 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:21.704 -07 000000012 INF: FPGA: Recv ZSGSRD 36573
17-03-18 04:03:21.714 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:21.714 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:21.714 -07 000000611 INF: FPGA: Recv ZSGSRD 36580
17-03-18 04:03:21.724 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:21.724 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:21.724 -07 000000480 INF: FPGA: Recv ZSGSRD 36587
17-03-18 04:03:21.734 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:21.734 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:21.734 -07 000000512 INF: FPGA: Recv ZSGSRD 36576
17-03-18 04:03:21.744 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:21.744 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:21.744 -07 000000561 INF: FPGA: Recv ZSGSRD 36565
17-03-18 04:03:21.754 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:21.754 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:21.754 -07 000000012 INF: FPGA: Recv ZSGSRD 36571
17-03-18 04:03:21.764 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:21.764 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:21.764 -07 000000611 INF: FPGA: Recv ZSGSRD 36577
17-03-18 04:03:21.774 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:21.774 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:21.774 -07 000000618 INF: FPGA: Recv ZSGSRD 36575
17-03-18 04:03:21.784 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:21.784 -07 000000590 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:03:21.784 -07 000000561 INF: FPGA: Recv ZPIEZORD 32631
17-03-18 04:03:21.794 -07 000000590 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:21.794 -07 000000590 INF: Z Motor: Piezo is near 49.7 V (nominally 0 to 100 V), expect near 58.4 V, since DAC is at 5.843 V. Piezo Error = -8.7 V.
17-03-18 04:03:21.794 -07 000000590 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.3 um, Read 10 ADC samples: Avg = 36576 (-174.4 uncal um), Error = 0.9 uncal um, Median = 36576 (-174.4 uncal um), StdDev = 6 (0.0 uncal um), Range = 22 (0.1 uncal um), Min = 36565 (-174.3 uncal um), Max = 36587 (-174.5 uncal um), Pos Noise = 11 (0.1 uncal um), Neg Noise = 11 (0.1 uncal um)
17-03-18 04:03:21.794 -07 000000590 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36576, posNoise = 11, negNoise = 11
17-03-18 04:03:21.794 -07 000000590 INF: Z Motor: After move to -0.175280, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:03:21.794 -07 000000590 INF: Z Motor: Settle wait time = 1459 ms, measure time = 105 ms (allowed 150 ms), total time = 1564 ms
17-03-18 04:03:21.794 -07 000000590 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 04:03:21.844 -07 000000590 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1616 ms
17-03-18 04:03:21.844 -07 000000590 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:03:21.844 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:03:21.844 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:03:21.844 -07 000000444 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:03:21.844 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:03:21.844 -07 000000611 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:03:21.844 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:03:21.844 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:03:21.844 -07 000000611 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:03:21.854 -07 000000611 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms.
17-03-18 04:03:21.854 -07 000000611 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:03:21.864 -07 000000611 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 04:03:21.864 -07 000000611 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 13 ms.
17-03-18 04:03:21.864 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:03:21.914 -07 000000501 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:03:22.214 -07 000000512 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:03:22.214 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:03:22.214 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:03:22.214 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2317127784, 0x0, 559484976) start.
17-03-18 04:03:22.254 -07 000000437 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:03:22.254 -07 000000480 INF: FPGA: Recv CAMSNAP
17-03-18 04:03:22.254 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 382 ms to get response, and 388 ms overall
17-03-18 04:03:22.324 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2317127784, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 04:03:22.334 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:03:22.334 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 04:03:22.334 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 04:03:22.354 -07 000000487 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:03:22.354 -07 000000561 INF: Autofocus start
17-03-18 04:03:22.354 -07 000000561 INF: MeasureProfile start
17-03-18 04:03:22.354 -07 000000579 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:03:22.364 -07 000000487 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 04:03:22.364 -07 000000487 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:03:22.374 -07 000000561 INF: MeasureProfile done
17-03-18 04:03:22.374 -07 000000561 INF: X=32  Z correction [um]=0.09220707
17-03-18 04:03:22.374 -07 000000561 INF: Autofocus finished
17-03-18 04:03:22.564 -07 000000618 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:03:22.564 -07 000000487 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:03:22.564 -07 000000610 INF: ------------ Scan Snapping tile 9 at Y-position 66.5380859375, Z-position -0.175295335308184. ----------
17-03-18 04:03:22.564 -07 000000610 INF: Cycle	120	Tile	9	Exposure Settings		A	414	G	199	T	199	C	414
17-03-18 04:03:22.574 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36823, sync = True, waitForSettling = True)
17-03-18 04:03:22.574 -07 000000610 INF: Z Motor: Moving to -0.168565 mm, started at -0.175295 mm, distance = 6.73 um
17-03-18 04:03:22.574 -07 000000610 INF: FPGA: Xmit ZDACW 36823\n [Z Motor]
17-03-18 04:03:22.574 -07 000000618 INF: FPGA: Recv ZDACW
17-03-18 04:03:22.584 -07 000000610 INF: FPGA: 'ZDACW 36823' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 04:03:22.584 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:03:22.584 -07 000000625 INF: FPGA: Recv ZDACR 36823
17-03-18 04:03:22.594 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:22.594 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:03:22.744 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:22.744 -07 000000012 INF: FPGA: Recv ZSGSRD 35530
17-03-18 04:03:22.754 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:03:22.754 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:22.754 -07 000000444 INF: FPGA: Recv ZSGSRD 35531
17-03-18 04:03:22.764 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:22.764 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:22.764 -07 000000618 INF: FPGA: Recv ZSGSRD 35527
17-03-18 04:03:22.774 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:22.774 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:22.774 -07 000000625 INF: FPGA: Recv ZSGSRD 35529
17-03-18 04:03:22.784 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:22.784 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:22.784 -07 000000608 INF: FPGA: Recv ZSGSRD 35532
17-03-18 04:03:22.794 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:22.794 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:22.794 -07 000000012 INF: FPGA: Recv ZSGSRD 35536
17-03-18 04:03:22.804 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:22.804 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:22.804 -07 000000618 INF: FPGA: Recv ZSGSRD 35532
17-03-18 04:03:22.814 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:22.814 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:22.814 -07 000000437 INF: FPGA: Recv ZSGSRD 35536
17-03-18 04:03:22.824 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:22.824 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:22.824 -07 000000611 INF: FPGA: Recv ZSGSRD 35535
17-03-18 04:03:22.834 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:22.834 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:22.834 -07 000000444 INF: FPGA: Recv ZSGSRD 35528
17-03-18 04:03:22.844 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:22.844 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:03:22.844 -07 000000012 INF: FPGA: Recv ZPIEZORD 31194
17-03-18 04:03:22.854 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:22.854 -07 000000610 INF: Z Motor: Piezo is near 46.6 V (nominally 0 to 100 V), expect near 56.2 V, since DAC is at 5.619 V. Piezo Error = -9.5 V.
17-03-18 04:03:22.854 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.6 um, Read 10 ADC samples: Avg = 35532 (-167.7 uncal um), Error = 0.8 uncal um, Median = 35532 (-167.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35527 (-167.7 uncal um), Max = 35536 (-167.7 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 04:03:22.854 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35532, posNoise = 4, negNoise = 5
17-03-18 04:03:22.854 -07 000000610 INF: Z Motor: After move to -0.168565, error = -0.000024, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:03:22.854 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 04:03:22.854 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:03:22.854 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:03:22.854 -07 000000444 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:03:22.854 -07 000000579 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:03:22.854 -07 000000625 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:03:22.854 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:03:22.854 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:03:22.854 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:03:22.854 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:03:22.854 -07 000000625 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:03:22.854 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:03:22.854 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:03:22.864 -07 000000625 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 04:03:22.864 -07 000000625 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:03:22.864 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 04:03:22.864 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:03:22.874 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 04:03:22.874 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 04:03:22.874 -07 000000625 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-18 04:03:22.874 -07 000000625 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 04:03:22.874 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 414 414 199 199 36999 150\n [Camera]
17-03-18 04:03:23.074 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:03:23.494 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 608
17-03-18 04:03:23.494 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 608
17-03-18 04:03:23.494 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:03:23.494 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 608
17-03-18 04:03:23.494 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 608
17-03-18 04:03:23.494 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:03:23.494 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:03:23.494 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) start.
17-03-18 04:03:23.504 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:03:23.504 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2486767776, 0x0, 418435064) start.
17-03-18 04:03:23.684 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36999 799
17-03-18 04:03:23.834 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning grn on 949
17-03-18 04:03:23.874 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2486767776, 0x0, 418435064) end. Duration was 373 ms.
17-03-18 04:03:23.874 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 373 ms.
17-03-18 04:03:23.874 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:03:23.874 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) end. Duration was 379 ms.
17-03-18 04:03:23.874 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-18 04:03:23.874 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:03:23.884 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 04:03:23.884 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:03:23.884 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-18 04:03:23.884 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-18 04:03:24.034 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1148
17-03-18 04:03:24.034 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1148
17-03-18 04:03:24.034 -07 000000487 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:03:24.034 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1148
17-03-18 04:03:24.034 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1148
17-03-18 04:03:24.034 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:03:24.044 -07 000000487 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:03:24.044 -07 000000487 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) start.
17-03-18 04:03:24.044 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:03:24.044 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2602438304, 0x0, 418435064) start.
17-03-18 04:03:24.224 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP 1340
17-03-18 04:03:24.224 -07 000000590 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:03:24.224 -07 000000610 INF: FPGA: 'CAMDBLSNAP 414 414 199 199 36999 150' command took 2 ms to send, 1344 ms to get response, and 1347 ms overall
17-03-18 04:03:24.224 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 04:03:24.224 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 10 at Y-position 66.5380859375, Z-Position -0.168588457832185. ------
17-03-18 04:03:24.224 -07 000000455 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:03:24.224 -07 000000608 INF: Y Motor: MoveYZ optimized starting. Moving Y to 67.3826 mm, moving Z to -0.17542 mm
17-03-18 04:03:24.224 -07 000000608 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:03:24.234 -07 000000437 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:03:24.234 -07 000000455 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 4 ms to get response, and 5 ms overall
17-03-18 04:03:24.234 -07 000000455 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:03:24.234 -07 000000611 INF: Y Motor: Entering MoveAbsStepped (target = 107812 steps, sync = True, waitForSettling = True)
17-03-18 04:03:24.234 -07 000000611 INF: Y Motor: Moving to 67.3826 mm, started at 66.5381 mm, delta = 0.8445 mm
17-03-18 04:03:24.234 -07 000000618 INF: Z Motor: Entering MoveAbsStepped (DAC = 38320, sync = True, waitForSettling = False)
17-03-18 04:03:24.234 -07 000000618 INF: Z Motor: Moving to -0.175418 mm, started at -0.168588 mm, distance = -6.83 um
17-03-18 04:03:24.244 -07 000000611 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:03:24.244 -07 000000501 INF: FPGA: Recv YRDPOS 136271
17-03-18 04:03:24.254 -07 000000611 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-18 04:03:24.254 -07 000000611 INF: Y Motor: Encoder = 136271 = motor step 106461.7 = 66.5386 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:03:24.254 -07 000000618 INF: FPGA: Xmit ZDACW 38320\n [Z Motor]
17-03-18 04:03:24.254 -07 000000444 INF: FPGA: Recv ZDACW
17-03-18 04:03:24.254 -07 000000611 INF: Y Motor: Last commanded position = 66.5526 mm (106484.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:03:24.254 -07 000000611 INF: Y Motor: Moving 1350 steps-30
17-03-18 04:03:24.264 -07 000000618 INF: FPGA: 'ZDACW 38320' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-18 04:03:24.264 -07 000000618 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:03:24.264 -07 000000501 INF: FPGA: Recv ZDACR 38320
17-03-18 04:03:24.274 -07 000000618 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:24.274 -07 000000618 INF: Z Motor: MoveAbsStepped took 34 ms (did NOT wait for settling yet))
17-03-18 04:03:24.274 -07 000000611 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:03:24.434 -07 000000618 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:03:24.434 -07 000000455 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 197 ms to get response, and 202 ms overall
17-03-18 04:03:24.444 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2602438304, 0x0, 418435064) end. Duration was 398 ms.
17-03-18 04:03:24.444 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 04:03:24.444 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:03:24.444 -07 000000487 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) end. Duration was 400 ms.
17-03-18 04:03:24.444 -07 000000487 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 04:03:24.444 -07 000000487 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:03:24.444 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:03:24.444 -07 000000487 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:03:24.444 -07 000000487 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 413 ms.
17-03-18 04:03:24.454 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 416 ms.
17-03-18 04:03:24.644 -07 000000590 INF: FPGA: Recv YMVTILE
17-03-18 04:03:24.644 -07 000000611 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 394 ms overall
17-03-18 04:03:24.694 -07 000000611 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:03:24.694 -07 000000437 INF: FPGA: Recv YRDPOS 137976
17-03-18 04:03:24.704 -07 000000611 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 04:03:24.704 -07 000000611 INF: Y Motor: Encoder = 137976 = motor step 107793.8 = 67.3711 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:03:24.704 -07 000000611 INF: Y Motor: Position error before settling (table move) = -24 encoder counts (-0.012 mm)
17-03-18 04:03:24.704 -07 000000611 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.845 mm, average velocity = 2.143 mm/sec
17-03-18 04:03:25.514 -07 000000455 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 120, FrontChillerTemperature: 4.012614,
17-03-18 04:03:25.654 -07 000000611 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:03:25.654 -07 000000437 INF: FPGA: Recv YRDPOS 137976
17-03-18 04:03:25.664 -07 000000611 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:03:25.664 -07 000000611 INF: Y Motor: Encoder = 137976 = motor step 107793.8 = 67.3711 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:03:25.704 -07 000000611 INF: Y Motor: After move to 67.382607, error = -0.011513, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:03:25.704 -07 000000611 INF: Y Motor: Position error after settling (table move) = -24 encoder counts (-0.012 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:03:25.704 -07 000000611 INF: Y Motor: Moved to 67.3711 after 1466 ms (table move)
17-03-18 04:03:25.704 -07 000000608 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175418 mm (DAC = 38320)
17-03-18 04:03:25.704 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:25.714 -07 000000561 INF: FPGA: Recv ZSGSRD 36591
17-03-18 04:03:25.714 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-18 04:03:25.714 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:25.714 -07 000000012 INF: FPGA: Recv ZSGSRD 36603
17-03-18 04:03:25.724 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 04:03:25.724 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:25.724 -07 000000480 INF: FPGA: Recv ZSGSRD 36592
17-03-18 04:03:25.734 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:25.734 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:25.734 -07 000000618 INF: FPGA: Recv ZSGSRD 36592
17-03-18 04:03:25.744 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:25.744 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:25.744 -07 000000455 INF: FPGA: Recv ZSGSRD 36592
17-03-18 04:03:25.754 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:25.754 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:25.754 -07 000000437 INF: FPGA: Recv ZSGSRD 36593
17-03-18 04:03:25.764 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:25.764 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:25.764 -07 000000480 INF: FPGA: Recv ZSGSRD 36601
17-03-18 04:03:25.774 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:25.774 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:25.774 -07 000000579 INF: FPGA: Recv ZSGSRD 36596
17-03-18 04:03:25.784 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:25.784 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:25.784 -07 000000561 INF: FPGA: Recv ZSGSRD 36601
17-03-18 04:03:25.794 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:25.794 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:25.794 -07 000000437 INF: FPGA: Recv ZSGSRD 36602
17-03-18 04:03:25.804 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:25.804 -07 000000608 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:03:25.804 -07 000000512 INF: FPGA: Recv ZPIEZORD 32664
17-03-18 04:03:25.814 -07 000000608 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:25.814 -07 000000608 INF: Z Motor: Piezo is near 49.8 V (nominally 0 to 100 V), expect near 58.5 V, since DAC is at 5.847 V. Piezo Error = -8.7 V.
17-03-18 04:03:25.814 -07 000000608 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.4 um, Read 10 ADC samples: Avg = 36596 (-174.5 uncal um), Error = 0.9 uncal um, Median = 36594 (-174.5 uncal um), StdDev = 5 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 36591 (-174.5 uncal um), Max = 36603 (-174.6 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 04:03:25.814 -07 000000608 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36596, posNoise = 7, negNoise = 5
17-03-18 04:03:25.814 -07 000000608 INF: Z Motor: After move to -0.175418, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:03:25.814 -07 000000608 INF: Z Motor: Settle wait time = 1472 ms, measure time = 103 ms (allowed 150 ms), total time = 1575 ms
17-03-18 04:03:25.814 -07 000000608 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-18 04:03:25.864 -07 000000608 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1631 ms
17-03-18 04:03:25.864 -07 000000608 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:03:25.864 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:03:25.864 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:03:25.864 -07 000000611 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:03:25.864 -07 000000012 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:03:25.864 -07 000000561 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:03:25.864 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:03:25.864 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:03:25.864 -07 000000561 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:03:25.874 -07 000000561 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 04:03:25.874 -07 000000561 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:03:25.874 -07 000000561 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 04:03:25.874 -07 000000561 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 04:03:25.884 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:03:25.924 -07 000000437 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:03:26.224 -07 000000444 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:03:26.224 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:03:26.224 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:03:26.344 -07 000000012 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:03:26.344 -07 000000012 INF: FPGA: Recv CAMSNAP
17-03-18 04:03:26.344 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 452 ms to get response, and 460 ms overall
17-03-18 04:03:26.344 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2336209168, 0x0, 559484976) start.
17-03-18 04:03:26.454 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2336209168, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 04:03:26.454 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:03:26.464 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 04:03:26.464 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 232 ms.
17-03-18 04:03:26.544 -07 000000618 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:03:26.544 -07 000000625 INF: Autofocus start
17-03-18 04:03:26.544 -07 000000625 INF: MeasureProfile start
17-03-18 04:03:26.544 -07 000000608 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:03:26.554 -07 000000618 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:03:26.554 -07 000000618 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:03:26.564 -07 000000625 INF: MeasureProfile done
17-03-18 04:03:26.564 -07 000000625 INF: X=16  Z correction [um]=0.01042744
17-03-18 04:03:26.564 -07 000000625 INF: Autofocus finished
17-03-18 04:03:26.634 -07 000000579 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:03:26.634 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 119. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1710, R2=1777, Total=3487. Warn if over 250 bubbles per interval.
17-03-18 04:03:26.754 -07 000000487 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:03:26.754 -07 000000618 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:03:26.754 -07 000000610 INF: ------------ Scan Snapping tile 10 at Y-position 67.37109375, Z-position -0.175423819551019. ----------
17-03-18 04:03:26.754 -07 000000610 INF: Cycle	120	Tile	10	Exposure Settings		A	414	G	199	T	199	C	414
17-03-18 04:03:26.764 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36834, sync = True, waitForSettling = True)
17-03-18 04:03:26.764 -07 000000610 INF: Z Motor: Moving to -0.168615 mm, started at -0.175424 mm, distance = 6.81 um
17-03-18 04:03:26.764 -07 000000610 INF: FPGA: Xmit ZDACW 36834\n [Z Motor]
17-03-18 04:03:26.764 -07 000000444 INF: FPGA: Recv ZDACW
17-03-18 04:03:26.774 -07 000000610 INF: FPGA: 'ZDACW 36834' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 04:03:26.774 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:03:26.774 -07 000000579 INF: FPGA: Recv ZDACR 36834
17-03-18 04:03:26.784 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:26.784 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:03:26.934 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:26.934 -07 000000625 INF: FPGA: Recv ZSGSRD 35539
17-03-18 04:03:26.944 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:03:26.944 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:26.944 -07 000000012 INF: FPGA: Recv ZSGSRD 35539
17-03-18 04:03:26.954 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:26.954 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:26.954 -07 000000590 INF: FPGA: Recv ZSGSRD 35543
17-03-18 04:03:26.964 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:26.964 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:26.964 -07 000000611 INF: FPGA: Recv ZSGSRD 35533
17-03-18 04:03:26.974 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:26.974 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:26.974 -07 000000625 INF: FPGA: Recv ZSGSRD 35537
17-03-18 04:03:26.984 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:26.984 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:26.984 -07 000000012 INF: FPGA: Recv ZSGSRD 35543
17-03-18 04:03:26.994 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:26.994 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:26.994 -07 000000480 INF: FPGA: Recv ZSGSRD 35538
17-03-18 04:03:27.004 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:27.004 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:27.004 -07 000000561 INF: FPGA: Recv ZSGSRD 35539
17-03-18 04:03:27.014 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:27.014 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:27.014 -07 000000590 INF: FPGA: Recv ZSGSRD 35537
17-03-18 04:03:27.024 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:27.024 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:27.024 -07 000000608 INF: FPGA: Recv ZSGSRD 35536
17-03-18 04:03:27.034 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:27.034 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:03:27.034 -07 000000012 INF: FPGA: Recv ZPIEZORD 31263
17-03-18 04:03:27.044 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:27.044 -07 000000610 INF: Z Motor: Piezo is near 46.8 V (nominally 0 to 100 V), expect near 56.2 V, since DAC is at 5.621 V. Piezo Error = -9.4 V.
17-03-18 04:03:27.044 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.6 um, Read 10 ADC samples: Avg = 35538 (-167.8 uncal um), Error = 0.9 uncal um, Median = 35538 (-167.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35533 (-167.7 uncal um), Max = 35543 (-167.8 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 04:03:27.044 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35538, posNoise = 5, negNoise = 5
17-03-18 04:03:27.044 -07 000000610 INF: Z Motor: After move to -0.168615, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:03:27.044 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 04:03:27.044 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:03:27.044 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:03:27.044 -07 000000608 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:03:27.044 -07 000000625 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:03:27.044 -07 000000437 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:03:27.044 -07 000000590 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:03:27.044 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:03:27.044 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:03:27.044 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:03:27.044 -07 000000590 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:03:27.044 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:03:27.044 -07 000000437 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:03:27.044 -07 000000590 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 04:03:27.044 -07 000000590 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:03:27.054 -07 000000437 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 04:03:27.054 -07 000000437 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:03:27.054 -07 000000590 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 04:03:27.054 -07 000000590 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 12 ms.
17-03-18 04:03:27.054 -07 000000437 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 04:03:27.054 -07 000000437 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 04:03:27.064 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 414 414 199 199 37011 150\n [Camera]
17-03-18 04:03:27.264 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:03:27.674 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 606
17-03-18 04:03:27.674 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 606
17-03-18 04:03:27.674 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:03:27.684 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 606
17-03-18 04:03:27.684 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 606
17-03-18 04:03:27.684 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:03:27.684 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:03:27.684 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 583729424, 0x0, 391868352) start.
17-03-18 04:03:27.684 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:03:27.684 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-18 04:03:27.874 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37011 799
17-03-18 04:03:28.014 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP turning grn on 949
17-03-18 04:03:28.074 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 583729424, 0x0, 391868352) end. Duration was 395 ms.
17-03-18 04:03:28.074 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 04:03:28.074 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:03:28.084 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:03:28.084 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 04:03:28.084 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 397 ms.
17-03-18 04:03:28.084 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-18 04:03:28.084 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:03:28.084 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:03:28.094 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-18 04:03:28.214 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1148
17-03-18 04:03:28.224 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1148
17-03-18 04:03:28.224 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:03:28.224 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1148
17-03-18 04:03:28.224 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1148
17-03-18 04:03:28.224 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:03:28.334 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:03:28.344 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) start.
17-03-18 04:03:28.344 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:03:28.344 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-18 04:03:28.414 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP 1340
17-03-18 04:03:28.414 -07 000000590 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:03:28.414 -07 000000610 INF: FPGA: 'CAMDBLSNAP 414 414 199 199 37011 150' command took 2 ms to send, 1341 ms to get response, and 1347 ms overall
17-03-18 04:03:28.414 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 04:03:28.414 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 11 at Y-position 67.37109375, Z-Position -0.168627003105036. ------
17-03-18 04:03:28.414 -07 000000579 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:03:28.414 -07 000000444 INF: Y Motor: MoveYZ optimized starting. Moving Y to 68.2126 mm, moving Z to -0.17486 mm
17-03-18 04:03:28.414 -07 000000444 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:03:28.414 -07 000000625 INF: Y Motor: Entering MoveAbsStepped (target = 109140 steps, sync = True, waitForSettling = True)
17-03-18 04:03:28.414 -07 000000625 INF: Y Motor: Moving to 68.2126 mm, started at 67.3711 mm, delta = 0.8415 mm
17-03-18 04:03:28.414 -07 000000487 INF: Z Motor: Entering MoveAbsStepped (DAC = 38198, sync = True, waitForSettling = False)
17-03-18 04:03:28.414 -07 000000487 INF: Z Motor: Moving to -0.174859 mm, started at -0.168627 mm, distance = -6.23 um
17-03-18 04:03:28.414 -07 000000608 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:03:28.424 -07 000000579 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 04:03:28.424 -07 000000625 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:03:28.424 -07 000000608 INF: FPGA: Recv YRDPOS 137976
17-03-18 04:03:28.434 -07 000000625 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:03:28.434 -07 000000579 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:03:28.434 -07 000000625 INF: Y Motor: Encoder = 137976 = motor step 107793.8 = 67.3711 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:03:28.434 -07 000000625 INF: Y Motor: Last commanded position = 67.3826 mm (107812.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:03:28.434 -07 000000625 INF: Y Motor: Moving 1346 steps-24
17-03-18 04:03:28.444 -07 000000487 INF: FPGA: Xmit ZDACW 38198\n [Z Motor]
17-03-18 04:03:28.444 -07 000000480 INF: FPGA: Recv ZDACW
17-03-18 04:03:28.454 -07 000000487 INF: FPGA: 'ZDACW 38198' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-18 04:03:28.454 -07 000000625 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:03:28.464 -07 000000487 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:03:28.464 -07 000000512 INF: FPGA: Recv ZDACR 38198
17-03-18 04:03:28.474 -07 000000487 INF: FPGA: 'ZDACR' command took 1 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 04:03:28.474 -07 000000487 INF: Z Motor: MoveAbsStepped took 51 ms (did NOT wait for settling yet))
17-03-18 04:03:28.634 -07 000000590 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:03:28.634 -07 000000579 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 212 ms overall
17-03-18 04:03:28.734 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) end. Duration was 398 ms.
17-03-18 04:03:28.734 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-18 04:03:28.734 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:03:28.744 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 398 ms.
17-03-18 04:03:28.744 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 04:03:28.744 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:03:28.744 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:03:28.744 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:03:28.744 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 524 ms.
17-03-18 04:03:28.754 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 527 ms.
17-03-18 04:03:28.824 -07 000000512 INF: FPGA: Recv YMVTILE
17-03-18 04:03:28.824 -07 000000625 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 04:03:28.874 -07 000000625 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:03:28.874 -07 000000455 INF: FPGA: Recv YRDPOS 139682
17-03-18 04:03:28.884 -07 000000625 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 04:03:28.884 -07 000000625 INF: Y Motor: Encoder = 139682 = motor step 109126.6 = 68.2041 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:03:28.884 -07 000000625 INF: Y Motor: Position error before settling (table move) = -17 encoder counts (-0.008 mm)
17-03-18 04:03:28.884 -07 000000625 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.842 mm, average velocity = 2.120 mm/sec
17-03-18 04:03:29.834 -07 000000625 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:03:29.834 -07 000000487 INF: FPGA: Recv YRDPOS 139683
17-03-18 04:03:29.844 -07 000000625 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:29.844 -07 000000625 INF: Y Motor: Encoder = 139683 = motor step 109127.3 = 68.2046 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:03:29.864 -07 000000625 INF: Y Motor: After move to 68.212608, error = -0.008018, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:03:29.864 -07 000000625 INF: Y Motor: Position error after settling (table move) = -16 encoder counts (-0.008 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 04:03:29.864 -07 000000625 INF: Y Motor: Moved to 68.2046 after 1449 ms (table move)
17-03-18 04:03:29.874 -07 000000444 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174859 mm (DAC = 38198)
17-03-18 04:03:29.874 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:29.874 -07 000000512 INF: FPGA: Recv ZSGSRD 36507
17-03-18 04:03:29.884 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 04:03:29.884 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:29.884 -07 000000501 INF: FPGA: Recv ZSGSRD 36516
17-03-18 04:03:29.894 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:29.894 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:29.894 -07 000000579 INF: FPGA: Recv ZSGSRD 36509
17-03-18 04:03:29.904 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:29.904 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:29.904 -07 000000487 INF: FPGA: Recv ZSGSRD 36508
17-03-18 04:03:29.914 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:29.914 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:29.914 -07 000000561 INF: FPGA: Recv ZSGSRD 36511
17-03-18 04:03:29.924 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:29.924 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:29.924 -07 000000012 INF: FPGA: Recv ZSGSRD 36502
17-03-18 04:03:29.934 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:29.934 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:29.934 -07 000000501 INF: FPGA: Recv ZSGSRD 36511
17-03-18 04:03:29.944 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:29.944 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:29.944 -07 000000487 INF: FPGA: Recv ZSGSRD 36510
17-03-18 04:03:29.954 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:29.954 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:29.954 -07 000000611 INF: FPGA: Recv ZSGSRD 36506
17-03-18 04:03:29.964 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:29.964 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:29.964 -07 000000012 INF: FPGA: Recv ZSGSRD 36515
17-03-18 04:03:29.974 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:29.974 -07 000000444 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:03:29.974 -07 000000437 INF: FPGA: Recv ZPIEZORD 32561
17-03-18 04:03:29.984 -07 000000444 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:29.984 -07 000000444 INF: Z Motor: Piezo is near 49.6 V (nominally 0 to 100 V), expect near 58.3 V, since DAC is at 5.829 V. Piezo Error = -8.7 V.
17-03-18 04:03:29.984 -07 000000444 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.9 um, Read 10 ADC samples: Avg = 36510 (-174.0 uncal um), Error = 0.9 uncal um, Median = 36510 (-174.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 36502 (-173.9 uncal um), Max = 36516 (-174.0 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 04:03:29.984 -07 000000444 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36510, posNoise = 6, negNoise = 8
17-03-18 04:03:29.984 -07 000000444 INF: Z Motor: After move to -0.174859, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:03:29.984 -07 000000444 INF: Z Motor: Settle wait time = 1452 ms, measure time = 109 ms (allowed 150 ms), total time = 1561 ms
17-03-18 04:03:29.984 -07 000000444 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-18 04:03:30.034 -07 000000444 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1613 ms
17-03-18 04:03:30.034 -07 000000444 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:03:30.034 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:03:30.034 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:03:30.034 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:03:30.034 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:03:30.034 -07 000000625 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:03:30.034 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:03:30.034 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:03:30.034 -07 000000625 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:03:30.044 -07 000000625 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 04:03:30.044 -07 000000625 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:03:30.044 -07 000000625 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 04:03:30.044 -07 000000625 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 04:03:30.054 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:03:30.094 -07 000000444 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:03:30.394 -07 000000561 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:03:30.394 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:03:30.394 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:03:30.404 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 596199184, 0x0, 559484976) start.
17-03-18 04:03:30.434 -07 000000437 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:03:30.434 -07 000000590 INF: FPGA: Recv CAMSNAP
17-03-18 04:03:30.434 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 384 ms overall
17-03-18 04:03:30.514 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 596199184, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 04:03:30.514 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:03:30.514 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 04:03:30.514 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 04:03:30.534 -07 000000618 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:03:30.534 -07 000000579 INF: Autofocus start
17-03-18 04:03:30.534 -07 000000579 INF: MeasureProfile start
17-03-18 04:03:30.534 -07 000000512 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:03:30.544 -07 000000618 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 04:03:30.544 -07 000000618 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:03:30.554 -07 000000579 INF: MeasureProfile done
17-03-18 04:03:30.554 -07 000000579 INF: X=16  Z correction [um]=0.01042744
17-03-18 04:03:30.554 -07 000000579 INF: Autofocus finished
17-03-18 04:03:30.744 -07 000000480 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:03:30.744 -07 000000618 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 203 ms overall
17-03-18 04:03:30.754 -07 000000610 INF: ------------ Scan Snapping tile 11 at Y-position 68.20458984375, Z-position -0.174871337306828. ----------
17-03-18 04:03:30.754 -07 000000610 INF: Cycle	120	Tile	11	Exposure Settings		A	414	G	199	T	199	C	414
17-03-18 04:03:30.754 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36712, sync = True, waitForSettling = True)
17-03-18 04:03:30.754 -07 000000610 INF: Z Motor: Moving to -0.168057 mm, started at -0.174871 mm, distance = 6.81 um
17-03-18 04:03:30.754 -07 000000610 INF: FPGA: Xmit ZDACW 36712\n [Z Motor]
17-03-18 04:03:30.754 -07 000000501 INF: FPGA: Recv ZDACW
17-03-18 04:03:30.764 -07 000000610 INF: FPGA: 'ZDACW 36712' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 04:03:30.764 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:03:30.764 -07 000000611 INF: FPGA: Recv ZDACR 36712
17-03-18 04:03:30.774 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:30.774 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:03:30.874 -07 000000480 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 120, FrontChillerTemperature: 4.019446,
17-03-18 04:03:30.924 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:30.924 -07 000000437 INF: FPGA: Recv ZSGSRD 35449
17-03-18 04:03:30.934 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:03:30.934 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:30.934 -07 000000590 INF: FPGA: Recv ZSGSRD 35462
17-03-18 04:03:30.944 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:30.944 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:30.944 -07 000000444 INF: FPGA: Recv ZSGSRD 35453
17-03-18 04:03:30.954 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:30.954 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:30.954 -07 000000579 INF: FPGA: Recv ZSGSRD 35448
17-03-18 04:03:30.964 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:30.964 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:30.964 -07 000000437 INF: FPGA: Recv ZSGSRD 35448
17-03-18 04:03:30.974 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:30.974 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:30.974 -07 000000480 INF: FPGA: Recv ZSGSRD 35459
17-03-18 04:03:30.984 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:30.984 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:30.984 -07 000000618 INF: FPGA: Recv ZSGSRD 35453
17-03-18 04:03:30.994 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:30.994 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:30.994 -07 000000625 INF: FPGA: Recv ZSGSRD 35443
17-03-18 04:03:31.004 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:31.004 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:31.004 -07 000000579 INF: FPGA: Recv ZSGSRD 35453
17-03-18 04:03:31.014 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:31.014 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:31.014 -07 000000590 INF: FPGA: Recv ZSGSRD 35455
17-03-18 04:03:31.024 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:31.024 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:03:31.024 -07 000000437 INF: FPGA: Recv ZPIEZORD 31167
17-03-18 04:03:31.034 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:31.034 -07 000000610 INF: Z Motor: Piezo is near 46.6 V (nominally 0 to 100 V), expect near 56.0 V, since DAC is at 5.602 V. Piezo Error = -9.4 V.
17-03-18 04:03:31.034 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.1 um, Read 10 ADC samples: Avg = 35452 (-167.2 uncal um), Error = 0.9 uncal um, Median = 35453 (-167.2 uncal um), StdDev = 6 (0.0 uncal um), Range = 19 (0.1 uncal um), Min = 35443 (-167.1 uncal um), Max = 35462 (-167.3 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-18 04:03:31.034 -07 000000610 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35452, posNoise = 10, negNoise = 9
17-03-18 04:03:31.034 -07 000000610 INF: Z Motor: After move to -0.168057, error = -0.000018, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:03:31.034 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-18 04:03:31.034 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:03:31.034 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:03:31.034 -07 000000487 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:03:31.034 -07 000000590 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:03:31.034 -07 000000579 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:03:31.034 -07 000000608 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:03:31.034 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:03:31.034 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:03:31.034 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:03:31.034 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:03:31.034 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:03:31.044 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:03:31.044 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-18 04:03:31.044 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:03:31.044 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 5 ms.
17-03-18 04:03:31.044 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:03:31.064 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 04:03:31.064 -07 000000579 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 23 ms.
17-03-18 04:03:31.064 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 04:03:31.064 -07 000000608 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 24 ms.
17-03-18 04:03:31.064 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 414 414 199 199 36889 150\n [Camera]
17-03-18 04:03:31.264 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:03:31.634 -07 000000455 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:03:31.634 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 119. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1710, R2=1777, Total=3487. Warn if over 250 bubbles per interval.
17-03-18 04:03:31.674 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 606
17-03-18 04:03:31.674 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 606
17-03-18 04:03:31.674 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:03:31.684 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 606
17-03-18 04:03:31.684 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 606
17-03-18 04:03:31.684 -07 000000487 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:03:31.684 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:03:31.684 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-18 04:03:31.684 -07 000000487 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:03:31.684 -07 000000487 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) start.
17-03-18 04:03:31.874 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36889 799
17-03-18 04:03:32.024 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP turning grn on 949
17-03-18 04:03:32.074 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 395 ms.
17-03-18 04:03:32.074 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 04:03:32.074 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:03:32.084 -07 000000487 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) end. Duration was 396 ms.
17-03-18 04:03:32.084 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:03:32.084 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 04:03:32.084 -07 000000487 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 04:03:32.084 -07 000000487 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:03:32.084 -07 000000487 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:03:32.094 -07 000000487 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-18 04:03:32.224 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1148
17-03-18 04:03:32.224 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1148
17-03-18 04:03:32.224 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:03:32.224 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1148
17-03-18 04:03:32.224 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1148
17-03-18 04:03:32.224 -07 000000625 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:03:32.224 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:03:32.224 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) start.
17-03-18 04:03:32.234 -07 000000625 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:03:32.234 -07 000000625 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-18 04:03:32.414 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP 1340
17-03-18 04:03:32.414 -07 000000611 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:03:32.414 -07 000000610 INF: FPGA: 'CAMDBLSNAP 414 414 199 199 36889 150' command took 2 ms to send, 1342 ms to get response, and 1347 ms overall
17-03-18 04:03:32.414 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 04:03:32.414 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 12 at Y-position 68.20458984375, Z-Position -0.168074520860844. ------
17-03-18 04:03:32.414 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:03:32.414 -07 000000512 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.0426 mm, moving Z to -0.17473 mm
17-03-18 04:03:32.414 -07 000000512 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:03:32.424 -07 000000608 INF: Y Motor: Entering MoveAbsStepped (target = 110468 steps, sync = True, waitForSettling = True)
17-03-18 04:03:32.424 -07 000000608 INF: Y Motor: Moving to 69.0426 mm, started at 68.2046 mm, delta = 0.8380 mm
17-03-18 04:03:32.424 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:03:32.424 -07 000000480 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:03:32.424 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 04:03:32.424 -07 000000455 INF: Z Motor: Entering MoveAbsStepped (DAC = 38169, sync = True, waitForSettling = False)
17-03-18 04:03:32.424 -07 000000455 INF: Z Motor: Moving to -0.174726 mm, started at -0.168075 mm, distance = -6.65 um
17-03-18 04:03:32.424 -07 000000437 INF: FPGA: Recv YRDPOS 139683
17-03-18 04:03:32.434 -07 000000455 INF: FPGA: Xmit ZDACW 38169\n [Z Motor]
17-03-18 04:03:32.434 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:32.434 -07 000000608 INF: Y Motor: Encoder = 139683 = motor step 109127.3 = 68.2046 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:03:32.434 -07 000000608 INF: Y Motor: Last commanded position = 68.2126 mm (109140.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:03:32.434 -07 000000608 INF: Y Motor: Moving 1341 steps-17
17-03-18 04:03:32.434 -07 000000012 INF: FPGA: Recv ZDACW
17-03-18 04:03:32.444 -07 000000455 INF: FPGA: 'ZDACW 38169' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-18 04:03:32.444 -07 000000501 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:03:32.454 -07 000000608 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:03:32.464 -07 000000455 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:03:32.464 -07 000000480 INF: FPGA: Recv ZDACR 38169
17-03-18 04:03:32.474 -07 000000455 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 04:03:32.474 -07 000000455 INF: Z Motor: MoveAbsStepped took 48 ms (did NOT wait for settling yet))
17-03-18 04:03:32.624 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) end. Duration was 397 ms.
17-03-18 04:03:32.624 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 04:03:32.624 -07 000000444 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:03:32.624 -07 000000625 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 397 ms.
17-03-18 04:03:32.624 -07 000000625 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-18 04:03:32.624 -07 000000625 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:03:32.634 -07 000000444 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:03:32.634 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 410 ms.
17-03-18 04:03:32.634 -07 000000625 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:03:32.634 -07 000000625 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-18 04:03:32.644 -07 000000487 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:03:32.644 -07 000000501 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 221 ms overall
17-03-18 04:03:32.824 -07 000000561 INF: FPGA: Recv YMVTILE
17-03-18 04:03:32.824 -07 000000608 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 04:03:32.874 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:03:32.874 -07 000000625 INF: FPGA: Recv YRDPOS 141366
17-03-18 04:03:32.884 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 04:03:32.884 -07 000000608 INF: Y Motor: Encoder = 141366 = motor step 110442.2 = 69.0264 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:03:32.884 -07 000000608 INF: Y Motor: Position error before settling (table move) = -33 encoder counts (-0.016 mm)
17-03-18 04:03:32.884 -07 000000608 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.838 mm, average velocity = 2.111 mm/sec
17-03-18 04:03:33.834 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:03:33.834 -07 000000437 INF: FPGA: Recv YRDPOS 141366
17-03-18 04:03:33.844 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:03:33.844 -07 000000608 INF: Y Motor: Encoder = 141366 = motor step 110442.2 = 69.0264 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:03:33.874 -07 000000608 INF: Y Motor: After move to 69.042610, error = -0.016243, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:03:33.874 -07 000000608 INF: Y Motor: Position error after settling (table move) = -33 encoder counts (-0.016 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:03:33.874 -07 000000608 INF: Y Motor: Moved to 69.0264 after 1459 ms (table move)
17-03-18 04:03:33.884 -07 000000512 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174726 mm (DAC = 38169)
17-03-18 04:03:33.884 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:33.884 -07 000000625 INF: FPGA: Recv ZSGSRD 36489
17-03-18 04:03:33.894 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:03:33.894 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:33.894 -07 000000618 INF: FPGA: Recv ZSGSRD 36490
17-03-18 04:03:33.904 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:33.904 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:33.904 -07 000000501 INF: FPGA: Recv ZSGSRD 36487
17-03-18 04:03:33.914 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:33.914 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:33.914 -07 000000455 INF: FPGA: Recv ZSGSRD 36484
17-03-18 04:03:33.924 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:33.924 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:33.924 -07 000000561 INF: FPGA: Recv ZSGSRD 36489
17-03-18 04:03:33.934 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:33.934 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:33.934 -07 000000444 INF: FPGA: Recv ZSGSRD 36489
17-03-18 04:03:33.944 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:33.944 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:33.944 -07 000000590 INF: FPGA: Recv ZSGSRD 36482
17-03-18 04:03:33.954 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:33.954 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:33.954 -07 000000480 INF: FPGA: Recv ZSGSRD 36490
17-03-18 04:03:33.964 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:33.964 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:33.964 -07 000000480 INF: FPGA: Recv ZSGSRD 36493
17-03-18 04:03:33.974 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:33.974 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:33.974 -07 000000579 INF: FPGA: Recv ZSGSRD 36487
17-03-18 04:03:33.984 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:33.984 -07 000000512 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:03:33.984 -07 000000608 INF: FPGA: Recv ZPIEZORD 32546
17-03-18 04:03:33.994 -07 000000512 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:33.994 -07 000000512 INF: Z Motor: Piezo is near 49.5 V (nominally 0 to 100 V), expect near 58.2 V, since DAC is at 5.824 V. Piezo Error = -8.7 V.
17-03-18 04:03:33.994 -07 000000512 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.7 um, Read 10 ADC samples: Avg = 36488 (-173.8 uncal um), Error = 0.9 uncal um, Median = 36489 (-173.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 36482 (-173.8 uncal um), Max = 36493 (-173.9 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 04:03:33.994 -07 000000512 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36488, posNoise = 5, negNoise = 6
17-03-18 04:03:33.994 -07 000000512 INF: Z Motor: After move to -0.174726, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:03:33.994 -07 000000512 INF: Z Motor: Settle wait time = 1461 ms, measure time = 107 ms (allowed 150 ms), total time = 1568 ms
17-03-18 04:03:33.994 -07 000000512 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-18 04:03:34.044 -07 000000512 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1621 ms
17-03-18 04:03:34.044 -07 000000512 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:03:34.044 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:03:34.044 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:03:34.044 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:03:34.044 -07 000000012 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:03:34.044 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:03:34.044 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:03:34.044 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 04:03:34.044 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:03:34.044 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 04:03:34.054 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:03:34.054 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 04:03:34.054 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-18 04:03:34.064 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:03:34.104 -07 000000512 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:03:34.404 -07 000000611 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:03:34.404 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:03:34.404 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:03:34.404 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2352550048, 0x0, 559484976) start.
17-03-18 04:03:34.444 -07 000000455 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:03:34.444 -07 000000480 INF: FPGA: Recv CAMSNAP
17-03-18 04:03:34.444 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 04:03:34.524 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2352550048, 0x0, 559484976) end. Duration was 113 ms.
17-03-18 04:03:34.524 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:03:34.524 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 04:03:34.524 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 116 ms.
17-03-18 04:03:34.544 -07 000000611 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:03:34.544 -07 000000437 INF: Autofocus start
17-03-18 04:03:34.544 -07 000000437 INF: MeasureProfile start
17-03-18 04:03:34.544 -07 000000579 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:03:34.554 -07 000000611 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:03:34.554 -07 000000611 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:03:34.554 -07 000000437 INF: MeasureProfile done
17-03-18 04:03:34.554 -07 000000437 INF: X=-16  Z correction [um]=-0.1496812
17-03-18 04:03:34.554 -07 000000437 INF: Autofocus finished
17-03-18 04:03:34.754 -07 000000012 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:03:34.754 -07 000000611 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:03:34.754 -07 000000610 INF: ------------ Scan Snapping tile 12 at Y-position 69.0263671875, Z-position -0.174730004639709. ----------
17-03-18 04:03:34.764 -07 000000610 INF: Cycle	120	Tile	12	Exposure Settings		A	414	G	199	T	199	C	414
17-03-18 04:03:34.764 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36649, sync = True, waitForSettling = True)
17-03-18 04:03:34.764 -07 000000610 INF: Z Motor: Moving to -0.167768 mm, started at -0.174730 mm, distance = 6.96 um
17-03-18 04:03:34.764 -07 000000610 INF: FPGA: Xmit ZDACW 36649\n [Z Motor]
17-03-18 04:03:34.764 -07 000000579 INF: FPGA: Recv ZDACW
17-03-18 04:03:34.774 -07 000000610 INF: FPGA: 'ZDACW 36649' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 04:03:34.774 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:03:34.774 -07 000000487 INF: FPGA: Recv ZDACR 36649
17-03-18 04:03:34.784 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:34.784 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:03:34.934 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:34.934 -07 000000618 INF: FPGA: Recv ZSGSRD 35409
17-03-18 04:03:34.944 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:03:34.944 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:34.944 -07 000000437 INF: FPGA: Recv ZSGSRD 35418
17-03-18 04:03:34.954 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:34.954 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:34.954 -07 000000501 INF: FPGA: Recv ZSGSRD 35404
17-03-18 04:03:34.964 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:34.964 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:34.964 -07 000000512 INF: FPGA: Recv ZSGSRD 35403
17-03-18 04:03:34.974 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:34.974 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:34.974 -07 000000487 INF: FPGA: Recv ZSGSRD 35405
17-03-18 04:03:34.984 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:34.984 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:34.984 -07 000000437 INF: FPGA: Recv ZSGSRD 35407
17-03-18 04:03:34.994 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:34.994 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:34.994 -07 000000455 INF: FPGA: Recv ZSGSRD 35409
17-03-18 04:03:35.004 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:35.004 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:35.004 -07 000000590 INF: FPGA: Recv ZSGSRD 35409
17-03-18 04:03:35.014 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:35.014 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:35.014 -07 000000608 INF: FPGA: Recv ZSGSRD 35403
17-03-18 04:03:35.024 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:35.024 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:35.024 -07 000000611 INF: FPGA: Recv ZSGSRD 35406
17-03-18 04:03:35.034 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:35.034 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:03:35.034 -07 000000455 INF: FPGA: Recv ZPIEZORD 31118
17-03-18 04:03:35.044 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:35.044 -07 000000610 INF: Z Motor: Piezo is near 46.5 V (nominally 0 to 100 V), expect near 55.9 V, since DAC is at 5.592 V. Piezo Error = -9.4 V.
17-03-18 04:03:35.044 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.8 um, Read 10 ADC samples: Avg = 35407 (-166.9 uncal um), Error = 0.9 uncal um, Median = 35406 (-166.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 35403 (-166.9 uncal um), Max = 35418 (-167.0 uncal um), Pos Noise = 11 (0.1 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 04:03:35.044 -07 000000610 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35407, posNoise = 11, negNoise = 4
17-03-18 04:03:35.044 -07 000000610 INF: Z Motor: After move to -0.167768, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:03:35.044 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 04:03:35.044 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:03:35.044 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:03:35.044 -07 000000487 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:03:35.044 -07 000000444 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:03:35.044 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:03:35.044 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:03:35.044 -07 000000608 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:03:35.044 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:03:35.044 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:03:35.044 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:03:35.044 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-18 04:03:35.044 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:03:35.054 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 04:03:35.054 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:03:35.054 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 04:03:35.054 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:03:35.064 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 14 ms.
17-03-18 04:03:35.064 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 04:03:35.064 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 04:03:35.064 -07 000000608 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 23 ms.
17-03-18 04:03:35.074 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 414 414 199 199 36826 150\n [Camera]
17-03-18 04:03:35.274 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:03:35.684 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 606
17-03-18 04:03:35.684 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 606
17-03-18 04:03:35.684 -07 000000487 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:03:35.684 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 606
17-03-18 04:03:35.684 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 606
17-03-18 04:03:35.684 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:03:35.694 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:03:35.694 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 04:03:35.694 -07 000000487 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:03:35.694 -07 000000487 INF: Camera: sBCa_ReadImage(785074288, 2602438304, 0x0, 391868352) start.
17-03-18 04:03:35.874 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36826 799
17-03-18 04:03:36.024 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP turning grn on 949
17-03-18 04:03:36.084 -07 000000487 INF: Camera: sBCa_ReadImage(785074288, 2602438304, 0x0, 391868352) end. Duration was 391 ms.
17-03-18 04:03:36.084 -07 000000487 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-18 04:03:36.084 -07 000000487 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:03:36.084 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 396 ms.
17-03-18 04:03:36.084 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 04:03:36.084 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:03:36.084 -07 000000487 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:03:36.084 -07 000000487 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 04:03:36.094 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:03:36.094 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 407 ms.
17-03-18 04:03:36.224 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1148
17-03-18 04:03:36.224 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1148
17-03-18 04:03:36.234 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1148
17-03-18 04:03:36.234 -07 000000611 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:03:36.234 -07 000000444 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 120, FrontChillerTemperature: 4.014009,
17-03-18 04:03:36.234 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1148
17-03-18 04:03:36.234 -07 000000437 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:03:36.234 -07 000000611 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:03:36.234 -07 000000611 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 04:03:36.234 -07 000000437 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:03:36.234 -07 000000437 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start.
17-03-18 04:03:36.414 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP 1341
17-03-18 04:03:36.414 -07 000000625 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:03:36.414 -07 000000610 INF: FPGA: 'CAMDBLSNAP 414 414 199 199 36826 150' command took 2 ms to send, 1339 ms to get response, and 1348 ms overall
17-03-18 04:03:36.424 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 04:03:36.424 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 13 at Y-position 69.0263671875, Z-Position -0.167785431314465. ------
17-03-18 04:03:36.424 -07 000000455 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:03:36.424 -07 000000590 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.8726 mm, moving Z to -0.17420 mm
17-03-18 04:03:36.424 -07 000000590 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:03:36.424 -07 000000561 INF: Y Motor: Entering MoveAbsStepped (target = 111796 steps, sync = True, waitForSettling = True)
17-03-18 04:03:36.424 -07 000000480 INF: Z Motor: Entering MoveAbsStepped (DAC = 38054, sync = True, waitForSettling = False)
17-03-18 04:03:36.424 -07 000000480 INF: Z Motor: Moving to -0.174200 mm, started at -0.167785 mm, distance = -6.41 um
17-03-18 04:03:36.424 -07 000000561 INF: Y Motor: Moving to 69.8726 mm, started at 69.0264 mm, delta = 0.8462 mm
17-03-18 04:03:36.424 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:03:36.434 -07 000000455 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:03:36.434 -07 000000480 INF: FPGA: Xmit ZDACW 38054\n [Z Motor]
17-03-18 04:03:36.434 -07 000000512 INF: FPGA: Recv ZDACW
17-03-18 04:03:36.444 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:03:36.444 -07 000000480 INF: FPGA: 'ZDACW 38054' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-18 04:03:36.444 -07 000000608 INF: FPGA: Recv YRDPOS 141367
17-03-18 04:03:36.454 -07 000000455 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:03:36.454 -07 000000561 INF: FPGA: 'YRDPOS' command took 3 ms to send, 0 ms to get response, and 22 ms overall
17-03-18 04:03:36.454 -07 000000561 INF: Y Motor: Encoder = 141367 = motor step 110443.0 = 69.0269 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:03:36.454 -07 000000561 INF: Y Motor: Last commanded position = 69.0426 mm (110468.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:03:36.454 -07 000000561 INF: Y Motor: Moving 1353 steps-33
17-03-18 04:03:36.464 -07 000000480 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:03:36.464 -07 000000608 INF: FPGA: Recv ZDACR 38054
17-03-18 04:03:36.474 -07 000000561 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:03:36.474 -07 000000480 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-18 04:03:36.474 -07 000000480 INF: Z Motor: MoveAbsStepped took 43 ms (did NOT wait for settling yet))
17-03-18 04:03:36.634 -07 000000487 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:03:36.634 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 119. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1710, R2=1777, Total=3487. Warn if over 250 bubbles per interval.
17-03-18 04:03:36.634 -07 000000611 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 402 ms.
17-03-18 04:03:36.634 -07 000000437 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 402 ms.
17-03-18 04:03:36.634 -07 000000611 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 04:03:36.634 -07 000000611 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:03:36.634 -07 000000437 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-18 04:03:36.634 -07 000000437 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:03:36.644 -07 000000611 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:03:36.644 -07 000000611 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 410 ms.
17-03-18 04:03:36.644 -07 000000437 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:03:36.644 -07 000000437 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-18 04:03:36.654 -07 000000444 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:03:36.654 -07 000000455 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 04:03:36.844 -07 000000455 INF: FPGA: Recv YMVTILE
17-03-18 04:03:36.854 -07 000000561 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 369 ms to get response, and 395 ms overall
17-03-18 04:03:36.894 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:03:36.904 -07 000000608 INF: FPGA: Recv YRDPOS 143078
17-03-18 04:03:36.904 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 04:03:36.904 -07 000000561 INF: Y Motor: Encoder = 143078 = motor step 111779.7 = 69.8623 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:03:36.904 -07 000000561 INF: Y Motor: Position error before settling (table move) = -21 encoder counts (-0.010 mm)
17-03-18 04:03:36.904 -07 000000561 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 396 ms, distance = 0.846 mm, average velocity = 2.137 mm/sec
17-03-18 04:03:37.854 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:03:37.854 -07 000000611 INF: FPGA: Recv YRDPOS 143079
17-03-18 04:03:37.864 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:03:37.864 -07 000000561 INF: Y Motor: Encoder = 143079 = motor step 111780.5 = 69.8628 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:03:37.904 -07 000000561 INF: Y Motor: After move to 69.872612, error = -0.009819, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:03:37.904 -07 000000561 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 04:03:37.904 -07 000000561 INF: Y Motor: Moved to 69.8628 after 1476 ms (table move)
17-03-18 04:03:37.904 -07 000000590 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174200 mm (DAC = 38054)
17-03-18 04:03:37.904 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:37.914 -07 000000480 INF: FPGA: Recv ZSGSRD 36408
17-03-18 04:03:37.914 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 04:03:37.914 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:37.914 -07 000000611 INF: FPGA: Recv ZSGSRD 36406
17-03-18 04:03:37.924 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 04:03:37.924 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:37.924 -07 000000618 INF: FPGA: Recv ZSGSRD 36400
17-03-18 04:03:37.934 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:37.934 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:37.934 -07 000000444 INF: FPGA: Recv ZSGSRD 36403
17-03-18 04:03:37.944 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:37.944 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:37.944 -07 000000579 INF: FPGA: Recv ZSGSRD 36405
17-03-18 04:03:37.954 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:37.954 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:37.954 -07 000000611 INF: FPGA: Recv ZSGSRD 36403
17-03-18 04:03:37.964 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:37.964 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:37.964 -07 000000437 INF: FPGA: Recv ZSGSRD 36411
17-03-18 04:03:37.974 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:37.974 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:37.974 -07 000000608 INF: FPGA: Recv ZSGSRD 36405
17-03-18 04:03:37.984 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:37.984 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:37.984 -07 000000579 INF: FPGA: Recv ZSGSRD 36407
17-03-18 04:03:37.994 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:37.994 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:37.994 -07 000000625 INF: FPGA: Recv ZSGSRD 36409
17-03-18 04:03:38.004 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:38.004 -07 000000590 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:03:38.004 -07 000000618 INF: FPGA: Recv ZPIEZORD 32443
17-03-18 04:03:38.014 -07 000000590 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:38.014 -07 000000590 INF: Z Motor: Piezo is near 49.3 V (nominally 0 to 100 V), expect near 58.1 V, since DAC is at 5.807 V. Piezo Error = -8.8 V.
17-03-18 04:03:38.014 -07 000000590 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.2 um, Read 10 ADC samples: Avg = 36406 (-173.3 uncal um), Error = 0.9 uncal um, Median = 36406 (-173.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 36400 (-173.3 uncal um), Max = 36411 (-173.4 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 04:03:38.014 -07 000000590 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36406, posNoise = 5, negNoise = 6
17-03-18 04:03:38.014 -07 000000590 INF: Z Motor: After move to -0.174200, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:03:38.014 -07 000000590 INF: Z Motor: Settle wait time = 1481 ms, measure time = 102 ms (allowed 150 ms), total time = 1583 ms
17-03-18 04:03:38.014 -07 000000590 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-18 04:03:38.064 -07 000000590 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1635 ms
17-03-18 04:03:38.064 -07 000000590 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:03:38.064 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:03:38.064 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:03:38.064 -07 000000487 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:03:38.064 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:03:38.064 -07 000000579 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:03:38.064 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:03:38.064 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 04:03:38.064 -07 000000579 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:03:38.074 -07 000000579 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 04:03:38.074 -07 000000579 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:03:38.074 -07 000000579 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 04:03:38.074 -07 000000579 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-18 04:03:38.084 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:03:38.124 -07 000000590 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:03:38.424 -07 000000512 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:03:38.424 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:03:38.424 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:03:38.424 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 619685872, 0x0, 559484976) start.
17-03-18 04:03:38.464 -07 000000487 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:03:38.464 -07 000000608 INF: FPGA: Recv CAMSNAP
17-03-18 04:03:38.464 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 04:03:38.544 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 619685872, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 04:03:38.544 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:03:38.544 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 04:03:38.544 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 04:03:38.564 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:03:38.564 -07 000000444 INF: Autofocus start
17-03-18 04:03:38.564 -07 000000444 INF: MeasureProfile start
17-03-18 04:03:38.564 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:03:38.574 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 04:03:38.574 -07 000000512 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:03:38.584 -07 000000444 INF: MeasureProfile done
17-03-18 04:03:38.584 -07 000000444 INF: X=32  Z correction [um]=0.09220707
17-03-18 04:03:38.584 -07 000000444 INF: Autofocus finished
17-03-18 04:03:38.774 -07 000000501 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:03:38.774 -07 000000512 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 195 ms to get response, and 204 ms overall
17-03-18 04:03:38.774 -07 000000610 INF: ------------ Scan Snapping tile 13 at Y-position 69.86279296875, Z-position -0.174203219244084. ----------
17-03-18 04:03:38.784 -07 000000610 INF: Cycle	120	Tile	13	Exposure Settings		A	414	G	199	T	199	C	414
17-03-18 04:03:38.784 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36586, sync = True, waitForSettling = True)
17-03-18 04:03:38.784 -07 000000610 INF: Z Motor: Moving to -0.167480 mm, started at -0.174203 mm, distance = 6.72 um
17-03-18 04:03:38.784 -07 000000610 INF: FPGA: Xmit ZDACW 36586\n [Z Motor]
17-03-18 04:03:38.784 -07 000000618 INF: FPGA: Recv ZDACW
17-03-18 04:03:38.794 -07 000000610 INF: FPGA: 'ZDACW 36586' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:03:38.794 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:03:38.794 -07 000000625 INF: FPGA: Recv ZDACR 36586
17-03-18 04:03:38.804 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:38.804 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:03:38.954 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:38.954 -07 000000012 INF: FPGA: Recv ZSGSRD 35358
17-03-18 04:03:38.964 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:03:38.964 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:38.964 -07 000000608 INF: FPGA: Recv ZSGSRD 35360
17-03-18 04:03:38.974 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:38.974 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:38.974 -07 000000618 INF: FPGA: Recv ZSGSRD 35358
17-03-18 04:03:38.984 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:38.984 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:38.984 -07 000000487 INF: FPGA: Recv ZSGSRD 35355
17-03-18 04:03:38.994 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:38.994 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:38.994 -07 000000437 INF: FPGA: Recv ZSGSRD 35359
17-03-18 04:03:39.004 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:39.004 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:39.004 -07 000000444 INF: FPGA: Recv ZSGSRD 35362
17-03-18 04:03:39.014 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:39.014 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:39.014 -07 000000590 INF: FPGA: Recv ZSGSRD 35366
17-03-18 04:03:39.024 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:39.024 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:39.024 -07 000000501 INF: FPGA: Recv ZSGSRD 35359
17-03-18 04:03:39.034 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:39.034 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:39.034 -07 000000455 INF: FPGA: Recv ZSGSRD 35353
17-03-18 04:03:39.044 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:39.044 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:39.044 -07 000000608 INF: FPGA: Recv ZSGSRD 35360
17-03-18 04:03:39.054 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:39.054 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:03:39.054 -07 000000590 INF: FPGA: Recv ZPIEZORD 31042
17-03-18 04:03:39.064 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:39.064 -07 000000610 INF: Z Motor: Piezo is near 46.3 V (nominally 0 to 100 V), expect near 55.8 V, since DAC is at 5.583 V. Piezo Error = -9.5 V.
17-03-18 04:03:39.064 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.5 um, Read 10 ADC samples: Avg = 35359 (-166.6 uncal um), Error = 0.9 uncal um, Median = 35359 (-166.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 35353 (-166.6 uncal um), Max = 35366 (-166.7 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 04:03:39.064 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35359, posNoise = 7, negNoise = 6
17-03-18 04:03:39.064 -07 000000610 INF: Z Motor: After move to -0.167480, error = 0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:03:39.064 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-18 04:03:39.064 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:03:39.064 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:03:39.064 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:03:39.064 -07 000000611 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:03:39.064 -07 000000579 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:03:39.064 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:03:39.064 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:03:39.064 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:03:39.064 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-18 04:03:39.064 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:03:39.064 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 04:03:39.064 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:03:39.074 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-18 04:03:39.074 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:03:39.074 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-18 04:03:39.074 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:03:39.084 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 04:03:39.084 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 17 ms.
17-03-18 04:03:39.084 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 11 ms.
17-03-18 04:03:39.084 -07 000000579 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 19 ms.
17-03-18 04:03:39.084 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 414 414 199 199 36763 150\n [Camera]
17-03-18 04:03:39.284 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:03:39.704 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 606
17-03-18 04:03:39.704 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 606
17-03-18 04:03:39.704 -07 000000487 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:03:39.704 -07 000000487 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:03:39.704 -07 000000487 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) start.
17-03-18 04:03:39.704 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 606
17-03-18 04:03:39.704 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 606
17-03-18 04:03:39.704 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:03:39.704 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:03:39.704 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 04:03:39.894 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36763 800
17-03-18 04:03:40.044 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning grn on 949
17-03-18 04:03:40.104 -07 000000487 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) end. Duration was 395 ms.
17-03-18 04:03:40.104 -07 000000487 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 04:03:40.104 -07 000000487 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:03:40.104 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 396 ms.
17-03-18 04:03:40.104 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-18 04:03:40.104 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:03:40.104 -07 000000487 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 04:03:40.104 -07 000000487 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 04:03:40.104 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:03:40.114 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 408 ms.
17-03-18 04:03:40.244 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1148
17-03-18 04:03:40.244 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1148
17-03-18 04:03:40.244 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:03:40.244 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:03:40.244 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-18 04:03:40.244 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1148
17-03-18 04:03:40.244 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1148
17-03-18 04:03:40.244 -07 000000437 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:03:40.244 -07 000000437 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:03:40.244 -07 000000437 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-18 04:03:40.434 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP 1341
17-03-18 04:03:40.434 -07 000000625 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:03:40.434 -07 000000610 INF: FPGA: 'CAMDBLSNAP 414 414 199 199 36763 150' command took 2 ms to send, 1336 ms to get response, and 1348 ms overall
17-03-18 04:03:40.434 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 04:03:40.434 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 14 at Y-position 69.86279296875, Z-Position -0.167477069131661. ------
17-03-18 04:03:40.444 -07 000000561 INF: Y Motor: MoveYZ optimized starting. Moving Y to 70.7026 mm, moving Z to -0.17394 mm
17-03-18 04:03:40.444 -07 000000561 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:03:40.444 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:03:40.444 -07 000000487 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:03:40.444 -07 000000501 INF: Z Motor: Entering MoveAbsStepped (DAC = 37996, sync = True, waitForSettling = False)
17-03-18 04:03:40.444 -07 000000501 INF: Z Motor: Moving to -0.173935 mm, started at -0.167477 mm, distance = -6.46 um
17-03-18 04:03:40.444 -07 000000480 INF: Y Motor: Entering MoveAbsStepped (target = 113124 steps, sync = True, waitForSettling = True)
17-03-18 04:03:40.444 -07 000000480 INF: Y Motor: Moving to 70.7026 mm, started at 69.8628 mm, delta = 0.8398 mm
17-03-18 04:03:40.454 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:03:40.454 -07 000000501 INF: FPGA: Xmit ZDACW 37996\n [Z Motor]
17-03-18 04:03:40.454 -07 000000012 INF: FPGA: Recv ZDACW
17-03-18 04:03:40.464 -07 000000501 INF: FPGA: 'ZDACW 37996' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:03:40.464 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:03:40.464 -07 000000455 INF: FPGA: Recv YRDPOS 143079
17-03-18 04:03:40.474 -07 000000512 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:03:40.474 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 20 ms overall
17-03-18 04:03:40.474 -07 000000480 INF: Y Motor: Encoder = 143079 = motor step 111780.5 = 69.8628 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:03:40.474 -07 000000480 INF: Y Motor: Last commanded position = 69.8726 mm (111796.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:03:40.474 -07 000000480 INF: Y Motor: Moving 1344 steps-21
17-03-18 04:03:40.484 -07 000000501 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:03:40.484 -07 000000608 INF: FPGA: Recv ZDACR 37996
17-03-18 04:03:40.494 -07 000000480 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:03:40.494 -07 000000501 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 04:03:40.494 -07 000000501 INF: Z Motor: MoveAbsStepped took 41 ms (did NOT wait for settling yet))
17-03-18 04:03:40.644 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 401 ms.
17-03-18 04:03:40.644 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 04:03:40.644 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:03:40.644 -07 000000437 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 400 ms.
17-03-18 04:03:40.644 -07 000000437 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 04:03:40.644 -07 000000437 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:03:40.654 -07 000000437 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:03:40.654 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 04:03:40.654 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 410 ms.
17-03-18 04:03:40.664 -07 000000437 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-18 04:03:40.674 -07 000000625 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:03:40.674 -07 000000512 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 195 ms to get response, and 225 ms overall
17-03-18 04:03:40.864 -07 000000611 INF: FPGA: Recv YMVTILE
17-03-18 04:03:40.864 -07 000000480 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 369 ms to get response, and 398 ms overall
17-03-18 04:03:40.914 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:03:40.924 -07 000000611 INF: FPGA: Recv YRDPOS 144769
17-03-18 04:03:40.924 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 04:03:40.924 -07 000000480 INF: Y Motor: Encoder = 144769 = motor step 113100.8 = 70.6880 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:03:40.924 -07 000000480 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-18 04:03:40.924 -07 000000480 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 399 ms, distance = 0.840 mm, average velocity = 2.105 mm/sec
17-03-18 04:03:41.594 -07 000000618 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 120, FrontChillerTemperature: 3.985358,
17-03-18 04:03:41.634 -07 000000608 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:03:41.634 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 119. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1710, R2=1777, Total=3487. Warn if over 250 bubbles per interval.
17-03-18 04:03:41.874 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:03:41.874 -07 000000512 INF: FPGA: Recv YRDPOS 144769
17-03-18 04:03:41.884 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:03:41.884 -07 000000480 INF: Y Motor: Encoder = 144769 = motor step 113100.8 = 70.6880 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:03:41.914 -07 000000480 INF: Y Motor: After move to 70.702606, error = -0.014618, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:03:41.914 -07 000000480 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:03:41.914 -07 000000480 INF: Y Motor: Moved to 70.6880 after 1462 ms (table move)
17-03-18 04:03:41.914 -07 000000561 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173935 mm (DAC = 37996)
17-03-18 04:03:41.914 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:41.914 -07 000000611 INF: FPGA: Recv ZSGSRD 36365
17-03-18 04:03:41.924 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 04:03:41.924 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:41.924 -07 000000480 INF: FPGA: Recv ZSGSRD 36366
17-03-18 04:03:41.934 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:41.934 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:41.934 -07 000000487 INF: FPGA: Recv ZSGSRD 36361
17-03-18 04:03:41.944 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:41.944 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:41.944 -07 000000579 INF: FPGA: Recv ZSGSRD 36364
17-03-18 04:03:41.954 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:41.954 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:41.954 -07 000000611 INF: FPGA: Recv ZSGSRD 36359
17-03-18 04:03:41.964 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:41.964 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:41.964 -07 000000455 INF: FPGA: Recv ZSGSRD 36360
17-03-18 04:03:41.974 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:41.974 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:41.974 -07 000000487 INF: FPGA: Recv ZSGSRD 36366
17-03-18 04:03:41.984 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:41.984 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:41.984 -07 000000579 INF: FPGA: Recv ZSGSRD 36366
17-03-18 04:03:41.994 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:41.994 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:41.994 -07 000000012 INF: FPGA: Recv ZSGSRD 36359
17-03-18 04:03:42.004 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:42.004 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:42.004 -07 000000512 INF: FPGA: Recv ZSGSRD 36367
17-03-18 04:03:42.014 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:42.014 -07 000000561 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:03:42.014 -07 000000487 INF: FPGA: Recv ZPIEZORD 32422
17-03-18 04:03:42.024 -07 000000561 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:42.024 -07 000000561 INF: Z Motor: Piezo is near 49.3 V (nominally 0 to 100 V), expect near 58.0 V, since DAC is at 5.798 V. Piezo Error = -8.7 V.
17-03-18 04:03:42.024 -07 000000561 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.9 um, Read 10 ADC samples: Avg = 36363 (-173.0 uncal um), Error = 0.9 uncal um, Median = 36364 (-173.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 36359 (-173.0 uncal um), Max = 36367 (-173.1 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 04:03:42.024 -07 000000561 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36363, posNoise = 4, negNoise = 4
17-03-18 04:03:42.024 -07 000000561 INF: Z Motor: After move to -0.173935, error = 0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:03:42.024 -07 000000561 INF: Z Motor: Settle wait time = 1467 ms, measure time = 104 ms (allowed 150 ms), total time = 1571 ms
17-03-18 04:03:42.024 -07 000000561 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-18 04:03:42.074 -07 000000561 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1626 ms
17-03-18 04:03:42.074 -07 000000561 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:03:42.074 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:03:42.074 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:03:42.074 -07 000000455 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:03:42.074 -07 000000611 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:03:42.074 -07 000000012 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:03:42.074 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:03:42.074 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:03:42.074 -07 000000012 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:03:42.084 -07 000000012 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 04:03:42.084 -07 000000012 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:03:42.084 -07 000000012 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 04:03:42.084 -07 000000012 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 04:03:42.094 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:03:42.134 -07 000000012 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:03:42.434 -07 000000455 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:03:42.434 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:03:42.434 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:03:42.434 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2404012176, 0x0, 559484976) start.
17-03-18 04:03:42.474 -07 000000512 INF: FPGA: Recv @CAMSNAP 381
17-03-18 04:03:42.474 -07 000000487 INF: FPGA: Recv CAMSNAP
17-03-18 04:03:42.474 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 385 ms overall
17-03-18 04:03:42.554 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2404012176, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 04:03:42.554 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:03:42.554 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 04:03:42.554 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 116 ms.
17-03-18 04:03:42.574 -07 000000561 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:03:42.574 -07 000000512 INF: Autofocus start
17-03-18 04:03:42.574 -07 000000512 INF: MeasureProfile start
17-03-18 04:03:42.574 -07 000000608 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:03:42.584 -07 000000561 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 04:03:42.584 -07 000000561 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:03:42.594 -07 000000512 INF: MeasureProfile done
17-03-18 04:03:42.594 -07 000000512 INF: X=16  Z correction [um]=0.01042744
17-03-18 04:03:42.594 -07 000000512 INF: Autofocus finished
17-03-18 04:03:42.784 -07 000000444 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:03:42.784 -07 000000561 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:03:42.784 -07 000000610 INF: ------------ Scan Snapping tile 14 at Y-position 70.68798828125, Z-position -0.173926978121989. ----------
17-03-18 04:03:42.794 -07 000000610 INF: Cycle	120	Tile	14	Exposure Settings		A	414	G	199	T	199	C	414
17-03-18 04:03:42.794 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36511, sync = True, waitForSettling = True)
17-03-18 04:03:42.794 -07 000000610 INF: Z Motor: Moving to -0.167137 mm, started at -0.173927 mm, distance = 6.79 um
17-03-18 04:03:42.794 -07 000000610 INF: FPGA: Xmit ZDACW 36511\n [Z Motor]
17-03-18 04:03:42.794 -07 000000618 INF: FPGA: Recv ZDACW
17-03-18 04:03:42.804 -07 000000610 INF: FPGA: 'ZDACW 36511' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 04:03:42.804 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:03:42.804 -07 000000501 INF: FPGA: Recv ZDACR 36511
17-03-18 04:03:42.814 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:42.814 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:03:42.964 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:42.964 -07 000000487 INF: FPGA: Recv ZSGSRD 35310
17-03-18 04:03:42.974 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:03:42.974 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:42.974 -07 000000455 INF: FPGA: Recv ZSGSRD 35309
17-03-18 04:03:42.984 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:42.984 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:42.984 -07 000000480 INF: FPGA: Recv ZSGSRD 35312
17-03-18 04:03:42.994 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:42.994 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:42.994 -07 000000501 INF: FPGA: Recv ZSGSRD 35302
17-03-18 04:03:43.004 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:43.004 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:43.004 -07 000000611 INF: FPGA: Recv ZSGSRD 35305
17-03-18 04:03:43.014 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:43.014 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:43.014 -07 000000012 INF: FPGA: Recv ZSGSRD 35312
17-03-18 04:03:43.024 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:43.024 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:43.024 -07 000000579 INF: FPGA: Recv ZSGSRD 35308
17-03-18 04:03:43.034 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:43.034 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:43.034 -07 000000487 INF: FPGA: Recv ZSGSRD 35306
17-03-18 04:03:43.044 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:43.044 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:43.044 -07 000000618 INF: FPGA: Recv ZSGSRD 35306
17-03-18 04:03:43.054 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:43.054 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:43.054 -07 000000625 INF: FPGA: Recv ZSGSRD 35310
17-03-18 04:03:43.064 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:43.064 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:03:43.064 -07 000000480 INF: FPGA: Recv ZPIEZORD 30978
17-03-18 04:03:43.074 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:43.074 -07 000000610 INF: Z Motor: Piezo is near 46.2 V (nominally 0 to 100 V), expect near 55.7 V, since DAC is at 5.571 V. Piezo Error = -9.5 V.
17-03-18 04:03:43.074 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.1 um, Read 10 ADC samples: Avg = 35308 (-166.3 uncal um), Error = 0.9 uncal um, Median = 35308 (-166.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35302 (-166.2 uncal um), Max = 35312 (-166.3 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 04:03:43.074 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35308, posNoise = 4, negNoise = 6
17-03-18 04:03:43.074 -07 000000610 INF: Z Motor: After move to -0.167137, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:03:43.074 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 04:03:43.074 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:03:43.074 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:03:43.074 -07 000000444 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:03:43.074 -07 000000437 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:03:43.074 -07 000000487 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:03:43.074 -07 000000487 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:03:43.074 -07 000000455 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:03:43.074 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:03:43.074 -07 000000487 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:03:43.074 -07 000000487 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:03:43.074 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:03:43.074 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:03:43.084 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 04:03:43.084 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:03:43.084 -07 000000487 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 04:03:43.084 -07 000000487 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:03:43.084 -07 000000487 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 04:03:43.084 -07 000000487 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 04:03:43.084 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 04:03:43.094 -07 000000455 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 04:03:43.094 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 414 414 199 199 36688 150\n [Camera]
17-03-18 04:03:43.294 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:03:43.704 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 606
17-03-18 04:03:43.704 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 606
17-03-18 04:03:43.704 -07 000000487 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:03:43.704 -07 000000487 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:03:43.704 -07 000000487 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-18 04:03:43.704 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 606
17-03-18 04:03:43.704 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 606
17-03-18 04:03:43.714 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:03:43.714 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:03:43.714 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-18 04:03:43.894 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36688 799
17-03-18 04:03:44.044 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning grn on 949
17-03-18 04:03:44.104 -07 000000487 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 392 ms.
17-03-18 04:03:44.104 -07 000000487 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-18 04:03:44.104 -07 000000487 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:03:44.104 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 390 ms.
17-03-18 04:03:44.104 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-18 04:03:44.104 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:03:44.104 -07 000000487 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:03:44.104 -07 000000487 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 04:03:44.104 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:03:44.114 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-18 04:03:44.244 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1148
17-03-18 04:03:44.244 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1148
17-03-18 04:03:44.244 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:03:44.244 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:03:44.244 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-18 04:03:44.254 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1148
17-03-18 04:03:44.254 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1148
17-03-18 04:03:44.254 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:03:44.254 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:03:44.254 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2684358704, 0x0, 418435064) start.
17-03-18 04:03:44.434 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP 1340
17-03-18 04:03:44.444 -07 000000561 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:03:44.444 -07 000000610 INF: FPGA: 'CAMDBLSNAP 414 414 199 199 36688 150' command took 2 ms to send, 1340 ms to get response, and 1347 ms overall
17-03-18 04:03:44.444 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 04:03:44.444 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 15 at Y-position 70.68798828125, Z-Position -0.167149434312431. ------
17-03-18 04:03:44.444 -07 000000437 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:03:44.444 -07 000000455 INF: Y Motor: MoveYZ optimized starting. Moving Y to 71.5326 mm, moving Z to -0.17381 mm
17-03-18 04:03:44.444 -07 000000455 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:03:44.444 -07 000000487 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:03:44.444 -07 000000618 INF: Y Motor: Entering MoveAbsStepped (target = 114452 steps, sync = True, waitForSettling = True)
17-03-18 04:03:44.454 -07 000000618 INF: Y Motor: Moving to 71.5326 mm, started at 70.6880 mm, delta = 0.8446 mm
17-03-18 04:03:44.454 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:03:44.454 -07 000000437 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 04:03:44.454 -07 000000501 INF: Z Motor: Entering MoveAbsStepped (DAC = 37968, sync = True, waitForSettling = False)
17-03-18 04:03:44.454 -07 000000501 INF: Z Motor: Moving to -0.173806 mm, started at -0.167149 mm, distance = -6.66 um
17-03-18 04:03:44.454 -07 000000561 INF: FPGA: Recv YRDPOS 144769
17-03-18 04:03:44.464 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:44.464 -07 000000618 INF: Y Motor: Encoder = 144769 = motor step 113100.8 = 70.6880 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:03:44.464 -07 000000618 INF: Y Motor: Last commanded position = 70.7026 mm (113124.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:03:44.464 -07 000000618 INF: Y Motor: Moving 1351 steps-30
17-03-18 04:03:44.464 -07 000000501 INF: FPGA: Xmit ZDACW 37968\n [Z Motor]
17-03-18 04:03:44.464 -07 000000579 INF: FPGA: Recv ZDACW
17-03-18 04:03:44.474 -07 000000501 INF: FPGA: 'ZDACW 37968' command took 1 ms to send, 0 ms to get response, and 18 ms overall
17-03-18 04:03:44.474 -07 000000437 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:03:44.484 -07 000000618 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:03:44.494 -07 000000501 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:03:44.494 -07 000000487 INF: FPGA: Recv ZDACR 37968
17-03-18 04:03:44.504 -07 000000501 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 04:03:44.504 -07 000000501 INF: Z Motor: MoveAbsStepped took 49 ms (did NOT wait for settling yet))
17-03-18 04:03:44.644 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2684358704, 0x0, 418435064) end. Duration was 390 ms.
17-03-18 04:03:44.644 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-18 04:03:44.644 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:03:44.644 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 396 ms.
17-03-18 04:03:44.644 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 04:03:44.644 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:03:44.644 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:03:44.654 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 04:03:44.654 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 04:03:44.654 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 04:03:44.674 -07 000000501 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:03:44.674 -07 000000437 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 222 ms overall
17-03-18 04:03:44.854 -07 000000590 INF: FPGA: Recv YMVTILE
17-03-18 04:03:44.854 -07 000000618 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 04:03:44.904 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:03:44.914 -07 000000012 INF: FPGA: Recv YRDPOS 146469
17-03-18 04:03:44.914 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 04:03:44.914 -07 000000618 INF: Y Motor: Encoder = 146469 = motor step 114428.9 = 71.5181 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:03:44.914 -07 000000618 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-18 04:03:44.914 -07 000000618 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.845 mm, average velocity = 2.128 mm/sec
17-03-18 04:03:45.864 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:03:45.864 -07 000000437 INF: FPGA: Recv YRDPOS 146470
17-03-18 04:03:45.874 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:03:45.874 -07 000000618 INF: Y Motor: Encoder = 146470 = motor step 114429.7 = 71.5186 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:03:45.904 -07 000000618 INF: Y Motor: After move to 71.532608, error = -0.014053, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:03:45.904 -07 000000618 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 04:03:45.904 -07 000000618 INF: Y Motor: Moved to 71.5186 after 1450 ms (table move)
17-03-18 04:03:45.904 -07 000000455 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173806 mm (DAC = 37968)
17-03-18 04:03:45.904 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:45.904 -07 000000487 INF: FPGA: Recv ZSGSRD 36344
17-03-18 04:03:45.914 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 04:03:45.914 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:45.914 -07 000000444 INF: FPGA: Recv ZSGSRD 36345
17-03-18 04:03:45.924 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:03:45.924 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:45.924 -07 000000625 INF: FPGA: Recv ZSGSRD 36342
17-03-18 04:03:45.934 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:45.934 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:45.934 -07 000000487 INF: FPGA: Recv ZSGSRD 36351
17-03-18 04:03:45.944 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:45.944 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:45.944 -07 000000437 INF: FPGA: Recv ZSGSRD 36350
17-03-18 04:03:45.954 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:45.954 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:45.954 -07 000000480 INF: FPGA: Recv ZSGSRD 36340
17-03-18 04:03:45.964 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:45.964 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:45.964 -07 000000608 INF: FPGA: Recv ZSGSRD 36343
17-03-18 04:03:45.974 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:45.974 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:45.974 -07 000000579 INF: FPGA: Recv ZSGSRD 36342
17-03-18 04:03:45.984 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:45.984 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:45.984 -07 000000590 INF: FPGA: Recv ZSGSRD 36343
17-03-18 04:03:45.994 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:45.994 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:45.994 -07 000000501 INF: FPGA: Recv ZSGSRD 36344
17-03-18 04:03:46.004 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:46.004 -07 000000455 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:03:46.004 -07 000000608 INF: FPGA: Recv ZPIEZORD 32381
17-03-18 04:03:46.014 -07 000000455 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:46.014 -07 000000455 INF: Z Motor: Piezo is near 49.2 V (nominally 0 to 100 V), expect near 57.9 V, since DAC is at 5.794 V. Piezo Error = -8.8 V.
17-03-18 04:03:46.014 -07 000000455 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.8 um, Read 10 ADC samples: Avg = 36344 (-172.9 uncal um), Error = 0.9 uncal um, Median = 36344 (-172.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 36340 (-172.9 uncal um), Max = 36351 (-173.0 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 04:03:46.014 -07 000000455 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36344, posNoise = 7, negNoise = 4
17-03-18 04:03:46.014 -07 000000455 INF: Z Motor: After move to -0.173806, error = 0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:03:46.014 -07 000000455 INF: Z Motor: Settle wait time = 1453 ms, measure time = 106 ms (allowed 150 ms), total time = 1559 ms
17-03-18 04:03:46.014 -07 000000455 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-18 04:03:46.064 -07 000000455 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1614 ms
17-03-18 04:03:46.064 -07 000000455 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:03:46.064 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:03:46.064 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:03:46.064 -07 000000611 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:03:46.064 -07 000000487 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:03:46.064 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:03:46.064 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:03:46.064 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:03:46.064 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:03:46.074 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 04:03:46.074 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:03:46.074 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 04:03:46.074 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-18 04:03:46.084 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:03:46.124 -07 000000480 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:03:46.424 -07 000000487 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:03:46.424 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:03:46.424 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:03:46.424 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2539065104, 0x0, 559484976) start.
17-03-18 04:03:46.464 -07 000000012 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:03:46.464 -07 000000512 INF: FPGA: Recv CAMSNAP
17-03-18 04:03:46.464 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 04:03:46.544 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2539065104, 0x0, 559484976) end. Duration was 117 ms.
17-03-18 04:03:46.544 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:03:46.544 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 04:03:46.544 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-18 04:03:46.564 -07 000000455 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:03:46.564 -07 000000618 INF: Autofocus start
17-03-18 04:03:46.564 -07 000000618 INF: MeasureProfile start
17-03-18 04:03:46.564 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:03:46.574 -07 000000455 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 04:03:46.574 -07 000000455 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:03:46.584 -07 000000618 INF: MeasureProfile done
17-03-18 04:03:46.584 -07 000000618 INF: X=16  Z correction [um]=0.01042744
17-03-18 04:03:46.584 -07 000000618 INF: Autofocus finished
17-03-18 04:03:46.634 -07 000000487 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:03:46.634 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 119. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1710, R2=1777, Total=3487. Warn if over 250 bubbles per interval.
17-03-18 04:03:46.774 -07 000000561 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:03:46.774 -07 000000455 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:03:46.774 -07 000000610 INF: ------------ Scan Snapping tile 15 at Y-position 71.5185546875, Z-position -0.173804918091295. ----------
17-03-18 04:03:46.774 -07 000000610 INF: Cycle	120	Tile	15	Exposure Settings		A	414	G	199	T	199	C	414
17-03-18 04:03:46.784 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36483, sync = True, waitForSettling = True)
17-03-18 04:03:46.784 -07 000000610 INF: Z Motor: Moving to -0.167008 mm, started at -0.173805 mm, distance = 6.80 um
17-03-18 04:03:46.784 -07 000000610 INF: FPGA: Xmit ZDACW 36483\n [Z Motor]
17-03-18 04:03:46.784 -07 000000561 INF: FPGA: Recv ZDACW
17-03-18 04:03:46.794 -07 000000610 INF: FPGA: 'ZDACW 36483' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 04:03:46.794 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:03:46.794 -07 000000512 INF: FPGA: Recv ZDACR 36483
17-03-18 04:03:46.804 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:46.804 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:03:46.954 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:46.954 -07 000000437 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 120, FrontChillerTemperature: 3.993549,
17-03-18 04:03:46.954 -07 000000625 INF: FPGA: Recv ZSGSRD 35291
17-03-18 04:03:46.964 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:46.984 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:46.984 -07 000000444 INF: FPGA: Recv ZSGSRD 35284
17-03-18 04:03:46.994 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 04:03:47.004 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:47.004 -07 000000625 INF: FPGA: Recv ZSGSRD 35285
17-03-18 04:03:47.014 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 04:03:47.024 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:47.024 -07 000000618 INF: FPGA: Recv ZSGSRD 35291
17-03-18 04:03:47.034 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 04:03:47.034 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:47.034 -07 000000608 INF: FPGA: Recv ZSGSRD 35288
17-03-18 04:03:47.044 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:47.044 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:47.044 -07 000000480 INF: FPGA: Recv ZSGSRD 35287
17-03-18 04:03:47.054 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:47.054 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:47.054 -07 000000487 INF: FPGA: Recv ZSGSRD 35285
17-03-18 04:03:47.064 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:47.064 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:47.064 -07 000000618 INF: FPGA: Recv ZSGSRD 35289
17-03-18 04:03:47.074 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:47.074 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:47.074 -07 000000608 INF: FPGA: Recv ZSGSRD 35287
17-03-18 04:03:47.084 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:47.084 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:47.084 -07 000000480 INF: FPGA: Recv ZSGSRD 35291
17-03-18 04:03:47.094 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:47.094 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:03:47.094 -07 000000590 INF: FPGA: Recv ZPIEZORD 30967
17-03-18 04:03:47.104 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:47.104 -07 000000610 INF: Z Motor: Piezo is near 46.2 V (nominally 0 to 100 V), expect near 55.7 V, since DAC is at 5.567 V. Piezo Error = -9.5 V.
17-03-18 04:03:47.104 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.0 um, Read 10 ADC samples: Avg = 35288 (-166.2 uncal um), Error = 0.9 uncal um, Median = 35288 (-166.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 35284 (-166.1 uncal um), Max = 35291 (-166.2 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 04:03:47.104 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35288, posNoise = 3, negNoise = 4
17-03-18 04:03:47.104 -07 000000610 INF: Z Motor: After move to -0.167008, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:03:47.104 -07 000000610 INF: Z Motor: MoveAbsStepped took 319 ms)
17-03-18 04:03:47.104 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:03:47.104 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:03:47.104 -07 000000455 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:03:47.104 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:03:47.104 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:03:47.104 -07 000000437 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:03:47.104 -07 000000625 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:03:47.104 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:03:47.104 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:03:47.104 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:03:47.104 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:03:47.104 -07 000000625 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:03:47.114 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 04:03:47.114 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:03:47.114 -07 000000625 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 04:03:47.114 -07 000000625 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:03:47.124 -07 000000625 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-18 04:03:47.124 -07 000000625 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 04:03:47.124 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 11 ms.
17-03-18 04:03:47.124 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 17 ms.
17-03-18 04:03:47.124 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 414 414 199 199 36659 150\n [Camera]
17-03-18 04:03:47.324 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:03:47.734 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 606
17-03-18 04:03:47.744 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 606
17-03-18 04:03:47.744 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:03:47.744 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:03:47.744 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 2719780968, 0x0, 391868352) start.
17-03-18 04:03:47.744 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 606
17-03-18 04:03:47.744 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 606
17-03-18 04:03:47.744 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:03:47.744 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:03:47.744 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 2755203232, 0x0, 418435064) start.
17-03-18 04:03:47.934 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36659 799
17-03-18 04:03:48.084 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning grn on 949
17-03-18 04:03:48.134 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 2719780968, 0x0, 391868352) end. Duration was 394 ms.
17-03-18 04:03:48.134 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-18 04:03:48.134 -07 000000625 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:03:48.134 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 2755203232, 0x0, 418435064) end. Duration was 393 ms.
17-03-18 04:03:48.134 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-18 04:03:48.134 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:03:48.144 -07 000000625 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:03:48.144 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 04:03:48.144 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:03:48.144 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-18 04:03:48.284 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1148
17-03-18 04:03:48.284 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1148
17-03-18 04:03:48.284 -07 000000487 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:03:48.414 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1148
17-03-18 04:03:48.414 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1148
17-03-18 04:03:48.424 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:03:48.424 -07 000000487 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:03:48.424 -07 000000487 INF: Camera: sBCa_ReadImage(785074288, 2818576432, 0x0, 391868352) start.
17-03-18 04:03:48.424 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:03:48.424 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) start.
17-03-18 04:03:48.474 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP 1340
17-03-18 04:03:48.474 -07 000000012 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:03:48.474 -07 000000610 INF: FPGA: 'CAMDBLSNAP 414 414 199 199 36659 150' command took 2 ms to send, 1343 ms to get response, and 1348 ms overall
17-03-18 04:03:48.474 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 04:03:48.474 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 16 at Y-position 71.5185546875, Z-Position -0.167020950069596. ------
17-03-18 04:03:48.484 -07 000000444 INF: Y Motor: MoveYZ optimized starting. Moving Y to 72.3626 mm, moving Z to -0.17343 mm
17-03-18 04:03:48.484 -07 000000444 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:03:48.484 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:03:48.484 -07 000000611 INF: Y Motor: Entering MoveAbsStepped (target = 115780 steps, sync = True, waitForSettling = True)
17-03-18 04:03:48.484 -07 000000611 INF: Y Motor: Moving to 72.3626 mm, started at 71.5186 mm, delta = 0.8441 mm
17-03-18 04:03:48.484 -07 000000455 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:03:48.484 -07 000000608 INF: Z Motor: Entering MoveAbsStepped (DAC = 37885, sync = True, waitForSettling = False)
17-03-18 04:03:48.484 -07 000000608 INF: Z Motor: Moving to -0.173426 mm, started at -0.167021 mm, distance = -6.41 um
17-03-18 04:03:48.494 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:48.494 -07 000000611 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:03:48.494 -07 000000561 INF: FPGA: Recv YRDPOS 146470
17-03-18 04:03:48.504 -07 000000608 INF: FPGA: Xmit ZDACW 37885\n [Z Motor]
17-03-18 04:03:48.504 -07 000000611 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-18 04:03:48.504 -07 000000611 INF: Y Motor: Encoder = 146470 = motor step 114429.7 = 71.5186 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:03:48.504 -07 000000611 INF: Y Motor: Last commanded position = 71.5326 mm (114452.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:03:48.504 -07 000000611 INF: Y Motor: Moving 1350 steps-30
17-03-18 04:03:48.504 -07 000000618 INF: FPGA: Recv ZDACW
17-03-18 04:03:48.514 -07 000000512 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:03:48.514 -07 000000608 INF: FPGA: 'ZDACW 37885' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-18 04:03:48.524 -07 000000611 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:03:48.534 -07 000000608 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:03:48.534 -07 000000561 INF: FPGA: Recv ZDACR 37885
17-03-18 04:03:48.544 -07 000000608 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 04:03:48.544 -07 000000608 INF: Z Motor: MoveAbsStepped took 55 ms (did NOT wait for settling yet))
17-03-18 04:03:48.714 -07 000000437 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:03:48.714 -07 000000512 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 04:03:48.814 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) end. Duration was 392 ms.
17-03-18 04:03:48.814 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-18 04:03:48.814 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:03:48.814 -07 000000487 INF: Camera: sBCa_ReadImage(785074288, 2818576432, 0x0, 391868352) end. Duration was 397 ms.
17-03-18 04:03:48.814 -07 000000487 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 04:03:48.814 -07 000000487 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:03:48.824 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:03:48.824 -07 000000487 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:03:48.824 -07 000000487 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 539 ms.
17-03-18 04:03:48.834 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-18 04:03:48.894 -07 000000561 INF: FPGA: Recv YMVTILE
17-03-18 04:03:48.894 -07 000000611 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 395 ms overall
17-03-18 04:03:48.944 -07 000000611 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:03:48.944 -07 000000590 INF: FPGA: Recv YRDPOS 148171
17-03-18 04:03:48.954 -07 000000611 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 04:03:48.954 -07 000000611 INF: Y Motor: Encoder = 148171 = motor step 115758.6 = 72.3491 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:03:48.954 -07 000000611 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-18 04:03:48.954 -07 000000611 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.844 mm, average velocity = 2.126 mm/sec
17-03-18 04:03:49.904 -07 000000611 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:03:49.904 -07 000000579 INF: FPGA: Recv YRDPOS 148171
17-03-18 04:03:49.914 -07 000000611 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:03:49.914 -07 000000611 INF: Y Motor: Encoder = 148171 = motor step 115758.6 = 72.3491 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:03:49.934 -07 000000611 INF: Y Motor: After move to 72.362610, error = -0.013489, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:03:49.934 -07 000000611 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:03:49.944 -07 000000611 INF: Y Motor: Moved to 72.3491 after 1456 ms (table move)
17-03-18 04:03:49.944 -07 000000444 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173426 mm (DAC = 37885)
17-03-18 04:03:49.944 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:49.944 -07 000000590 INF: FPGA: Recv ZSGSRD 36291
17-03-18 04:03:49.954 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:03:49.954 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:49.954 -07 000000625 INF: FPGA: Recv ZSGSRD 36290
17-03-18 04:03:49.964 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:49.964 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:49.964 -07 000000512 INF: FPGA: Recv ZSGSRD 36287
17-03-18 04:03:49.974 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:49.974 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:49.974 -07 000000590 INF: FPGA: Recv ZSGSRD 36292
17-03-18 04:03:49.984 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:49.984 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:49.984 -07 000000012 INF: FPGA: Recv ZSGSRD 36289
17-03-18 04:03:49.994 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:03:49.994 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:49.994 -07 000000625 INF: FPGA: Recv ZSGSRD 36283
17-03-18 04:03:50.004 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:50.004 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:50.004 -07 000000455 INF: FPGA: Recv ZSGSRD 36291
17-03-18 04:03:50.014 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:50.014 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:50.014 -07 000000512 INF: FPGA: Recv ZSGSRD 36287
17-03-18 04:03:50.024 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:50.024 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:50.024 -07 000000579 INF: FPGA: Recv ZSGSRD 36289
17-03-18 04:03:50.034 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 04:03:50.034 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:50.034 -07 000000437 INF: FPGA: Recv ZSGSRD 36285
17-03-18 04:03:50.044 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:50.044 -07 000000444 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:03:50.044 -07 000000590 INF: FPGA: Recv ZPIEZORD 32318
17-03-18 04:03:50.054 -07 000000444 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:50.054 -07 000000444 INF: Z Motor: Piezo is near 49.0 V (nominally 0 to 100 V), expect near 57.8 V, since DAC is at 5.781 V. Piezo Error = -8.8 V.
17-03-18 04:03:50.054 -07 000000444 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.4 um, Read 10 ADC samples: Avg = 36288 (-172.6 uncal um), Error = 0.9 uncal um, Median = 36289 (-172.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 36283 (-172.5 uncal um), Max = 36292 (-172.6 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 04:03:50.054 -07 000000444 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36288, posNoise = 4, negNoise = 5
17-03-18 04:03:50.054 -07 000000444 INF: Z Motor: After move to -0.173426, error = -0.000019, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:03:50.054 -07 000000444 INF: Z Motor: Settle wait time = 1459 ms, measure time = 107 ms (allowed 150 ms), total time = 1566 ms
17-03-18 04:03:50.054 -07 000000444 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-18 04:03:50.104 -07 000000444 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1620 ms
17-03-18 04:03:50.104 -07 000000444 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:03:50.104 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:03:50.104 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:03:50.104 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:03:50.104 -07 000000608 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:03:50.104 -07 000000579 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:03:50.104 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:03:50.104 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:03:50.104 -07 000000579 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:03:50.104 -07 000000579 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 04:03:50.104 -07 000000579 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:03:50.114 -07 000000579 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 8 ms.
17-03-18 04:03:50.114 -07 000000579 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-18 04:03:50.124 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:03:50.164 -07 000000480 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:03:50.464 -07 000000487 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:03:50.464 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:03:50.464 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:03:50.464 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2281705520, 0x0, 559484976) start.
17-03-18 04:03:50.504 -07 000000561 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:03:50.504 -07 000000579 INF: FPGA: Recv CAMSNAP
17-03-18 04:03:50.504 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 385 ms overall
17-03-18 04:03:50.584 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2281705520, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 04:03:50.584 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:03:50.584 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 04:03:50.584 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 04:03:50.604 -07 000000590 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:03:50.604 -07 000000625 INF: Autofocus start
17-03-18 04:03:50.604 -07 000000625 INF: MeasureProfile start
17-03-18 04:03:50.604 -07 000000608 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:03:50.614 -07 000000590 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:03:50.614 -07 000000590 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:03:50.614 -07 000000625 INF: MeasureProfile done
17-03-18 04:03:50.614 -07 000000625 INF: X=16  Z correction [um]=0.01042744
17-03-18 04:03:50.614 -07 000000625 INF: Autofocus finished
17-03-18 04:03:50.814 -07 000000487 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:03:50.814 -07 000000590 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 195 ms to get response, and 202 ms overall
17-03-18 04:03:50.814 -07 000000610 INF: ------------ Scan Snapping tile 16 at Y-position 72.34912109375, Z-position -0.173445162211357. ----------
17-03-18 04:03:50.824 -07 000000610 INF: Cycle	120	Tile	16	Exposure Settings		A	414	G	199	T	199	C	414
17-03-18 04:03:50.824 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36400, sync = True, waitForSettling = True)
17-03-18 04:03:50.824 -07 000000610 INF: Z Motor: Moving to -0.166629 mm, started at -0.173445 mm, distance = 6.82 um
17-03-18 04:03:50.824 -07 000000610 INF: FPGA: Xmit ZDACW 36400\n [Z Motor]
17-03-18 04:03:50.824 -07 000000611 INF: FPGA: Recv ZDACW
17-03-18 04:03:50.834 -07 000000610 INF: FPGA: 'ZDACW 36400' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 04:03:50.834 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:03:50.834 -07 000000625 INF: FPGA: Recv ZDACR 36400
17-03-18 04:03:50.844 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:50.844 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:03:50.994 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:50.994 -07 000000625 INF: FPGA: Recv ZSGSRD 35229
17-03-18 04:03:51.004 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:03:51.004 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:51.004 -07 000000590 INF: FPGA: Recv ZSGSRD 35227
17-03-18 04:03:51.014 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:51.014 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:51.014 -07 000000487 INF: FPGA: Recv ZSGSRD 35227
17-03-18 04:03:51.024 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:51.024 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:51.024 -07 000000480 INF: FPGA: Recv ZSGSRD 35226
17-03-18 04:03:51.034 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:51.034 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:51.034 -07 000000625 INF: FPGA: Recv ZSGSRD 35230
17-03-18 04:03:51.044 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:51.044 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:51.044 -07 000000590 INF: FPGA: Recv ZSGSRD 35227
17-03-18 04:03:51.054 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:51.054 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:51.054 -07 000000444 INF: FPGA: Recv ZSGSRD 35231
17-03-18 04:03:51.064 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:51.064 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:51.064 -07 000000455 INF: FPGA: Recv ZSGSRD 35230
17-03-18 04:03:51.074 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:51.074 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:51.074 -07 000000618 INF: FPGA: Recv ZSGSRD 35231
17-03-18 04:03:51.084 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:51.084 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:51.084 -07 000000487 INF: FPGA: Recv ZSGSRD 35226
17-03-18 04:03:51.094 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:51.094 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:03:51.094 -07 000000444 INF: FPGA: Recv ZPIEZORD 30906
17-03-18 04:03:51.104 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:51.104 -07 000000610 INF: Z Motor: Piezo is near 46.0 V (nominally 0 to 100 V), expect near 55.5 V, since DAC is at 5.554 V. Piezo Error = -9.5 V.
17-03-18 04:03:51.104 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.6 um, Read 10 ADC samples: Avg = 35228 (-165.8 uncal um), Error = 0.9 uncal um, Median = 35228 (-165.8 uncal um), StdDev = 2 (0.0 uncal um), Range = 5 (0.0 uncal um), Min = 35226 (-165.8 uncal um), Max = 35231 (-165.8 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 2 (0.0 uncal um)
17-03-18 04:03:51.104 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35228, posNoise = 3, negNoise = 2
17-03-18 04:03:51.104 -07 000000610 INF: Z Motor: After move to -0.166629, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:03:51.104 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 04:03:51.104 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:03:51.104 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:03:51.104 -07 000000579 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:03:51.104 -07 000000437 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:03:51.104 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:03:51.104 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:03:51.104 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:03:51.104 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:03:51.104 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:03:51.104 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:03:51.104 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:03:51.104 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:03:51.104 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 04:03:51.104 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:03:51.114 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 04:03:51.114 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:03:51.124 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-18 04:03:51.124 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 17 ms.
17-03-18 04:03:51.124 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 11 ms.
17-03-18 04:03:51.124 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 17 ms.
17-03-18 04:03:51.124 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 414 414 199 199 36576 150\n [Camera]
17-03-18 04:03:51.324 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:03:51.634 -07 000000444 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:03:51.634 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 119. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1710, R2=1777, Total=3487. Warn if over 250 bubbles per interval.
17-03-18 04:03:51.734 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 606
17-03-18 04:03:51.734 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 606
17-03-18 04:03:51.744 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:03:51.744 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 606
17-03-18 04:03:51.744 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 606
17-03-18 04:03:51.744 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:03:51.744 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:03:51.744 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 2300786904, 0x0, 391868352) start.
17-03-18 04:03:51.744 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:03:51.744 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-18 04:03:51.934 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36576 799
17-03-18 04:03:52.084 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP turning grn on 949
17-03-18 04:03:52.124 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 2300786904, 0x0, 391868352) end. Duration was 376 ms.
17-03-18 04:03:52.124 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-18 04:03:52.124 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:03:52.124 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 373 ms.
17-03-18 04:03:52.124 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-18 04:03:52.124 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:03:52.124 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:03:52.124 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-18 04:03:52.124 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:03:52.134 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-18 04:03:52.284 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1150
17-03-18 04:03:52.284 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1150
17-03-18 04:03:52.284 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:03:52.394 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1150
17-03-18 04:03:52.394 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1150
17-03-18 04:03:52.404 -07 000000437 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:03:52.404 -07 000000590 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 120, FrontChillerTemperature: 3.988112,
17-03-18 04:03:52.404 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:03:52.404 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-18 04:03:52.404 -07 000000437 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:03:52.404 -07 000000437 INF: Camera: sBCa_ReadImage(785074704, 2296381600, 0x0, 418435064) start.
17-03-18 04:03:52.474 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP 1340
17-03-18 04:03:52.474 -07 000000444 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:03:52.474 -07 000000610 INF: FPGA: 'CAMDBLSNAP 414 414 199 199 36576 150' command took 2 ms to send, 1343 ms to get response, and 1348 ms overall
17-03-18 04:03:52.474 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 04:03:52.474 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 17 at Y-position 72.34912109375, Z-Position -0.16663549734109. ------
17-03-18 04:03:52.474 -07 000000618 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:03:52.474 -07 000000611 INF: Y Motor: MoveYZ optimized starting. Moving Y to 73.1926 mm, moving Z to -0.17315 mm
17-03-18 04:03:52.474 -07 000000611 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:03:52.484 -07 000000480 INF: Y Motor: Entering MoveAbsStepped (target = 117108 steps, sync = True, waitForSettling = True)
17-03-18 04:03:52.484 -07 000000501 INF: Z Motor: Entering MoveAbsStepped (DAC = 37824, sync = True, waitForSettling = False)
17-03-18 04:03:52.484 -07 000000501 INF: Z Motor: Moving to -0.173147 mm, started at -0.166635 mm, distance = -6.51 um
17-03-18 04:03:52.484 -07 000000579 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:03:52.484 -07 000000618 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 04:03:52.484 -07 000000501 INF: FPGA: Xmit ZDACW 37824\n [Z Motor]
17-03-18 04:03:52.484 -07 000000480 INF: Y Motor: Moving to 73.1926 mm, started at 72.3491 mm, delta = 0.8435 mm
17-03-18 04:03:52.484 -07 000000512 INF: FPGA: Recv ZDACW
17-03-18 04:03:52.494 -07 000000501 INF: FPGA: 'ZDACW 37824' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 04:03:52.494 -07 000000618 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:03:52.504 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:03:52.504 -07 000000512 INF: FPGA: Recv YRDPOS 148171
17-03-18 04:03:52.514 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-18 04:03:52.514 -07 000000480 INF: Y Motor: Encoder = 148171 = motor step 115758.6 = 72.3491 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:03:52.514 -07 000000480 INF: Y Motor: Last commanded position = 72.3626 mm (115780.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:03:52.514 -07 000000480 INF: Y Motor: Moving 1350 steps-28
17-03-18 04:03:52.514 -07 000000501 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:03:52.514 -07 000000487 INF: FPGA: Recv ZDACR 37824
17-03-18 04:03:52.524 -07 000000501 INF: FPGA: 'ZDACR' command took 1 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 04:03:52.524 -07 000000501 INF: Z Motor: MoveAbsStepped took 38 ms (did NOT wait for settling yet))
17-03-18 04:03:52.524 -07 000000480 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:03:52.694 -07 000000590 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:03:52.694 -07 000000618 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 210 ms overall
17-03-18 04:03:52.804 -07 000000437 INF: Camera: sBCa_ReadImage(785074704, 2296381600, 0x0, 418435064) end. Duration was 398 ms.
17-03-18 04:03:52.804 -07 000000437 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 04:03:52.804 -07 000000437 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:03:52.804 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 398 ms.
17-03-18 04:03:52.804 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 04:03:52.804 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:03:52.814 -07 000000437 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:03:52.814 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:03:52.814 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 527 ms.
17-03-18 04:03:52.814 -07 000000437 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 417 ms.
17-03-18 04:03:52.894 -07 000000501 INF: FPGA: Recv YMVTILE
17-03-18 04:03:52.894 -07 000000480 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-18 04:03:52.944 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:03:52.944 -07 000000487 INF: FPGA: Recv YRDPOS 149863
17-03-18 04:03:52.954 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 04:03:52.954 -07 000000480 INF: Y Motor: Encoder = 149863 = motor step 117080.5 = 73.1753 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:03:52.954 -07 000000480 INF: Y Motor: Position error before settling (table move) = -35 encoder counts (-0.017 mm)
17-03-18 04:03:52.954 -07 000000480 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 387 ms, distance = 0.843 mm, average velocity = 2.180 mm/sec
17-03-18 04:03:53.904 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:03:53.904 -07 000000487 INF: FPGA: Recv YRDPOS 149864
17-03-18 04:03:53.914 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:03:53.914 -07 000000480 INF: Y Motor: Encoder = 149864 = motor step 117081.3 = 73.1758 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:03:53.934 -07 000000480 INF: Y Motor: After move to 73.192604, error = -0.016823, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:03:53.934 -07 000000480 INF: Y Motor: Position error after settling (table move) = -34 encoder counts (-0.017 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 04:03:53.934 -07 000000480 INF: Y Motor: Moved to 73.1758 after 1458 ms (table move)
17-03-18 04:03:53.944 -07 000000611 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173147 mm (DAC = 37824)
17-03-18 04:03:53.944 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:53.944 -07 000000487 INF: FPGA: Recv ZSGSRD 36250
17-03-18 04:03:53.954 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 04:03:53.954 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:53.954 -07 000000512 INF: FPGA: Recv ZSGSRD 36236
17-03-18 04:03:53.964 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:53.964 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:53.964 -07 000000480 INF: FPGA: Recv ZSGSRD 36251
17-03-18 04:03:53.974 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:53.974 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:53.974 -07 000000625 INF: FPGA: Recv ZSGSRD 36247
17-03-18 04:03:53.984 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:53.984 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:53.984 -07 000000512 INF: FPGA: Recv ZSGSRD 36252
17-03-18 04:03:53.994 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:53.994 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:53.994 -07 000000561 INF: FPGA: Recv ZSGSRD 36247
17-03-18 04:03:54.004 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:54.004 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:54.004 -07 000000437 INF: FPGA: Recv ZSGSRD 36240
17-03-18 04:03:54.014 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:54.014 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:54.014 -07 000000012 INF: FPGA: Recv ZSGSRD 36248
17-03-18 04:03:54.024 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:54.024 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:54.024 -07 000000444 INF: FPGA: Recv ZSGSRD 36241
17-03-18 04:03:54.034 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:54.034 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:54.034 -07 000000561 INF: FPGA: Recv ZSGSRD 36244
17-03-18 04:03:54.044 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:54.044 -07 000000611 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:03:54.044 -07 000000501 INF: FPGA: Recv ZPIEZORD 32279
17-03-18 04:03:54.054 -07 000000611 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:54.054 -07 000000611 INF: Z Motor: Piezo is near 49.0 V (nominally 0 to 100 V), expect near 57.7 V, since DAC is at 5.772 V. Piezo Error = -8.8 V.
17-03-18 04:03:54.054 -07 000000611 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.1 um, Read 10 ADC samples: Avg = 36246 (-172.3 uncal um), Error = 0.9 uncal um, Median = 36247 (-172.3 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 36236 (-172.2 uncal um), Max = 36252 (-172.3 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-18 04:03:54.054 -07 000000611 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36246, posNoise = 6, negNoise = 10
17-03-18 04:03:54.054 -07 000000611 INF: Z Motor: After move to -0.173147, error = -0.000028, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:03:54.054 -07 000000611 INF: Z Motor: Settle wait time = 1460 ms, measure time = 108 ms (allowed 150 ms), total time = 1568 ms
17-03-18 04:03:54.054 -07 000000611 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-18 04:03:54.104 -07 000000611 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1621 ms
17-03-18 04:03:54.104 -07 000000611 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:03:54.104 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:03:54.104 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:03:54.104 -07 000000480 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:03:54.104 -07 000000590 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:03:54.104 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:03:54.104 -07 000000455 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:03:54.104 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:03:54.104 -07 000000590 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:03:54.114 -07 000000590 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms.
17-03-18 04:03:54.114 -07 000000590 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:03:54.114 -07 000000590 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 04:03:54.114 -07 000000590 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-18 04:03:54.124 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:03:54.164 -07 000000608 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:03:54.464 -07 000000455 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:03:54.464 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:03:54.464 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:03:54.464 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2348678928, 0x0, 559484976) start.
17-03-18 04:03:54.504 -07 000000487 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:03:54.504 -07 000000501 INF: FPGA: Recv CAMSNAP
17-03-18 04:03:54.504 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 384 ms overall
17-03-18 04:03:54.584 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2348678928, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 04:03:54.584 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:03:54.584 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 04:03:54.584 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 04:03:54.604 -07 000000480 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:03:54.604 -07 000000012 INF: Autofocus start
17-03-18 04:03:54.604 -07 000000012 INF: MeasureProfile start
17-03-18 04:03:54.604 -07 000000561 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:03:54.614 -07 000000480 INF: FPGA: 'FOCMRRCUR 80' command took 1 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:03:54.614 -07 000000480 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:03:54.614 -07 000000012 INF: MeasureProfile done
17-03-18 04:03:54.614 -07 000000012 INF: X=0  Z correction [um]=-0.0713522
17-03-18 04:03:54.614 -07 000000012 INF: Autofocus finished
17-03-18 04:03:54.814 -07 000000437 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:03:54.814 -07 000000480 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:03:54.814 -07 000000610 INF: ------------ Scan Snapping tile 17 at Y-position 73.17578125, Z-position -0.173175345301403. ----------
17-03-18 04:03:54.814 -07 000000610 INF: Cycle	120	Tile	17	Exposure Settings		A	414	G	199	T	199	C	414
17-03-18 04:03:54.824 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36321, sync = True, waitForSettling = True)
17-03-18 04:03:54.824 -07 000000610 INF: Z Motor: Moving to -0.166267 mm, started at -0.173175 mm, distance = 6.91 um
17-03-18 04:03:54.824 -07 000000610 INF: FPGA: Xmit ZDACW 36321\n [Z Motor]
17-03-18 04:03:54.824 -07 000000437 INF: FPGA: Recv ZDACW
17-03-18 04:03:54.834 -07 000000610 INF: FPGA: 'ZDACW 36321' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 04:03:54.834 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:03:54.834 -07 000000512 INF: FPGA: Recv ZDACR 36321
17-03-18 04:03:54.844 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:54.844 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:03:54.994 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:54.994 -07 000000012 INF: FPGA: Recv ZSGSRD 35174
17-03-18 04:03:55.004 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:03:55.004 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:55.004 -07 000000590 INF: FPGA: Recv ZSGSRD 35173
17-03-18 04:03:55.014 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:55.014 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:55.014 -07 000000444 INF: FPGA: Recv ZSGSRD 35173
17-03-18 04:03:55.024 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:55.024 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:55.024 -07 000000512 INF: FPGA: Recv ZSGSRD 35169
17-03-18 04:03:55.034 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:55.034 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:55.034 -07 000000611 INF: FPGA: Recv ZSGSRD 35171
17-03-18 04:03:55.044 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:55.044 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:55.044 -07 000000561 INF: FPGA: Recv ZSGSRD 35173
17-03-18 04:03:55.054 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:55.054 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:55.054 -07 000000608 INF: FPGA: Recv ZSGSRD 35171
17-03-18 04:03:55.064 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:55.064 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:55.064 -07 000000512 INF: FPGA: Recv ZSGSRD 35178
17-03-18 04:03:55.074 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:55.074 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:55.074 -07 000000611 INF: FPGA: Recv ZSGSRD 35174
17-03-18 04:03:55.084 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:55.084 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:55.084 -07 000000444 INF: FPGA: Recv ZSGSRD 35176
17-03-18 04:03:55.094 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:55.094 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:03:55.094 -07 000000608 INF: FPGA: Recv ZPIEZORD 30820
17-03-18 04:03:55.104 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:55.104 -07 000000610 INF: Z Motor: Piezo is near 45.8 V (nominally 0 to 100 V), expect near 55.4 V, since DAC is at 5.542 V. Piezo Error = -9.6 V.
17-03-18 04:03:55.104 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.3 um, Read 10 ADC samples: Avg = 35173 (-165.4 uncal um), Error = 0.9 uncal um, Median = 35173 (-165.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35169 (-165.4 uncal um), Max = 35178 (-165.4 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 04:03:55.104 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35173, posNoise = 5, negNoise = 4
17-03-18 04:03:55.104 -07 000000610 INF: Z Motor: After move to -0.166267, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:03:55.104 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 04:03:55.104 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:03:55.104 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:03:55.104 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:03:55.104 -07 000000012 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:03:55.104 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:03:55.104 -07 000000455 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:03:55.104 -07 000000579 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:03:55.104 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:03:55.104 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 3 ms.
17-03-18 04:03:55.104 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:03:55.104 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:03:55.104 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:03:55.114 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 04:03:55.114 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:03:55.114 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 04:03:55.114 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:03:55.124 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 04:03:55.124 -07 000000579 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 04:03:55.124 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 04:03:55.124 -07 000000012 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 17 ms.
17-03-18 04:03:55.124 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 414 414 199 199 36497 150\n [Camera]
17-03-18 04:03:55.324 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:03:55.734 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 606
17-03-18 04:03:55.734 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 606
17-03-18 04:03:55.734 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:03:55.744 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 606
17-03-18 04:03:55.744 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 606
17-03-18 04:03:55.744 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:03:55.744 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:03:55.744 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-18 04:03:55.744 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:03:55.744 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) start.
17-03-18 04:03:55.934 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36497 799
17-03-18 04:03:56.084 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP turning grn on 952
17-03-18 04:03:56.134 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 389 ms.
17-03-18 04:03:56.134 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-18 04:03:56.134 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:03:56.134 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) end. Duration was 387 ms.
17-03-18 04:03:56.134 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-18 04:03:56.134 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:03:56.134 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:03:56.134 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 04:03:56.134 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:03:56.144 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-18 04:03:56.284 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1148
17-03-18 04:03:56.284 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1148
17-03-18 04:03:56.284 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:03:56.284 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1148
17-03-18 04:03:56.284 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1148
17-03-18 04:03:56.284 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:03:56.284 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:03:56.294 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-18 04:03:56.294 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:03:56.294 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-18 04:03:56.474 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP 1341
17-03-18 04:03:56.474 -07 000000561 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:03:56.474 -07 000000610 INF: FPGA: 'CAMDBLSNAP 414 414 199 199 36497 150' command took 2 ms to send, 1341 ms to get response, and 1348 ms overall
17-03-18 04:03:56.474 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 04:03:56.474 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 18 at Y-position 73.17578125, Z-Position -0.166282165673293. ------
17-03-18 04:03:56.474 -07 000000579 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:03:56.474 -07 000000480 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.0226 mm, moving Z to -0.17223 mm
17-03-18 04:03:56.474 -07 000000480 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:03:56.474 -07 000000611 INF: Y Motor: Entering MoveAbsStepped (target = 118436 steps, sync = True, waitForSettling = True)
17-03-18 04:03:56.474 -07 000000611 INF: Y Motor: Moving to 74.0226 mm, started at 73.1758 mm, delta = 0.8468 mm
17-03-18 04:03:56.474 -07 000000444 INF: Z Motor: Entering MoveAbsStepped (DAC = 37623, sync = True, waitForSettling = False)
17-03-18 04:03:56.474 -07 000000444 INF: Z Motor: Moving to -0.172227 mm, started at -0.166282 mm, distance = -5.94 um
17-03-18 04:03:56.484 -07 000000611 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:03:56.484 -07 000000012 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:03:56.484 -07 000000579 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 5 ms overall
17-03-18 04:03:56.484 -07 000000487 INF: FPGA: Recv YRDPOS 149864
17-03-18 04:03:56.494 -07 000000611 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:03:56.494 -07 000000444 INF: FPGA: Xmit ZDACW 37623\n [Z Motor]
17-03-18 04:03:56.494 -07 000000611 INF: Y Motor: Encoder = 149864 = motor step 117081.3 = 73.1758 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:03:56.494 -07 000000611 INF: Y Motor: Last commanded position = 73.1926 mm (117108.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:03:56.494 -07 000000611 INF: Y Motor: Moving 1355 steps-35
17-03-18 04:03:56.494 -07 000000487 INF: FPGA: Recv ZDACW
17-03-18 04:03:56.504 -07 000000444 INF: FPGA: 'ZDACW 37623' command took 0 ms to send, 0 ms to get response, and 20 ms overall
17-03-18 04:03:56.504 -07 000000579 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:03:56.514 -07 000000611 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:03:56.524 -07 000000444 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:03:56.524 -07 000000501 INF: FPGA: Recv ZDACR 37623
17-03-18 04:03:56.534 -07 000000444 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 04:03:56.534 -07 000000444 INF: Z Motor: MoveAbsStepped took 50 ms (did NOT wait for settling yet))
17-03-18 04:03:56.634 -07 000000437 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:03:56.634 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 119. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1710, R2=1777, Total=3487. Warn if over 250 bubbles per interval.
17-03-18 04:03:56.674 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 384 ms.
17-03-18 04:03:56.674 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-18 04:03:56.674 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:03:56.674 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:03:56.684 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 391 ms.
17-03-18 04:03:56.684 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-18 04:03:56.684 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:03:56.684 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:03:56.684 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 04:03:56.684 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 04:03:56.704 -07 000000501 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:03:56.704 -07 000000579 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 219 ms overall
17-03-18 04:03:56.884 -07 000000590 INF: FPGA: Recv YMVTILE
17-03-18 04:03:56.884 -07 000000611 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 04:03:56.924 -07 000000611 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:03:56.924 -07 000000618 INF: FPGA: Recv YRDPOS 151567
17-03-18 04:03:56.934 -07 000000611 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 04:03:56.934 -07 000000611 INF: Y Motor: Encoder = 151567 = motor step 118411.7 = 74.0073 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:03:56.934 -07 000000611 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-18 04:03:56.934 -07 000000611 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.847 mm, average velocity = 2.133 mm/sec
17-03-18 04:03:57.764 -07 000000455 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 120, FrontChillerTemperature: 4.014009,
17-03-18 04:03:57.884 -07 000000611 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:03:57.884 -07 000000608 INF: FPGA: Recv YRDPOS 151568
17-03-18 04:03:57.894 -07 000000611 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:03:57.894 -07 000000611 INF: Y Motor: Encoder = 151568 = motor step 118412.5 = 74.0078 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:03:57.914 -07 000000611 INF: Y Motor: After move to 74.022606, error = -0.014793, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:03:57.914 -07 000000611 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 04:03:57.914 -07 000000611 INF: Y Motor: Moved to 74.0078 after 1434 ms (table move)
17-03-18 04:03:57.914 -07 000000480 INF: Z Motor: EndOfMoveAbsStepped: target = -0.172227 mm (DAC = 37623)
17-03-18 04:03:57.914 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:57.914 -07 000000561 INF: FPGA: Recv ZSGSRD 36104
17-03-18 04:03:57.924 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 04:03:57.924 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:57.924 -07 000000618 INF: FPGA: Recv ZSGSRD 36106
17-03-18 04:03:57.934 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:03:57.934 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:57.934 -07 000000512 INF: FPGA: Recv ZSGSRD 36100
17-03-18 04:03:57.944 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:57.944 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:57.944 -07 000000012 INF: FPGA: Recv ZSGSRD 36104
17-03-18 04:03:57.954 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:57.954 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:57.954 -07 000000625 INF: FPGA: Recv ZSGSRD 36100
17-03-18 04:03:57.964 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:57.964 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:57.964 -07 000000618 INF: FPGA: Recv ZSGSRD 36106
17-03-18 04:03:57.974 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:57.974 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:57.974 -07 000000608 INF: FPGA: Recv ZSGSRD 36100
17-03-18 04:03:57.984 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:57.984 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:57.984 -07 000000012 INF: FPGA: Recv ZSGSRD 36096
17-03-18 04:03:57.994 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:57.994 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:57.994 -07 000000625 INF: FPGA: Recv ZSGSRD 36099
17-03-18 04:03:58.004 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:58.004 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:58.004 -07 000000608 INF: FPGA: Recv ZSGSRD 36098
17-03-18 04:03:58.014 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:58.014 -07 000000480 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:03:58.014 -07 000000455 INF: FPGA: Recv ZPIEZORD 32080
17-03-18 04:03:58.024 -07 000000480 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:58.024 -07 000000480 INF: Z Motor: Piezo is near 48.5 V (nominally 0 to 100 V), expect near 57.4 V, since DAC is at 5.741 V. Piezo Error = -8.9 V.
17-03-18 04:03:58.024 -07 000000480 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.2 um, Read 10 ADC samples: Avg = 36101 (-171.4 uncal um), Error = 0.9 uncal um, Median = 36100 (-171.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 36096 (-171.3 uncal um), Max = 36106 (-171.4 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 04:03:58.024 -07 000000480 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36101, posNoise = 5, negNoise = 5
17-03-18 04:03:58.024 -07 000000480 INF: Z Motor: After move to -0.172227, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:03:58.024 -07 000000480 INF: Z Motor: Settle wait time = 1437 ms, measure time = 104 ms (allowed 150 ms), total time = 1541 ms
17-03-18 04:03:58.024 -07 000000480 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-18 04:03:58.074 -07 000000480 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1593 ms
17-03-18 04:03:58.074 -07 000000480 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:03:58.074 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:03:58.074 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:03:58.074 -07 000000579 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:03:58.074 -07 000000437 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:03:58.074 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:03:58.074 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:03:58.074 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:03:58.074 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:03:58.084 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 04:03:58.084 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:03:58.094 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-18 04:03:58.094 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms.
17-03-18 04:03:58.094 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:03:58.144 -07 000000444 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:03:58.444 -07 000000579 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:03:58.444 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:03:58.444 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:03:58.444 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2334002848, 0x0, 559484976) start.
17-03-18 04:03:58.484 -07 000000012 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:03:58.484 -07 000000480 INF: FPGA: Recv CAMSNAP
17-03-18 04:03:58.484 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 383 ms to get response, and 385 ms overall
17-03-18 04:03:58.564 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2334002848, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 04:03:58.564 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:03:58.564 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 04:03:58.564 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-18 04:03:58.584 -07 000000611 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:03:58.584 -07 000000444 INF: Autofocus start
17-03-18 04:03:58.584 -07 000000444 INF: MeasureProfile start
17-03-18 04:03:58.584 -07 000000579 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:03:58.594 -07 000000611 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:03:58.594 -07 000000611 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:03:58.594 -07 000000444 INF: MeasureProfile done
17-03-18 04:03:58.594 -07 000000444 INF: X=-16  Z correction [um]=-0.1496812
17-03-18 04:03:58.594 -07 000000444 INF: Autofocus finished
17-03-18 04:03:58.794 -07 000000618 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:03:58.794 -07 000000611 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:03:58.794 -07 000000610 INF: ------------ Scan Snapping tile 18 at Y-position 74.0078125, Z-position -0.172243834540847. ----------
17-03-18 04:03:58.794 -07 000000610 INF: Cycle	120	Tile	18	Exposure Settings		A	414	G	199	T	199	C	414
17-03-18 04:03:58.804 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36103, sync = True, waitForSettling = True)
17-03-18 04:03:58.804 -07 000000610 INF: Z Motor: Moving to -0.165269 mm, started at -0.172244 mm, distance = 6.97 um
17-03-18 04:03:58.804 -07 000000610 INF: FPGA: Xmit ZDACW 36103\n [Z Motor]
17-03-18 04:03:58.804 -07 000000561 INF: FPGA: Recv ZDACW
17-03-18 04:03:58.814 -07 000000610 INF: FPGA: 'ZDACW 36103' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:58.814 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:03:58.814 -07 000000444 INF: FPGA: Recv ZDACR 36103
17-03-18 04:03:58.824 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:58.824 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:03:58.974 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:58.974 -07 000000611 INF: FPGA: Recv ZSGSRD 35021
17-03-18 04:03:58.984 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:03:58.984 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:58.984 -07 000000487 INF: FPGA: Recv ZSGSRD 35025
17-03-18 04:03:58.994 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:58.994 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:58.994 -07 000000625 INF: FPGA: Recv ZSGSRD 35016
17-03-18 04:03:59.004 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:59.004 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:59.004 -07 000000501 INF: FPGA: Recv ZSGSRD 35013
17-03-18 04:03:59.014 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:59.014 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:59.014 -07 000000480 INF: FPGA: Recv ZSGSRD 35019
17-03-18 04:03:59.024 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:59.024 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:59.024 -07 000000611 INF: FPGA: Recv ZSGSRD 35018
17-03-18 04:03:59.034 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:59.034 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:59.034 -07 000000455 INF: FPGA: Recv ZSGSRD 35014
17-03-18 04:03:59.044 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:59.044 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:59.044 -07 000000487 INF: FPGA: Recv ZSGSRD 35012
17-03-18 04:03:59.054 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:59.054 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:59.054 -07 000000444 INF: FPGA: Recv ZSGSRD 35018
17-03-18 04:03:59.064 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:59.064 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:03:59.064 -07 000000618 INF: FPGA: Recv ZSGSRD 35023
17-03-18 04:03:59.074 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:59.074 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:03:59.074 -07 000000512 INF: FPGA: Recv ZPIEZORD 30641
17-03-18 04:03:59.084 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:03:59.084 -07 000000610 INF: Z Motor: Piezo is near 45.5 V (nominally 0 to 100 V), expect near 55.1 V, since DAC is at 5.509 V. Piezo Error = -9.6 V.
17-03-18 04:03:59.084 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -165.3 um, Read 10 ADC samples: Avg = 35018 (-164.4 uncal um), Error = 0.8 uncal um, Median = 35018 (-164.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 35012 (-164.4 uncal um), Max = 35025 (-164.5 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 04:03:59.084 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35018, posNoise = 7, negNoise = 6
17-03-18 04:03:59.084 -07 000000610 INF: Z Motor: After move to -0.165269, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:03:59.084 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-18 04:03:59.084 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:03:59.084 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:03:59.084 -07 000000611 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:03:59.084 -07 000000012 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:03:59.084 -07 000000487 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:03:59.084 -07 000000487 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:03:59.084 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:03:59.084 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:03:59.084 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:03:59.084 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:03:59.084 -07 000000487 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 04:03:59.084 -07 000000487 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:03:59.094 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 04:03:59.094 -07 000000487 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 04:03:59.094 -07 000000487 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:03:59.094 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:03:59.104 -07 000000487 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 04:03:59.104 -07 000000487 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 04:03:59.104 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-18 04:03:59.104 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 17 ms.
17-03-18 04:03:59.104 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 414 414 199 199 36279 150\n [Camera]
17-03-18 04:03:59.304 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:03:59.714 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 606
17-03-18 04:03:59.714 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 606
17-03-18 04:03:59.714 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:03:59.724 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 606
17-03-18 04:03:59.724 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 606
17-03-18 04:03:59.724 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:03:59.724 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:03:59.724 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-18 04:03:59.724 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:03:59.724 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) start.
17-03-18 04:03:59.914 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36279 799
17-03-18 04:04:00.064 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP turning grn on 949
17-03-18 04:04:00.104 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 375 ms.
17-03-18 04:04:00.104 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) end. Duration was 372 ms.
17-03-18 04:04:00.104 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 375 ms.
17-03-18 04:04:00.104 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:04:00.104 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 372 ms.
17-03-18 04:04:00.104 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:04:00.104 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:04:00.104 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 04:04:00.104 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-18 04:04:00.114 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-18 04:04:00.264 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1148
17-03-18 04:04:00.264 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1148
17-03-18 04:04:00.374 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1148
17-03-18 04:04:00.374 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1148
17-03-18 04:04:00.374 -07 000000437 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:04:00.374 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:04:00.374 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:04:00.374 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-18 04:04:00.384 -07 000000437 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:04:00.384 -07 000000437 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-18 04:04:00.454 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP 1340
17-03-18 04:04:00.624 -07 000000501 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:04:00.624 -07 000000610 INF: FPGA: 'CAMDBLSNAP 414 414 199 199 36279 150' command took 2 ms to send, 1516 ms to get response, and 1522 ms overall
17-03-18 04:04:00.624 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 04:04:00.624 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 19 at Y-position 74.0078125, Z-Position -0.16528641279132. ------
17-03-18 04:04:00.634 -07 000000625 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:04:00.634 -07 000000444 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.8526 mm, moving Z to -0.17153 mm
17-03-18 04:04:00.634 -07 000000444 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:04:00.634 -07 000000611 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:04:00.634 -07 000000487 INF: Z Motor: Entering MoveAbsStepped (DAC = 37470, sync = True, waitForSettling = False)
17-03-18 04:04:00.634 -07 000000487 INF: Z Motor: Moving to -0.171527 mm, started at -0.165286 mm, distance = -6.24 um
17-03-18 04:04:00.634 -07 000000608 INF: Y Motor: Entering MoveAbsStepped (target = 119764 steps, sync = True, waitForSettling = True)
17-03-18 04:04:00.634 -07 000000608 INF: Y Motor: Moving to 74.8526 mm, started at 74.0078 mm, delta = 0.8448 mm
17-03-18 04:04:00.644 -07 000000625 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:04:00.644 -07 000000487 INF: FPGA: Xmit ZDACW 37470\n [Z Motor]
17-03-18 04:04:00.644 -07 000000561 INF: FPGA: Recv ZDACW
17-03-18 04:04:00.654 -07 000000487 INF: FPGA: 'ZDACW 37470' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-18 04:04:00.654 -07 000000487 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:04:00.654 -07 000000561 INF: FPGA: Recv ZDACR 37470
17-03-18 04:04:00.664 -07 000000487 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:00.664 -07 000000487 INF: Z Motor: MoveAbsStepped took 23 ms (did NOT wait for settling yet))
17-03-18 04:04:00.664 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:04:00.664 -07 000000618 INF: FPGA: Recv YRDPOS 151568
17-03-18 04:04:00.674 -07 000000625 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:04:00.674 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 32 ms overall
17-03-18 04:04:00.674 -07 000000608 INF: Y Motor: Encoder = 151568 = motor step 118412.5 = 74.0078 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:04:00.674 -07 000000608 INF: Y Motor: Last commanded position = 74.0226 mm (118436.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:04:00.674 -07 000000608 INF: Y Motor: Moving 1352 steps-31
17-03-18 04:04:00.684 -07 000000608 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:04:00.764 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 387 ms.
17-03-18 04:04:00.764 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-18 04:04:00.764 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:04:00.774 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:04:00.774 -07 000000437 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 393 ms.
17-03-18 04:04:00.774 -07 000000437 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-18 04:04:00.774 -07 000000437 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:04:00.774 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-18 04:04:00.774 -07 000000437 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:04:00.774 -07 000000437 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-18 04:04:00.874 -07 000000480 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:04:00.874 -07 000000625 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 232 ms overall
17-03-18 04:04:01.054 -07 000000012 INF: FPGA: Recv YMVTILE
17-03-18 04:04:01.054 -07 000000608 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-18 04:04:01.084 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:04:01.094 -07 000000618 INF: FPGA: Recv YRDPOS 153254
17-03-18 04:04:01.094 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 04:04:01.094 -07 000000608 INF: Y Motor: Encoder = 153254 = motor step 119729.7 = 74.8311 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:04:01.094 -07 000000608 INF: Y Motor: Position error before settling (table move) = -44 encoder counts (-0.021 mm)
17-03-18 04:04:01.094 -07 000000608 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.845 mm, average velocity = 2.177 mm/sec
17-03-18 04:04:01.634 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:04:01.634 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 119. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1710, R2=1777, Total=3487. Warn if over 250 bubbles per interval.
17-03-18 04:04:02.044 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:04:02.044 -07 000000487 INF: FPGA: Recv YRDPOS 153254
17-03-18 04:04:02.054 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:04:02.054 -07 000000608 INF: Y Motor: Encoder = 153254 = motor step 119729.7 = 74.8311 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:04:02.064 -07 000000608 INF: Y Motor: After move to 74.852608, error = -0.021553, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:04:02.064 -07 000000608 INF: Y Motor: Position error after settling (table move) = -44 encoder counts (-0.021 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:04:02.064 -07 000000608 INF: Y Motor: Moved to 74.8311 after 1431 ms (table move)
17-03-18 04:04:02.074 -07 000000444 INF: Z Motor: EndOfMoveAbsStepped: target = -0.171527 mm (DAC = 37470)
17-03-18 04:04:02.074 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:02.074 -07 000000625 INF: FPGA: Recv ZSGSRD 35994
17-03-18 04:04:02.084 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:04:02.084 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:02.084 -07 000000487 INF: FPGA: Recv ZSGSRD 35990
17-03-18 04:04:02.094 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:02.094 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:02.094 -07 000000501 INF: FPGA: Recv ZSGSRD 35990
17-03-18 04:04:02.104 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:02.104 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:02.104 -07 000000455 INF: FPGA: Recv ZSGSRD 35984
17-03-18 04:04:02.114 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:02.114 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:02.114 -07 000000618 INF: FPGA: Recv ZSGSRD 35999
17-03-18 04:04:02.124 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:02.124 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:02.124 -07 000000561 INF: FPGA: Recv ZSGSRD 35993
17-03-18 04:04:02.134 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:02.134 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:02.134 -07 000000611 INF: FPGA: Recv ZSGSRD 35998
17-03-18 04:04:02.144 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:02.144 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:02.144 -07 000000455 INF: FPGA: Recv ZSGSRD 35990
17-03-18 04:04:02.154 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:02.154 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:02.154 -07 000000618 INF: FPGA: Recv ZSGSRD 35983
17-03-18 04:04:02.164 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:02.164 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:02.164 -07 000000437 INF: FPGA: Recv ZSGSRD 35990
17-03-18 04:04:02.174 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:02.174 -07 000000444 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:04:02.174 -07 000000012 INF: FPGA: Recv ZPIEZORD 31946
17-03-18 04:04:02.184 -07 000000444 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:02.184 -07 000000444 INF: Z Motor: Piezo is near 48.2 V (nominally 0 to 100 V), expect near 57.2 V, since DAC is at 5.718 V. Piezo Error = -8.9 V.
17-03-18 04:04:02.184 -07 000000444 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.5 um, Read 10 ADC samples: Avg = 35991 (-170.7 uncal um), Error = 0.9 uncal um, Median = 35990 (-170.7 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 35983 (-170.6 uncal um), Max = 35999 (-170.7 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 04:04:02.184 -07 000000444 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35991, posNoise = 8, negNoise = 8
17-03-18 04:04:02.184 -07 000000444 INF: Z Motor: After move to -0.171527, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:04:02.184 -07 000000444 INF: Z Motor: Settle wait time = 1436 ms, measure time = 107 ms (allowed 150 ms), total time = 1543 ms
17-03-18 04:04:02.184 -07 000000444 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-18 04:04:02.234 -07 000000444 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1596 ms
17-03-18 04:04:02.234 -07 000000444 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:04:02.234 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:04:02.234 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:04:02.234 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:04:02.234 -07 000000455 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:04:02.234 -07 000000608 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:04:02.234 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:04:02.234 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:04:02.234 -07 000000608 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:04:02.244 -07 000000608 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 04:04:02.244 -07 000000608 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:04:02.244 -07 000000608 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 04:04:02.244 -07 000000608 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 04:04:02.254 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:04:02.294 -07 000000455 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:04:02.594 -07 000000487 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:04:02.594 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:04:02.604 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:04:02.604 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2334002848, 0x0, 559484976) start.
17-03-18 04:04:02.634 -07 000000561 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:04:02.634 -07 000000512 INF: FPGA: Recv CAMSNAP
17-03-18 04:04:02.634 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 384 ms overall
17-03-18 04:04:02.714 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2334002848, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 04:04:02.714 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:04:02.714 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 04:04:02.714 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 04:04:02.734 -07 000000455 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:04:02.734 -07 000000444 INF: Autofocus start
17-03-18 04:04:02.734 -07 000000444 INF: MeasureProfile start
17-03-18 04:04:02.734 -07 000000611 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:04:02.744 -07 000000455 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:04:02.744 -07 000000455 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:04:02.744 -07 000000444 INF: MeasureProfile done
17-03-18 04:04:02.744 -07 000000444 INF: X=32  Z correction [um]=0.09220707
17-03-18 04:04:02.744 -07 000000444 INF: Autofocus finished
17-03-18 04:04:02.944 -07 000000012 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:04:02.944 -07 000000455 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 203 ms overall
17-03-18 04:04:02.944 -07 000000610 INF: ------------ Scan Snapping tile 19 at Y-position 74.8310546875, Z-position -0.171537171205254. ----------
17-03-18 04:04:02.954 -07 000000610 INF: Cycle	120	Tile	19	Exposure Settings		A	414	G	199	T	199	C	414
17-03-18 04:04:02.954 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36003, sync = True, waitForSettling = True)
17-03-18 04:04:02.954 -07 000000610 INF: Z Motor: Moving to -0.164811 mm, started at -0.171537 mm, distance = 6.73 um
17-03-18 04:04:02.954 -07 000000610 INF: FPGA: Xmit ZDACW 36003\n [Z Motor]
17-03-18 04:04:02.954 -07 000000501 INF: FPGA: Recv ZDACW
17-03-18 04:04:02.964 -07 000000610 INF: FPGA: 'ZDACW 36003' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:04:02.964 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:04:02.964 -07 000000611 INF: FPGA: Recv ZDACR 36003
17-03-18 04:04:02.974 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:02.974 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:04:03.124 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:03.124 -07 000000611 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 120, FrontChillerTemperature: 4.001704,
17-03-18 04:04:03.124 -07 000000590 INF: FPGA: Recv ZSGSRD 34941
17-03-18 04:04:03.134 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:03.134 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:03.134 -07 000000480 INF: FPGA: Recv ZSGSRD 34942
17-03-18 04:04:03.144 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:04:03.164 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:03.164 -07 000000487 INF: FPGA: Recv ZSGSRD 34948
17-03-18 04:04:03.174 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 04:04:03.174 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:03.174 -07 000000579 INF: FPGA: Recv ZSGSRD 34950
17-03-18 04:04:03.184 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:03.204 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:03.204 -07 000000455 INF: FPGA: Recv ZSGSRD 34944
17-03-18 04:04:03.214 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 04:04:03.214 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:03.214 -07 000000618 INF: FPGA: Recv ZSGSRD 34942
17-03-18 04:04:03.224 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:03.224 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:03.224 -07 000000579 INF: FPGA: Recv ZSGSRD 34949
17-03-18 04:04:03.234 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:03.234 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:03.234 -07 000000480 INF: FPGA: Recv ZSGSRD 34944
17-03-18 04:04:03.244 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:03.244 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:03.244 -07 000000012 INF: FPGA: Recv ZSGSRD 34945
17-03-18 04:04:03.254 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:03.254 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:03.254 -07 000000618 INF: FPGA: Recv ZSGSRD 34947
17-03-18 04:04:03.264 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:03.264 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:04:03.264 -07 000000561 INF: FPGA: Recv ZPIEZORD 30557
17-03-18 04:04:03.274 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:03.274 -07 000000610 INF: Z Motor: Piezo is near 45.3 V (nominally 0 to 100 V), expect near 54.9 V, since DAC is at 5.494 V. Piezo Error = -9.7 V.
17-03-18 04:04:03.274 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -164.8 um, Read 10 ADC samples: Avg = 34945 (-164.0 uncal um), Error = 0.9 uncal um, Median = 34944 (-163.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 34941 (-163.9 uncal um), Max = 34950 (-164.0 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 04:04:03.274 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 34945, posNoise = 5, negNoise = 4
17-03-18 04:04:03.274 -07 000000610 INF: Z Motor: After move to -0.164811, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:04:03.274 -07 000000610 INF: Z Motor: MoveAbsStepped took 317 ms)
17-03-18 04:04:03.274 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:04:03.274 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:04:03.274 -07 000000487 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:04:03.274 -07 000000444 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:04:03.274 -07 000000437 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:04:03.274 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:04:03.274 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:04:03.274 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:04:03.274 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-18 04:04:03.274 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:04:03.274 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 04:04:03.274 -07 000000437 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:04:03.284 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 04:04:03.284 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:04:03.284 -07 000000437 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 04:04:03.284 -07 000000437 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:04:03.294 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-18 04:04:03.294 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 04:04:03.294 -07 000000437 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 04:04:03.294 -07 000000437 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 23 ms.
17-03-18 04:04:03.304 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 414 414 199 199 36180 150\n [Camera]
17-03-18 04:04:03.504 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning red on 193
17-03-18 04:04:03.914 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 606
17-03-18 04:04:03.914 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 606
17-03-18 04:04:03.914 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:04:03.914 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 606
17-03-18 04:04:03.914 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 606
17-03-18 04:04:03.924 -07 000000625 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:04:03.924 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:04:03.924 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-18 04:04:03.924 -07 000000625 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:04:03.924 -07 000000625 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) start.
17-03-18 04:04:04.104 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36180 799
17-03-18 04:04:04.254 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP turning grn on 949
17-03-18 04:04:04.304 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 384 ms.
17-03-18 04:04:04.304 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-18 04:04:04.304 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:04:04.304 -07 000000625 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) end. Duration was 384 ms.
17-03-18 04:04:04.314 -07 000000625 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-18 04:04:04.314 -07 000000625 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:04:04.314 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:04:04.314 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-18 04:04:04.314 -07 000000625 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:04:04.324 -07 000000625 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 04:04:04.474 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1148
17-03-18 04:04:04.474 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1148
17-03-18 04:04:04.474 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1148
17-03-18 04:04:04.474 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1148
17-03-18 04:04:04.474 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:04:04.474 -07 000000611 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:04:04.484 -07 000000611 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:04:04.484 -07 000000611 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-18 04:04:04.484 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:04:04.484 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-18 04:04:04.644 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP 1340
17-03-18 04:04:04.654 -07 000000012 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:04:04.654 -07 000000610 INF: FPGA: 'CAMDBLSNAP 414 414 199 199 36180 150' command took 2 ms to send, 1340 ms to get response, and 1348 ms overall
17-03-18 04:04:04.884 -07 000000611 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 403 ms.
17-03-18 04:04:04.884 -07 000000611 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-18 04:04:04.884 -07 000000611 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:04:04.884 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 402 ms.
17-03-18 04:04:04.884 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 04:04:04.884 -07 000000444 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:04:04.884 -07 000000611 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:04:04.894 -07 000000444 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:04:04.894 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 416 ms.
17-03-18 04:04:04.894 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) start.
17-03-18 04:04:04.894 -07 000000611 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 421 ms.
17-03-18 04:04:04.934 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) end. Duration was 43 ms.
17-03-18 04:04:04.934 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) start.
17-03-18 04:04:04.974 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) end. Duration was 42 ms.
17-03-18 04:04:04.974 -07 000000610 INF: Move compensator for Bottom-surface imaging.
17-03-18 04:04:04.974 -07 000000610 INF: FPGA: Xmit EMCUR 80\n [Compensator]
17-03-18 04:04:04.984 -07 000000625 INF: FPGA: Recv EMCUR 
17-03-18 04:04:04.984 -07 000000610 INF: FPGA: 'EMCUR 80' command took 0 ms to send, 3 ms to get response, and 4 ms overall
17-03-18 04:04:04.984 -07 000000610 INF: FPGA: Xmit EMIN 20 40\n [Compensator]
17-03-18 04:04:05.484 -07 000000444 INF: FPGA: Recv EMIN
17-03-18 04:04:05.484 -07 000000610 INF: FPGA: 'EMIN 20 40' command took 0 ms to send, 496 ms to get response, and 502 ms overall
17-03-18 04:04:05.484 -07 000000610 INF: FPGA: Xmit EMCUR 60\n [Compensator]
17-03-18 04:04:05.484 -07 000000625 INF: FPGA: Recv EMCUR 
17-03-18 04:04:05.494 -07 000000610 INF: FPGA: 'EMCUR 60' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 04:04:05.494 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 04:04:05.494 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 1 at Y-position 74.8310546875, Z-Position -0.164817445304972. ------
17-03-18 04:04:05.494 -07 000000579 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:04:05.494 -07 000000590 INF: Y Motor: MoveYZ optimized starting. Moving Y to 59.9126 mm, moving Z to -0.13932 mm
17-03-18 04:04:05.494 -07 000000590 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:04:05.504 -07 000000487 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:04:05.504 -07 000000579 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 04:04:05.504 -07 000000611 INF: Z Motor: Entering MoveAbsStepped (DAC = 30435, sync = True, waitForSettling = False)
17-03-18 04:04:05.504 -07 000000611 INF: Z Motor: Moving to -0.139322 mm, started at -0.164817 mm, distance = 25.49 um
17-03-18 04:04:05.504 -07 000000579 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:04:05.504 -07 000000501 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True)
17-03-18 04:04:05.504 -07 000000501 INF: Y Motor: Moving to 59.9126 mm, started at 74.8311 mm, delta = -14.9184 mm
17-03-18 04:04:05.514 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:04:05.514 -07 000000437 INF: FPGA: Recv YRDPOS 153256
17-03-18 04:04:05.524 -07 000000611 INF: FPGA: Xmit ZDACW 30435\n [Z Motor]
17-03-18 04:04:05.524 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-18 04:04:05.524 -07 000000501 INF: Y Motor: Encoder = 153256 = motor step 119731.3 = 74.8320 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:04:05.524 -07 000000487 INF: FPGA: Recv ZDACW
17-03-18 04:04:05.534 -07 000000611 INF: FPGA: 'ZDACW 30435' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-18 04:04:05.534 -07 000000611 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:04:05.534 -07 000000501 INF: Y Motor: Last commanded position = 74.8526 mm (119764.2 steps), delta from last commanded position = -14.9400 mm (-23904.0 steps). UsingTableMove = False
17-03-18 04:04:05.534 -07 000000501 INF: Y Motor: Moving to 122701 encoder counts
17-03-18 04:04:05.534 -07 000000437 INF: FPGA: Recv ZDACR 30435
17-03-18 04:04:05.544 -07 000000501 INF: FPGA: Xmit YMVTO 122701\n [Y Motor]
17-03-18 04:04:05.544 -07 000000611 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:05.544 -07 000000611 INF: Z Motor: MoveAbsStepped took 38 ms (did NOT wait for settling yet))
17-03-18 04:04:05.704 -07 000000480 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:04:05.704 -07 000000579 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 194 ms to get response, and 202 ms overall
17-03-18 04:04:06.634 -07 000000444 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:04:06.634 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 119. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1710, R2=1777, Total=3487. Warn if over 250 bubbles per interval.
17-03-18 04:04:07.164 -07 000000625 INF: FPGA: Recv YMVTO 122703 23904
17-03-18 04:04:07.164 -07 000000501 INF: FPGA: 'YMVTO 122701' command took 0 ms to send, 1618 ms to get response, and 1638 ms overall
17-03-18 04:04:07.164 -07 000000501 INF: Y Motor: Position error before settling = 2 encoder counts (0.001 mm)
17-03-18 04:04:07.164 -07 000000501 INF: Y Motor: To move from 74.832 to 59.913 (-14.918 mm) should take 23871 steps, but required 23904 steps (14.940 mm). Slippage = 0.021 mm (0.00%).
17-03-18 04:04:07.164 -07 000000501 INF: Y Motor: FPGA move command 'YMVTO 122701' took 1638 ms, distance = 14.918 mm, average velocity = 9.108 mm/sec
17-03-18 04:04:08.524 -07 000000579 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 120, FrontChillerTemperature: 4.009895,
17-03-18 04:04:10.014 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:04:10.014 -07 000000512 INF: FPGA: Recv YRDPOS 122697
17-03-18 04:04:10.024 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:04:10.024 -07 000000501 INF: Y Motor: Encoder = 122697 = motor step 95857.0 = 59.9106 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:04:10.054 -07 000000501 INF: Y Motor: After move to 59.912609, error = -0.001965, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:04:10.054 -07 000000501 INF: Y Motor: Position error after settling = -4 encoder counts (-0.002 mm), Delta during settling = -6 counts (-0.003 mm)
17-03-18 04:04:10.054 -07 000000501 INF: Y Motor: Moved to 59.9106 after 4555 ms
17-03-18 04:04:10.064 -07 000000590 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139322 mm (DAC = 30435)
17-03-18 04:04:10.064 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:10.064 -07 000000608 INF: FPGA: Recv ZSGSRD 30974
17-03-18 04:04:10.074 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 04:04:10.074 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:10.074 -07 000000444 INF: FPGA: Recv ZSGSRD 30977
17-03-18 04:04:10.084 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:10.084 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:10.084 -07 000000512 INF: FPGA: Recv ZSGSRD 30977
17-03-18 04:04:10.094 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:10.094 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:10.094 -07 000000579 INF: FPGA: Recv ZSGSRD 30982
17-03-18 04:04:10.104 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:10.104 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:10.104 -07 000000480 INF: FPGA: Recv ZSGSRD 30974
17-03-18 04:04:10.114 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:10.114 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:10.114 -07 000000501 INF: FPGA: Recv ZSGSRD 30976
17-03-18 04:04:10.124 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:04:10.124 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:10.124 -07 000000012 INF: FPGA: Recv ZSGSRD 30981
17-03-18 04:04:10.134 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:10.134 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:10.134 -07 000000444 INF: FPGA: Recv ZSGSRD 30980
17-03-18 04:04:10.144 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:10.144 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:10.144 -07 000000480 INF: FPGA: Recv ZSGSRD 30981
17-03-18 04:04:10.154 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:10.154 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:10.154 -07 000000501 INF: FPGA: Recv ZSGSRD 30976
17-03-18 04:04:10.164 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:10.164 -07 000000590 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:04:10.164 -07 000000437 INF: FPGA: Recv ZPIEZORD 26395
17-03-18 04:04:10.174 -07 000000590 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:10.174 -07 000000590 INF: Z Motor: Piezo is near 36.4 V (nominally 0 to 100 V), expect near 46.4 V, since DAC is at 4.644 V. Piezo Error = -10.1 V.
17-03-18 04:04:10.174 -07 000000590 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.3 um, Read 10 ADC samples: Avg = 30978 (-138.5 uncal um), Error = 0.8 uncal um, Median = 30977 (-138.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 30974 (-138.5 uncal um), Max = 30982 (-138.6 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 04:04:10.174 -07 000000590 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30978, posNoise = 4, negNoise = 4
17-03-18 04:04:10.174 -07 000000590 INF: Z Motor: After move to -0.139322, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:04:10.174 -07 000000590 INF: Z Motor: Settle wait time = 4560 ms, measure time = 108 ms (allowed 150 ms), total time = 4668 ms
17-03-18 04:04:10.174 -07 000000590 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-18 04:04:10.224 -07 000000590 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 4721 ms
17-03-18 04:04:10.224 -07 000000590 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:04:10.224 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:04:10.224 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:04:10.224 -07 000000012 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:04:10.224 -07 000000625 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:04:10.224 -07 000000512 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:04:10.224 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:04:10.224 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 04:04:10.224 -07 000000512 INF: Camera: sBCa_SetPowerMode(785074288, 1) start.
17-03-18 04:04:10.244 -07 000000512 INF: Camera: sBCa_SetPowerMode(785074288, 1) end. Duration was 20 ms.
17-03-18 04:04:10.244 -07 000000512 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:04:10.254 -07 000000512 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 04:04:10.254 -07 000000512 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:04:10.254 -07 000000512 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 04:04:10.254 -07 000000512 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 31 ms.
17-03-18 04:04:10.264 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:04:10.304 -07 000000590 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:04:10.604 -07 000000608 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:04:10.604 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:04:10.604 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:04:10.604 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2334002848, 0x0, 559484976) start.
17-03-18 04:04:10.644 -07 000000618 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:04:10.644 -07 000000487 INF: FPGA: Recv CAMSNAP
17-03-18 04:04:10.644 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 384 ms overall
17-03-18 04:04:10.724 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2334002848, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 04:04:10.724 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:04:10.724 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 04:04:10.724 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 04:04:10.744 -07 000000437 INF: Image SNR check: start
17-03-18 04:04:10.744 -07 000000480 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:04:10.744 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:04:10.754 -07 000000480 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:04:10.754 -07 000000480 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:04:10.754 -07 000000437 INF: Image SNR check: pass  [peak (Max-Min)=129.81]
17-03-18 04:04:10.754 -07 000000437 INF: Autofocus start
17-03-18 04:04:10.754 -07 000000437 INF: MeasureProfile start
17-03-18 04:04:10.764 -07 000000437 INF: MeasureProfile done
17-03-18 04:04:10.774 -07 000000437 INF: X=-16  Z correction [um]=-0.08128808
17-03-18 04:04:10.774 -07 000000437 INF: Autofocus finished
17-03-18 04:04:10.954 -07 000000625 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:04:10.954 -07 000000480 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:04:10.954 -07 000000610 INF: ------------ Scan Snapping tile 1 at Y-position 59.91064453125, Z-position -0.139332595738606. ----------
17-03-18 04:04:10.954 -07 000000610 INF: Cycle	120	Tile	1	Exposure Settings		A	414	G	199	T	199	C	414
17-03-18 04:04:10.964 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28930, sync = True, waitForSettling = True)
17-03-18 04:04:10.964 -07 000000610 INF: Z Motor: Moving to -0.132433 mm, started at -0.139333 mm, distance = 6.90 um
17-03-18 04:04:10.964 -07 000000610 INF: FPGA: Xmit ZDACW 28930\n [Z Motor]
17-03-18 04:04:10.964 -07 000000501 INF: FPGA: Recv ZDACW
17-03-18 04:04:10.974 -07 000000610 INF: FPGA: 'ZDACW 28930' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:10.974 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:04:10.974 -07 000000487 INF: FPGA: Recv ZDACR 28930
17-03-18 04:04:10.984 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:10.984 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:04:11.134 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:11.134 -07 000000480 INF: FPGA: Recv ZSGSRD 29905
17-03-18 04:04:11.144 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:04:11.144 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:11.144 -07 000000512 INF: FPGA: Recv ZSGSRD 29907
17-03-18 04:04:11.154 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:11.154 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:11.154 -07 000000501 INF: FPGA: Recv ZSGSRD 29903
17-03-18 04:04:11.164 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:11.164 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:11.164 -07 000000625 INF: FPGA: Recv ZSGSRD 29900
17-03-18 04:04:11.174 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:11.174 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:11.174 -07 000000480 INF: FPGA: Recv ZSGSRD 29910
17-03-18 04:04:11.184 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:11.184 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:11.184 -07 000000590 INF: FPGA: Recv ZSGSRD 29904
17-03-18 04:04:11.194 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:11.194 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:11.194 -07 000000625 INF: FPGA: Recv ZSGSRD 29906
17-03-18 04:04:11.204 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:11.204 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:11.204 -07 000000512 INF: FPGA: Recv ZSGSRD 29903
17-03-18 04:04:11.214 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:11.214 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:11.214 -07 000000444 INF: FPGA: Recv ZSGSRD 29905
17-03-18 04:04:11.224 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:11.224 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:11.224 -07 000000480 INF: FPGA: Recv ZSGSRD 29906
17-03-18 04:04:11.234 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:11.234 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:04:11.234 -07 000000608 INF: FPGA: Recv ZPIEZORD 25267
17-03-18 04:04:11.244 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:11.244 -07 000000610 INF: Z Motor: Piezo is near 34.0 V (nominally 0 to 100 V), expect near 44.1 V, since DAC is at 4.414 V. Piezo Error = -10.2 V.
17-03-18 04:04:11.244 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.4 um, Read 10 ADC samples: Avg = 29905 (-131.7 uncal um), Error = 0.8 uncal um, Median = 29905 (-131.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29900 (-131.6 uncal um), Max = 29910 (-131.7 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 04:04:11.244 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29905, posNoise = 5, negNoise = 5
17-03-18 04:04:11.244 -07 000000610 INF: Z Motor: After move to -0.132433, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:04:11.244 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 04:04:11.244 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:04:11.244 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:04:11.244 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:04:11.244 -07 000000590 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:04:11.244 -07 000000444 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:04:11.244 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:04:11.244 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:04:11.244 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:04:11.244 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:04:11.244 -07 000000444 INF: Camera: sBCa_SetPowerMode(785074704, 1) start.
17-03-18 04:04:11.244 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:04:11.244 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:04:11.244 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 04:04:11.254 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:04:11.254 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 04:04:11.254 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 04:04:11.264 -07 000000444 INF: Camera: sBCa_SetPowerMode(785074704, 1) end. Duration was 20 ms.
17-03-18 04:04:11.264 -07 000000444 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:04:11.264 -07 000000444 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 04:04:11.264 -07 000000444 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:04:11.274 -07 000000444 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 04:04:11.274 -07 000000444 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 33 ms.
17-03-18 04:04:11.284 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 414 414 199 199 29107 150\n [Camera]
17-03-18 04:04:11.484 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:04:11.634 -07 000000625 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:04:11.634 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 119. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1710, R2=1777, Total=3487. Warn if over 250 bubbles per interval.
17-03-18 04:04:11.894 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 606
17-03-18 04:04:11.894 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 606
17-03-18 04:04:11.894 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:04:11.894 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 606
17-03-18 04:04:11.894 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 606
17-03-18 04:04:11.904 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:04:11.904 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:04:11.904 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-18 04:04:11.904 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:04:11.904 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) start.
17-03-18 04:04:12.084 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29107 799
17-03-18 04:04:12.234 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP turning grn on 949
17-03-18 04:04:12.284 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) end. Duration was 374 ms.
17-03-18 04:04:12.284 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-18 04:04:12.284 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:04:12.284 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 378 ms.
17-03-18 04:04:12.284 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-18 04:04:12.284 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:04:12.284 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 04:04:12.284 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 04:04:12.284 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-18 04:04:12.294 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-18 04:04:12.434 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1148
17-03-18 04:04:12.434 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1148
17-03-18 04:04:12.434 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:04:12.544 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1148
17-03-18 04:04:12.544 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1148
17-03-18 04:04:12.544 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:04:12.554 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:04:12.554 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-18 04:04:12.554 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:04:12.554 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-18 04:04:12.624 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP 1341
17-03-18 04:04:12.634 -07 000000618 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:04:12.634 -07 000000610 INF: FPGA: 'CAMDBLSNAP 414 414 199 199 29107 150' command took 2 ms to send, 1340 ms to get response, and 1348 ms overall
17-03-18 04:04:12.634 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 04:04:12.634 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 2 at Y-position 59.91064453125, Z-Position -0.132439416110496. ------
17-03-18 04:04:12.634 -07 000000590 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:04:12.634 -07 000000437 INF: Y Motor: MoveYZ optimized starting. Moving Y to 60.7426 mm, moving Z to -0.13884 mm
17-03-18 04:04:12.634 -07 000000437 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:04:12.634 -07 000000012 INF: Y Motor: Entering MoveAbsStepped (target = 97188 steps, sync = True, waitForSettling = True)
17-03-18 04:04:12.634 -07 000000012 INF: Y Motor: Moving to 60.7426 mm, started at 59.9106 mm, delta = 0.8320 mm
17-03-18 04:04:12.634 -07 000000561 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:04:12.644 -07 000000579 INF: Z Motor: Entering MoveAbsStepped (DAC = 30329, sync = True, waitForSettling = False)
17-03-18 04:04:12.644 -07 000000579 INF: Z Motor: Moving to -0.138837 mm, started at -0.132439 mm, distance = -6.40 um
17-03-18 04:04:12.644 -07 000000590 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 04:04:12.644 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:04:12.644 -07 000000480 INF: FPGA: Recv YRDPOS 122697
17-03-18 04:04:12.654 -07 000000012 INF: FPGA: 'YRDPOS' command took 1 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:04:12.654 -07 000000012 INF: Y Motor: Encoder = 122697 = motor step 95857.0 = 59.9106 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:04:12.654 -07 000000012 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:04:12.654 -07 000000012 INF: Y Motor: Moving 1331 steps2
17-03-18 04:04:12.654 -07 000000590 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:04:12.664 -07 000000579 INF: FPGA: Xmit ZDACW 30329\n [Z Motor]
17-03-18 04:04:12.664 -07 000000561 INF: FPGA: Recv ZDACW
17-03-18 04:04:12.674 -07 000000012 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:04:12.674 -07 000000579 INF: FPGA: 'ZDACW 30329' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 04:04:12.684 -07 000000579 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:04:12.684 -07 000000512 INF: FPGA: Recv ZDACR 30329
17-03-18 04:04:12.694 -07 000000579 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 04:04:12.694 -07 000000579 INF: Z Motor: MoveAbsStepped took 50 ms (did NOT wait for settling yet))
17-03-18 04:04:12.854 -07 000000561 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:04:12.854 -07 000000590 INF: FPGA: 'FOCMRRFOC' command took 3 ms to send, 195 ms to get response, and 214 ms overall
17-03-18 04:04:12.954 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 398 ms.
17-03-18 04:04:12.954 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 398 ms.
17-03-18 04:04:12.954 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 04:04:12.954 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:04:12.954 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 04:04:12.954 -07 000000625 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:04:12.954 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:04:12.954 -07 000000625 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:04:12.954 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 520 ms.
17-03-18 04:04:12.964 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 417 ms.
17-03-18 04:04:13.044 -07 000000608 INF: FPGA: Recv YMVTILE
17-03-18 04:04:13.044 -07 000000012 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 395 ms overall
17-03-18 04:04:13.084 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:04:13.094 -07 000000501 INF: FPGA: Recv YRDPOS 124380
17-03-18 04:04:13.094 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 04:04:13.094 -07 000000012 INF: Y Motor: Encoder = 124380 = motor step 97171.9 = 60.7324 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:04:13.094 -07 000000012 INF: Y Motor: Position error before settling (table move) = -21 encoder counts (-0.010 mm)
17-03-18 04:04:13.094 -07 000000012 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.832 mm, average velocity = 2.096 mm/sec
17-03-18 04:04:13.884 -07 000000444 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 120, FrontChillerTemperature: 4.042558,
17-03-18 04:04:14.044 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:04:14.044 -07 000000512 INF: FPGA: Recv YRDPOS 124380
17-03-18 04:04:14.054 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:04:14.054 -07 000000012 INF: Y Motor: Encoder = 124380 = motor step 97171.9 = 60.7324 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:04:14.084 -07 000000012 INF: Y Motor: After move to 60.742607, error = -0.010185, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:04:14.084 -07 000000012 INF: Y Motor: Position error after settling (table move) = -21 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:04:14.084 -07 000000012 INF: Y Motor: Moved to 60.7324 after 1442 ms (table move)
17-03-18 04:04:14.084 -07 000000437 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138837 mm (DAC = 30329)
17-03-18 04:04:14.084 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:14.084 -07 000000625 INF: FPGA: Recv ZSGSRD 30906
17-03-18 04:04:14.094 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 04:04:14.094 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:14.094 -07 000000590 INF: FPGA: Recv ZSGSRD 30908
17-03-18 04:04:14.104 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:14.104 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:14.104 -07 000000501 INF: FPGA: Recv ZSGSRD 30902
17-03-18 04:04:14.114 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:14.114 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:14.114 -07 000000444 INF: FPGA: Recv ZSGSRD 30902
17-03-18 04:04:14.124 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:14.124 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:14.124 -07 000000608 INF: FPGA: Recv ZSGSRD 30903
17-03-18 04:04:14.134 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:14.134 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:14.134 -07 000000012 INF: FPGA: Recv ZSGSRD 30901
17-03-18 04:04:14.144 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:14.144 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:14.144 -07 000000501 INF: FPGA: Recv ZSGSRD 30901
17-03-18 04:04:14.154 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:14.154 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:14.154 -07 000000618 INF: FPGA: Recv ZSGSRD 30898
17-03-18 04:04:14.164 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:14.164 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:14.164 -07 000000608 INF: FPGA: Recv ZSGSRD 30905
17-03-18 04:04:14.174 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:14.174 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:14.174 -07 000000012 INF: FPGA: Recv ZSGSRD 30906
17-03-18 04:04:14.184 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:14.184 -07 000000437 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:04:14.184 -07 000000590 INF: FPGA: Recv ZPIEZORD 26572
17-03-18 04:04:14.194 -07 000000437 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:14.194 -07 000000437 INF: Z Motor: Piezo is near 36.8 V (nominally 0 to 100 V), expect near 46.3 V, since DAC is at 4.628 V. Piezo Error = -9.5 V.
17-03-18 04:04:14.194 -07 000000437 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.8 um, Read 10 ADC samples: Avg = 30903 (-138.1 uncal um), Error = 0.8 uncal um, Median = 30902 (-138.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 30898 (-138.0 uncal um), Max = 30908 (-138.1 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 04:04:14.194 -07 000000437 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30903, posNoise = 5, negNoise = 5
17-03-18 04:04:14.194 -07 000000437 INF: Z Motor: After move to -0.138837, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:04:14.194 -07 000000437 INF: Z Motor: Settle wait time = 1445 ms, measure time = 105 ms (allowed 150 ms), total time = 1550 ms
17-03-18 04:04:14.194 -07 000000437 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 04:04:14.244 -07 000000437 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1603 ms
17-03-18 04:04:14.244 -07 000000437 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:04:14.244 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:04:14.244 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:04:14.244 -07 000000611 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:04:14.244 -07 000000455 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:04:14.244 -07 000000625 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:04:14.244 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:04:14.254 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:04:14.254 -07 000000625 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:04:14.254 -07 000000625 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 04:04:14.254 -07 000000625 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:04:14.264 -07 000000625 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 04:04:14.264 -07 000000625 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-18 04:04:14.264 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:04:14.314 -07 000000487 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:04:14.614 -07 000000487 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:04:14.614 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:04:14.614 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:04:14.614 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2334002848, 0x0, 559484976) start.
17-03-18 04:04:14.654 -07 000000579 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:04:14.654 -07 000000608 INF: FPGA: Recv CAMSNAP
17-03-18 04:04:14.654 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 382 ms to get response, and 384 ms overall
17-03-18 04:04:14.744 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2334002848, 0x0, 559484976) end. Duration was 126 ms.
17-03-18 04:04:14.744 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:04:14.744 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 04:04:14.744 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-18 04:04:14.754 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:04:14.754 -07 000000625 INF: Autofocus start
17-03-18 04:04:14.754 -07 000000625 INF: MeasureProfile start
17-03-18 04:04:14.754 -07 000000444 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:04:14.764 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:04:14.764 -07 000000501 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:04:14.764 -07 000000625 INF: MeasureProfile done
17-03-18 04:04:14.764 -07 000000625 INF: X=16  Z correction [um]=0.0530179
17-03-18 04:04:14.764 -07 000000625 INF: Autofocus finished
17-03-18 04:04:14.964 -07 000000512 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:04:14.964 -07 000000501 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:04:14.964 -07 000000610 INF: ------------ Scan Snapping tile 2 at Y-position 60.732421875, Z-position -0.138850779827974. ----------
17-03-18 04:04:14.964 -07 000000610 INF: Cycle	120	Tile	2	Exposure Settings		A	414	G	199	T	199	C	414
17-03-18 04:04:14.974 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28853, sync = True, waitForSettling = True)
17-03-18 04:04:14.974 -07 000000610 INF: Z Motor: Moving to -0.132081 mm, started at -0.138851 mm, distance = 6.77 um
17-03-18 04:04:14.974 -07 000000610 INF: FPGA: Xmit ZDACW 28853\n [Z Motor]
17-03-18 04:04:14.974 -07 000000590 INF: FPGA: Recv ZDACW
17-03-18 04:04:14.984 -07 000000610 INF: FPGA: 'ZDACW 28853' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 04:04:14.984 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:04:14.984 -07 000000608 INF: FPGA: Recv ZDACR 28853
17-03-18 04:04:14.994 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:14.994 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:04:15.144 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:15.144 -07 000000561 INF: FPGA: Recv ZSGSRD 29854
17-03-18 04:04:15.154 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:04:15.154 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:15.154 -07 000000444 INF: FPGA: Recv ZSGSRD 29848
17-03-18 04:04:15.164 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:15.164 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:15.164 -07 000000480 INF: FPGA: Recv ZSGSRD 29854
17-03-18 04:04:15.174 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:15.174 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:15.174 -07 000000608 INF: FPGA: Recv ZSGSRD 29850
17-03-18 04:04:15.184 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:15.184 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:15.184 -07 000000561 INF: FPGA: Recv ZSGSRD 29852
17-03-18 04:04:15.194 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:15.194 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:15.194 -07 000000444 INF: FPGA: Recv ZSGSRD 29852
17-03-18 04:04:15.204 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:15.204 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:15.204 -07 000000625 INF: FPGA: Recv ZSGSRD 29841
17-03-18 04:04:15.214 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:15.214 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:15.214 -07 000000480 INF: FPGA: Recv ZSGSRD 29851
17-03-18 04:04:15.224 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 04:04:15.224 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:15.224 -07 000000437 INF: FPGA: Recv ZSGSRD 29852
17-03-18 04:04:15.234 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:15.234 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:15.234 -07 000000579 INF: FPGA: Recv ZSGSRD 29848
17-03-18 04:04:15.244 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:15.244 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:04:15.244 -07 000000611 INF: FPGA: Recv ZPIEZORD 25206
17-03-18 04:04:15.254 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:15.254 -07 000000610 INF: Z Motor: Piezo is near 33.8 V (nominally 0 to 100 V), expect near 44.0 V, since DAC is at 4.403 V. Piezo Error = -10.2 V.
17-03-18 04:04:15.254 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.1 um, Read 10 ADC samples: Avg = 29850 (-131.3 uncal um), Error = 0.8 uncal um, Median = 29852 (-131.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 29841 (-131.2 uncal um), Max = 29854 (-131.3 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-18 04:04:15.254 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29850, posNoise = 4, negNoise = 9
17-03-18 04:04:15.254 -07 000000610 INF: Z Motor: After move to -0.132081, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:04:15.254 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 04:04:15.254 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:04:15.254 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:04:15.254 -07 000000455 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:04:15.254 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:04:15.254 -07 000000625 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:04:15.254 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:04:15.254 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:04:15.254 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:04:15.254 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:04:15.254 -07 000000625 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:04:15.254 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:04:15.254 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:04:15.254 -07 000000625 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 04:04:15.254 -07 000000625 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:04:15.264 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 04:04:15.264 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:04:15.274 -07 000000625 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 14 ms.
17-03-18 04:04:15.274 -07 000000625 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 19 ms.
17-03-18 04:04:15.274 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms.
17-03-18 04:04:15.274 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 04:04:15.274 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 414 414 199 199 29030 150\n [Camera]
17-03-18 04:04:15.484 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:04:15.894 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 606
17-03-18 04:04:15.894 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 606
17-03-18 04:04:15.894 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:04:15.894 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 606
17-03-18 04:04:15.894 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 606
17-03-18 04:04:15.894 -07 000000487 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:04:15.904 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:04:15.904 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-18 04:04:15.904 -07 000000487 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:04:15.904 -07 000000487 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) start.
17-03-18 04:04:16.084 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29030 800
17-03-18 04:04:16.234 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning grn on 949
17-03-18 04:04:16.294 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 396 ms.
17-03-18 04:04:16.294 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 04:04:16.294 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:04:16.304 -07 000000487 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) end. Duration was 397 ms.
17-03-18 04:04:16.304 -07 000000487 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-18 04:04:16.304 -07 000000487 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:04:16.304 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:04:16.304 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-18 04:04:16.304 -07 000000487 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:04:16.314 -07 000000487 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-18 04:04:16.434 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1148
17-03-18 04:04:16.434 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1148
17-03-18 04:04:16.434 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:04:16.544 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1148
17-03-18 04:04:16.544 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1148
17-03-18 04:04:16.544 -07 000000437 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:04:16.554 -07 000000437 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:04:16.554 -07 000000437 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-18 04:04:16.554 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:04:16.554 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-18 04:04:16.624 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP 1341
17-03-18 04:04:16.624 -07 000000444 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:04:16.624 -07 000000610 INF: FPGA: 'CAMDBLSNAP 414 414 199 199 29030 150' command took 2 ms to send, 1339 ms to get response, and 1350 ms overall
17-03-18 04:04:16.634 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 04:04:16.634 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 3 at Y-position 60.732421875, Z-Position -0.1320860844427. ------
17-03-18 04:04:16.634 -07 000000455 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:04:16.634 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 119. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1710, R2=1777, Total=3487. Warn if over 250 bubbles per interval.
17-03-18 04:04:16.634 -07 000000012 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:04:16.634 -07 000000608 INF: Y Motor: MoveYZ optimized starting. Moving Y to 61.5726 mm, moving Z to -0.13885 mm
17-03-18 04:04:16.634 -07 000000608 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:04:16.634 -07 000000444 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:04:16.634 -07 000000501 INF: Y Motor: Entering MoveAbsStepped (target = 98516 steps, sync = True, waitForSettling = True)
17-03-18 04:04:16.634 -07 000000501 INF: Y Motor: Moving to 61.5726 mm, started at 60.7324 mm, delta = 0.8402 mm
17-03-18 04:04:16.644 -07 000000012 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 04:04:16.644 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:04:16.644 -07 000000561 INF: Z Motor: Entering MoveAbsStepped (DAC = 30332, sync = True, waitForSettling = False)
17-03-18 04:04:16.644 -07 000000561 INF: Z Motor: Moving to -0.138851 mm, started at -0.132086 mm, distance = -6.76 um
17-03-18 04:04:16.644 -07 000000480 INF: FPGA: Recv YRDPOS 124380
17-03-18 04:04:16.654 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:04:16.654 -07 000000501 INF: Y Motor: Encoder = 124380 = motor step 97171.9 = 60.7324 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:04:16.654 -07 000000561 INF: FPGA: Xmit ZDACW 30332\n [Z Motor]
17-03-18 04:04:16.654 -07 000000501 INF: Y Motor: Last commanded position = 60.7426 mm (97188.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:04:16.654 -07 000000501 INF: Y Motor: Moving 1344 steps-21
17-03-18 04:04:16.654 -07 000000625 INF: FPGA: Recv ZDACW
17-03-18 04:04:16.664 -07 000000012 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:04:16.664 -07 000000561 INF: FPGA: 'ZDACW 30332' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-18 04:04:16.674 -07 000000501 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:04:16.684 -07 000000561 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:04:16.684 -07 000000480 INF: FPGA: Recv ZDACR 30332
17-03-18 04:04:16.694 -07 000000561 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 04:04:16.694 -07 000000561 INF: Z Motor: MoveAbsStepped took 49 ms (did NOT wait for settling yet))
17-03-18 04:04:16.864 -07 000000618 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:04:16.864 -07 000000012 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 04:04:16.954 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 401 ms.
17-03-18 04:04:16.954 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 04:04:16.954 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:04:16.954 -07 000000437 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 401 ms.
17-03-18 04:04:16.954 -07 000000437 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-18 04:04:16.954 -07 000000437 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:04:16.964 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:04:16.964 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 522 ms.
17-03-18 04:04:16.964 -07 000000437 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:04:16.964 -07 000000437 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 420 ms.
17-03-18 04:04:17.044 -07 000000487 INF: FPGA: Recv YMVTILE
17-03-18 04:04:17.044 -07 000000501 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 395 ms overall
17-03-18 04:04:17.094 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:04:17.094 -07 000000618 INF: FPGA: Recv YRDPOS 126081
17-03-18 04:04:17.104 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 04:04:17.104 -07 000000501 INF: Y Motor: Encoder = 126081 = motor step 98500.8 = 61.5630 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:04:17.104 -07 000000501 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-18 04:04:17.104 -07 000000501 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.840 mm, average velocity = 2.116 mm/sec
17-03-18 04:04:18.054 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:04:18.054 -07 000000012 INF: FPGA: Recv YRDPOS 126081
17-03-18 04:04:18.064 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:18.064 -07 000000501 INF: Y Motor: Encoder = 126081 = motor step 98500.8 = 61.5630 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:04:18.084 -07 000000501 INF: Y Motor: After move to 61.572609, error = -0.009621, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:04:18.084 -07 000000501 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:04:18.084 -07 000000501 INF: Y Motor: Moved to 61.5630 after 1450 ms (table move)
17-03-18 04:04:18.094 -07 000000608 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138851 mm (DAC = 30332)
17-03-18 04:04:18.094 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:18.094 -07 000000611 INF: FPGA: Recv ZSGSRD 30917
17-03-18 04:04:18.104 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:04:18.104 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:18.104 -07 000000625 INF: FPGA: Recv ZSGSRD 30901
17-03-18 04:04:18.114 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:18.114 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:18.114 -07 000000579 INF: FPGA: Recv ZSGSRD 30904
17-03-18 04:04:18.124 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:18.124 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:18.124 -07 000000455 INF: FPGA: Recv ZSGSRD 30908
17-03-18 04:04:18.134 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:18.134 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:18.134 -07 000000611 INF: FPGA: Recv ZSGSRD 30909
17-03-18 04:04:18.144 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:18.144 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:18.144 -07 000000579 INF: FPGA: Recv ZSGSRD 30908
17-03-18 04:04:18.154 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:18.154 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:18.154 -07 000000625 INF: FPGA: Recv ZSGSRD 30898
17-03-18 04:04:18.164 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:18.164 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:18.164 -07 000000444 INF: FPGA: Recv ZSGSRD 30896
17-03-18 04:04:18.174 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:18.174 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:18.174 -07 000000447 INF: FPGA: Recv ZSGSRD 30904
17-03-18 04:04:18.184 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 04:04:18.184 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:18.184 -07 000000590 INF: FPGA: Recv ZSGSRD 30910
17-03-18 04:04:18.194 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:18.194 -07 000000608 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:04:18.194 -07 000000618 INF: FPGA: Recv ZPIEZORD 26621
17-03-18 04:04:18.204 -07 000000608 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:18.204 -07 000000608 INF: Z Motor: Piezo is near 36.9 V (nominally 0 to 100 V), expect near 46.3 V, since DAC is at 4.628 V. Piezo Error = -9.4 V.
17-03-18 04:04:18.204 -07 000000608 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.9 um, Read 10 ADC samples: Avg = 30906 (-138.1 uncal um), Error = 0.8 uncal um, Median = 30906 (-138.1 uncal um), StdDev = 6 (0.0 uncal um), Range = 21 (0.1 uncal um), Min = 30896 (-138.0 uncal um), Max = 30917 (-138.1 uncal um), Pos Noise = 11 (0.1 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-18 04:04:18.204 -07 000000608 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30906, posNoise = 11, negNoise = 10
17-03-18 04:04:18.204 -07 000000608 INF: Z Motor: After move to -0.138851, error = -0.000019, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:04:18.204 -07 000000608 INF: Z Motor: Settle wait time = 1452 ms, measure time = 107 ms (allowed 150 ms), total time = 1559 ms
17-03-18 04:04:18.204 -07 000000608 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-18 04:04:18.254 -07 000000608 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1614 ms
17-03-18 04:04:18.254 -07 000000608 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:04:18.254 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:04:18.254 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:04:18.254 -07 000000590 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:04:18.254 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:04:18.254 -07 000000447 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:04:18.254 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:04:18.254 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:04:18.254 -07 000000447 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:04:18.264 -07 000000447 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 04:04:18.264 -07 000000447 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:04:18.274 -07 000000447 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 04:04:18.274 -07 000000447 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms.
17-03-18 04:04:18.274 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:04:18.324 -07 000000447 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:04:18.624 -07 000000579 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:04:18.624 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:04:18.624 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:04:18.624 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2334002848, 0x0, 559484976) start.
17-03-18 04:04:18.664 -07 000000611 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:04:18.664 -07 000000590 INF: FPGA: Recv CAMSNAP
17-03-18 04:04:18.664 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 382 ms to get response, and 384 ms overall
17-03-18 04:04:18.744 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2334002848, 0x0, 559484976) end. Duration was 118 ms.
17-03-18 04:04:18.744 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:04:18.744 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 04:04:18.744 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 121 ms.
17-03-18 04:04:18.764 -07 000000480 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:04:18.764 -07 000000579 INF: Autofocus start
17-03-18 04:04:18.764 -07 000000579 INF: MeasureProfile start
17-03-18 04:04:18.764 -07 000000611 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:04:18.774 -07 000000480 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:04:18.774 -07 000000480 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:04:18.774 -07 000000579 INF: MeasureProfile done
17-03-18 04:04:18.774 -07 000000579 INF: X=-16  Z correction [um]=-0.08128808
17-03-18 04:04:18.774 -07 000000579 INF: Autofocus finished
17-03-18 04:04:18.974 -07 000000611 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:04:18.974 -07 000000480 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:04:18.974 -07 000000610 INF: ------------ Scan Snapping tile 3 at Y-position 61.56298828125, Z-position -0.138870052464399. ----------
17-03-18 04:04:18.974 -07 000000610 INF: Cycle	120	Tile	3	Exposure Settings		A	414	G	199	T	199	C	414
17-03-18 04:04:18.984 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28827, sync = True, waitForSettling = True)
17-03-18 04:04:18.984 -07 000000610 INF: Z Motor: Moving to -0.131962 mm, started at -0.138870 mm, distance = 6.91 um
17-03-18 04:04:18.984 -07 000000610 INF: FPGA: Xmit ZDACW 28827\n [Z Motor]
17-03-18 04:04:18.984 -07 000000437 INF: FPGA: Recv ZDACW
17-03-18 04:04:18.994 -07 000000610 INF: FPGA: 'ZDACW 28827' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:18.994 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:04:18.994 -07 000000444 INF: FPGA: Recv ZDACR 28827
17-03-18 04:04:19.004 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:19.004 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:04:19.154 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:19.154 -07 000000444 INF: FPGA: Recv ZSGSRD 29833
17-03-18 04:04:19.164 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:04:19.164 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:19.164 -07 000000512 INF: FPGA: Recv ZSGSRD 29830
17-03-18 04:04:19.174 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:19.174 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:19.174 -07 000000480 INF: FPGA: Recv ZSGSRD 29833
17-03-18 04:04:19.184 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:19.184 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:19.184 -07 000000561 INF: FPGA: Recv ZSGSRD 29826
17-03-18 04:04:19.194 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:19.194 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:19.194 -07 000000444 INF: FPGA: Recv ZSGSRD 29830
17-03-18 04:04:19.204 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:19.204 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:19.204 -07 000000012 INF: FPGA: Recv ZSGSRD 29822
17-03-18 04:04:19.214 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:19.214 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:19.214 -07 000000437 INF: FPGA: Recv ZSGSRD 29824
17-03-18 04:04:19.224 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:19.224 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:19.224 -07 000000561 INF: FPGA: Recv ZSGSRD 29837
17-03-18 04:04:19.234 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:19.244 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:19.244 -07 000000561 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 120, FrontChillerTemperature: 4.030322,
17-03-18 04:04:19.244 -07 000000590 INF: FPGA: Recv ZSGSRD 29829
17-03-18 04:04:19.254 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 04:04:19.264 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:19.264 -07 000000561 INF: FPGA: Recv ZSGSRD 29830
17-03-18 04:04:19.274 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 04:04:19.284 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:04:19.284 -07 000000455 INF: FPGA: Recv ZPIEZORD 25250
17-03-18 04:04:19.294 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 04:04:19.294 -07 000000610 INF: Z Motor: Piezo is near 33.9 V (nominally 0 to 100 V), expect near 44.0 V, since DAC is at 4.399 V. Piezo Error = -10.0 V.
17-03-18 04:04:19.294 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.0 um, Read 10 ADC samples: Avg = 29829 (-131.2 uncal um), Error = 0.8 uncal um, Median = 29830 (-131.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 29822 (-131.1 uncal um), Max = 29837 (-131.2 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 04:04:19.294 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29829, posNoise = 8, negNoise = 7
17-03-18 04:04:19.294 -07 000000610 INF: Z Motor: After move to -0.131962, error = 0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:04:19.294 -07 000000610 INF: Z Motor: MoveAbsStepped took 311 ms)
17-03-18 04:04:19.294 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:04:19.294 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:04:19.294 -07 000000625 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:04:19.294 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:04:19.294 -07 000000437 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:04:19.294 -07 000000012 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:04:19.294 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:04:19.294 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:04:19.294 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 04:04:19.294 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 04:04:19.294 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:04:19.294 -07 000000625 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:04:19.304 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 04:04:19.304 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:04:19.304 -07 000000625 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 04:04:19.304 -07 000000625 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:04:19.314 -07 000000625 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 04:04:19.314 -07 000000625 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 04:04:19.314 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 04:04:19.314 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 04:04:19.314 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 414 414 199 199 29004 150\n [Camera]
17-03-18 04:04:19.514 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:04:19.924 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 606
17-03-18 04:04:19.924 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 606
17-03-18 04:04:19.924 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:04:19.934 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 606
17-03-18 04:04:19.934 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 606
17-03-18 04:04:19.934 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:04:19.934 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:04:19.934 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-18 04:04:19.944 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:04:19.944 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) start.
17-03-18 04:04:20.124 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29004 799
17-03-18 04:04:20.264 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP turning grn on 949
17-03-18 04:04:20.304 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) end. Duration was 366 ms.
17-03-18 04:04:20.304 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 366 ms.
17-03-18 04:04:20.304 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:04:20.314 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:04:20.314 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 374 ms.
17-03-18 04:04:20.314 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 375 ms.
17-03-18 04:04:20.314 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:04:20.314 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:04:20.424 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 495 ms.
17-03-18 04:04:20.424 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 493 ms.
17-03-18 04:04:20.464 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1148
17-03-18 04:04:20.464 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1148
17-03-18 04:04:20.474 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:04:20.474 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1148
17-03-18 04:04:20.474 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1148
17-03-18 04:04:20.474 -07 000000625 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:04:20.474 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:04:20.474 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-18 04:04:20.484 -07 000000625 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:04:20.484 -07 000000625 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-18 04:04:20.664 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP 1340
17-03-18 04:04:20.664 -07 000000590 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:04:20.664 -07 000000610 INF: FPGA: 'CAMDBLSNAP 414 414 199 199 29004 150' command took 2 ms to send, 1341 ms to get response, and 1347 ms overall
17-03-18 04:04:20.664 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 04:04:20.664 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 4 at Y-position 61.56298828125, Z-Position -0.131951175987723. ------
17-03-18 04:04:20.664 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:04:20.664 -07 000000611 INF: Y Motor: MoveYZ optimized starting. Moving Y to 62.4026 mm, moving Z to -0.13831 mm
17-03-18 04:04:20.664 -07 000000611 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:04:20.664 -07 000000561 INF: Y Motor: Entering MoveAbsStepped (target = 99844 steps, sync = True, waitForSettling = True)
17-03-18 04:04:20.664 -07 000000480 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:04:20.674 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:04:20.674 -07 000000561 INF: Y Motor: Moving to 62.4026 mm, started at 61.5630 mm, delta = 0.8396 mm
17-03-18 04:04:20.674 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:04:20.674 -07 000000579 INF: Z Motor: Entering MoveAbsStepped (DAC = 30214, sync = True, waitForSettling = False)
17-03-18 04:04:20.674 -07 000000579 INF: Z Motor: Moving to -0.138311 mm, started at -0.131951 mm, distance = -6.36 um
17-03-18 04:04:20.674 -07 000000512 INF: FPGA: Recv YRDPOS 126082
17-03-18 04:04:20.684 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 04:04:20.684 -07 000000561 INF: Y Motor: Encoder = 126082 = motor step 98501.6 = 61.5635 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:04:20.684 -07 000000579 INF: FPGA: Xmit ZDACW 30214\n [Z Motor]
17-03-18 04:04:20.684 -07 000000437 INF: FPGA: Recv ZDACW
17-03-18 04:04:20.684 -07 000000561 INF: Y Motor: Last commanded position = 61.5726 mm (98516.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:04:20.684 -07 000000561 INF: Y Motor: Moving 1343 steps-20
17-03-18 04:04:20.694 -07 000000501 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:04:20.694 -07 000000579 INF: FPGA: 'ZDACW 30214' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-18 04:04:20.704 -07 000000561 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:04:20.714 -07 000000579 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:04:20.714 -07 000000447 INF: FPGA: Recv ZDACR 30214
17-03-18 04:04:20.724 -07 000000579 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 04:04:20.724 -07 000000579 INF: Z Motor: MoveAbsStepped took 46 ms (did NOT wait for settling yet))
17-03-18 04:04:20.864 -07 000000625 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 381 ms.
17-03-18 04:04:20.864 -07 000000625 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 381 ms.
17-03-18 04:04:20.864 -07 000000625 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:04:20.864 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 382 ms.
17-03-18 04:04:20.864 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-18 04:04:20.864 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:04:20.864 -07 000000625 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:04:20.864 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:04:20.864 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 04:04:20.874 -07 000000625 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 04:04:20.894 -07 000000447 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:04:20.894 -07 000000501 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 220 ms overall
17-03-18 04:04:21.084 -07 000000455 INF: FPGA: Recv YMVTILE
17-03-18 04:04:21.084 -07 000000561 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 370 ms to get response, and 395 ms overall
17-03-18 04:04:21.124 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:04:21.134 -07 000000437 INF: FPGA: Recv YRDPOS 127785
17-03-18 04:04:21.134 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 04:04:21.134 -07 000000561 INF: Y Motor: Encoder = 127785 = motor step 99832.0 = 62.3950 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:04:21.134 -07 000000561 INF: Y Motor: Position error before settling (table move) = -16 encoder counts (-0.008 mm)
17-03-18 04:04:21.134 -07 000000561 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 395 ms, distance = 0.840 mm, average velocity = 2.126 mm/sec
17-03-18 04:04:21.634 -07 000000447 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:04:21.634 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 119. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1710, R2=1777, Total=3487. Warn if over 250 bubbles per interval.
17-03-18 04:04:22.084 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:04:22.084 -07 000000012 INF: FPGA: Recv YRDPOS 127785
17-03-18 04:04:22.094 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:22.094 -07 000000561 INF: Y Motor: Encoder = 127785 = motor step 99832.0 = 62.3950 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:04:22.114 -07 000000561 INF: Y Motor: After move to 62.402607, error = -0.007587, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:04:22.114 -07 000000561 INF: Y Motor: Position error after settling (table move) = -16 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:04:22.114 -07 000000561 INF: Y Motor: Moved to 62.3950 after 1450 ms (table move)
17-03-18 04:04:22.124 -07 000000611 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138311 mm (DAC = 30214)
17-03-18 04:04:22.124 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:22.124 -07 000000579 INF: FPGA: Recv ZSGSRD 30829
17-03-18 04:04:22.134 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:04:22.134 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:22.134 -07 000000590 INF: FPGA: Recv ZSGSRD 30819
17-03-18 04:04:22.144 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:22.144 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:22.144 -07 000000501 INF: FPGA: Recv ZSGSRD 30810
17-03-18 04:04:22.154 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:22.154 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:22.154 -07 000000501 INF: FPGA: Recv ZSGSRD 30811
17-03-18 04:04:22.164 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:22.164 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:22.164 -07 000000487 INF: FPGA: Recv ZSGSRD 30820
17-03-18 04:04:22.174 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:22.174 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:22.174 -07 000000561 INF: FPGA: Recv ZSGSRD 30820
17-03-18 04:04:22.184 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:22.184 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:22.184 -07 000000579 INF: FPGA: Recv ZSGSRD 30826
17-03-18 04:04:22.194 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:22.194 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:22.194 -07 000000444 INF: FPGA: Recv ZSGSRD 30823
17-03-18 04:04:22.204 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:22.204 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:22.204 -07 000000501 INF: FPGA: Recv ZSGSRD 30816
17-03-18 04:04:22.214 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:22.214 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:22.214 -07 000000455 INF: FPGA: Recv ZSGSRD 30820
17-03-18 04:04:22.224 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:22.224 -07 000000611 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:04:22.224 -07 000000579 INF: FPGA: Recv ZPIEZORD 26569
17-03-18 04:04:22.234 -07 000000611 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:22.234 -07 000000611 INF: Z Motor: Piezo is near 36.8 V (nominally 0 to 100 V), expect near 46.1 V, since DAC is at 4.610 V. Piezo Error = -9.3 V.
17-03-18 04:04:22.234 -07 000000611 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.3 um, Read 10 ADC samples: Avg = 30819 (-137.5 uncal um), Error = 0.8 uncal um, Median = 30820 (-137.5 uncal um), StdDev = 6 (0.0 uncal um), Range = 19 (0.1 uncal um), Min = 30810 (-137.5 uncal um), Max = 30829 (-137.6 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-18 04:04:22.234 -07 000000611 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30819, posNoise = 10, negNoise = 9
17-03-18 04:04:22.234 -07 000000611 INF: Z Motor: After move to -0.138311, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:04:22.234 -07 000000611 INF: Z Motor: Settle wait time = 1449 ms, measure time = 107 ms (allowed 150 ms), total time = 1556 ms
17-03-18 04:04:22.234 -07 000000611 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-18 04:04:22.284 -07 000000611 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1613 ms
17-03-18 04:04:22.284 -07 000000611 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:04:22.284 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:04:22.284 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:04:22.284 -07 000000455 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:04:22.284 -07 000000608 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:04:22.284 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:04:22.284 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:04:22.284 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:04:22.284 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:04:22.294 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 04:04:22.294 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:04:22.304 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-18 04:04:22.304 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-18 04:04:22.304 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:04:22.354 -07 000000012 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:04:22.644 -07 000000501 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:04:22.644 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:04:22.654 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:04:22.654 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2334002848, 0x0, 559484976) start.
17-03-18 04:04:22.684 -07 000000487 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:04:22.684 -07 000000512 INF: FPGA: Recv CAMSNAP
17-03-18 04:04:22.684 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 379 ms to get response, and 384 ms overall
17-03-18 04:04:22.764 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2334002848, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 04:04:22.764 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:04:22.764 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 04:04:22.764 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 04:04:22.794 -07 000000501 INF: Autofocus start
17-03-18 04:04:22.794 -07 000000501 INF: MeasureProfile start
17-03-18 04:04:22.794 -07 000000447 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:04:22.794 -07 000000608 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:04:22.804 -07 000000447 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 04:04:22.804 -07 000000447 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:04:22.804 -07 000000501 INF: MeasureProfile done
17-03-18 04:04:22.804 -07 000000501 INF: X=32  Z correction [um]=0.1299841
17-03-18 04:04:22.804 -07 000000501 INF: Autofocus finished
17-03-18 04:04:23.004 -07 000000561 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:04:23.004 -07 000000447 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 195 ms to get response, and 205 ms overall
17-03-18 04:04:23.004 -07 000000610 INF: ------------ Scan Snapping tile 4 at Y-position 62.39501953125, Z-position -0.138311146008066. ----------
17-03-18 04:04:23.014 -07 000000610 INF: Cycle	120	Tile	4	Exposure Settings		A	414	G	199	T	199	C	414
17-03-18 04:04:23.014 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28755, sync = True, waitForSettling = True)
17-03-18 04:04:23.014 -07 000000610 INF: Z Motor: Moving to -0.131632 mm, started at -0.138311 mm, distance = 6.68 um
17-03-18 04:04:23.014 -07 000000610 INF: FPGA: Xmit ZDACW 28755\n [Z Motor]
17-03-18 04:04:23.014 -07 000000437 INF: FPGA: Recv ZDACW
17-03-18 04:04:23.024 -07 000000610 INF: FPGA: 'ZDACW 28755' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 04:04:23.024 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:04:23.024 -07 000000625 INF: FPGA: Recv ZDACR 28755
17-03-18 04:04:23.034 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:23.034 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:04:23.184 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:23.184 -07 000000444 INF: FPGA: Recv ZSGSRD 29780
17-03-18 04:04:23.194 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:04:23.194 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:23.194 -07 000000012 INF: FPGA: Recv ZSGSRD 29780
17-03-18 04:04:23.204 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:23.204 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:23.204 -07 000000611 INF: FPGA: Recv ZSGSRD 29778
17-03-18 04:04:23.214 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:23.214 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:23.214 -07 000000444 INF: FPGA: Recv ZSGSRD 29774
17-03-18 04:04:23.224 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:23.224 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:23.224 -07 000000480 INF: FPGA: Recv ZSGSRD 29782
17-03-18 04:04:23.234 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:23.234 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:23.234 -07 000000608 INF: FPGA: Recv ZSGSRD 29782
17-03-18 04:04:23.244 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:23.244 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:23.244 -07 000000444 INF: FPGA: Recv ZSGSRD 29781
17-03-18 04:04:23.254 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:23.254 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:23.254 -07 000000512 INF: FPGA: Recv ZSGSRD 29783
17-03-18 04:04:23.264 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:23.264 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:23.264 -07 000000480 INF: FPGA: Recv ZSGSRD 29773
17-03-18 04:04:23.274 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:23.274 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:23.274 -07 000000437 INF: FPGA: Recv ZSGSRD 29779
17-03-18 04:04:23.284 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:23.284 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:04:23.284 -07 000000512 INF: FPGA: Recv ZPIEZORD 25207
17-03-18 04:04:23.294 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:23.294 -07 000000610 INF: Z Motor: Piezo is near 33.8 V (nominally 0 to 100 V), expect near 43.9 V, since DAC is at 4.388 V. Piezo Error = -10.0 V.
17-03-18 04:04:23.294 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.6 um, Read 10 ADC samples: Avg = 29779 (-130.8 uncal um), Error = 0.8 uncal um, Median = 29780 (-130.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29773 (-130.8 uncal um), Max = 29783 (-130.9 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 04:04:23.294 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29779, posNoise = 4, negNoise = 6
17-03-18 04:04:23.294 -07 000000610 INF: Z Motor: After move to -0.131632, error = 0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:04:23.294 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-18 04:04:23.294 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:04:23.294 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:04:23.294 -07 000000590 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:04:23.294 -07 000000437 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:04:23.294 -07 000000625 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:04:23.294 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:04:23.294 -07 000000447 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:04:23.294 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:04:23.294 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 04:04:23.294 -07 000000625 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:04:23.294 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:04:23.294 -07 000000447 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:04:23.304 -07 000000625 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 04:04:23.304 -07 000000625 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:04:23.304 -07 000000447 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 04:04:23.304 -07 000000447 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:04:23.314 -07 000000625 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 04:04:23.314 -07 000000625 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 04:04:23.314 -07 000000447 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 04:04:23.314 -07 000000447 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 04:04:23.314 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 414 414 199 199 28932 150\n [Camera]
17-03-18 04:04:23.514 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:04:23.924 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 606
17-03-18 04:04:23.924 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 606
17-03-18 04:04:23.924 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:04:23.934 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 606
17-03-18 04:04:23.934 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 606
17-03-18 04:04:23.934 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:04:23.934 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:04:23.934 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-18 04:04:23.934 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:04:23.934 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) start.
17-03-18 04:04:24.124 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28932 799
17-03-18 04:04:24.274 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning grn on 949
17-03-18 04:04:24.304 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) end. Duration was 371 ms.
17-03-18 04:04:24.304 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 371 ms.
17-03-18 04:04:24.304 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:04:24.314 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 376 ms.
17-03-18 04:04:24.314 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-18 04:04:24.314 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:04:24.314 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:04:24.314 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:04:24.314 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-18 04:04:24.324 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-18 04:04:24.474 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1148
17-03-18 04:04:24.474 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1148
17-03-18 04:04:24.474 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:04:24.474 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1148
17-03-18 04:04:24.474 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1148
17-03-18 04:04:24.474 -07 000000444 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:04:24.474 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:04:24.474 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-18 04:04:24.474 -07 000000444 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:04:24.474 -07 000000444 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-18 04:04:24.634 -07 000000447 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 120, FrontChillerTemperature: 4.004458,
17-03-18 04:04:24.664 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP 1341
17-03-18 04:04:24.664 -07 000000611 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:04:24.664 -07 000000610 INF: FPGA: 'CAMDBLSNAP 414 414 199 199 28932 150' command took 2 ms to send, 1341 ms to get response, and 1347 ms overall
17-03-18 04:04:24.664 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 04:04:24.664 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 5 at Y-position 62.39501953125, Z-Position -0.131629965380635. ------
17-03-18 04:04:24.664 -07 000000447 INF: Y Motor: MoveYZ optimized starting. Moving Y to 63.2326 mm, moving Z to -0.13844 mm
17-03-18 04:04:24.664 -07 000000447 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:04:24.674 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:04:24.674 -07 000000608 INF: Y Motor: Entering MoveAbsStepped (target = 101172 steps, sync = True, waitForSettling = True)
17-03-18 04:04:24.674 -07 000000608 INF: Y Motor: Moving to 63.2326 mm, started at 62.3950 mm, delta = 0.8376 mm
17-03-18 04:04:24.674 -07 000000590 INF: Z Motor: Entering MoveAbsStepped (DAC = 30243, sync = True, waitForSettling = False)
17-03-18 04:04:24.674 -07 000000590 INF: Z Motor: Moving to -0.138444 mm, started at -0.131630 mm, distance = -6.81 um
17-03-18 04:04:24.674 -07 000000487 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:04:24.684 -07 000000590 INF: FPGA: Xmit ZDACW 30243\n [Z Motor]
17-03-18 04:04:24.684 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-18 04:04:24.684 -07 000000437 INF: FPGA: Recv ZDACW
17-03-18 04:04:24.694 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:04:24.694 -07 000000590 INF: FPGA: 'ZDACW 30243' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-18 04:04:24.694 -07 000000480 INF: FPGA: Recv YRDPOS 127785
17-03-18 04:04:24.704 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-18 04:04:24.704 -07 000000608 INF: Y Motor: Encoder = 127785 = motor step 99832.0 = 62.3950 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:04:24.704 -07 000000608 INF: Y Motor: Last commanded position = 62.4026 mm (99844.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:04:24.704 -07 000000608 INF: Y Motor: Moving 1340 steps-16
17-03-18 04:04:24.704 -07 000000501 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:04:24.714 -07 000000590 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:04:24.714 -07 000000512 INF: FPGA: Recv ZDACR 30243
17-03-18 04:04:24.724 -07 000000590 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 04:04:24.724 -07 000000590 INF: Z Motor: MoveAbsStepped took 47 ms (did NOT wait for settling yet))
17-03-18 04:04:24.724 -07 000000608 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:04:24.874 -07 000000444 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 395 ms.
17-03-18 04:04:24.874 -07 000000444 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 04:04:24.874 -07 000000444 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:04:24.874 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 397 ms.
17-03-18 04:04:24.874 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 04:04:24.874 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:04:24.874 -07 000000444 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:04:24.884 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:04:24.884 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms.
17-03-18 04:04:24.884 -07 000000444 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-18 04:04:24.904 -07 000000480 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:04:24.904 -07 000000501 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 196 ms to get response, and 225 ms overall
17-03-18 04:04:25.094 -07 000000611 INF: FPGA: Recv YMVTILE
17-03-18 04:04:25.094 -07 000000608 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 04:04:25.144 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:04:25.154 -07 000000012 INF: FPGA: Recv YRDPOS 129481
17-03-18 04:04:25.154 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 04:04:25.154 -07 000000608 INF: Y Motor: Encoder = 129481 = motor step 101157.0 = 63.2231 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:04:25.154 -07 000000608 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm)
17-03-18 04:04:25.154 -07 000000608 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.838 mm, average velocity = 2.104 mm/sec
17-03-18 04:04:26.104 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:04:26.104 -07 000000012 INF: FPGA: Recv YRDPOS 129482
17-03-18 04:04:26.114 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:04:26.114 -07 000000608 INF: Y Motor: Encoder = 129482 = motor step 101157.8 = 63.2236 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:04:26.144 -07 000000608 INF: Y Motor: After move to 63.232609, error = -0.008976, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:04:26.144 -07 000000608 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 04:04:26.144 -07 000000608 INF: Y Motor: Moved to 63.2236 after 1467 ms (table move)
17-03-18 04:04:26.144 -07 000000447 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138444 mm (DAC = 30243)
17-03-18 04:04:26.144 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:26.144 -07 000000608 INF: FPGA: Recv ZSGSRD 30837
17-03-18 04:04:26.154 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 04:04:26.154 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:26.154 -07 000000012 INF: FPGA: Recv ZSGSRD 30838
17-03-18 04:04:26.164 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:26.164 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:26.164 -07 000000561 INF: FPGA: Recv ZSGSRD 30845
17-03-18 04:04:26.174 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:26.174 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:26.174 -07 000000608 INF: FPGA: Recv ZSGSRD 30844
17-03-18 04:04:26.184 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:26.184 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:26.184 -07 000000590 INF: FPGA: Recv ZSGSRD 30841
17-03-18 04:04:26.194 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 04:04:26.194 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:26.194 -07 000000480 INF: FPGA: Recv ZSGSRD 30843
17-03-18 04:04:26.204 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:26.204 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:26.204 -07 000000501 INF: FPGA: Recv ZSGSRD 30836
17-03-18 04:04:26.214 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:26.214 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:26.214 -07 000000608 INF: FPGA: Recv ZSGSRD 30836
17-03-18 04:04:26.224 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:26.224 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:26.224 -07 000000487 INF: FPGA: Recv ZSGSRD 30838
17-03-18 04:04:26.234 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:26.234 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:26.234 -07 000000561 INF: FPGA: Recv ZSGSRD 30838
17-03-18 04:04:26.244 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:26.244 -07 000000447 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:04:26.244 -07 000000512 INF: FPGA: Recv ZPIEZORD 26627
17-03-18 04:04:26.254 -07 000000447 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:26.254 -07 000000447 INF: Z Motor: Piezo is near 36.9 V (nominally 0 to 100 V), expect near 46.1 V, since DAC is at 4.615 V. Piezo Error = -9.3 V.
17-03-18 04:04:26.254 -07 000000447 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.4 um, Read 10 ADC samples: Avg = 30840 (-137.6 uncal um), Error = 0.8 uncal um, Median = 30838 (-137.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 30836 (-137.6 uncal um), Max = 30845 (-137.7 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 04:04:26.254 -07 000000447 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30840, posNoise = 5, negNoise = 4
17-03-18 04:04:26.254 -07 000000447 INF: Z Motor: After move to -0.138444, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:04:26.254 -07 000000447 INF: Z Motor: Settle wait time = 1472 ms, measure time = 105 ms (allowed 150 ms), total time = 1577 ms
17-03-18 04:04:26.254 -07 000000447 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 04:04:26.304 -07 000000447 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1633 ms
17-03-18 04:04:26.304 -07 000000447 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:04:26.304 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:04:26.304 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:04:26.304 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:04:26.304 -07 000000487 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:04:26.304 -07 000000444 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:04:26.304 -07 000000487 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:04:26.314 -07 000000487 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:04:26.314 -07 000000487 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:04:26.314 -07 000000487 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 04:04:26.314 -07 000000487 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:04:26.324 -07 000000487 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 04:04:26.324 -07 000000487 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-18 04:04:26.324 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:04:26.364 -07 000000444 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:04:26.634 -07 000000487 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:04:26.634 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 119. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1710, R2=1777, Total=3487. Warn if over 250 bubbles per interval.
17-03-18 04:04:26.664 -07 000000608 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:04:26.664 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:04:26.664 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:04:26.674 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2334002848, 0x0, 559484976) start.
17-03-18 04:04:26.704 -07 000000480 INF: FPGA: Recv @CAMSNAP 381
17-03-18 04:04:26.704 -07 000000501 INF: FPGA: Recv CAMSNAP
17-03-18 04:04:26.704 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 379 ms to get response, and 386 ms overall
17-03-18 04:04:26.784 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2334002848, 0x0, 559484976) end. Duration was 117 ms.
17-03-18 04:04:26.784 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:04:26.784 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 04:04:26.794 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 121 ms.
17-03-18 04:04:26.804 -07 000000444 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:04:26.804 -07 000000512 INF: Autofocus start
17-03-18 04:04:26.804 -07 000000512 INF: MeasureProfile start
17-03-18 04:04:26.814 -07 000000561 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:04:26.814 -07 000000444 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 04:04:26.814 -07 000000444 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:04:26.824 -07 000000512 INF: MeasureProfile done
17-03-18 04:04:26.824 -07 000000512 INF: X=0  Z correction [um]=-0.02394831
17-03-18 04:04:26.824 -07 000000512 INF: Autofocus finished
17-03-18 04:04:27.014 -07 000000501 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:04:27.014 -07 000000444 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:04:27.014 -07 000000610 INF: ------------ Scan Snapping tile 5 at Y-position 63.2236328125, Z-position -0.138446054463043. ----------
17-03-18 04:04:27.024 -07 000000610 INF: Cycle	120	Tile	5	Exposure Settings		A	414	G	199	T	199	C	414
17-03-18 04:04:27.024 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28750, sync = True, waitForSettling = True)
17-03-18 04:04:27.024 -07 000000610 INF: Z Motor: Moving to -0.131609 mm, started at -0.138446 mm, distance = 6.84 um
17-03-18 04:04:27.024 -07 000000610 INF: FPGA: Xmit ZDACW 28750\n [Z Motor]
17-03-18 04:04:27.024 -07 000000618 INF: FPGA: Recv ZDACW
17-03-18 04:04:27.034 -07 000000610 INF: FPGA: 'ZDACW 28750' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 04:04:27.034 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:04:27.034 -07 000000590 INF: FPGA: Recv ZDACR 28750
17-03-18 04:04:27.044 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:27.044 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:04:27.194 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:27.194 -07 000000579 INF: FPGA: Recv ZSGSRD 29776
17-03-18 04:04:27.204 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:27.204 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:27.204 -07 000000487 INF: FPGA: Recv ZSGSRD 29780
17-03-18 04:04:27.214 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:27.214 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:27.214 -07 000000618 INF: FPGA: Recv ZSGSRD 29786
17-03-18 04:04:27.224 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:27.224 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:27.224 -07 000000590 INF: FPGA: Recv ZSGSRD 29771
17-03-18 04:04:27.234 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:27.234 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:27.234 -07 000000579 INF: FPGA: Recv ZSGSRD 29776
17-03-18 04:04:27.244 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:27.244 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:27.244 -07 000000444 INF: FPGA: Recv ZSGSRD 29773
17-03-18 04:04:27.254 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:27.254 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:27.254 -07 000000437 INF: FPGA: Recv ZSGSRD 29778
17-03-18 04:04:27.264 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:27.264 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:27.264 -07 000000501 INF: FPGA: Recv ZSGSRD 29784
17-03-18 04:04:27.274 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:27.274 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:27.274 -07 000000480 INF: FPGA: Recv ZSGSRD 29774
17-03-18 04:04:27.284 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:27.284 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:27.284 -07 000000487 INF: FPGA: Recv ZSGSRD 29773
17-03-18 04:04:27.294 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:27.294 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:04:27.294 -07 000000618 INF: FPGA: Recv ZPIEZORD 25248
17-03-18 04:04:27.304 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:27.304 -07 000000610 INF: Z Motor: Piezo is near 33.9 V (nominally 0 to 100 V), expect near 43.9 V, since DAC is at 4.387 V. Piezo Error = -9.9 V.
17-03-18 04:04:27.304 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.6 um, Read 10 ADC samples: Avg = 29777 (-130.8 uncal um), Error = 0.8 uncal um, Median = 29776 (-130.8 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 29771 (-130.8 uncal um), Max = 29786 (-130.9 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 04:04:27.304 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29777, posNoise = 9, negNoise = 6
17-03-18 04:04:27.304 -07 000000610 INF: Z Motor: After move to -0.131609, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:04:27.304 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 04:04:27.304 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:04:27.304 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:04:27.304 -07 000000625 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:04:27.304 -07 000000487 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:04:27.304 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:04:27.304 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:04:27.304 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:04:27.304 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:04:27.304 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:04:27.304 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:04:27.304 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:04:27.304 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:04:27.314 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 04:04:27.314 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:04:27.314 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 04:04:27.314 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:04:27.324 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 04:04:27.324 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 04:04:27.324 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 04:04:27.324 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 04:04:27.324 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 414 414 199 199 28927 150\n [Camera]
17-03-18 04:04:27.524 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:04:27.934 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 606
17-03-18 04:04:27.934 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 606
17-03-18 04:04:27.934 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:04:27.944 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 606
17-03-18 04:04:27.944 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 606
17-03-18 04:04:27.944 -07 000000444 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:04:27.944 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:04:27.944 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-18 04:04:27.944 -07 000000444 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:04:27.944 -07 000000444 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) start.
17-03-18 04:04:28.134 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28927 799
17-03-18 04:04:28.304 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP turning grn on 949
17-03-18 04:04:28.334 -07 000000444 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) end. Duration was 387 ms.
17-03-18 04:04:28.334 -07 000000444 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-18 04:04:28.334 -07 000000444 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:04:28.334 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 391 ms.
17-03-18 04:04:28.334 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-18 04:04:28.334 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:04:28.334 -07 000000444 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:04:28.344 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:04:28.344 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 04:04:28.344 -07 000000444 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-18 04:04:28.484 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1148
17-03-18 04:04:28.484 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1148
17-03-18 04:04:28.484 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:04:28.484 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1148
17-03-18 04:04:28.484 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1148
17-03-18 04:04:28.484 -07 000000625 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:04:28.484 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:04:28.484 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-18 04:04:28.494 -07 000000625 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:04:28.494 -07 000000625 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-18 04:04:28.674 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP 1340
17-03-18 04:04:28.674 -07 000000579 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:04:28.674 -07 000000610 INF: FPGA: 'CAMDBLSNAP 414 414 199 199 28927 150' command took 2 ms to send, 1342 ms to get response, and 1348 ms overall
17-03-18 04:04:28.674 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 04:04:28.674 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 6 at Y-position 63.2236328125, Z-Position -0.131617116956351. ------
17-03-18 04:04:28.674 -07 000000437 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:04:28.674 -07 000000590 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.0626 mm, moving Z to -0.13770 mm
17-03-18 04:04:28.674 -07 000000590 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:04:28.684 -07 000000579 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:04:28.684 -07 000000437 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 04:04:28.684 -07 000000437 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:04:28.684 -07 000000611 INF: Y Motor: Entering MoveAbsStepped (target = 102500 steps, sync = True, waitForSettling = True)
17-03-18 04:04:28.684 -07 000000611 INF: Y Motor: Moving to 64.0626 mm, started at 63.2236 mm, delta = 0.8390 mm
17-03-18 04:04:28.684 -07 000000608 INF: Z Motor: Entering MoveAbsStepped (DAC = 30080, sync = True, waitForSettling = False)
17-03-18 04:04:28.684 -07 000000608 INF: Z Motor: Moving to -0.137697 mm, started at -0.131617 mm, distance = -6.08 um
17-03-18 04:04:28.694 -07 000000611 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:04:28.694 -07 000000501 INF: FPGA: Recv YRDPOS 129482
17-03-18 04:04:28.704 -07 000000608 INF: FPGA: Xmit ZDACW 30080\n [Z Motor]
17-03-18 04:04:28.704 -07 000000611 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-18 04:04:28.704 -07 000000611 INF: Y Motor: Encoder = 129482 = motor step 101157.8 = 63.2236 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:04:28.704 -07 000000611 INF: Y Motor: Last commanded position = 63.2326 mm (101172.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:04:28.704 -07 000000611 INF: Y Motor: Moving 1342 steps-19
17-03-18 04:04:28.704 -07 000000579 INF: FPGA: Recv ZDACW
17-03-18 04:04:28.714 -07 000000608 INF: FPGA: 'ZDACW 30080' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-18 04:04:28.714 -07 000000611 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:04:28.724 -07 000000608 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:04:28.724 -07 000000512 INF: FPGA: Recv ZDACR 30080
17-03-18 04:04:28.734 -07 000000608 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 04:04:28.734 -07 000000608 INF: Z Motor: MoveAbsStepped took 48 ms (did NOT wait for settling yet))
17-03-18 04:04:28.874 -07 000000625 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 388 ms.
17-03-18 04:04:28.874 -07 000000625 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-18 04:04:28.874 -07 000000625 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:04:28.884 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 391 ms.
17-03-18 04:04:28.884 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-18 04:04:28.884 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:04:28.884 -07 000000625 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:04:28.884 -07 000000455 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:04:28.884 -07 000000437 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 194 ms to get response, and 202 ms overall
17-03-18 04:04:28.884 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:04:28.884 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 04:04:28.894 -07 000000625 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 405 ms.
17-03-18 04:04:29.084 -07 000000579 INF: FPGA: Recv YMVTILE
17-03-18 04:04:29.084 -07 000000611 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 369 ms to get response, and 388 ms overall
17-03-18 04:04:29.134 -07 000000611 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:04:29.144 -07 000000487 INF: FPGA: Recv YRDPOS 131188
17-03-18 04:04:29.144 -07 000000611 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 04:04:29.144 -07 000000611 INF: Y Motor: Encoder = 131188 = motor step 102490.6 = 64.0566 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:04:29.144 -07 000000611 INF: Y Motor: Position error before settling (table move) = -12 encoder counts (-0.006 mm)
17-03-18 04:04:29.144 -07 000000611 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.839 mm, average velocity = 2.162 mm/sec
17-03-18 04:04:29.994 -07 000000437 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 120, FrontChillerTemperature: 3.974486,
17-03-18 04:04:30.094 -07 000000611 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:04:30.094 -07 000000608 INF: FPGA: Recv YRDPOS 131188
17-03-18 04:04:30.104 -07 000000611 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:30.104 -07 000000611 INF: Y Motor: Encoder = 131188 = motor step 102490.6 = 64.0566 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:04:30.124 -07 000000611 INF: Y Motor: After move to 64.062607, error = -0.005966, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:04:30.124 -07 000000611 INF: Y Motor: Position error after settling (table move) = -12 encoder counts (-0.006 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:04:30.124 -07 000000611 INF: Y Motor: Moved to 64.0566 after 1444 ms (table move)
17-03-18 04:04:30.134 -07 000000590 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137697 mm (DAC = 30080)
17-03-18 04:04:30.134 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:30.134 -07 000000012 INF: FPGA: Recv ZSGSRD 30728
17-03-18 04:04:30.144 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:04:30.144 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:30.144 -07 000000455 INF: FPGA: Recv ZSGSRD 30727
17-03-18 04:04:30.154 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:30.154 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:30.154 -07 000000480 INF: FPGA: Recv ZSGSRD 30725
17-03-18 04:04:30.164 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:30.164 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:30.164 -07 000000447 INF: FPGA: Recv ZSGSRD 30729
17-03-18 04:04:30.174 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 04:04:30.174 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:30.174 -07 000000561 INF: FPGA: Recv ZSGSRD 30727
17-03-18 04:04:30.184 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:30.184 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:30.184 -07 000000437 INF: FPGA: Recv ZSGSRD 30721
17-03-18 04:04:30.194 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:30.194 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:30.194 -07 000000618 INF: FPGA: Recv ZSGSRD 30721
17-03-18 04:04:30.204 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:30.204 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:30.204 -07 000000447 INF: FPGA: Recv ZSGSRD 30722
17-03-18 04:04:30.214 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:30.214 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:30.214 -07 000000487 INF: FPGA: Recv ZSGSRD 30725
17-03-18 04:04:30.224 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:30.224 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:30.224 -07 000000625 INF: FPGA: Recv ZSGSRD 30729
17-03-18 04:04:30.234 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:30.234 -07 000000590 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:04:30.234 -07 000000618 INF: FPGA: Recv ZPIEZORD 26505
17-03-18 04:04:30.244 -07 000000590 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:30.244 -07 000000590 INF: Z Motor: Piezo is near 36.6 V (nominally 0 to 100 V), expect near 45.9 V, since DAC is at 4.590 V. Piezo Error = -9.3 V.
17-03-18 04:04:30.244 -07 000000590 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.7 um, Read 10 ADC samples: Avg = 30725 (-136.9 uncal um), Error = 0.8 uncal um, Median = 30726 (-136.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 30721 (-136.9 uncal um), Max = 30729 (-136.9 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 04:04:30.244 -07 000000590 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30725, posNoise = 4, negNoise = 4
17-03-18 04:04:30.244 -07 000000590 INF: Z Motor: After move to -0.137697, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:04:30.244 -07 000000590 INF: Z Motor: Settle wait time = 1447 ms, measure time = 111 ms (allowed 150 ms), total time = 1558 ms
17-03-18 04:04:30.244 -07 000000590 INF: Z Motor: Waiting extra 39 ms after reading position to reach expected total of 150 ms
17-03-18 04:04:30.284 -07 000000590 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1603 ms
17-03-18 04:04:30.284 -07 000000590 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:04:30.284 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:04:30.284 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:04:30.284 -07 000000625 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:04:30.284 -07 000000561 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:04:30.284 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:04:30.284 -07 000000608 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:04:30.284 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:04:30.284 -07 000000561 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:04:30.294 -07 000000561 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 04:04:30.294 -07 000000561 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:04:30.294 -07 000000561 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 04:04:30.294 -07 000000561 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-18 04:04:30.304 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:04:30.344 -07 000000611 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:04:30.644 -07 000000501 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:04:30.644 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:04:30.644 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:04:30.644 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2334002848, 0x0, 559484976) start.
17-03-18 04:04:30.684 -07 000000447 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:04:30.684 -07 000000480 INF: FPGA: Recv CAMSNAP
17-03-18 04:04:30.684 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 04:04:30.764 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2334002848, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 04:04:30.764 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:04:30.764 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 04:04:30.764 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 04:04:30.784 -07 000000579 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:04:30.784 -07 000000561 INF: Autofocus start
17-03-18 04:04:30.784 -07 000000561 INF: MeasureProfile start
17-03-18 04:04:30.794 -07 000000625 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:04:30.794 -07 000000579 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 04:04:30.794 -07 000000579 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:04:30.794 -07 000000561 INF: MeasureProfile done
17-03-18 04:04:30.794 -07 000000561 INF: X=0  Z correction [um]=-0.02394831
17-03-18 04:04:30.794 -07 000000561 INF: Autofocus finished
17-03-18 04:04:30.994 -07 000000444 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:04:30.994 -07 000000579 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:04:30.994 -07 000000610 INF: ------------ Scan Snapping tile 6 at Y-position 64.056640625, Z-position -0.13770727006674. ----------
17-03-18 04:04:30.994 -07 000000610 INF: Cycle	120	Tile	6	Exposure Settings		A	414	G	199	T	199	C	414
17-03-18 04:04:31.004 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28588, sync = True, waitForSettling = True)
17-03-18 04:04:31.004 -07 000000610 INF: Z Motor: Moving to -0.130867 mm, started at -0.137707 mm, distance = 6.84 um
17-03-18 04:04:31.004 -07 000000610 INF: FPGA: Xmit ZDACW 28588\n [Z Motor]
17-03-18 04:04:31.004 -07 000000512 INF: FPGA: Recv ZDACW
17-03-18 04:04:31.014 -07 000000610 INF: FPGA: 'ZDACW 28588' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 04:04:31.014 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:04:31.014 -07 000000608 INF: FPGA: Recv ZDACR 28588
17-03-18 04:04:31.024 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:31.024 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:04:31.174 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:31.174 -07 000000590 INF: FPGA: Recv ZSGSRD 29661
17-03-18 04:04:31.184 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:31.184 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:31.184 -07 000000625 INF: FPGA: Recv ZSGSRD 29670
17-03-18 04:04:31.194 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:31.194 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:31.194 -07 000000608 INF: FPGA: Recv ZSGSRD 29661
17-03-18 04:04:31.204 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:31.204 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:31.204 -07 000000012 INF: FPGA: Recv ZSGSRD 29658
17-03-18 04:04:31.214 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:31.214 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:31.214 -07 000000618 INF: FPGA: Recv ZSGSRD 29658
17-03-18 04:04:31.224 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:31.224 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:31.224 -07 000000512 INF: FPGA: Recv ZSGSRD 29656
17-03-18 04:04:31.234 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:31.234 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:31.234 -07 000000501 INF: FPGA: Recv ZSGSRD 29660
17-03-18 04:04:31.244 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:31.244 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:31.244 -07 000000444 INF: FPGA: Recv ZSGSRD 29663
17-03-18 04:04:31.254 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:31.254 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:31.254 -07 000000611 INF: FPGA: Recv ZSGSRD 29660
17-03-18 04:04:31.264 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:31.264 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:31.264 -07 000000625 INF: FPGA: Recv ZSGSRD 29662
17-03-18 04:04:31.274 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:31.274 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:04:31.274 -07 000000437 INF: FPGA: Recv ZPIEZORD 25123
17-03-18 04:04:31.284 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:31.284 -07 000000610 INF: Z Motor: Piezo is near 33.7 V (nominally 0 to 100 V), expect near 43.6 V, since DAC is at 4.362 V. Piezo Error = -10.0 V.
17-03-18 04:04:31.284 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.9 um, Read 10 ADC samples: Avg = 29661 (-130.1 uncal um), Error = 0.8 uncal um, Median = 29660 (-130.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 29656 (-130.1 uncal um), Max = 29670 (-130.1 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 04:04:31.284 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29661, posNoise = 9, negNoise = 5
17-03-18 04:04:31.284 -07 000000610 INF: Z Motor: After move to -0.130867, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:04:31.284 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 04:04:31.284 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:04:31.284 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:04:31.284 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:04:31.284 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:04:31.284 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:04:31.284 -07 000000590 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:04:31.284 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:04:31.284 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:04:31.284 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 04:04:31.284 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:04:31.284 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 04:04:31.284 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:04:31.294 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 04:04:31.294 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:04:31.294 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 04:04:31.294 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:04:31.304 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 04:04:31.304 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 04:04:31.304 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-18 04:04:31.304 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 18 ms.
17-03-18 04:04:31.304 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 414 414 199 199 28764 150\n [Camera]
17-03-18 04:04:31.504 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:04:31.634 -07 000000444 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:04:31.634 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 119. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1710, R2=1777, Total=3487. Warn if over 250 bubbles per interval.
17-03-18 04:04:31.924 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 606
17-03-18 04:04:31.924 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 606
17-03-18 04:04:31.924 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 606
17-03-18 04:04:31.924 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 606
17-03-18 04:04:31.924 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:04:31.924 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:04:31.934 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:04:31.934 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 2486767776, 0x0, 418435064) start.
17-03-18 04:04:31.944 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:04:31.944 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) start.
17-03-18 04:04:32.114 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28764 799
17-03-18 04:04:32.264 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning grn on 949
17-03-18 04:04:32.314 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 2486767776, 0x0, 418435064) end. Duration was 374 ms.
17-03-18 04:04:32.314 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-18 04:04:32.314 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:04:32.314 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:04:32.324 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) end. Duration was 378 ms.
17-03-18 04:04:32.324 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-18 04:04:32.324 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:04:32.324 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:04:32.324 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 04:04:32.324 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-18 04:04:32.464 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1148
17-03-18 04:04:32.464 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1148
17-03-18 04:04:32.464 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:04:32.464 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1148
17-03-18 04:04:32.464 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1148
17-03-18 04:04:32.464 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:04:32.464 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:04:32.464 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 04:04:32.464 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:04:32.464 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 2602438304, 0x0, 391868352) start.
17-03-18 04:04:32.654 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP 1341
17-03-18 04:04:32.654 -07 000000501 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:04:32.654 -07 000000610 INF: FPGA: 'CAMDBLSNAP 414 414 199 199 28764 150' command took 2 ms to send, 1343 ms to get response, and 1348 ms overall
17-03-18 04:04:32.654 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 04:04:32.654 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 7 at Y-position 64.056640625, Z-Position -0.130871908347907. ------
17-03-18 04:04:32.654 -07 000000625 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:04:32.654 -07 000000579 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.8926 mm, moving Z to -0.13743 mm
17-03-18 04:04:32.654 -07 000000579 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:04:32.664 -07 000000611 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:04:32.664 -07 000000625 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 4 ms to get response, and 5 ms overall
17-03-18 04:04:32.664 -07 000000625 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:04:32.664 -07 000000447 INF: Y Motor: Entering MoveAbsStepped (target = 103828 steps, sync = True, waitForSettling = True)
17-03-18 04:04:32.664 -07 000000447 INF: Y Motor: Moving to 64.8926 mm, started at 64.0566 mm, delta = 0.8360 mm
17-03-18 04:04:32.664 -07 000000487 INF: Z Motor: Entering MoveAbsStepped (DAC = 30021, sync = True, waitForSettling = False)
17-03-18 04:04:32.664 -07 000000487 INF: Z Motor: Moving to -0.137427 mm, started at -0.130872 mm, distance = -6.56 um
17-03-18 04:04:32.674 -07 000000487 INF: FPGA: Xmit ZDACW 30021\n [Z Motor]
17-03-18 04:04:32.674 -07 000000561 INF: FPGA: Recv ZDACW
17-03-18 04:04:32.684 -07 000000487 INF: FPGA: 'ZDACW 30021' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-18 04:04:32.684 -07 000000447 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:04:32.684 -07 000000437 INF: FPGA: Recv YRDPOS 131188
17-03-18 04:04:32.694 -07 000000447 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-18 04:04:32.694 -07 000000487 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:04:32.694 -07 000000447 INF: Y Motor: Encoder = 131188 = motor step 102490.6 = 64.0566 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:04:32.694 -07 000000447 INF: Y Motor: Last commanded position = 64.0626 mm (102500.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:04:32.694 -07 000000447 INF: Y Motor: Moving 1338 steps-12
17-03-18 04:04:32.694 -07 000000437 INF: FPGA: Recv ZDACR 30021
17-03-18 04:04:32.704 -07 000000487 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 04:04:32.704 -07 000000487 INF: Z Motor: MoveAbsStepped took 34 ms (did NOT wait for settling yet))
17-03-18 04:04:32.704 -07 000000447 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:04:32.854 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 392 ms.
17-03-18 04:04:32.854 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-18 04:04:32.854 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:04:32.864 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:04:32.864 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 2602438304, 0x0, 391868352) end. Duration was 396 ms.
17-03-18 04:04:32.864 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 04:04:32.864 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:04:32.864 -07 000000480 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:04:32.864 -07 000000625 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 197 ms to get response, and 202 ms overall
17-03-18 04:04:32.864 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-18 04:04:32.864 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:04:32.864 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-18 04:04:33.074 -07 000000501 INF: FPGA: Recv YMVTILE
17-03-18 04:04:33.074 -07 000000447 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 388 ms overall
17-03-18 04:04:33.124 -07 000000447 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:04:33.124 -07 000000618 INF: FPGA: Recv YRDPOS 132871
17-03-18 04:04:33.134 -07 000000447 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 04:04:33.134 -07 000000447 INF: Y Motor: Encoder = 132871 = motor step 103805.5 = 64.8784 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:04:33.134 -07 000000447 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-18 04:04:33.134 -07 000000447 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.836 mm, average velocity = 2.155 mm/sec
17-03-18 04:04:34.084 -07 000000447 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:04:34.084 -07 000000487 INF: FPGA: Recv YRDPOS 132871
17-03-18 04:04:34.094 -07 000000447 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:34.094 -07 000000447 INF: Y Motor: Encoder = 132871 = motor step 103805.5 = 64.8784 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:04:34.124 -07 000000447 INF: Y Motor: After move to 64.892609, error = -0.014191, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:04:34.124 -07 000000447 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:04:34.124 -07 000000447 INF: Y Motor: Moved to 64.8784 after 1455 ms (table move)
17-03-18 04:04:34.124 -07 000000579 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137427 mm (DAC = 30021)
17-03-18 04:04:34.124 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:34.124 -07 000000625 INF: FPGA: Recv ZSGSRD 30691
17-03-18 04:04:34.134 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 04:04:34.134 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:34.134 -07 000000561 INF: FPGA: Recv ZSGSRD 30685
17-03-18 04:04:34.144 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:34.144 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:34.144 -07 000000437 INF: FPGA: Recv ZSGSRD 30687
17-03-18 04:04:34.154 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:34.154 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:34.154 -07 000000444 INF: FPGA: Recv ZSGSRD 30680
17-03-18 04:04:34.164 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:34.164 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:34.164 -07 000000611 INF: FPGA: Recv ZSGSRD 30682
17-03-18 04:04:34.174 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:34.174 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:34.174 -07 000000480 INF: FPGA: Recv ZSGSRD 30685
17-03-18 04:04:34.184 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:34.184 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:34.184 -07 000000447 INF: FPGA: Recv ZSGSRD 30676
17-03-18 04:04:34.194 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:34.194 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:34.194 -07 000000487 INF: FPGA: Recv ZSGSRD 30676
17-03-18 04:04:34.204 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:34.204 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:34.204 -07 000000611 INF: FPGA: Recv ZSGSRD 30685
17-03-18 04:04:34.214 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:34.214 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:34.214 -07 000000590 INF: FPGA: Recv ZSGSRD 30684
17-03-18 04:04:34.224 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:34.224 -07 000000579 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:04:34.224 -07 000000512 INF: FPGA: Recv ZPIEZORD 26454
17-03-18 04:04:34.234 -07 000000579 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:34.234 -07 000000579 INF: Z Motor: Piezo is near 36.5 V (nominally 0 to 100 V), expect near 45.8 V, since DAC is at 4.581 V. Piezo Error = -9.3 V.
17-03-18 04:04:34.234 -07 000000579 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.4 um, Read 10 ADC samples: Avg = 30683 (-136.6 uncal um), Error = 0.8 uncal um, Median = 30684 (-136.6 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 30676 (-136.6 uncal um), Max = 30691 (-136.7 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 04:04:34.234 -07 000000579 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30683, posNoise = 8, negNoise = 7
17-03-18 04:04:34.234 -07 000000579 INF: Z Motor: After move to -0.137427, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:04:34.234 -07 000000579 INF: Z Motor: Settle wait time = 1458 ms, measure time = 107 ms (allowed 150 ms), total time = 1565 ms
17-03-18 04:04:34.234 -07 000000579 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-18 04:04:34.284 -07 000000579 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1621 ms
17-03-18 04:04:34.284 -07 000000579 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:04:34.294 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:04:34.294 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:04:34.304 -07 000000625 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:04:34.304 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:04:34.304 -07 000000611 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:04:34.304 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:04:34.304 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 04:04:34.304 -07 000000611 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:04:34.304 -07 000000611 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 04:04:34.304 -07 000000611 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:04:34.314 -07 000000611 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 8 ms.
17-03-18 04:04:34.314 -07 000000611 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 13 ms.
17-03-18 04:04:34.324 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:04:34.374 -07 000000444 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:04:34.674 -07 000000447 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:04:34.674 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:04:34.674 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:04:34.674 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 619151688, 0x0, 559484976) start.
17-03-18 04:04:34.714 -07 000000608 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:04:34.714 -07 000000012 INF: FPGA: Recv CAMSNAP
17-03-18 04:04:34.714 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 9 ms to send, 375 ms to get response, and 393 ms overall
17-03-18 04:04:34.794 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 619151688, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 04:04:34.794 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:04:34.794 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 04:04:34.794 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-18 04:04:34.814 -07 000000447 INF: Autofocus start
17-03-18 04:04:34.814 -07 000000447 INF: MeasureProfile start
17-03-18 04:04:34.814 -07 000000561 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:04:34.814 -07 000000625 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:04:34.824 -07 000000561 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 04:04:34.824 -07 000000561 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:04:34.834 -07 000000447 INF: MeasureProfile done
17-03-18 04:04:34.834 -07 000000447 INF: X=0  Z correction [um]=-0.02394831
17-03-18 04:04:34.834 -07 000000447 INF: Autofocus finished
17-03-18 04:04:35.024 -07 000000512 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:04:35.024 -07 000000561 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:04:35.024 -07 000000610 INF: ------------ Scan Snapping tile 7 at Y-position 64.87841796875, Z-position -0.137437453156786. ----------
17-03-18 04:04:35.024 -07 000000610 INF: Cycle	120	Tile	7	Exposure Settings		A	414	G	199	T	199	C	414
17-03-18 04:04:35.034 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28529, sync = True, waitForSettling = True)
17-03-18 04:04:35.034 -07 000000610 INF: Z Motor: Moving to -0.130597 mm, started at -0.137437 mm, distance = 6.84 um
17-03-18 04:04:35.044 -07 000000610 INF: FPGA: Xmit ZDACW 28529\n [Z Motor]
17-03-18 04:04:35.044 -07 000000447 INF: FPGA: Recv ZDACW
17-03-18 04:04:35.054 -07 000000610 INF: FPGA: 'ZDACW 28529' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-18 04:04:35.054 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:04:35.054 -07 000000625 INF: FPGA: Recv ZDACR 28529
17-03-18 04:04:35.064 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:35.064 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:04:35.214 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:35.214 -07 000000512 INF: FPGA: Recv ZSGSRD 29623
17-03-18 04:04:35.224 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:04:35.224 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:35.224 -07 000000501 INF: FPGA: Recv ZSGSRD 29623
17-03-18 04:04:35.234 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:35.234 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:35.234 -07 000000487 INF: FPGA: Recv ZSGSRD 29615
17-03-18 04:04:35.244 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:35.244 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:35.244 -07 000000611 INF: FPGA: Recv ZSGSRD 29622
17-03-18 04:04:35.254 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:35.254 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:35.254 -07 000000437 INF: FPGA: Recv ZSGSRD 29620
17-03-18 04:04:35.264 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:35.264 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:35.264 -07 000000618 INF: FPGA: Recv ZSGSRD 29621
17-03-18 04:04:35.274 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:35.274 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:35.274 -07 000000618 INF: FPGA: Recv ZSGSRD 29622
17-03-18 04:04:35.284 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:35.284 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:35.284 -07 000000501 INF: FPGA: Recv ZSGSRD 29616
17-03-18 04:04:35.294 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:35.294 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:35.294 -07 000000480 INF: FPGA: Recv ZSGSRD 29620
17-03-18 04:04:35.304 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:35.304 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:35.304 -07 000000012 INF: FPGA: Recv ZSGSRD 29624
17-03-18 04:04:35.314 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:35.314 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:04:35.314 -07 000000618 INF: FPGA: Recv ZPIEZORD 25070
17-03-18 04:04:35.324 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:35.324 -07 000000610 INF: Z Motor: Piezo is near 33.6 V (nominally 0 to 100 V), expect near 43.5 V, since DAC is at 4.353 V. Piezo Error = -10.0 V.
17-03-18 04:04:35.324 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.6 um, Read 10 ADC samples: Avg = 29621 (-129.8 uncal um), Error = 0.8 uncal um, Median = 29622 (-129.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29615 (-129.8 uncal um), Max = 29624 (-129.9 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 04:04:35.324 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29621, posNoise = 3, negNoise = 6
17-03-18 04:04:35.324 -07 000000610 INF: Z Motor: After move to -0.130597, error = -0.000018, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:04:35.324 -07 000000610 INF: Z Motor: MoveAbsStepped took 289 ms)
17-03-18 04:04:35.324 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:04:35.324 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:04:35.324 -07 000000579 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:04:35.324 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:04:35.324 -07 000000012 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:04:35.324 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:04:35.324 -07 000000611 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:04:35.324 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:04:35.324 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:04:35.324 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:04:35.324 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:04:35.324 -07 000000611 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:04:35.334 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 04:04:35.334 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:04:35.334 -07 000000611 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 04:04:35.334 -07 000000611 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:04:35.344 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 12 ms.
17-03-18 04:04:35.344 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 18 ms.
17-03-18 04:04:35.344 -07 000000611 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 12 ms.
17-03-18 04:04:35.344 -07 000000611 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 18 ms.
17-03-18 04:04:35.354 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 414 414 199 199 28705 150\n [Camera]
17-03-18 04:04:35.354 -07 000000608 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 120, FrontChillerTemperature: 3.994908,
17-03-18 04:04:35.544 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:04:35.964 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 606
17-03-18 04:04:35.964 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 606
17-03-18 04:04:35.964 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:04:35.964 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:04:35.964 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 04:04:35.964 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 606
17-03-18 04:04:35.964 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 606
17-03-18 04:04:35.964 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:04:35.964 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:04:35.964 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start.
17-03-18 04:04:36.154 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28705 799
17-03-18 04:04:36.304 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP turning grn on 949
17-03-18 04:04:36.364 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 396 ms.
17-03-18 04:04:36.364 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 04:04:36.364 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:04:36.364 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:04:36.364 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 04:04:36.364 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 399 ms.
17-03-18 04:04:36.364 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 04:04:36.364 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:04:36.374 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:04:36.374 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-18 04:04:36.504 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1148
17-03-18 04:04:36.504 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1148
17-03-18 04:04:36.504 -07 000000611 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:04:36.504 -07 000000611 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:04:36.504 -07 000000611 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) start.
17-03-18 04:04:36.514 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1148
17-03-18 04:04:36.514 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1148
17-03-18 04:04:36.514 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:04:36.514 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:04:36.514 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 04:04:36.634 -07 000000012 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:04:36.634 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 119. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1710, R2=1777, Total=3487. Warn if over 250 bubbles per interval.
17-03-18 04:04:36.694 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP 1340
17-03-18 04:04:36.694 -07 000000487 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:04:36.694 -07 000000610 INF: FPGA: 'CAMDBLSNAP 414 414 199 199 28705 150' command took 2 ms to send, 1338 ms to get response, and 1350 ms overall
17-03-18 04:04:36.704 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 04:04:36.704 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 8 at Y-position 64.87841796875, Z-Position -0.130614939862236. ------
17-03-18 04:04:36.704 -07 000000590 INF: Y Motor: MoveYZ optimized starting. Moving Y to 65.7226 mm, moving Z to -0.13726 mm
17-03-18 04:04:36.704 -07 000000590 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:04:36.704 -07 000000625 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:04:36.704 -07 000000579 INF: Y Motor: Entering MoveAbsStepped (target = 105156 steps, sync = True, waitForSettling = True)
17-03-18 04:04:36.704 -07 000000579 INF: Y Motor: Moving to 65.7226 mm, started at 64.8784 mm, delta = 0.8442 mm
17-03-18 04:04:36.704 -07 000000487 INF: Z Motor: Entering MoveAbsStepped (DAC = 29985, sync = True, waitForSettling = False)
17-03-18 04:04:36.704 -07 000000487 INF: Z Motor: Moving to -0.137263 mm, started at -0.130615 mm, distance = -6.65 um
17-03-18 04:04:36.714 -07 000000487 INF: FPGA: Xmit ZDACW 29985\n [Z Motor]
17-03-18 04:04:36.714 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:04:36.714 -07 000000625 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 5 ms overall
17-03-18 04:04:36.714 -07 000000608 INF: FPGA: Recv ZDACW
17-03-18 04:04:36.724 -07 000000579 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:04:36.724 -07 000000487 INF: FPGA: 'ZDACW 29985' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:04:36.724 -07 000000437 INF: FPGA: Recv YRDPOS 132871
17-03-18 04:04:36.734 -07 000000625 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:04:36.734 -07 000000579 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 21 ms overall
17-03-18 04:04:36.734 -07 000000579 INF: Y Motor: Encoder = 132871 = motor step 103805.5 = 64.8784 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:04:36.734 -07 000000579 INF: Y Motor: Last commanded position = 64.8926 mm (103828.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:04:36.734 -07 000000579 INF: Y Motor: Moving 1351 steps-29
17-03-18 04:04:36.744 -07 000000487 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:04:36.744 -07 000000012 INF: FPGA: Recv ZDACR 29985
17-03-18 04:04:36.754 -07 000000487 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 04:04:36.754 -07 000000487 INF: Z Motor: MoveAbsStepped took 41 ms (did NOT wait for settling yet))
17-03-18 04:04:36.754 -07 000000579 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:04:36.914 -07 000000611 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) end. Duration was 405 ms.
17-03-18 04:04:36.914 -07 000000611 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-18 04:04:36.914 -07 000000611 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:04:36.914 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 403 ms.
17-03-18 04:04:36.914 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-18 04:04:36.914 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:04:36.914 -07 000000611 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:04:36.914 -07 000000611 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 412 ms.
17-03-18 04:04:36.924 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:04:36.924 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-18 04:04:36.934 -07 000000487 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:04:36.934 -07 000000625 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 221 ms overall
17-03-18 04:04:37.124 -07 000000455 INF: FPGA: Recv YMVTILE
17-03-18 04:04:37.124 -07 000000579 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 04:04:37.174 -07 000000579 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:04:37.174 -07 000000487 INF: FPGA: Recv YRDPOS 134581
17-03-18 04:04:37.184 -07 000000579 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 04:04:37.184 -07 000000579 INF: Y Motor: Encoder = 134581 = motor step 105141.4 = 65.7134 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:04:37.184 -07 000000579 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm)
17-03-18 04:04:37.184 -07 000000579 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.844 mm, average velocity = 2.121 mm/sec
17-03-18 04:04:38.134 -07 000000579 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:04:38.134 -07 000000437 INF: FPGA: Recv YRDPOS 134581
17-03-18 04:04:38.144 -07 000000579 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:04:38.144 -07 000000579 INF: Y Motor: Encoder = 134581 = motor step 105141.4 = 65.7134 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:04:38.174 -07 000000579 INF: Y Motor: After move to 65.722610, error = -0.009232, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:04:38.174 -07 000000579 INF: Y Motor: Position error after settling (table move) = -19 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:04:38.174 -07 000000579 INF: Y Motor: Moved to 65.7134 after 1468 ms (table move)
17-03-18 04:04:38.184 -07 000000590 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137263 mm (DAC = 29985)
17-03-18 04:04:38.184 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:38.184 -07 000000512 INF: FPGA: Recv ZSGSRD 30660
17-03-18 04:04:38.194 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:38.194 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:38.194 -07 000000444 INF: FPGA: Recv ZSGSRD 30658
17-03-18 04:04:38.204 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:38.204 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:38.204 -07 000000447 INF: FPGA: Recv ZSGSRD 30661
17-03-18 04:04:38.214 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:38.214 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:38.214 -07 000000501 INF: FPGA: Recv ZSGSRD 30655
17-03-18 04:04:38.224 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:38.224 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:38.224 -07 000000512 INF: FPGA: Recv ZSGSRD 30657
17-03-18 04:04:38.234 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:38.234 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:38.234 -07 000000437 INF: FPGA: Recv ZSGSRD 30657
17-03-18 04:04:38.244 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:38.244 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:38.244 -07 000000447 INF: FPGA: Recv ZSGSRD 30654
17-03-18 04:04:38.254 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:38.254 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:38.254 -07 000000501 INF: FPGA: Recv ZSGSRD 30662
17-03-18 04:04:38.264 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:38.264 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:38.264 -07 000000579 INF: FPGA: Recv ZSGSRD 30659
17-03-18 04:04:38.274 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:38.274 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:38.274 -07 000000437 INF: FPGA: Recv ZSGSRD 30661
17-03-18 04:04:38.284 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:38.284 -07 000000590 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:04:38.284 -07 000000625 INF: FPGA: Recv ZPIEZORD 26439
17-03-18 04:04:38.294 -07 000000590 INF: FPGA: 'ZPIEZORD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:38.294 -07 000000590 INF: Z Motor: Piezo is near 36.5 V (nominally 0 to 100 V), expect near 45.8 V, since DAC is at 4.575 V. Piezo Error = -9.3 V.
17-03-18 04:04:38.294 -07 000000590 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.3 um, Read 10 ADC samples: Avg = 30658 (-136.5 uncal um), Error = 0.8 uncal um, Median = 30658 (-136.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 30654 (-136.5 uncal um), Max = 30662 (-136.5 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 04:04:38.294 -07 000000590 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30658, posNoise = 4, negNoise = 4
17-03-18 04:04:38.294 -07 000000590 INF: Z Motor: After move to -0.137263, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:04:38.294 -07 000000590 INF: Z Motor: Settle wait time = 1471 ms, measure time = 110 ms (allowed 150 ms), total time = 1581 ms
17-03-18 04:04:38.294 -07 000000590 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-18 04:04:38.334 -07 000000590 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1624 ms
17-03-18 04:04:38.334 -07 000000590 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:04:38.334 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:04:38.334 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:04:38.334 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:04:38.334 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:04:38.334 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:04:38.334 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:04:38.334 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:04:38.334 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:04:38.344 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 04:04:38.344 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:04:38.344 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 9 ms.
17-03-18 04:04:38.344 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 13 ms.
17-03-18 04:04:38.354 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:04:38.394 -07 000000590 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:04:38.694 -07 000000625 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:04:38.694 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:04:38.694 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:04:38.704 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 675221432, 0x0, 559484976) start.
17-03-18 04:04:38.734 -07 000000447 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:04:38.734 -07 000000618 INF: FPGA: Recv CAMSNAP
17-03-18 04:04:38.734 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 378 ms to get response, and 384 ms overall
17-03-18 04:04:38.814 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 675221432, 0x0, 559484976) end. Duration was 117 ms.
17-03-18 04:04:38.814 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:04:38.814 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 04:04:38.814 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 04:04:38.834 -07 000000579 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:04:38.834 -07 000000625 INF: Autofocus start
17-03-18 04:04:38.834 -07 000000625 INF: MeasureProfile start
17-03-18 04:04:38.834 -07 000000444 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:04:38.844 -07 000000579 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:04:38.844 -07 000000579 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:04:38.854 -07 000000625 INF: MeasureProfile done
17-03-18 04:04:38.854 -07 000000625 INF: X=0  Z correction [um]=-0.02394831
17-03-18 04:04:38.854 -07 000000625 INF: Autofocus finished
17-03-18 04:04:39.044 -07 000000480 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:04:39.044 -07 000000579 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:04:39.044 -07 000000610 INF: ------------ Scan Snapping tile 8 at Y-position 65.71337890625, Z-position -0.137276847853242. ----------
17-03-18 04:04:39.044 -07 000000610 INF: Cycle	120	Tile	8	Exposure Settings		A	414	G	199	T	199	C	414
17-03-18 04:04:39.054 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28492, sync = True, waitForSettling = True)
17-03-18 04:04:39.054 -07 000000610 INF: Z Motor: Moving to -0.130428 mm, started at -0.137277 mm, distance = 6.85 um
17-03-18 04:04:39.054 -07 000000610 INF: FPGA: Xmit ZDACW 28492\n [Z Motor]
17-03-18 04:04:39.054 -07 000000590 INF: FPGA: Recv ZDACW
17-03-18 04:04:39.064 -07 000000610 INF: FPGA: 'ZDACW 28492' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:39.064 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:04:39.064 -07 000000012 INF: FPGA: Recv ZDACR 28492
17-03-18 04:04:39.074 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:39.074 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:04:39.224 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:39.224 -07 000000512 INF: FPGA: Recv ZSGSRD 29593
17-03-18 04:04:39.234 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:04:39.234 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:39.234 -07 000000501 INF: FPGA: Recv ZSGSRD 29588
17-03-18 04:04:39.244 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:39.244 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:39.244 -07 000000444 INF: FPGA: Recv ZSGSRD 29590
17-03-18 04:04:39.254 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:39.254 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:39.254 -07 000000455 INF: FPGA: Recv ZSGSRD 29591
17-03-18 04:04:39.264 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:39.264 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:39.264 -07 000000012 INF: FPGA: Recv ZSGSRD 29600
17-03-18 04:04:39.274 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:39.274 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:39.274 -07 000000447 INF: FPGA: Recv ZSGSRD 29594
17-03-18 04:04:39.284 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:39.284 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:39.284 -07 000000608 INF: FPGA: Recv ZSGSRD 29590
17-03-18 04:04:39.294 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:39.294 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:39.294 -07 000000611 INF: FPGA: Recv ZSGSRD 29594
17-03-18 04:04:39.304 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:39.304 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:39.304 -07 000000512 INF: FPGA: Recv ZSGSRD 29594
17-03-18 04:04:39.314 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:39.314 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:39.314 -07 000000501 INF: FPGA: Recv ZSGSRD 29592
17-03-18 04:04:39.324 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:39.324 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:04:39.324 -07 000000608 INF: FPGA: Recv ZPIEZORD 25045
17-03-18 04:04:39.334 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:39.334 -07 000000610 INF: Z Motor: Piezo is near 33.5 V (nominally 0 to 100 V), expect near 43.5 V, since DAC is at 4.348 V. Piezo Error = -10.0 V.
17-03-18 04:04:39.334 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.4 um, Read 10 ADC samples: Avg = 29593 (-129.7 uncal um), Error = 0.8 uncal um, Median = 29592 (-129.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29588 (-129.6 uncal um), Max = 29600 (-129.7 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 04:04:39.334 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29593, posNoise = 7, negNoise = 5
17-03-18 04:04:39.334 -07 000000610 INF: Z Motor: After move to -0.130428, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:04:39.334 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-18 04:04:39.334 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:04:39.334 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:04:39.334 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:04:39.334 -07 000000487 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:04:39.334 -07 000000012 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:04:39.334 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:04:39.334 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:04:39.334 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:04:39.334 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:04:39.334 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:04:39.334 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:04:39.334 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:04:39.344 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-18 04:04:39.344 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:04:39.344 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 5 ms.
17-03-18 04:04:39.344 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:04:39.354 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 04:04:39.354 -07 000000012 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 04:04:39.354 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 04:04:39.354 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 17 ms.
17-03-18 04:04:39.354 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 414 414 199 199 28669 150\n [Camera]
17-03-18 04:04:39.554 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:04:39.964 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 606
17-03-18 04:04:39.964 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 606
17-03-18 04:04:39.964 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:04:39.974 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:04:39.974 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-18 04:04:39.974 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 606
17-03-18 04:04:39.974 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 606
17-03-18 04:04:39.974 -07 000000444 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:04:39.974 -07 000000444 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:04:39.974 -07 000000444 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-18 04:04:40.164 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28669 799
17-03-18 04:04:40.314 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning grn on 951
17-03-18 04:04:40.344 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 377 ms.
17-03-18 04:04:40.344 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-18 04:04:40.344 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:04:40.344 -07 000000444 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 375 ms.
17-03-18 04:04:40.344 -07 000000444 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-18 04:04:40.344 -07 000000444 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:04:40.354 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 04:04:40.354 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-18 04:04:40.354 -07 000000444 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 04:04:40.364 -07 000000444 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-18 04:04:40.514 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1151
17-03-18 04:04:40.514 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1151
17-03-18 04:04:40.514 -07 000000437 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:04:40.514 -07 000000437 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:04:40.514 -07 000000437 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-18 04:04:40.514 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1151
17-03-18 04:04:40.514 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1151
17-03-18 04:04:40.514 -07 000000625 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:04:40.514 -07 000000625 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:04:40.514 -07 000000625 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-18 04:04:40.704 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP 1340
17-03-18 04:04:40.704 -07 000000618 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:04:40.704 -07 000000610 INF: FPGA: 'CAMDBLSNAP 414 414 199 199 28669 150' command took 2 ms to send, 1342 ms to get response, and 1348 ms overall
17-03-18 04:04:40.704 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 04:04:40.704 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 9 at Y-position 65.71337890625, Z-Position -0.130435061922267. ------
17-03-18 04:04:40.704 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:04:40.704 -07 000000444 INF: Y Motor: MoveYZ optimized starting. Moving Y to 66.5526 mm, moving Z to -0.13687 mm
17-03-18 04:04:40.704 -07 000000444 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:04:40.714 -07 000000480 INF: Y Motor: Entering MoveAbsStepped (target = 106484 steps, sync = True, waitForSettling = True)
17-03-18 04:04:40.714 -07 000000480 INF: Y Motor: Moving to 66.5526 mm, started at 65.7134 mm, delta = 0.8392 mm
17-03-18 04:04:40.714 -07 000000455 INF: Z Motor: Entering MoveAbsStepped (DAC = 29899, sync = True, waitForSettling = False)
17-03-18 04:04:40.714 -07 000000455 INF: Z Motor: Moving to -0.136869 mm, started at -0.130435 mm, distance = -6.43 um
17-03-18 04:04:40.714 -07 000000012 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:04:40.714 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 4 ms overall
17-03-18 04:04:40.724 -07 000000501 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:04:40.724 -07 000000611 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 120, FrontChillerTemperature: 3.990831,
17-03-18 04:04:40.734 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:04:40.734 -07 000000012 INF: FPGA: Recv YRDPOS 134582
17-03-18 04:04:40.744 -07 000000455 INF: FPGA: Xmit ZDACW 29899\n [Z Motor]
17-03-18 04:04:40.744 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 04:04:40.744 -07 000000480 INF: Y Motor: Encoder = 134582 = motor step 105142.2 = 65.7139 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:04:40.744 -07 000000590 INF: FPGA: Recv ZDACW
17-03-18 04:04:40.744 -07 000000480 INF: Y Motor: Last commanded position = 65.7226 mm (105156.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:04:40.744 -07 000000480 INF: Y Motor: Moving 1342 steps-19
17-03-18 04:04:40.754 -07 000000455 INF: FPGA: 'ZDACW 29899' command took 0 ms to send, 0 ms to get response, and 39 ms overall
17-03-18 04:04:40.764 -07 000000480 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:04:40.774 -07 000000455 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:04:40.774 -07 000000512 INF: FPGA: Recv ZDACR 29899
17-03-18 04:04:40.784 -07 000000455 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 04:04:40.784 -07 000000455 INF: Z Motor: MoveAbsStepped took 69 ms (did NOT wait for settling yet))
17-03-18 04:04:40.914 -07 000000437 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 400 ms.
17-03-18 04:04:40.914 -07 000000437 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 04:04:40.914 -07 000000437 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:04:40.914 -07 000000625 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 398 ms.
17-03-18 04:04:40.914 -07 000000625 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 04:04:40.914 -07 000000625 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:04:40.924 -07 000000625 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:04:40.924 -07 000000455 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:04:40.924 -07 000000501 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 210 ms overall
17-03-18 04:04:40.924 -07 000000437 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 04:04:40.924 -07 000000437 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 408 ms.
17-03-18 04:04:40.924 -07 000000625 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-18 04:04:41.134 -07 000000608 INF: FPGA: Recv YMVTILE
17-03-18 04:04:41.134 -07 000000480 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 391 ms overall
17-03-18 04:04:41.184 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:04:41.184 -07 000000608 INF: FPGA: Recv YRDPOS 136270
17-03-18 04:04:41.194 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 04:04:41.194 -07 000000480 INF: Y Motor: Encoder = 136270 = motor step 106460.9 = 66.5381 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:04:41.194 -07 000000480 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-18 04:04:41.194 -07 000000480 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 391 ms, distance = 0.839 mm, average velocity = 2.146 mm/sec
17-03-18 04:04:41.634 -07 000000012 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:04:41.634 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 119. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1710, R2=1777, Total=3487. Warn if over 250 bubbles per interval.
17-03-18 04:04:42.144 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:04:42.144 -07 000000590 INF: FPGA: Recv YRDPOS 136270
17-03-18 04:04:42.154 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:42.154 -07 000000480 INF: Y Motor: Encoder = 136270 = motor step 106460.9 = 66.5381 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:04:42.184 -07 000000480 INF: Y Motor: After move to 66.552605, error = -0.014519, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:04:42.184 -07 000000480 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:04:42.184 -07 000000480 INF: Y Motor: Moved to 66.5381 after 1473 ms (table move)
17-03-18 04:04:42.184 -07 000000444 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136869 mm (DAC = 29899)
17-03-18 04:04:42.184 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:42.194 -07 000000611 INF: FPGA: Recv ZSGSRD 30587
17-03-18 04:04:42.194 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 3 ms to get response, and 6 ms overall
17-03-18 04:04:42.194 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:42.194 -07 000000579 INF: FPGA: Recv ZSGSRD 30596
17-03-18 04:04:42.204 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:04:42.204 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:42.204 -07 000000455 INF: FPGA: Recv ZSGSRD 30595
17-03-18 04:04:42.214 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:42.214 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:42.214 -07 000000561 INF: FPGA: Recv ZSGSRD 30605
17-03-18 04:04:42.224 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:42.224 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:42.224 -07 000000611 INF: FPGA: Recv ZSGSRD 30594
17-03-18 04:04:42.234 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:42.234 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:42.234 -07 000000579 INF: FPGA: Recv ZSGSRD 30589
17-03-18 04:04:42.244 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:42.244 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:42.244 -07 000000608 INF: FPGA: Recv ZSGSRD 30590
17-03-18 04:04:42.254 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:42.254 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:42.254 -07 000000611 INF: FPGA: Recv ZSGSRD 30590
17-03-18 04:04:42.264 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:42.264 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:42.264 -07 000000579 INF: FPGA: Recv ZSGSRD 30593
17-03-18 04:04:42.274 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:42.274 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:42.274 -07 000000487 INF: FPGA: Recv ZSGSRD 30594
17-03-18 04:04:42.284 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:42.284 -07 000000444 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:04:42.284 -07 000000590 INF: FPGA: Recv ZPIEZORD 26396
17-03-18 04:04:42.294 -07 000000444 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:42.294 -07 000000444 INF: Z Motor: Piezo is near 36.4 V (nominally 0 to 100 V), expect near 45.6 V, since DAC is at 4.562 V. Piezo Error = -9.2 V.
17-03-18 04:04:42.294 -07 000000444 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.9 um, Read 10 ADC samples: Avg = 30593 (-136.1 uncal um), Error = 0.8 uncal um, Median = 30594 (-136.1 uncal um), StdDev = 5 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 30587 (-136.0 uncal um), Max = 30605 (-136.1 uncal um), Pos Noise = 12 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 04:04:42.294 -07 000000444 INF: Z Motor: ADC noise = 12, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30593, posNoise = 12, negNoise = 6
17-03-18 04:04:42.294 -07 000000444 INF: Z Motor: After move to -0.136869, error = 0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:04:42.294 -07 000000444 INF: Z Motor: Settle wait time = 1476 ms, measure time = 103 ms (allowed 150 ms), total time = 1579 ms
17-03-18 04:04:42.294 -07 000000444 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-18 04:04:42.344 -07 000000444 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1632 ms
17-03-18 04:04:42.344 -07 000000444 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:04:42.344 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:04:42.344 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:04:42.344 -07 000000437 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:04:42.344 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:04:42.344 -07 000000625 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:04:42.344 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:04:42.354 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:04:42.354 -07 000000625 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:04:42.354 -07 000000625 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 04:04:42.354 -07 000000625 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:04:42.364 -07 000000625 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 8 ms.
17-03-18 04:04:42.364 -07 000000625 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 14 ms.
17-03-18 04:04:42.374 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:04:42.414 -07 000000501 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:04:42.714 -07 000000512 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:04:42.714 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:04:42.714 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:04:42.714 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2404012176, 0x0, 559484976) start.
17-03-18 04:04:42.754 -07 000000455 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:04:42.754 -07 000000012 INF: FPGA: Recv CAMSNAP
17-03-18 04:04:42.754 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 2 ms to send, 377 ms to get response, and 385 ms overall
17-03-18 04:04:42.834 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2404012176, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 04:04:42.834 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:04:42.834 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 04:04:42.834 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 04:04:42.854 -07 000000512 INF: Autofocus start
17-03-18 04:04:42.854 -07 000000512 INF: MeasureProfile start
17-03-18 04:04:42.854 -07 000000487 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:04:42.854 -07 000000437 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:04:42.864 -07 000000487 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:04:42.864 -07 000000487 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:04:42.864 -07 000000512 INF: MeasureProfile done
17-03-18 04:04:42.864 -07 000000512 INF: X=0  Z correction [um]=-0.02394831
17-03-18 04:04:42.864 -07 000000512 INF: Autofocus finished
17-03-18 04:04:43.064 -07 000000611 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:04:43.064 -07 000000487 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:04:43.064 -07 000000610 INF: ------------ Scan Snapping tile 9 at Y-position 66.5380859375, Z-position -0.136859274064028. ----------
17-03-18 04:04:43.074 -07 000000610 INF: Cycle	120	Tile	9	Exposure Settings		A	414	G	199	T	199	C	414
17-03-18 04:04:43.074 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28406, sync = True, waitForSettling = True)
17-03-18 04:04:43.074 -07 000000610 INF: Z Motor: Moving to -0.130034 mm, started at -0.136859 mm, distance = 6.82 um
17-03-18 04:04:43.074 -07 000000610 INF: FPGA: Xmit ZDACW 28406\n [Z Motor]
17-03-18 04:04:43.074 -07 000000512 INF: FPGA: Recv ZDACW
17-03-18 04:04:43.084 -07 000000610 INF: FPGA: 'ZDACW 28406' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 04:04:43.084 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:04:43.084 -07 000000455 INF: FPGA: Recv ZDACR 28406
17-03-18 04:04:43.094 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:43.094 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:04:43.244 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:43.244 -07 000000561 INF: FPGA: Recv ZSGSRD 29539
17-03-18 04:04:43.254 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:43.254 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:43.254 -07 000000012 INF: FPGA: Recv ZSGSRD 29531
17-03-18 04:04:43.264 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:43.264 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:43.264 -07 000000590 INF: FPGA: Recv ZSGSRD 29524
17-03-18 04:04:43.274 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:43.274 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:43.274 -07 000000455 INF: FPGA: Recv ZSGSRD 29527
17-03-18 04:04:43.284 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:43.284 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:43.284 -07 000000611 INF: FPGA: Recv ZSGSRD 29537
17-03-18 04:04:43.294 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:43.294 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:43.294 -07 000000437 INF: FPGA: Recv ZSGSRD 29531
17-03-18 04:04:43.304 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:43.304 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:43.304 -07 000000512 INF: FPGA: Recv ZSGSRD 29535
17-03-18 04:04:43.314 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:43.314 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:43.314 -07 000000480 INF: FPGA: Recv ZSGSRD 29531
17-03-18 04:04:43.324 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 04:04:43.324 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:43.324 -07 000000444 INF: FPGA: Recv ZSGSRD 29540
17-03-18 04:04:43.334 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:43.334 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:43.334 -07 000000487 INF: FPGA: Recv ZSGSRD 29533
17-03-18 04:04:43.344 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:43.344 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:04:43.344 -07 000000611 INF: FPGA: Recv ZPIEZORD 24978
17-03-18 04:04:43.354 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:43.354 -07 000000610 INF: Z Motor: Piezo is near 33.4 V (nominally 0 to 100 V), expect near 43.3 V, since DAC is at 4.334 V. Piezo Error = -10.0 V.
17-03-18 04:04:43.354 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.0 um, Read 10 ADC samples: Avg = 29533 (-129.3 uncal um), Error = 0.8 uncal um, Median = 29532 (-129.3 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 29524 (-129.2 uncal um), Max = 29540 (-129.3 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-18 04:04:43.354 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29533, posNoise = 7, negNoise = 9
17-03-18 04:04:43.354 -07 000000610 INF: Z Motor: After move to -0.130034, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:04:43.354 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 04:04:43.354 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:04:43.354 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:04:43.354 -07 000000487 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:04:43.354 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:04:43.354 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:04:43.354 -07 000000590 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:04:43.354 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:04:43.354 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:04:43.354 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:04:43.354 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:04:43.354 -07 000000590 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:04:43.354 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:04:43.364 -07 000000590 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 04:04:43.364 -07 000000590 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:04:43.364 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 04:04:43.364 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:04:43.364 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 04:04:43.364 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 04:04:43.364 -07 000000590 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 04:04:43.364 -07 000000590 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 04:04:43.374 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 414 414 199 199 28583 150\n [Camera]
17-03-18 04:04:43.574 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:04:43.984 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 606
17-03-18 04:04:43.984 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 606
17-03-18 04:04:43.984 -07 000000437 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:04:43.984 -07 000000437 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:04:43.984 -07 000000437 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-18 04:04:43.994 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 606
17-03-18 04:04:43.994 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 606
17-03-18 04:04:43.994 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:04:43.994 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:04:43.994 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2684358704, 0x0, 418435064) start.
17-03-18 04:04:44.184 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28583 799
17-03-18 04:04:44.324 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning grn on 949
17-03-18 04:04:44.384 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2684358704, 0x0, 418435064) end. Duration was 392 ms.
17-03-18 04:04:44.384 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-18 04:04:44.384 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:04:44.384 -07 000000437 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 398 ms.
17-03-18 04:04:44.384 -07 000000437 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 04:04:44.384 -07 000000437 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:04:44.394 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:04:44.394 -07 000000437 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:04:44.394 -07 000000437 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 04:04:44.394 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-18 04:04:44.524 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1148
17-03-18 04:04:44.524 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1148
17-03-18 04:04:44.524 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:04:44.534 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:04:44.534 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 2719780968, 0x0, 391868352) start.
17-03-18 04:04:44.534 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1148
17-03-18 04:04:44.534 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1148
17-03-18 04:04:44.534 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:04:44.664 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:04:44.664 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) start.
17-03-18 04:04:44.724 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP 1340
17-03-18 04:04:44.724 -07 000000590 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:04:44.724 -07 000000610 INF: FPGA: 'CAMDBLSNAP 414 414 199 199 28583 150' command took 2 ms to send, 1341 ms to get response, and 1348 ms overall
17-03-18 04:04:44.724 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 04:04:44.724 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 10 at Y-position 66.5380859375, Z-Position -0.130049609193761. ------
17-03-18 04:04:44.724 -07 000000487 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:04:44.724 -07 000000608 INF: Y Motor: MoveYZ optimized starting. Moving Y to 67.3826 mm, moving Z to -0.13685 mm
17-03-18 04:04:44.724 -07 000000608 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:04:44.734 -07 000000455 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:04:44.734 -07 000000487 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 04:04:44.734 -07 000000625 INF: Z Motor: Entering MoveAbsStepped (DAC = 29896, sync = True, waitForSettling = False)
17-03-18 04:04:44.734 -07 000000625 INF: Z Motor: Moving to -0.136855 mm, started at -0.130050 mm, distance = -6.81 um
17-03-18 04:04:44.734 -07 000000625 INF: FPGA: Xmit ZDACW 29896\n [Z Motor]
17-03-18 04:04:44.734 -07 000000561 INF: Y Motor: Entering MoveAbsStepped (target = 107812 steps, sync = True, waitForSettling = True)
17-03-18 04:04:44.734 -07 000000561 INF: Y Motor: Moving to 67.3826 mm, started at 66.5381 mm, delta = 0.8445 mm
17-03-18 04:04:44.734 -07 000000590 INF: FPGA: Recv ZDACW
17-03-18 04:04:44.744 -07 000000625 INF: FPGA: 'ZDACW 29896' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:44.744 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:04:44.744 -07 000000447 INF: FPGA: Recv YRDPOS 136271
17-03-18 04:04:44.754 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 04:04:44.754 -07 000000561 INF: Y Motor: Encoder = 136271 = motor step 106461.7 = 66.5386 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:04:44.754 -07 000000487 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:04:44.754 -07 000000561 INF: Y Motor: Last commanded position = 66.5526 mm (106484.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:04:44.754 -07 000000561 INF: Y Motor: Moving 1350 steps-30
17-03-18 04:04:44.764 -07 000000625 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:04:44.764 -07 000000618 INF: FPGA: Recv ZDACR 29896
17-03-18 04:04:44.774 -07 000000625 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 04:04:44.774 -07 000000625 INF: Z Motor: MoveAbsStepped took 39 ms (did NOT wait for settling yet))
17-03-18 04:04:44.774 -07 000000561 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:04:44.934 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 2719780968, 0x0, 391868352) end. Duration was 404 ms.
17-03-18 04:04:44.934 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 04:04:44.934 -07 000000444 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:04:44.944 -07 000000444 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 04:04:44.944 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 410 ms.
17-03-18 04:04:44.954 -07 000000625 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:04:44.954 -07 000000487 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 193 ms to get response, and 223 ms overall
17-03-18 04:04:45.054 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) end. Duration was 395 ms.
17-03-18 04:04:45.054 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 04:04:45.054 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:04:45.064 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-18 04:04:45.064 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 532 ms.
17-03-18 04:04:45.144 -07 000000444 INF: FPGA: Recv YMVTILE
17-03-18 04:04:45.144 -07 000000561 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 391 ms overall
17-03-18 04:04:45.194 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:04:45.194 -07 000000618 INF: FPGA: Recv YRDPOS 137976
17-03-18 04:04:45.204 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 04:04:45.204 -07 000000561 INF: Y Motor: Encoder = 137976 = motor step 107793.8 = 67.3711 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:04:45.204 -07 000000561 INF: Y Motor: Position error before settling (table move) = -24 encoder counts (-0.012 mm)
17-03-18 04:04:45.204 -07 000000561 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 392 ms, distance = 0.845 mm, average velocity = 2.154 mm/sec
17-03-18 04:04:46.134 -07 000000590 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 120, FrontChillerTemperature: 3.996267,
17-03-18 04:04:46.154 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:04:46.154 -07 000000447 INF: FPGA: Recv YRDPOS 137976
17-03-18 04:04:46.164 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:46.164 -07 000000561 INF: Y Motor: Encoder = 137976 = motor step 107793.8 = 67.3711 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:04:46.194 -07 000000561 INF: Y Motor: After move to 67.382607, error = -0.011513, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:04:46.194 -07 000000561 INF: Y Motor: Position error after settling (table move) = -24 encoder counts (-0.012 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:04:46.194 -07 000000561 INF: Y Motor: Moved to 67.3711 after 1460 ms (table move)
17-03-18 04:04:46.194 -07 000000608 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136855 mm (DAC = 29896)
17-03-18 04:04:46.194 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:46.194 -07 000000590 INF: FPGA: Recv ZSGSRD 30606
17-03-18 04:04:46.204 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 04:04:46.204 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:46.204 -07 000000012 INF: FPGA: Recv ZSGSRD 30597
17-03-18 04:04:46.214 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:46.214 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:46.214 -07 000000012 INF: FPGA: Recv ZSGSRD 30597
17-03-18 04:04:46.224 -07 000000608 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:46.224 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:46.224 -07 000000447 INF: FPGA: Recv ZSGSRD 30588
17-03-18 04:04:46.234 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:46.234 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:46.234 -07 000000480 INF: FPGA: Recv ZSGSRD 30597
17-03-18 04:04:46.244 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:46.244 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:46.244 -07 000000444 INF: FPGA: Recv ZSGSRD 30590
17-03-18 04:04:46.254 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:46.254 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:46.254 -07 000000501 INF: FPGA: Recv ZSGSRD 30591
17-03-18 04:04:46.264 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:46.264 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:46.264 -07 000000437 INF: FPGA: Recv ZSGSRD 30592
17-03-18 04:04:46.274 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:46.274 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:46.274 -07 000000618 INF: FPGA: Recv ZSGSRD 30595
17-03-18 04:04:46.284 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:46.284 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:46.284 -07 000000487 INF: FPGA: Recv ZSGSRD 30600
17-03-18 04:04:46.294 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:46.294 -07 000000608 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:04:46.294 -07 000000590 INF: FPGA: Recv ZPIEZORD 26348
17-03-18 04:04:46.304 -07 000000608 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:46.304 -07 000000608 INF: Z Motor: Piezo is near 36.3 V (nominally 0 to 100 V), expect near 45.6 V, since DAC is at 4.562 V. Piezo Error = -9.3 V.
17-03-18 04:04:46.304 -07 000000608 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.9 um, Read 10 ADC samples: Avg = 30595 (-136.1 uncal um), Error = 0.8 uncal um, Median = 30596 (-136.1 uncal um), StdDev = 5 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 30588 (-136.0 uncal um), Max = 30606 (-136.1 uncal um), Pos Noise = 11 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 04:04:46.304 -07 000000608 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30595, posNoise = 11, negNoise = 7
17-03-18 04:04:46.304 -07 000000608 INF: Z Motor: After move to -0.136855, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:04:46.304 -07 000000608 INF: Z Motor: Settle wait time = 1464 ms, measure time = 106 ms (allowed 150 ms), total time = 1570 ms
17-03-18 04:04:46.304 -07 000000608 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-18 04:04:46.354 -07 000000608 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1622 ms
17-03-18 04:04:46.354 -07 000000608 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:04:46.354 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:04:46.354 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:04:46.354 -07 000000579 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:04:46.354 -07 000000487 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:04:46.354 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:04:46.354 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:04:46.354 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 04:04:46.354 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:04:46.364 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 04:04:46.364 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:04:46.374 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-18 04:04:46.374 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-18 04:04:46.374 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:04:46.424 -07 000000455 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:04:46.634 -07 000000012 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:04:46.634 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 119. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1710, R2=1777, Total=3487. Warn if over 250 bubbles per interval.
17-03-18 04:04:46.714 -07 000000437 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:04:46.724 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:04:46.724 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:04:46.724 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 610341080, 0x0, 559484976) start.
17-03-18 04:04:46.754 -07 000000618 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:04:46.764 -07 000000590 INF: FPGA: Recv CAMSNAP
17-03-18 04:04:46.764 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 380 ms to get response, and 384 ms overall
17-03-18 04:04:46.834 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 610341080, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 04:04:46.834 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:04:46.834 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 04:04:46.834 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 04:04:46.864 -07 000000579 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:04:46.864 -07 000000444 INF: Autofocus start
17-03-18 04:04:46.864 -07 000000444 INF: MeasureProfile start
17-03-18 04:04:46.864 -07 000000480 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:04:46.874 -07 000000579 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 04:04:46.874 -07 000000579 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:04:46.874 -07 000000444 INF: MeasureProfile done
17-03-18 04:04:46.874 -07 000000444 INF: X=0  Z correction [um]=-0.02394831
17-03-18 04:04:46.874 -07 000000444 INF: Autofocus finished
17-03-18 04:04:47.074 -07 000000447 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:04:47.074 -07 000000579 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:04:47.074 -07 000000610 INF: ------------ Scan Snapping tile 10 at Y-position 67.37109375, Z-position -0.136872122488311. ----------
17-03-18 04:04:47.074 -07 000000610 INF: Cycle	120	Tile	10	Exposure Settings		A	414	G	199	T	199	C	414
17-03-18 04:04:47.084 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28403, sync = True, waitForSettling = True)
17-03-18 04:04:47.084 -07 000000610 INF: Z Motor: Moving to -0.130021 mm, started at -0.136872 mm, distance = 6.85 um
17-03-18 04:04:47.084 -07 000000610 INF: FPGA: Xmit ZDACW 28403\n [Z Motor]
17-03-18 04:04:47.084 -07 000000611 INF: FPGA: Recv ZDACW
17-03-18 04:04:47.094 -07 000000610 INF: FPGA: 'ZDACW 28403' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 04:04:47.094 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:04:47.094 -07 000000625 INF: FPGA: Recv ZDACR 28403
17-03-18 04:04:47.104 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:47.104 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:04:47.254 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:47.254 -07 000000487 INF: FPGA: Recv ZSGSRD 29533
17-03-18 04:04:47.264 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:04:47.264 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:47.264 -07 000000437 INF: FPGA: Recv ZSGSRD 29529
17-03-18 04:04:47.274 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:47.274 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:47.274 -07 000000447 INF: FPGA: Recv ZSGSRD 29529
17-03-18 04:04:47.284 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:47.284 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:47.284 -07 000000590 INF: FPGA: Recv ZSGSRD 29528
17-03-18 04:04:47.294 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:47.294 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:47.294 -07 000000618 INF: FPGA: Recv ZSGSRD 29531
17-03-18 04:04:47.304 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:47.304 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:47.304 -07 000000501 INF: FPGA: Recv ZSGSRD 29539
17-03-18 04:04:47.314 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:47.314 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:47.314 -07 000000561 INF: FPGA: Recv ZSGSRD 29524
17-03-18 04:04:47.324 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:47.324 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:47.324 -07 000000625 INF: FPGA: Recv ZSGSRD 29529
17-03-18 04:04:47.334 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:47.334 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:47.334 -07 000000579 INF: FPGA: Recv ZSGSRD 29530
17-03-18 04:04:47.344 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:47.344 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:47.344 -07 000000437 INF: FPGA: Recv ZSGSRD 29529
17-03-18 04:04:47.354 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:47.354 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:04:47.354 -07 000000447 INF: FPGA: Recv ZPIEZORD 24991
17-03-18 04:04:47.364 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:47.364 -07 000000610 INF: Z Motor: Piezo is near 33.4 V (nominally 0 to 100 V), expect near 43.3 V, since DAC is at 4.334 V. Piezo Error = -10.0 V.
17-03-18 04:04:47.364 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.0 um, Read 10 ADC samples: Avg = 29530 (-129.3 uncal um), Error = 0.8 uncal um, Median = 29529 (-129.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 29524 (-129.2 uncal um), Max = 29539 (-129.3 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 04:04:47.364 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29530, posNoise = 9, negNoise = 6
17-03-18 04:04:47.364 -07 000000610 INF: Z Motor: After move to -0.130021, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:04:47.364 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 04:04:47.364 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:04:47.364 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:04:47.364 -07 000000437 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:04:47.364 -07 000000480 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:04:47.364 -07 000000444 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:04:47.364 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:04:47.364 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:04:47.364 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:04:47.364 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:04:47.364 -07 000000444 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:04:47.364 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:04:47.364 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:04:47.374 -07 000000444 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 04:04:47.374 -07 000000444 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:04:47.374 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 04:04:47.374 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:04:47.374 -07 000000444 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 04:04:47.374 -07 000000444 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 12 ms.
17-03-18 04:04:47.384 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 04:04:47.384 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 04:04:47.384 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 414 414 199 199 28580 150\n [Camera]
17-03-18 04:04:47.584 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:04:47.994 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 606
17-03-18 04:04:47.994 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 606
17-03-18 04:04:47.994 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:04:48.004 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 606
17-03-18 04:04:48.004 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 606
17-03-18 04:04:48.004 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:04:48.004 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:04:48.004 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-18 04:04:48.004 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:04:48.004 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) start.
17-03-18 04:04:48.194 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28580 799
17-03-18 04:04:48.344 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP turning grn on 949
17-03-18 04:04:48.374 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 372 ms.
17-03-18 04:04:48.374 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 372 ms.
17-03-18 04:04:48.374 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:04:48.374 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) end. Duration was 370 ms.
17-03-18 04:04:48.374 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 371 ms.
17-03-18 04:04:48.374 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:04:48.384 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 04:04:48.384 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-18 04:04:48.384 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 04:04:48.394 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-18 04:04:48.544 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1148
17-03-18 04:04:48.544 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1148
17-03-18 04:04:48.544 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:04:48.544 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1148
17-03-18 04:04:48.544 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1148
17-03-18 04:04:48.544 -07 000000611 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:04:48.664 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:04:48.664 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-18 04:04:48.674 -07 000000611 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:04:48.674 -07 000000611 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) start.
17-03-18 04:04:48.734 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP 1341
17-03-18 04:04:48.734 -07 000000618 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:04:48.734 -07 000000610 INF: FPGA: 'CAMDBLSNAP 414 414 199 199 28580 150' command took 2 ms to send, 1342 ms to get response, and 1348 ms overall
17-03-18 04:04:48.734 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 04:04:48.734 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 11 at Y-position 67.37109375, Z-Position -0.130030336557336. ------
17-03-18 04:04:48.734 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:04:48.734 -07 000000608 INF: Y Motor: MoveYZ optimized starting. Moving Y to 68.2126 mm, moving Z to -0.13638 mm
17-03-18 04:04:48.734 -07 000000608 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:04:48.744 -07 000000487 INF: Z Motor: Entering MoveAbsStepped (DAC = 29793, sync = True, waitForSettling = False)
17-03-18 04:04:48.744 -07 000000487 INF: Z Motor: Moving to -0.136384 mm, started at -0.130030 mm, distance = -6.35 um
17-03-18 04:04:48.744 -07 000000625 INF: Y Motor: Entering MoveAbsStepped (target = 109140 steps, sync = True, waitForSettling = True)
17-03-18 04:04:48.744 -07 000000625 INF: Y Motor: Moving to 68.2126 mm, started at 67.3711 mm, delta = 0.8415 mm
17-03-18 04:04:48.744 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:04:48.744 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 3 ms to get response, and 4 ms overall
17-03-18 04:04:48.744 -07 000000487 INF: FPGA: Xmit ZDACW 29793\n [Z Motor]
17-03-18 04:04:48.744 -07 000000561 INF: FPGA: Recv ZDACW
17-03-18 04:04:48.754 -07 000000487 INF: FPGA: 'ZDACW 29793' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 04:04:48.754 -07 000000512 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:04:48.764 -07 000000625 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:04:48.764 -07 000000012 INF: FPGA: Recv YRDPOS 137977
17-03-18 04:04:48.774 -07 000000625 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-18 04:04:48.774 -07 000000487 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:04:48.774 -07 000000625 INF: Y Motor: Encoder = 137977 = motor step 107794.5 = 67.3716 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:04:48.774 -07 000000012 INF: FPGA: Recv ZDACR 29793
17-03-18 04:04:48.774 -07 000000625 INF: Y Motor: Last commanded position = 67.3826 mm (107812.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:04:48.774 -07 000000625 INF: Y Motor: Moving 1346 steps-24
17-03-18 04:04:48.784 -07 000000625 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:04:48.784 -07 000000487 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 04:04:48.784 -07 000000487 INF: Z Motor: MoveAbsStepped took 38 ms (did NOT wait for settling yet))
17-03-18 04:04:48.954 -07 000000012 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:04:48.954 -07 000000512 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 209 ms overall
17-03-18 04:04:49.064 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 397 ms.
17-03-18 04:04:49.064 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 04:04:49.064 -07 000000444 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:04:49.064 -07 000000611 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) end. Duration was 395 ms.
17-03-18 04:04:49.064 -07 000000611 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-18 04:04:49.064 -07 000000611 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:04:49.074 -07 000000444 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:04:49.074 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 529 ms.
17-03-18 04:04:49.074 -07 000000611 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:04:49.074 -07 000000611 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 534 ms.
17-03-18 04:04:49.154 -07 000000590 INF: FPGA: Recv YMVTILE
17-03-18 04:04:49.154 -07 000000625 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 382 ms overall
17-03-18 04:04:49.204 -07 000000625 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:04:49.204 -07 000000447 INF: FPGA: Recv YRDPOS 139682
17-03-18 04:04:49.214 -07 000000625 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 04:04:49.214 -07 000000625 INF: Y Motor: Encoder = 139682 = motor step 109126.6 = 68.2041 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:04:49.214 -07 000000625 INF: Y Motor: Position error before settling (table move) = -17 encoder counts (-0.008 mm)
17-03-18 04:04:49.214 -07 000000625 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 382 ms, distance = 0.842 mm, average velocity = 2.203 mm/sec
17-03-18 04:04:50.164 -07 000000625 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:04:50.164 -07 000000501 INF: FPGA: Recv YRDPOS 139682
17-03-18 04:04:50.174 -07 000000625 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:04:50.174 -07 000000625 INF: Y Motor: Encoder = 139682 = motor step 109126.6 = 68.2041 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:04:50.194 -07 000000625 INF: Y Motor: After move to 68.212608, error = -0.008507, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:04:50.204 -07 000000625 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:04:50.204 -07 000000625 INF: Y Motor: Moved to 68.2041 after 1457 ms (table move)
17-03-18 04:04:50.204 -07 000000608 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136384 mm (DAC = 29793)
17-03-18 04:04:50.204 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:50.204 -07 000000447 INF: FPGA: Recv ZSGSRD 30528
17-03-18 04:04:50.214 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:04:50.214 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:50.214 -07 000000618 INF: FPGA: Recv ZSGSRD 30511
17-03-18 04:04:50.224 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:50.224 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:50.224 -07 000000512 INF: FPGA: Recv ZSGSRD 30522
17-03-18 04:04:50.234 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:50.234 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:50.234 -07 000000611 INF: FPGA: Recv ZSGSRD 30517
17-03-18 04:04:50.244 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:50.244 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:50.244 -07 000000437 INF: FPGA: Recv ZSGSRD 30519
17-03-18 04:04:50.254 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:50.254 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:50.254 -07 000000012 INF: FPGA: Recv ZSGSRD 30516
17-03-18 04:04:50.264 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:50.264 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:50.264 -07 000000512 INF: FPGA: Recv ZSGSRD 30519
17-03-18 04:04:50.274 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:50.274 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:50.274 -07 000000501 INF: FPGA: Recv ZSGSRD 30514
17-03-18 04:04:50.284 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:50.284 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:50.284 -07 000000012 INF: FPGA: Recv ZSGSRD 30515
17-03-18 04:04:50.294 -07 000000608 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:50.294 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:50.294 -07 000000579 INF: FPGA: Recv ZSGSRD 30512
17-03-18 04:04:50.304 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:50.304 -07 000000608 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:04:50.304 -07 000000447 INF: FPGA: Recv ZPIEZORD 26311
17-03-18 04:04:50.314 -07 000000608 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:50.314 -07 000000608 INF: Z Motor: Piezo is near 36.2 V (nominally 0 to 100 V), expect near 45.5 V, since DAC is at 4.546 V. Piezo Error = -9.3 V.
17-03-18 04:04:50.314 -07 000000608 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.4 um, Read 10 ADC samples: Avg = 30517 (-135.6 uncal um), Error = 0.8 uncal um, Median = 30516 (-135.6 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 30511 (-135.5 uncal um), Max = 30528 (-135.6 uncal um), Pos Noise = 11 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 04:04:50.314 -07 000000608 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30517, posNoise = 11, negNoise = 6
17-03-18 04:04:50.314 -07 000000608 INF: Z Motor: After move to -0.136384, error = 0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:04:50.314 -07 000000608 INF: Z Motor: Settle wait time = 1461 ms, measure time = 107 ms (allowed 150 ms), total time = 1568 ms
17-03-18 04:04:50.314 -07 000000608 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-18 04:04:50.364 -07 000000608 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1620 ms
17-03-18 04:04:50.364 -07 000000608 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:04:50.364 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:04:50.364 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:04:50.364 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:04:50.364 -07 000000579 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:04:50.364 -07 000000012 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:04:50.364 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:04:50.364 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:04:50.364 -07 000000012 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:04:50.374 -07 000000012 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 04:04:50.374 -07 000000012 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:04:50.384 -07 000000012 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-18 04:04:50.384 -07 000000012 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-18 04:04:50.384 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:04:50.434 -07 000000608 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:04:50.734 -07 000000012 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:04:50.734 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:04:50.734 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:04:50.734 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2298580584, 0x0, 559484976) start.
17-03-18 04:04:50.774 -07 000000590 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:04:50.774 -07 000000579 INF: FPGA: Recv CAMSNAP
17-03-18 04:04:50.774 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 381 ms to get response, and 384 ms overall
17-03-18 04:04:50.864 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2298580584, 0x0, 559484976) end. Duration was 127 ms.
17-03-18 04:04:50.864 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:04:50.864 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 04:04:50.864 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-18 04:04:50.874 -07 000000480 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:04:50.874 -07 000000012 INF: Autofocus start
17-03-18 04:04:50.874 -07 000000012 INF: MeasureProfile start
17-03-18 04:04:50.874 -07 000000512 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:04:50.884 -07 000000480 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:04:50.884 -07 000000480 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:04:50.884 -07 000000012 INF: MeasureProfile done
17-03-18 04:04:50.884 -07 000000012 INF: X=16  Z correction [um]=0.0530179
17-03-18 04:04:50.884 -07 000000012 INF: Autofocus finished
17-03-18 04:04:51.084 -07 000000455 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:04:51.084 -07 000000480 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:04:51.084 -07 000000610 INF: ------------ Scan Snapping tile 11 at Y-position 68.2041015625, Z-position -0.136371033941254. ----------
17-03-18 04:04:51.094 -07 000000610 INF: Cycle	120	Tile	11	Exposure Settings		A	414	G	199	T	199	C	414
17-03-18 04:04:51.094 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28317, sync = True, waitForSettling = True)
17-03-18 04:04:51.094 -07 000000610 INF: Z Motor: Moving to -0.129627 mm, started at -0.136371 mm, distance = 6.74 um
17-03-18 04:04:51.094 -07 000000610 INF: FPGA: Xmit ZDACW 28317\n [Z Motor]
17-03-18 04:04:51.094 -07 000000512 INF: FPGA: Recv ZDACW
17-03-18 04:04:51.104 -07 000000610 INF: FPGA: 'ZDACW 28317' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 04:04:51.104 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:04:51.104 -07 000000608 INF: FPGA: Recv ZDACR 28317
17-03-18 04:04:51.114 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 04:04:51.114 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:04:51.264 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:51.264 -07 000000487 INF: FPGA: Recv ZSGSRD 29471
17-03-18 04:04:51.274 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:51.274 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:51.274 -07 000000608 INF: FPGA: Recv ZSGSRD 29463
17-03-18 04:04:51.284 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:51.284 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:51.284 -07 000000444 INF: FPGA: Recv ZSGSRD 29464
17-03-18 04:04:51.294 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:51.294 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:51.294 -07 000000501 INF: FPGA: Recv ZSGSRD 29460
17-03-18 04:04:51.304 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:51.304 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:51.304 -07 000000455 INF: FPGA: Recv ZSGSRD 29467
17-03-18 04:04:51.314 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:51.314 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:51.314 -07 000000447 INF: FPGA: Recv ZSGSRD 29464
17-03-18 04:04:51.324 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:51.324 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:51.324 -07 000000012 INF: FPGA: Recv ZSGSRD 29466
17-03-18 04:04:51.334 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:51.334 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:51.334 -07 000000480 INF: FPGA: Recv ZSGSRD 29470
17-03-18 04:04:51.344 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:51.344 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:51.344 -07 000000561 INF: FPGA: Recv ZSGSRD 29474
17-03-18 04:04:51.354 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:51.354 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:51.354 -07 000000611 INF: FPGA: Recv ZSGSRD 29466
17-03-18 04:04:51.364 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:51.364 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:04:51.364 -07 000000579 INF: FPGA: Recv ZPIEZORD 24919
17-03-18 04:04:51.374 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:51.374 -07 000000610 INF: Z Motor: Piezo is near 33.2 V (nominally 0 to 100 V), expect near 43.2 V, since DAC is at 4.321 V. Piezo Error = -10.0 V.
17-03-18 04:04:51.374 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.6 um, Read 10 ADC samples: Avg = 29466 (-128.8 uncal um), Error = 0.8 uncal um, Median = 29466 (-128.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 29460 (-128.8 uncal um), Max = 29474 (-128.9 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 04:04:51.374 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29466, posNoise = 8, negNoise = 6
17-03-18 04:04:51.374 -07 000000610 INF: Z Motor: After move to -0.129627, error = 0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:04:51.374 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 04:04:51.374 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:04:51.374 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:04:51.374 -07 000000447 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:04:51.374 -07 000000611 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:04:51.374 -07 000000487 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:04:51.374 -07 000000487 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:04:51.374 -07 000000608 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:04:51.374 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:04:51.374 -07 000000487 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 04:04:51.374 -07 000000487 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:04:51.374 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 04:04:51.374 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:04:51.384 -07 000000487 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 04:04:51.384 -07 000000487 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:04:51.384 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 04:04:51.384 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:04:51.394 -07 000000487 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 12 ms.
17-03-18 04:04:51.394 -07 000000487 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 18 ms.
17-03-18 04:04:51.394 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 12 ms.
17-03-18 04:04:51.394 -07 000000608 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 18 ms.
17-03-18 04:04:51.394 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 414 414 199 199 28494 150\n [Camera]
17-03-18 04:04:51.504 -07 000000608 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 120, FrontChillerTemperature: 3.973092,
17-03-18 04:04:51.594 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP turning red on 194
17-03-18 04:04:51.634 -07 000000561 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:04:51.634 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 119. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1710, R2=1777, Total=3487. Warn if over 250 bubbles per interval.
17-03-18 04:04:52.014 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 606
17-03-18 04:04:52.014 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 606
17-03-18 04:04:52.014 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:04:52.014 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 606
17-03-18 04:04:52.014 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:04:52.014 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 606
17-03-18 04:04:52.014 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 2317661968, 0x0, 391868352) start.
17-03-18 04:04:52.014 -07 000000437 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:04:52.024 -07 000000437 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:04:52.024 -07 000000437 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) start.
17-03-18 04:04:52.204 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28494 799
17-03-18 04:04:52.354 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP turning grn on 949
17-03-18 04:04:52.394 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 2317661968, 0x0, 391868352) end. Duration was 379 ms.
17-03-18 04:04:52.394 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-18 04:04:52.394 -07 000000625 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:04:52.394 -07 000000437 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) end. Duration was 376 ms.
17-03-18 04:04:52.394 -07 000000437 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-18 04:04:52.394 -07 000000437 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:04:52.404 -07 000000625 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:04:52.404 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-18 04:04:52.404 -07 000000437 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 04:04:52.414 -07 000000437 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 04:04:52.554 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1148
17-03-18 04:04:52.554 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1148
17-03-18 04:04:52.554 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:04:52.554 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1148
17-03-18 04:04:52.554 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1148
17-03-18 04:04:52.554 -07 000000625 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:04:52.564 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:04:52.564 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) start.
17-03-18 04:04:52.564 -07 000000625 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:04:52.564 -07 000000625 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-18 04:04:52.744 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP 1340
17-03-18 04:04:52.744 -07 000000608 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:04:52.744 -07 000000610 INF: FPGA: 'CAMDBLSNAP 414 414 199 199 28494 150' command took 2 ms to send, 1344 ms to get response, and 1347 ms overall
17-03-18 04:04:52.744 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 04:04:52.744 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 12 at Y-position 68.2041015625, Z-Position -0.129619186980263. ------
17-03-18 04:04:52.744 -07 000000590 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:04:52.744 -07 000000437 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.0426 mm, moving Z to -0.13630 mm
17-03-18 04:04:52.744 -07 000000437 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:04:52.754 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:04:52.754 -07 000000590 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 4 ms to get response, and 5 ms overall
17-03-18 04:04:52.754 -07 000000590 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:04:52.754 -07 000000512 INF: Z Motor: Entering MoveAbsStepped (DAC = 29774, sync = True, waitForSettling = False)
17-03-18 04:04:52.754 -07 000000512 INF: Z Motor: Moving to -0.136297 mm, started at -0.129619 mm, distance = -6.68 um
17-03-18 04:04:52.754 -07 000000447 INF: Y Motor: Entering MoveAbsStepped (target = 110468 steps, sync = True, waitForSettling = True)
17-03-18 04:04:52.754 -07 000000447 INF: Y Motor: Moving to 69.0426 mm, started at 68.2041 mm, delta = 0.8385 mm
17-03-18 04:04:52.764 -07 000000447 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:04:52.764 -07 000000444 INF: FPGA: Recv YRDPOS 139683
17-03-18 04:04:52.774 -07 000000512 INF: FPGA: Xmit ZDACW 29774\n [Z Motor]
17-03-18 04:04:52.774 -07 000000447 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-18 04:04:52.774 -07 000000447 INF: Y Motor: Encoder = 139683 = motor step 109127.3 = 68.2046 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:04:52.774 -07 000000480 INF: FPGA: Recv ZDACW
17-03-18 04:04:52.774 -07 000000447 INF: Y Motor: Last commanded position = 68.2126 mm (109140.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:04:52.774 -07 000000447 INF: Y Motor: Moving 1341 steps-17
17-03-18 04:04:52.784 -07 000000512 INF: FPGA: 'ZDACW 29774' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-18 04:04:52.784 -07 000000447 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:04:52.794 -07 000000512 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:04:52.794 -07 000000444 INF: FPGA: Recv ZDACR 29774
17-03-18 04:04:52.804 -07 000000512 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 04:04:52.804 -07 000000512 INF: Z Motor: MoveAbsStepped took 44 ms (did NOT wait for settling yet))
17-03-18 04:04:52.934 -07 000000625 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 373 ms.
17-03-18 04:04:52.934 -07 000000625 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 373 ms.
17-03-18 04:04:52.934 -07 000000625 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:04:52.934 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) end. Duration was 376 ms.
17-03-18 04:04:52.934 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-18 04:04:52.934 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:04:52.944 -07 000000625 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:04:52.944 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:04:52.944 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-18 04:04:52.944 -07 000000625 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-18 04:04:52.954 -07 000000444 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:04:52.954 -07 000000590 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 198 ms to get response, and 202 ms overall
17-03-18 04:04:53.154 -07 000000480 INF: FPGA: Recv YMVTILE
17-03-18 04:04:53.154 -07 000000447 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 382 ms overall
17-03-18 04:04:53.204 -07 000000447 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:04:53.204 -07 000000444 INF: FPGA: Recv YRDPOS 141366
17-03-18 04:04:53.214 -07 000000447 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 04:04:53.214 -07 000000447 INF: Y Motor: Encoder = 141366 = motor step 110442.2 = 69.0264 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:04:53.214 -07 000000447 INF: Y Motor: Position error before settling (table move) = -33 encoder counts (-0.016 mm)
17-03-18 04:04:53.214 -07 000000447 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 382 ms, distance = 0.839 mm, average velocity = 2.195 mm/sec
17-03-18 04:04:54.164 -07 000000447 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:04:54.164 -07 000000501 INF: FPGA: Recv YRDPOS 141366
17-03-18 04:04:54.174 -07 000000447 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:04:54.174 -07 000000447 INF: Y Motor: Encoder = 141366 = motor step 110442.2 = 69.0264 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:04:54.194 -07 000000447 INF: Y Motor: After move to 69.042610, error = -0.016243, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:04:54.204 -07 000000447 INF: Y Motor: Position error after settling (table move) = -33 encoder counts (-0.016 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:04:54.204 -07 000000447 INF: Y Motor: Moved to 69.0264 after 1444 ms (table move)
17-03-18 04:04:54.204 -07 000000437 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136297 mm (DAC = 29774)
17-03-18 04:04:54.204 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:54.204 -07 000000561 INF: FPGA: Recv ZSGSRD 30520
17-03-18 04:04:54.214 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 04:04:54.214 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:54.214 -07 000000447 INF: FPGA: Recv ZSGSRD 30501
17-03-18 04:04:54.224 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:54.224 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:54.224 -07 000000480 INF: FPGA: Recv ZSGSRD 30511
17-03-18 04:04:54.234 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:54.234 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:54.234 -07 000000618 INF: FPGA: Recv ZSGSRD 30506
17-03-18 04:04:54.244 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:54.244 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:54.244 -07 000000455 INF: FPGA: Recv ZSGSRD 30505
17-03-18 04:04:54.254 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:54.254 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:54.254 -07 000000447 INF: FPGA: Recv ZSGSRD 30497
17-03-18 04:04:54.264 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:54.264 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:54.264 -07 000000590 INF: FPGA: Recv ZSGSRD 30504
17-03-18 04:04:54.274 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:54.274 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:54.274 -07 000000608 INF: FPGA: Recv ZSGSRD 30502
17-03-18 04:04:54.284 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:54.284 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:54.284 -07 000000501 INF: FPGA: Recv ZSGSRD 30507
17-03-18 04:04:54.294 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:54.294 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:54.294 -07 000000611 INF: FPGA: Recv ZSGSRD 30511
17-03-18 04:04:54.304 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:54.304 -07 000000437 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:04:54.304 -07 000000455 INF: FPGA: Recv ZPIEZORD 26327
17-03-18 04:04:54.314 -07 000000437 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:54.314 -07 000000437 INF: Z Motor: Piezo is near 36.2 V (nominally 0 to 100 V), expect near 45.4 V, since DAC is at 4.543 V. Piezo Error = -9.2 V.
17-03-18 04:04:54.314 -07 000000437 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.3 um, Read 10 ADC samples: Avg = 30506 (-135.5 uncal um), Error = 0.8 uncal um, Median = 30506 (-135.5 uncal um), StdDev = 6 (0.0 uncal um), Range = 23 (0.1 uncal um), Min = 30497 (-135.4 uncal um), Max = 30520 (-135.6 uncal um), Pos Noise = 14 (0.1 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-18 04:04:54.314 -07 000000437 INF: Z Motor: ADC noise = 14, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30506, posNoise = 14, negNoise = 9
17-03-18 04:04:54.314 -07 000000437 INF: Z Motor: After move to -0.136297, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:04:54.314 -07 000000437 INF: Z Motor: Settle wait time = 1449 ms, measure time = 106 ms (allowed 150 ms), total time = 1555 ms
17-03-18 04:04:54.314 -07 000000437 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-18 04:04:54.364 -07 000000437 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1610 ms
17-03-18 04:04:54.364 -07 000000437 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:04:54.364 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:04:54.364 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:04:54.364 -07 000000611 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:04:54.364 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:04:54.364 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:04:54.364 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:04:54.364 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:04:54.364 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:04:54.374 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 04:04:54.374 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:04:54.384 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-18 04:04:54.384 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-18 04:04:54.384 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:04:54.434 -07 000000447 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:04:54.734 -07 000000618 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:04:54.734 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:04:54.734 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:04:54.844 -07 000000437 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:04:54.844 -07 000000437 INF: FPGA: Recv CAMSNAP
17-03-18 04:04:54.844 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2353084232, 0x0, 559484976) start.
17-03-18 04:04:54.844 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 450 ms to get response, and 454 ms overall
17-03-18 04:04:54.954 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2353084232, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 04:04:54.954 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:04:54.954 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 04:04:54.954 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 225 ms.
17-03-18 04:04:55.044 -07 000000480 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:04:55.044 -07 000000444 INF: Autofocus start
17-03-18 04:04:55.044 -07 000000444 INF: MeasureProfile start
17-03-18 04:04:55.044 -07 000000579 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:04:55.054 -07 000000480 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:04:55.054 -07 000000480 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:04:55.054 -07 000000444 INF: MeasureProfile done
17-03-18 04:04:55.054 -07 000000444 INF: X=19  Z correction [um]=0.06744906
17-03-18 04:04:55.054 -07 000000444 INF: Autofocus finished
17-03-18 04:04:55.254 -07 000000447 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:04:55.254 -07 000000480 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 195 ms to get response, and 205 ms overall
17-03-18 04:04:55.264 -07 000000610 INF: ------------ Scan Snapping tile 12 at Y-position 69.0263671875, Z-position -0.136300367607695. ----------
17-03-18 04:04:55.264 -07 000000610 INF: Cycle	120	Tile	12	Exposure Settings		A	414	G	199	T	199	C	414
17-03-18 04:04:55.264 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28301, sync = True, waitForSettling = True)
17-03-18 04:04:55.264 -07 000000610 INF: Z Motor: Moving to -0.129554 mm, started at -0.136300 mm, distance = 6.75 um
17-03-18 04:04:55.264 -07 000000610 INF: FPGA: Xmit ZDACW 28301\n [Z Motor]
17-03-18 04:04:55.264 -07 000000455 INF: FPGA: Recv ZDACW
17-03-18 04:04:55.274 -07 000000610 INF: FPGA: 'ZDACW 28301' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:04:55.274 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:04:55.274 -07 000000618 INF: FPGA: Recv ZDACR 28301
17-03-18 04:04:55.284 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:55.284 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:04:55.434 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:55.434 -07 000000480 INF: FPGA: Recv ZSGSRD 29457
17-03-18 04:04:55.444 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:04:55.444 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:55.444 -07 000000447 INF: FPGA: Recv ZSGSRD 29454
17-03-18 04:04:55.454 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:55.454 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:55.454 -07 000000455 INF: FPGA: Recv ZSGSRD 29456
17-03-18 04:04:55.464 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:55.464 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:55.464 -07 000000444 INF: FPGA: Recv ZSGSRD 29455
17-03-18 04:04:55.474 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:55.474 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:55.474 -07 000000625 INF: FPGA: Recv ZSGSRD 29455
17-03-18 04:04:55.484 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:55.484 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:55.484 -07 000000579 INF: FPGA: Recv ZSGSRD 29455
17-03-18 04:04:55.494 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:55.494 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:55.494 -07 000000012 INF: FPGA: Recv ZSGSRD 29453
17-03-18 04:04:55.504 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:55.504 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:55.504 -07 000000590 INF: FPGA: Recv ZSGSRD 29458
17-03-18 04:04:55.514 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:55.514 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:55.514 -07 000000480 INF: FPGA: Recv ZSGSRD 29455
17-03-18 04:04:55.524 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:55.524 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:55.524 -07 000000487 INF: FPGA: Recv ZSGSRD 29455
17-03-18 04:04:55.534 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:55.534 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:04:55.534 -07 000000561 INF: FPGA: Recv ZPIEZORD 24913
17-03-18 04:04:55.544 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:55.544 -07 000000610 INF: Z Motor: Piezo is near 33.2 V (nominally 0 to 100 V), expect near 43.2 V, since DAC is at 4.318 V. Piezo Error = -10.0 V.
17-03-18 04:04:55.544 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.6 um, Read 10 ADC samples: Avg = 29455 (-128.8 uncal um), Error = 0.8 uncal um, Median = 29455 (-128.8 uncal um), StdDev = 1 (0.0 uncal um), Range = 5 (0.0 uncal um), Min = 29453 (-128.8 uncal um), Max = 29458 (-128.8 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 2 (0.0 uncal um)
17-03-18 04:04:55.544 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29455, posNoise = 3, negNoise = 2
17-03-18 04:04:55.544 -07 000000610 INF: Z Motor: After move to -0.129554, error = 0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:04:55.544 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 04:04:55.544 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:04:55.544 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:04:55.544 -07 000000625 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:04:55.544 -07 000000444 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:04:55.544 -07 000000590 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:04:55.544 -07 000000611 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:04:55.544 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:04:55.544 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:04:55.544 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:04:55.544 -07 000000611 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:04:55.544 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:04:55.544 -07 000000590 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:04:55.554 -07 000000611 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 04:04:55.554 -07 000000611 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:04:55.554 -07 000000590 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 04:04:55.554 -07 000000590 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:04:55.564 -07 000000590 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 04:04:55.564 -07 000000590 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 04:04:55.564 -07 000000611 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-18 04:04:55.564 -07 000000611 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 04:04:55.564 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 414 414 199 199 28478 150\n [Camera]
17-03-18 04:04:55.764 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:04:56.174 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 606
17-03-18 04:04:56.174 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 606
17-03-18 04:04:56.184 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:04:56.184 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 606
17-03-18 04:04:56.184 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 606
17-03-18 04:04:56.184 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:04:56.184 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:04:56.184 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 583729424, 0x0, 391868352) start.
17-03-18 04:04:56.184 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:04:56.184 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-18 04:04:56.374 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28478 799
17-03-18 04:04:56.524 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning grn on 949
17-03-18 04:04:56.554 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 366 ms.
17-03-18 04:04:56.554 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 367 ms.
17-03-18 04:04:56.554 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:04:56.554 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:04:56.564 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 583729424, 0x0, 391868352) end. Duration was 374 ms.
17-03-18 04:04:56.564 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 374 ms.
17-03-18 04:04:56.564 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:04:56.564 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:04:56.564 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-18 04:04:56.564 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-18 04:04:56.634 -07 000000608 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:04:56.634 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 119. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1710, R2=1777, Total=3487. Warn if over 250 bubbles per interval.
17-03-18 04:04:56.724 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1148
17-03-18 04:04:56.724 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1148
17-03-18 04:04:56.724 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:04:56.724 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1148
17-03-18 04:04:56.724 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1148
17-03-18 04:04:56.724 -07 000000437 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:04:56.844 -07 000000437 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:04:56.844 -07 000000437 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-18 04:04:56.844 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:04:56.844 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) start.
17-03-18 04:04:56.864 -07 000000611 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 120, FrontChillerTemperature: 3.979922,
17-03-18 04:04:56.914 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP 1340
17-03-18 04:04:56.914 -07 000000611 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:04:56.914 -07 000000610 INF: FPGA: 'CAMDBLSNAP 414 414 199 199 28478 150' command took 2 ms to send, 1341 ms to get response, and 1348 ms overall
17-03-18 04:04:56.914 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 04:04:56.914 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 13 at Y-position 69.0263671875, Z-Position -0.129548520646704. ------
17-03-18 04:04:56.914 -07 000000561 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:04:56.914 -07 000000625 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.8726 mm, moving Z to -0.13603 mm
17-03-18 04:04:56.914 -07 000000625 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:04:56.924 -07 000000480 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:04:56.924 -07 000000487 INF: Y Motor: Entering MoveAbsStepped (target = 111796 steps, sync = True, waitForSettling = True)
17-03-18 04:04:56.924 -07 000000487 INF: Y Motor: Moving to 69.8726 mm, started at 69.0264 mm, delta = 0.8462 mm
17-03-18 04:04:56.924 -07 000000487 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:04:56.924 -07 000000444 INF: Z Motor: Entering MoveAbsStepped (DAC = 29716, sync = True, waitForSettling = False)
17-03-18 04:04:56.924 -07 000000444 INF: Z Motor: Moving to -0.136031 mm, started at -0.129549 mm, distance = -6.48 um
17-03-18 04:04:56.924 -07 000000561 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 04:04:56.924 -07 000000455 INF: FPGA: Recv YRDPOS 141367
17-03-18 04:04:56.934 -07 000000487 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 04:04:56.934 -07 000000487 INF: Y Motor: Encoder = 141367 = motor step 110443.0 = 69.0269 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:04:56.934 -07 000000444 INF: FPGA: Xmit ZDACW 29716\n [Z Motor]
17-03-18 04:04:56.934 -07 000000480 INF: FPGA: Recv ZDACW
17-03-18 04:04:56.934 -07 000000487 INF: Y Motor: Last commanded position = 69.0426 mm (110468.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:04:56.934 -07 000000487 INF: Y Motor: Moving 1353 steps-33
17-03-18 04:04:56.944 -07 000000444 INF: FPGA: 'ZDACW 29716' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-18 04:04:56.944 -07 000000561 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:04:56.954 -07 000000487 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:04:56.964 -07 000000444 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:04:56.964 -07 000000455 INF: FPGA: Recv ZDACR 29716
17-03-18 04:04:56.974 -07 000000444 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 04:04:56.974 -07 000000444 INF: Z Motor: MoveAbsStepped took 48 ms (did NOT wait for settling yet))
17-03-18 04:04:57.144 -07 000000611 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:04:57.144 -07 000000561 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 220 ms overall
17-03-18 04:04:57.234 -07 000000437 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 398 ms.
17-03-18 04:04:57.234 -07 000000437 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 04:04:57.234 -07 000000437 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:04:57.244 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) end. Duration was 397 ms.
17-03-18 04:04:57.244 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 04:04:57.244 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:04:57.244 -07 000000437 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:04:57.244 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:04:57.244 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 523 ms.
17-03-18 04:04:57.254 -07 000000437 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 525 ms.
17-03-18 04:04:57.324 -07 000000012 INF: FPGA: Recv YMVTILE
17-03-18 04:04:57.324 -07 000000487 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 391 ms overall
17-03-18 04:04:57.374 -07 000000487 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:04:57.374 -07 000000561 INF: FPGA: Recv YRDPOS 143079
17-03-18 04:04:57.384 -07 000000487 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 04:04:57.384 -07 000000487 INF: Y Motor: Encoder = 143079 = motor step 111780.5 = 69.8628 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:04:57.384 -07 000000487 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-18 04:04:57.384 -07 000000487 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 391 ms, distance = 0.846 mm, average velocity = 2.164 mm/sec
17-03-18 04:04:58.334 -07 000000487 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:04:58.334 -07 000000012 INF: FPGA: Recv YRDPOS 143079
17-03-18 04:04:58.344 -07 000000487 INF: FPGA: 'YRDPOS' command took 2 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:58.344 -07 000000487 INF: Y Motor: Encoder = 143079 = motor step 111780.5 = 69.8628 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:04:58.374 -07 000000487 INF: Y Motor: After move to 69.872612, error = -0.009819, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:04:58.374 -07 000000487 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:04:58.374 -07 000000487 INF: Y Motor: Moved to 69.8628 after 1450 ms (table move)
17-03-18 04:04:58.374 -07 000000625 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136031 mm (DAC = 29716)
17-03-18 04:04:58.374 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:58.374 -07 000000579 INF: FPGA: Recv ZSGSRD 30471
17-03-18 04:04:58.384 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 04:04:58.384 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:58.384 -07 000000608 INF: FPGA: Recv ZSGSRD 30466
17-03-18 04:04:58.394 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:58.394 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:58.394 -07 000000437 INF: FPGA: Recv ZSGSRD 30468
17-03-18 04:04:58.404 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:58.404 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:58.404 -07 000000480 INF: FPGA: Recv ZSGSRD 30468
17-03-18 04:04:58.414 -07 000000625 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:58.414 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:58.414 -07 000000561 INF: FPGA: Recv ZSGSRD 30465
17-03-18 04:04:58.424 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:58.424 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:58.424 -07 000000501 INF: FPGA: Recv ZSGSRD 30470
17-03-18 04:04:58.434 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:58.434 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:58.434 -07 000000444 INF: FPGA: Recv ZSGSRD 30457
17-03-18 04:04:58.444 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:58.444 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:58.444 -07 000000487 INF: FPGA: Recv ZSGSRD 30461
17-03-18 04:04:58.454 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:58.454 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:58.454 -07 000000437 INF: FPGA: Recv ZSGSRD 30464
17-03-18 04:04:58.464 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:58.464 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:58.464 -07 000000501 INF: FPGA: Recv ZSGSRD 30463
17-03-18 04:04:58.474 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:58.474 -07 000000625 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:04:58.474 -07 000000447 INF: FPGA: Recv ZPIEZORD 26291
17-03-18 04:04:58.484 -07 000000625 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:58.484 -07 000000625 INF: Z Motor: Piezo is near 36.2 V (nominally 0 to 100 V), expect near 45.3 V, since DAC is at 4.534 V. Piezo Error = -9.2 V.
17-03-18 04:04:58.484 -07 000000625 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.0 um, Read 10 ADC samples: Avg = 30465 (-135.2 uncal um), Error = 0.8 uncal um, Median = 30466 (-135.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 30457 (-135.2 uncal um), Max = 30471 (-135.3 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 04:04:58.484 -07 000000625 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30465, posNoise = 6, negNoise = 8
17-03-18 04:04:58.484 -07 000000625 INF: Z Motor: After move to -0.136031, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:04:58.484 -07 000000625 INF: Z Motor: Settle wait time = 1453 ms, measure time = 106 ms (allowed 150 ms), total time = 1559 ms
17-03-18 04:04:58.484 -07 000000625 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-18 04:04:58.534 -07 000000625 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1612 ms
17-03-18 04:04:58.534 -07 000000625 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:04:58.534 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:04:58.534 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:04:58.534 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:04:58.534 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:04:58.534 -07 000000437 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:04:58.534 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:04:58.534 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:04:58.534 -07 000000437 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:04:58.544 -07 000000437 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 04:04:58.544 -07 000000437 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:04:58.544 -07 000000437 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 04:04:58.544 -07 000000437 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-18 04:04:58.554 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:04:58.594 -07 000000625 INF: FPGA: Recv @CAMSNAP turning led on 42
17-03-18 04:04:58.894 -07 000000618 INF: FPGA: Recv @CAMSNAP img rdy 342
17-03-18 04:04:58.894 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 342
17-03-18 04:04:58.894 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:04:58.904 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 596199184, 0x0, 559484976) start.
17-03-18 04:04:58.934 -07 000000561 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:04:58.934 -07 000000480 INF: FPGA: Recv CAMSNAP
17-03-18 04:04:58.934 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 04:04:59.014 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 596199184, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 04:04:59.014 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:04:59.014 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 04:04:59.014 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 04:04:59.034 -07 000000618 INF: Autofocus start
17-03-18 04:04:59.034 -07 000000618 INF: MeasureProfile start
17-03-18 04:04:59.034 -07 000000579 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:04:59.034 -07 000000447 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:04:59.044 -07 000000579 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 04:04:59.044 -07 000000579 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:04:59.044 -07 000000618 INF: MeasureProfile done
17-03-18 04:04:59.044 -07 000000618 INF: X=0  Z correction [um]=-0.02394831
17-03-18 04:04:59.044 -07 000000618 INF: Autofocus finished
17-03-18 04:04:59.244 -07 000000444 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:04:59.244 -07 000000579 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:04:59.244 -07 000000610 INF: ------------ Scan Snapping tile 13 at Y-position 69.86279296875, Z-position -0.136036974909883. ----------
17-03-18 04:04:59.244 -07 000000610 INF: Cycle	120	Tile	13	Exposure Settings		A	414	G	199	T	199	C	414
17-03-18 04:04:59.254 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28223, sync = True, waitForSettling = True)
17-03-18 04:04:59.254 -07 000000610 INF: Z Motor: Moving to -0.129197 mm, started at -0.136037 mm, distance = 6.84 um
17-03-18 04:04:59.254 -07 000000610 INF: FPGA: Xmit ZDACW 28223\n [Z Motor]
17-03-18 04:04:59.254 -07 000000608 INF: FPGA: Recv ZDACW
17-03-18 04:04:59.264 -07 000000610 INF: FPGA: 'ZDACW 28223' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 04:04:59.264 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:04:59.264 -07 000000437 INF: FPGA: Recv ZDACR 28223
17-03-18 04:04:59.274 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:59.274 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:04:59.424 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:59.424 -07 000000618 INF: FPGA: Recv ZSGSRD 29405
17-03-18 04:04:59.434 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:04:59.434 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:59.434 -07 000000579 INF: FPGA: Recv ZSGSRD 29401
17-03-18 04:04:59.444 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:59.444 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:59.444 -07 000000444 INF: FPGA: Recv ZSGSRD 29400
17-03-18 04:04:59.454 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:59.454 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:59.454 -07 000000611 INF: FPGA: Recv ZSGSRD 29404
17-03-18 04:04:59.464 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:59.464 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:59.464 -07 000000501 INF: FPGA: Recv ZSGSRD 29403
17-03-18 04:04:59.474 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:59.474 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:59.474 -07 000000608 INF: FPGA: Recv ZSGSRD 29405
17-03-18 04:04:59.484 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:59.484 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:59.484 -07 000000512 INF: FPGA: Recv ZSGSRD 29397
17-03-18 04:04:59.494 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:59.494 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:59.494 -07 000000590 INF: FPGA: Recv ZSGSRD 29400
17-03-18 04:04:59.504 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:59.504 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:59.504 -07 000000625 INF: FPGA: Recv ZSGSRD 29403
17-03-18 04:04:59.514 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:59.514 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:04:59.514 -07 000000579 INF: FPGA: Recv ZSGSRD 29402
17-03-18 04:04:59.524 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:59.524 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:04:59.524 -07 000000444 INF: FPGA: Recv ZPIEZORD 24855
17-03-18 04:04:59.534 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:04:59.534 -07 000000610 INF: Z Motor: Piezo is near 33.1 V (nominally 0 to 100 V), expect near 43.1 V, since DAC is at 4.307 V. Piezo Error = -10.0 V.
17-03-18 04:04:59.534 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.2 um, Read 10 ADC samples: Avg = 29402 (-128.4 uncal um), Error = 0.8 uncal um, Median = 29402 (-128.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 29397 (-128.4 uncal um), Max = 29405 (-128.5 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 04:04:59.534 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29402, posNoise = 3, negNoise = 5
17-03-18 04:04:59.534 -07 000000610 INF: Z Motor: After move to -0.129197, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:04:59.534 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 04:04:59.534 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:04:59.534 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:04:59.534 -07 000000455 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:04:59.534 -07 000000012 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:04:59.534 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:04:59.534 -07 000000447 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:04:59.534 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:04:59.534 -07 000000579 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:04:59.534 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-18 04:04:59.534 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:04:59.534 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:04:59.534 -07 000000447 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:04:59.544 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 04:04:59.544 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:04:59.544 -07 000000447 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 04:04:59.544 -07 000000447 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:04:59.544 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 04:04:59.544 -07 000000012 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 04:04:59.554 -07 000000447 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 04:04:59.554 -07 000000447 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 04:04:59.554 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 414 414 199 199 28400 150\n [Camera]
17-03-18 04:04:59.754 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:05:00.164 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 606
17-03-18 04:05:00.164 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 606
17-03-18 04:05:00.164 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:05:00.164 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 606
17-03-18 04:05:00.164 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 606
17-03-18 04:05:00.174 -07 000000487 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:05:00.174 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:05:00.174 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-18 04:05:00.174 -07 000000487 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:05:00.174 -07 000000487 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) start.
17-03-18 04:05:00.354 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28400 799
17-03-18 04:05:00.504 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP turning grn on 949
17-03-18 04:05:00.564 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 395 ms.
17-03-18 04:05:00.564 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 04:05:00.564 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:05:00.564 -07 000000487 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) end. Duration was 393 ms.
17-03-18 04:05:00.564 -07 000000487 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-18 04:05:00.564 -07 000000487 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:05:00.574 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:05:00.574 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 04:05:00.574 -07 000000487 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:05:00.574 -07 000000487 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-18 04:05:00.704 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1148
17-03-18 04:05:00.704 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1148
17-03-18 04:05:00.704 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:05:00.714 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1148
17-03-18 04:05:00.714 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1148
17-03-18 04:05:00.714 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:05:00.714 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:05:00.714 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) start.
17-03-18 04:05:00.714 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:05:00.714 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-18 04:05:00.894 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP 1341
17-03-18 04:05:00.904 -07 000000444 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:05:00.904 -07 000000610 INF: FPGA: 'CAMDBLSNAP 414 414 199 199 28400 150' command took 2 ms to send, 1340 ms to get response, and 1348 ms overall
17-03-18 04:05:00.904 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 04:05:00.904 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 14 at Y-position 69.86279296875, Z-Position -0.129208037403191. ------
17-03-18 04:05:00.904 -07 000000611 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:05:00.904 -07 000000012 INF: Y Motor: MoveYZ optimized starting. Moving Y to 70.7026 mm, moving Z to -0.13570 mm
17-03-18 04:05:00.904 -07 000000012 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:05:00.904 -07 000000608 INF: Y Motor: Entering MoveAbsStepped (target = 113124 steps, sync = True, waitForSettling = True)
17-03-18 04:05:00.904 -07 000000608 INF: Y Motor: Moving to 70.7026 mm, started at 69.8628 mm, delta = 0.8398 mm
17-03-18 04:05:00.904 -07 000000625 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:05:00.904 -07 000000512 INF: Z Motor: Entering MoveAbsStepped (DAC = 29644, sync = True, waitForSettling = False)
17-03-18 04:05:00.904 -07 000000512 INF: Z Motor: Moving to -0.135702 mm, started at -0.129208 mm, distance = -6.49 um
17-03-18 04:05:00.914 -07 000000611 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 04:05:00.914 -07 000000512 INF: FPGA: Xmit ZDACW 29644\n [Z Motor]
17-03-18 04:05:00.914 -07 000000487 INF: FPGA: Recv ZDACW
17-03-18 04:05:00.924 -07 000000512 INF: FPGA: 'ZDACW 29644' command took 3 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:05:00.924 -07 000000512 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:05:00.924 -07 000000618 INF: FPGA: Recv ZDACR 29644
17-03-18 04:05:00.934 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:05:00.934 -07 000000512 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:05:00.934 -07 000000512 INF: Z Motor: MoveAbsStepped took 21 ms (did NOT wait for settling yet))
17-03-18 04:05:00.934 -07 000000501 INF: FPGA: Recv YRDPOS 143079
17-03-18 04:05:00.944 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 32 ms overall
17-03-18 04:05:00.944 -07 000000608 INF: Y Motor: Encoder = 143079 = motor step 111780.5 = 69.8628 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:05:00.944 -07 000000608 INF: Y Motor: Last commanded position = 69.8726 mm (111796.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:05:00.944 -07 000000608 INF: Y Motor: Moving 1344 steps-20
17-03-18 04:05:00.944 -07 000000611 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:05:00.954 -07 000000608 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:05:01.104 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 384 ms.
17-03-18 04:05:01.104 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-18 04:05:01.104 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:05:01.104 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:05:01.104 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) end. Duration was 391 ms.
17-03-18 04:05:01.104 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-18 04:05:01.104 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:05:01.114 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:05:01.114 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 04:05:01.114 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 04:05:01.144 -07 000000590 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:05:01.144 -07 000000611 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 193 ms to get response, and 230 ms overall
17-03-18 04:05:01.324 -07 000000579 INF: FPGA: Recv YMVTILE
17-03-18 04:05:01.324 -07 000000608 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-18 04:05:01.374 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:05:01.384 -07 000000611 INF: FPGA: Recv YRDPOS 144769
17-03-18 04:05:01.384 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 04:05:01.384 -07 000000608 INF: Y Motor: Encoder = 144769 = motor step 113100.8 = 70.6880 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:05:01.384 -07 000000608 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-18 04:05:01.384 -07 000000608 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.840 mm, average velocity = 2.164 mm/sec
17-03-18 04:05:01.634 -07 000000501 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:05:01.634 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 119. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1710, R2=1777, Total=3487. Warn if over 250 bubbles per interval.
17-03-18 04:05:02.224 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 120, FrontChillerTemperature: 3.956714,
17-03-18 04:05:02.334 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:05:02.334 -07 000000455 INF: FPGA: Recv YRDPOS 144769
17-03-18 04:05:02.344 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:05:02.344 -07 000000608 INF: Y Motor: Encoder = 144769 = motor step 113100.8 = 70.6880 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:05:02.374 -07 000000608 INF: Y Motor: After move to 70.702606, error = -0.014618, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:05:02.374 -07 000000608 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:05:02.374 -07 000000608 INF: Y Motor: Moved to 70.6880 after 1464 ms (table move)
17-03-18 04:05:02.374 -07 000000012 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135702 mm (DAC = 29644)
17-03-18 04:05:02.374 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:05:02.374 -07 000000590 INF: FPGA: Recv ZSGSRD 30418
17-03-18 04:05:02.384 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 04:05:02.384 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:05:02.384 -07 000000487 INF: FPGA: Recv ZSGSRD 30423
17-03-18 04:05:02.394 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:05:02.394 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:05:02.394 -07 000000512 INF: FPGA: Recv ZSGSRD 30417
17-03-18 04:05:02.404 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:05:02.404 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:05:02.404 -07 000000611 INF: FPGA: Recv ZSGSRD 30412
17-03-18 04:05:02.414 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:05:02.414 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:05:02.414 -07 000000480 INF: FPGA: Recv ZSGSRD 30421
17-03-18 04:05:02.424 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:05:02.424 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:05:02.424 -07 000000579 INF: FPGA: Recv ZSGSRD 30412
17-03-18 04:05:02.434 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:05:02.434 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:05:02.434 -07 000000512 INF: FPGA: Recv ZSGSRD 30410
17-03-18 04:05:02.444 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:05:02.444 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:05:02.444 -07 000000611 INF: FPGA: Recv ZSGSRD 30412
17-03-18 04:05:02.454 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:05:02.454 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:05:02.454 -07 000000455 INF: FPGA: Recv ZSGSRD 30413
17-03-18 04:05:02.464 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:05:02.464 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:05:02.464 -07 000000625 INF: FPGA: Recv ZSGSRD 30426
17-03-18 04:05:02.474 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:05:02.474 -07 000000012 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:05:02.474 -07 000000501 INF: FPGA: Recv ZPIEZORD 26216
17-03-18 04:05:02.484 -07 000000012 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:05:02.484 -07 000000012 INF: Z Motor: Piezo is near 36.0 V (nominally 0 to 100 V), expect near 45.2 V, since DAC is at 4.523 V. Piezo Error = -9.2 V.
17-03-18 04:05:02.484 -07 000000012 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.7 um, Read 10 ADC samples: Avg = 30416 (-134.9 uncal um), Error = 0.8 uncal um, Median = 30415 (-134.9 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 30410 (-134.9 uncal um), Max = 30426 (-135.0 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 04:05:02.484 -07 000000012 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30416, posNoise = 10, negNoise = 6
17-03-18 04:05:02.484 -07 000000012 INF: Z Motor: After move to -0.135702, error = -0.000021, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:05:02.484 -07 000000012 INF: Z Motor: Settle wait time = 1466 ms, measure time = 105 ms (allowed 150 ms), total time = 1571 ms
17-03-18 04:05:02.484 -07 000000012 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 04:05:02.534 -07 000000012 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1625 ms
17-03-18 04:05:02.534 -07 000000012 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:05:02.534 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:05:02.534 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:05:02.534 -07 000000487 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:05:02.534 -07 000000579 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:05:02.534 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:05:02.534 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:05:02.534 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 3 ms.
17-03-18 04:05:02.534 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:05:02.544 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 04:05:02.544 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:05:02.554 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-18 04:05:02.554 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 19 ms.
17-03-18 04:05:02.554 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:05:02.604 -07 000000590 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:05:02.904 -07 000000501 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:05:02.904 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:05:02.904 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:05:02.904 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 615280568, 0x0, 559484976) start.
17-03-18 04:05:02.944 -07 000000444 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:05:02.944 -07 000000487 INF: FPGA: Recv CAMSNAP
17-03-18 04:05:02.944 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 382 ms to get response, and 384 ms overall
17-03-18 04:05:03.024 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 615280568, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 04:05:03.024 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:05:03.024 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 04:05:03.024 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-18 04:05:03.044 -07 000000447 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:05:03.044 -07 000000618 INF: Autofocus start
17-03-18 04:05:03.044 -07 000000618 INF: MeasureProfile start
17-03-18 04:05:03.044 -07 000000611 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:05:03.054 -07 000000447 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 04:05:03.054 -07 000000447 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:05:03.054 -07 000000618 INF: MeasureProfile done
17-03-18 04:05:03.054 -07 000000618 INF: X=-16  Z correction [um]=-0.08128808
17-03-18 04:05:03.054 -07 000000618 INF: Autofocus finished
17-03-18 04:05:03.254 -07 000000455 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:05:03.254 -07 000000447 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:05:03.264 -07 000000610 INF: ------------ Scan Snapping tile 14 at Y-position 70.68798828125, Z-position -0.135722188514936. ----------
17-03-18 04:05:03.264 -07 000000610 INF: Cycle	120	Tile	14	Exposure Settings		A	414	G	199	T	199	C	414
17-03-18 04:05:03.264 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28139, sync = True, waitForSettling = True)
17-03-18 04:05:03.264 -07 000000610 INF: Z Motor: Moving to -0.128812 mm, started at -0.135722 mm, distance = 6.91 um
17-03-18 04:05:03.264 -07 000000610 INF: FPGA: Xmit ZDACW 28139\n [Z Motor]
17-03-18 04:05:03.274 -07 000000625 INF: FPGA: Recv ZDACW
17-03-18 04:05:03.274 -07 000000610 INF: FPGA: 'ZDACW 28139' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 04:05:03.274 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:05:03.274 -07 000000618 INF: FPGA: Recv ZDACR 28139
17-03-18 04:05:03.284 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:05:03.284 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:05:03.434 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:05:03.434 -07 000000579 INF: FPGA: Recv ZSGSRD 29343
17-03-18 04:05:03.444 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:05:03.444 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:05:03.444 -07 000000444 INF: FPGA: Recv ZSGSRD 29339
17-03-18 04:05:03.454 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:05:03.454 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:05:03.454 -07 000000487 INF: FPGA: Recv ZSGSRD 29345
17-03-18 04:05:03.464 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:05:03.464 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:05:03.464 -07 000000455 INF: FPGA: Recv ZSGSRD 29336
17-03-18 04:05:03.474 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:05:03.474 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:05:03.474 -07 000000561 INF: FPGA: Recv ZSGSRD 29340
17-03-18 04:05:03.484 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:05:03.484 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:05:03.484 -07 000000480 INF: FPGA: Recv ZSGSRD 29342
17-03-18 04:05:03.494 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:05:03.494 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:05:03.494 -07 000000487 INF: FPGA: Recv ZSGSRD 29340
17-03-18 04:05:03.504 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:05:03.504 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:05:03.504 -07 000000437 INF: FPGA: Recv ZSGSRD 29343
17-03-18 04:05:03.514 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:05:03.514 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:05:03.514 -07 000000618 INF: FPGA: Recv ZSGSRD 29338
17-03-18 04:05:03.524 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:05:03.524 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:05:03.524 -07 000000012 INF: FPGA: Recv ZSGSRD 29340
17-03-18 04:05:03.534 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:05:03.534 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:05:03.534 -07 000000611 INF: FPGA: Recv ZPIEZORD 24786
17-03-18 04:05:03.544 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:05:03.544 -07 000000610 INF: Z Motor: Piezo is near 32.9 V (nominally 0 to 100 V), expect near 42.9 V, since DAC is at 4.294 V. Piezo Error = -10.0 V.
17-03-18 04:05:03.544 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.8 um, Read 10 ADC samples: Avg = 29341 (-128.0 uncal um), Error = 0.8 uncal um, Median = 29340 (-128.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29336 (-128.0 uncal um), Max = 29345 (-128.1 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 04:05:03.544 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29341, posNoise = 4, negNoise = 5
17-03-18 04:05:03.544 -07 000000610 INF: Z Motor: After move to -0.128812, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:05:03.544 -07 000000610 INF: Z Motor: MoveAbsStepped took 273 ms)
17-03-18 04:05:03.544 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:05:03.544 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:05:03.544 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:05:03.544 -07 000000012 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:05:03.544 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:05:03.544 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:05:03.544 -07 000000447 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:05:03.544 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:05:03.544 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:05:03.544 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:05:03.544 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:05:03.544 -07 000000447 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:05:03.554 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 04:05:03.554 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:05:03.554 -07 000000447 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 04:05:03.554 -07 000000447 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:05:03.564 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 04:05:03.564 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 04:05:03.564 -07 000000447 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 04:05:03.564 -07 000000447 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 04:05:03.564 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 414 414 199 199 28315 150\n [Camera]
17-03-18 04:05:03.764 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:05:04.174 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 606
17-03-18 04:05:04.174 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 606
17-03-18 04:05:04.174 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:05:04.184 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 606
17-03-18 04:05:04.184 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 606
17-03-18 04:05:04.184 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:05:04.184 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:05:04.184 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 04:05:04.184 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:05:04.184 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 2602438304, 0x0, 391868352) start.
17-03-18 04:05:04.374 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28315 799
17-03-18 04:05:04.524 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP turning grn on 950
17-03-18 04:05:04.554 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 2602438304, 0x0, 391868352) end. Duration was 371 ms.
17-03-18 04:05:04.554 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 372 ms.
17-03-18 04:05:04.554 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:05:04.554 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 373 ms.
17-03-18 04:05:04.554 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-18 04:05:04.554 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:05:04.564 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:05:04.564 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-18 04:05:04.564 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:05:04.574 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-18 04:05:04.724 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1150
17-03-18 04:05:04.724 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1150
17-03-18 04:05:04.724 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:05:04.724 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1150
17-03-18 04:05:04.724 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1150
17-03-18 04:05:04.724 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:05:04.724 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 04:05:04.724 -07 000000487 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:05:04.724 -07 000000487 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:05:04.724 -07 000000487 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start.
17-03-18 04:05:04.914 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP 1340
17-03-18 04:05:04.914 -07 000000611 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:05:04.914 -07 000000610 INF: FPGA: 'CAMDBLSNAP 414 414 199 199 28315 150' command took 2 ms to send, 1342 ms to get response, and 1348 ms overall
17-03-18 04:05:04.914 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 04:05:04.914 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 15 at Y-position 70.68798828125, Z-Position -0.128816160462543. ------
17-03-18 04:05:04.914 -07 000000625 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:05:04.914 -07 000000618 INF: Y Motor: MoveYZ optimized starting. Moving Y to 71.5326 mm, moving Z to -0.13542 mm
17-03-18 04:05:04.914 -07 000000618 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:05:04.924 -07 000000455 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:05:04.924 -07 000000625 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 04:05:04.924 -07 000000625 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:05:04.924 -07 000000501 INF: Y Motor: Entering MoveAbsStepped (target = 114452 steps, sync = True, waitForSettling = True)
17-03-18 04:05:04.924 -07 000000501 INF: Y Motor: Moving to 71.5326 mm, started at 70.6880 mm, delta = 0.8446 mm
17-03-18 04:05:04.924 -07 000000437 INF: Z Motor: Entering MoveAbsStepped (DAC = 29582, sync = True, waitForSettling = False)
17-03-18 04:05:04.924 -07 000000437 INF: Z Motor: Moving to -0.135418 mm, started at -0.128816 mm, distance = -6.60 um
17-03-18 04:05:04.934 -07 000000437 INF: FPGA: Xmit ZDACW 29582\n [Z Motor]
17-03-18 04:05:04.934 -07 000000455 INF: FPGA: Recv ZDACW
17-03-18 04:05:04.944 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:05:04.944 -07 000000437 INF: FPGA: 'ZDACW 29582' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-18 04:05:04.944 -07 000000455 INF: FPGA: Recv YRDPOS 144769
17-03-18 04:05:04.954 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-18 04:05:04.954 -07 000000501 INF: Y Motor: Encoder = 144769 = motor step 113100.8 = 70.6880 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:05:04.954 -07 000000501 INF: Y Motor: Last commanded position = 70.7026 mm (113124.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:05:04.954 -07 000000501 INF: Y Motor: Moving 1351 steps-30
17-03-18 04:05:04.954 -07 000000437 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:05:04.954 -07 000000590 INF: FPGA: Recv ZDACR 29582
17-03-18 04:05:04.964 -07 000000437 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 04:05:04.964 -07 000000437 INF: Z Motor: MoveAbsStepped took 36 ms (did NOT wait for settling yet))
17-03-18 04:05:04.964 -07 000000501 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:05:05.114 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 393 ms.
17-03-18 04:05:05.114 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-18 04:05:05.114 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:05:05.114 -07 000000487 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 393 ms.
17-03-18 04:05:05.114 -07 000000487 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-18 04:05:05.114 -07 000000487 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:05:05.124 -07 000000590 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:05:05.124 -07 000000625 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 194 ms to get response, and 203 ms overall
17-03-18 04:05:05.124 -07 000000487 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 04:05:05.124 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 04:05:05.124 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 04:05:05.134 -07 000000487 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 405 ms.
17-03-18 04:05:05.334 -07 000000455 INF: FPGA: Recv YMVTILE
17-03-18 04:05:05.334 -07 000000501 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-18 04:05:05.384 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:05:05.394 -07 000000487 INF: FPGA: Recv YRDPOS 146469
17-03-18 04:05:05.394 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 04:05:05.394 -07 000000501 INF: Y Motor: Encoder = 146469 = motor step 114428.9 = 71.5181 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:05:05.394 -07 000000501 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-18 04:05:05.394 -07 000000501 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.845 mm, average velocity = 2.177 mm/sec
17-03-18 04:05:06.344 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:05:06.344 -07 000000625 INF: FPGA: Recv YRDPOS 146470
17-03-18 04:05:06.354 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:05:06.354 -07 000000501 INF: Y Motor: Encoder = 146470 = motor step 114429.7 = 71.5186 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:05:06.384 -07 000000501 INF: Y Motor: After move to 71.532608, error = -0.014053, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:05:06.384 -07 000000501 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 04:05:06.384 -07 000000501 INF: Y Motor: Moved to 71.5186 after 1457 ms (table move)
17-03-18 04:05:06.384 -07 000000618 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135418 mm (DAC = 29582)
17-03-18 04:05:06.384 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:05:06.384 -07 000000512 INF: FPGA: Recv ZSGSRD 30372
17-03-18 04:05:06.394 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 04:05:06.394 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:05:06.394 -07 000000455 INF: FPGA: Recv ZSGSRD 30370
17-03-18 04:05:06.404 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:05:06.404 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:05:06.404 -07 000000480 INF: FPGA: Recv ZSGSRD 30367
17-03-18 04:05:06.414 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:05:06.414 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:05:06.414 -07 000000561 INF: FPGA: Recv ZSGSRD 30374
17-03-18 04:05:06.424 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:05:06.424 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:05:06.424 -07 000000512 INF: FPGA: Recv ZSGSRD 30367
17-03-18 04:05:06.434 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:05:06.434 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:05:06.434 -07 000000444 INF: FPGA: Recv ZSGSRD 30372
17-03-18 04:05:06.444 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:05:06.444 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:05:06.444 -07 000000444 INF: FPGA: Recv ZSGSRD 30377
17-03-18 04:05:06.454 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:05:06.454 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:05:06.454 -07 000000608 INF: FPGA: Recv ZSGSRD 30370
17-03-18 04:05:06.464 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 04:05:06.464 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:05:06.464 -07 000000512 INF: FPGA: Recv ZSGSRD 30372
17-03-18 04:05:06.474 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:05:06.474 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:05:06.474 -07 000000447 INF: FPGA: Recv ZSGSRD 30366
17-03-18 04:05:06.484 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:05:06.484 -07 000000618 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:05:06.484 -07 000000444 INF: FPGA: Recv ZPIEZORD 26124
17-03-18 04:05:06.494 -07 000000618 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:05:06.494 -07 000000618 INF: Z Motor: Piezo is near 35.8 V (nominally 0 to 100 V), expect near 45.1 V, since DAC is at 4.514 V. Piezo Error = -9.3 V.
17-03-18 04:05:06.494 -07 000000618 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.4 um, Read 10 ADC samples: Avg = 30371 (-134.6 uncal um), Error = 0.8 uncal um, Median = 30371 (-134.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 30366 (-134.6 uncal um), Max = 30377 (-134.7 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 04:05:06.494 -07 000000618 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30371, posNoise = 6, negNoise = 5
17-03-18 04:05:06.494 -07 000000618 INF: Z Motor: After move to -0.135418, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:05:06.494 -07 000000618 INF: Z Motor: Settle wait time = 1460 ms, measure time = 106 ms (allowed 150 ms), total time = 1566 ms
17-03-18 04:05:06.494 -07 000000618 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-18 04:05:06.544 -07 000000618 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1622 ms
17-03-18 04:05:06.544 -07 000000618 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:05:06.544 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:05:06.544 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:05:06.544 -07 000000447 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:05:06.544 -07 000000590 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:05:06.554 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:05:06.554 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:05:06.554 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 04:05:06.554 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:05:06.554 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 04:05:06.554 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:05:06.564 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 8 ms.
17-03-18 04:05:06.564 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-18 04:05:06.564 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:05:06.614 -07 000000480 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:05:06.634 -07 000000455 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:05:06.634 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 119. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1710, R2=1777, Total=3487. Warn if over 250 bubbles per interval.
17-03-18 04:05:06.914 -07 000000625 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:05:06.914 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:05:06.914 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:05:06.914 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2356955352, 0x0, 559484976) start.
17-03-18 04:05:06.944 -07 000000561 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:05:06.954 -07 000000611 INF: FPGA: Recv CAMSNAP
17-03-18 04:05:06.954 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 380 ms to get response, and 384 ms overall
17-03-18 04:05:07.024 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2356955352, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 04:05:07.024 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:05:07.034 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 04:05:07.034 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 04:05:07.054 -07 000000579 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:05:07.054 -07 000000512 INF: Autofocus start
17-03-18 04:05:07.054 -07 000000512 INF: MeasureProfile start
17-03-18 04:05:07.054 -07 000000480 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:05:07.064 -07 000000579 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 04:05:07.064 -07 000000579 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:05:07.064 -07 000000512 INF: MeasureProfile done
17-03-18 04:05:07.074 -07 000000512 INF: X=16  Z correction [um]=0.0530179
17-03-18 04:05:07.074 -07 000000512 INF: Autofocus finished
17-03-18 04:05:07.264 -07 000000512 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:05:07.264 -07 000000579 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 198 ms to get response, and 208 ms overall
17-03-18 04:05:07.274 -07 000000610 INF: ------------ Scan Snapping tile 15 at Y-position 71.5185546875, Z-position -0.135433098968557. ----------
17-03-18 04:05:07.274 -07 000000610 INF: Cycle	120	Tile	15	Exposure Settings		A	414	G	199	T	199	C	414
17-03-18 04:05:07.274 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28107, sync = True, waitForSettling = True)
17-03-18 04:05:07.274 -07 000000610 INF: Z Motor: Moving to -0.128666 mm, started at -0.135433 mm, distance = 6.77 um
17-03-18 04:05:07.274 -07 000000610 INF: FPGA: Xmit ZDACW 28107\n [Z Motor]
17-03-18 04:05:07.284 -07 000000480 INF: FPGA: Recv ZDACW
17-03-18 04:05:07.284 -07 000000610 INF: FPGA: 'ZDACW 28107' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 04:05:07.284 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:05:07.284 -07 000000561 INF: FPGA: Recv ZDACR 28107
17-03-18 04:05:07.294 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:05:07.294 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:05:07.444 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:05:07.444 -07 000000501 INF: FPGA: Recv ZSGSRD 29322
17-03-18 04:05:07.454 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:05:07.454 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:05:07.454 -07 000000590 INF: FPGA: Recv ZSGSRD 29318
17-03-18 04:05:07.464 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:05:07.464 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:05:07.464 -07 000000480 INF: FPGA: Recv ZSGSRD 29321
17-03-18 04:05:07.474 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:05:07.474 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:05:07.474 -07 000000618 INF: FPGA: Recv ZSGSRD 29316
17-03-18 04:05:07.484 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:05:07.484 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:05:07.484 -07 000000437 INF: FPGA: Recv ZSGSRD 29319
17-03-18 04:05:07.494 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:05:07.494 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:05:07.494 -07 000000012 INF: FPGA: Recv ZSGSRD 29321
17-03-18 04:05:07.504 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:05:07.504 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:05:07.504 -07 000000561 INF: FPGA: Recv ZSGSRD 29311
17-03-18 04:05:07.514 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:05:07.514 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:05:07.514 -07 000000608 INF: FPGA: Recv ZSGSRD 29324
17-03-18 04:05:07.524 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:05:07.524 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:05:07.524 -07 000000487 INF: FPGA: Recv ZSGSRD 29316
17-03-18 04:05:07.534 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:05:07.534 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:05:07.534 -07 000000512 INF: FPGA: Recv ZSGSRD 29321
17-03-18 04:05:07.544 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:05:07.544 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:05:07.544 -07 000000444 INF: FPGA: Recv ZPIEZORD 24757
17-03-18 04:05:07.554 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:05:07.554 -07 000000610 INF: Z Motor: Piezo is near 32.9 V (nominally 0 to 100 V), expect near 42.9 V, since DAC is at 4.289 V. Piezo Error = -10.0 V.
17-03-18 04:05:07.554 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.7 um, Read 10 ADC samples: Avg = 29319 (-127.9 uncal um), Error = 0.8 uncal um, Median = 29320 (-127.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 29311 (-127.8 uncal um), Max = 29324 (-127.9 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 04:05:07.554 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29319, posNoise = 5, negNoise = 8
17-03-18 04:05:07.554 -07 000000610 INF: Z Motor: After move to -0.128666, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:05:07.554 -07 000000610 INF: Z Motor: MoveAbsStepped took 273 ms)
17-03-18 04:05:07.554 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:05:07.554 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:05:07.554 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:05:07.554 -07 000000579 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:05:07.554 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:05:07.554 -07 000000625 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:05:07.554 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:05:07.554 -07 000000447 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:05:07.554 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:05:07.554 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:05:07.554 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:05:07.554 -07 000000625 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:05:07.564 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 04:05:07.564 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:05:07.564 -07 000000625 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-18 04:05:07.564 -07 000000625 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:05:07.574 -07 000000625 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 04:05:07.574 -07 000000625 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 04:05:07.574 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-18 04:05:07.574 -07 000000579 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 04:05:07.584 -07 000000012 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 120, FrontChillerTemperature: 4.004458,
17-03-18 04:05:07.594 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 414 414 199 199 28283 150\n [Camera]
17-03-18 04:05:07.784 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:05:08.204 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 606
17-03-18 04:05:08.204 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 606
17-03-18 04:05:08.204 -07 000000611 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:05:08.204 -07 000000611 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:05:08.204 -07 000000611 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) start.
17-03-18 04:05:08.204 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 606
17-03-18 04:05:08.204 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 606
17-03-18 04:05:08.204 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:05:08.204 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:05:08.204 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 04:05:08.394 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28283 799
17-03-18 04:05:08.544 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP turning grn on 949
17-03-18 04:05:08.604 -07 000000611 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) end. Duration was 399 ms.
17-03-18 04:05:08.604 -07 000000611 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 04:05:08.604 -07 000000611 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:05:08.604 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 398 ms.
17-03-18 04:05:08.604 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 04:05:08.604 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:05:08.614 -07 000000611 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:05:08.614 -07 000000611 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-18 04:05:08.614 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:05:08.614 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-18 04:05:08.744 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1148
17-03-18 04:05:08.744 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1148
17-03-18 04:05:08.744 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:05:08.744 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:05:08.744 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-18 04:05:08.744 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1148
17-03-18 04:05:08.744 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1148
17-03-18 04:05:08.744 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:05:08.744 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:05:08.744 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-18 04:05:08.934 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP 1341
17-03-18 04:05:08.934 -07 000000487 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:05:08.934 -07 000000610 INF: FPGA: 'CAMDBLSNAP 414 414 199 199 28283 150' command took 2 ms to send, 1338 ms to get response, and 1362 ms overall
17-03-18 04:05:08.944 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 04:05:08.944 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 16 at Y-position 71.5185546875, Z-Position -0.128674827795425. ------
17-03-18 04:05:08.944 -07 000000579 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:05:08.944 -07 000000608 INF: Y Motor: MoveYZ optimized starting. Moving Y to 72.3626 mm, moving Z to -0.13503 mm
17-03-18 04:05:08.944 -07 000000608 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:05:08.944 -07 000000487 INF: Z Motor: Entering MoveAbsStepped (DAC = 29498, sync = True, waitForSettling = False)
17-03-18 04:05:08.944 -07 000000487 INF: Z Motor: Moving to -0.135033 mm, started at -0.128675 mm, distance = -6.36 um
17-03-18 04:05:08.944 -07 000000625 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:05:08.944 -07 000000501 INF: Y Motor: Entering MoveAbsStepped (target = 115780 steps, sync = True, waitForSettling = True)
17-03-18 04:05:08.944 -07 000000501 INF: Y Motor: Moving to 72.3626 mm, started at 71.5186 mm, delta = 0.8441 mm
17-03-18 04:05:08.954 -07 000000579 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 04:05:08.954 -07 000000487 INF: FPGA: Xmit ZDACW 29498\n [Z Motor]
17-03-18 04:05:08.954 -07 000000512 INF: FPGA: Recv ZDACW
17-03-18 04:05:08.964 -07 000000487 INF: FPGA: 'ZDACW 29498' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-18 04:05:08.964 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:05:08.964 -07 000000512 INF: FPGA: Recv YRDPOS 146470
17-03-18 04:05:08.974 -07 000000579 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:05:08.974 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 20 ms overall
17-03-18 04:05:08.974 -07 000000501 INF: Y Motor: Encoder = 146470 = motor step 114429.7 = 71.5186 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:05:08.974 -07 000000501 INF: Y Motor: Last commanded position = 71.5326 mm (114452.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:05:08.974 -07 000000501 INF: Y Motor: Moving 1350 steps-30
17-03-18 04:05:08.984 -07 000000487 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:05:08.984 -07 000000437 INF: FPGA: Recv ZDACR 29498
17-03-18 04:05:08.994 -07 000000487 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 04:05:08.994 -07 000000487 INF: Z Motor: MoveAbsStepped took 41 ms (did NOT wait for settling yet))
17-03-18 04:05:08.994 -07 000000501 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:05:09.154 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 402 ms.
17-03-18 04:05:09.154 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 04:05:09.154 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:05:09.154 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 401 ms.
17-03-18 04:05:09.154 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 04:05:09.154 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:05:09.154 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:05:09.154 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 04:05:09.154 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 410 ms.
17-03-18 04:05:09.164 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-18 04:05:09.174 -07 000000480 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:05:09.174 -07 000000579 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 04:05:09.364 -07 000000590 INF: FPGA: Recv YMVTILE
17-03-18 04:05:09.364 -07 000000501 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 04:05:09.414 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:05:09.424 -07 000000625 INF: FPGA: Recv YRDPOS 148171
17-03-18 04:05:09.424 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 5 ms overall
17-03-18 04:05:09.424 -07 000000501 INF: Y Motor: Encoder = 148171 = motor step 115758.6 = 72.3491 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:05:09.424 -07 000000501 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-18 04:05:09.424 -07 000000501 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.844 mm, average velocity = 2.126 mm/sec
17-03-18 04:05:10.374 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:05:10.374 -07 000000437 INF: FPGA: Recv YRDPOS 148171
17-03-18 04:05:10.384 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:05:10.384 -07 000000501 INF: Y Motor: Encoder = 148171 = motor step 115758.6 = 72.3491 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:05:10.414 -07 000000501 INF: Y Motor: After move to 72.362610, error = -0.013489, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:05:10.414 -07 000000501 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:05:10.414 -07 000000501 INF: Y Motor: Moved to 72.3491 after 1462 ms (table move)
17-03-18 04:05:10.414 -07 000000608 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135033 mm (DAC = 29498)
17-03-18 04:05:10.414 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:05:10.424 -07 000000012 INF: FPGA: Recv ZSGSRD 30313
17-03-18 04:05:10.424 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 6 ms overall
17-03-18 04:05:10.424 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:05:10.424 -07 000000561 INF: FPGA: Recv ZSGSRD 30305
17-03-18 04:05:10.434 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 04:05:10.434 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:05:10.434 -07 000000501 INF: FPGA: Recv ZSGSRD 30312
17-03-18 04:05:10.444 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:05:10.444 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:05:10.444 -07 000000512 INF: FPGA: Recv ZSGSRD 30311
17-03-18 04:05:10.454 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:05:10.454 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:05:10.454 -07 000000579 INF: FPGA: Recv ZSGSRD 30306
17-03-18 04:05:10.464 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:05:10.464 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:05:10.464 -07 000000487 INF: FPGA: Recv ZSGSRD 30312
17-03-18 04:05:10.474 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:05:10.474 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:05:10.474 -07 000000501 INF: FPGA: Recv ZSGSRD 30306
17-03-18 04:05:10.484 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:05:10.484 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:05:10.484 -07 000000590 INF: FPGA: Recv ZSGSRD 30312
17-03-18 04:05:10.494 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:05:10.494 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:05:10.494 -07 000000480 INF: FPGA: Recv ZSGSRD 30309
17-03-18 04:05:10.504 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:05:10.504 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:05:10.504 -07 000000561 INF: FPGA: Recv ZSGSRD 30309
17-03-18 04:05:10.514 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:05:10.514 -07 000000608 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:05:10.514 -07 000000455 INF: FPGA: Recv ZPIEZORD 26065
17-03-18 04:05:10.524 -07 000000608 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:05:10.524 -07 000000608 INF: Z Motor: Piezo is near 35.7 V (nominally 0 to 100 V), expect near 45.0 V, since DAC is at 4.501 V. Piezo Error = -9.3 V.
17-03-18 04:05:10.524 -07 000000608 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.0 um, Read 10 ADC samples: Avg = 30310 (-134.3 uncal um), Error = 0.8 uncal um, Median = 30310 (-134.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 30305 (-134.2 uncal um), Max = 30313 (-134.3 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 04:05:10.524 -07 000000608 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30310, posNoise = 3, negNoise = 5
17-03-18 04:05:10.524 -07 000000608 INF: Z Motor: After move to -0.135033, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:05:10.524 -07 000000608 INF: Z Motor: Settle wait time = 1466 ms, measure time = 106 ms (allowed 150 ms), total time = 1572 ms
17-03-18 04:05:10.524 -07 000000608 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-18 04:05:10.574 -07 000000608 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1624 ms
17-03-18 04:05:10.574 -07 000000608 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:05:10.574 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:05:10.574 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:05:10.574 -07 000000590 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:05:10.574 -07 000000579 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:05:10.574 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:05:10.574 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:05:10.574 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:05:10.574 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:05:10.584 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 04:05:10.584 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:05:10.594 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-18 04:05:10.594 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-18 04:05:10.594 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:05:10.644 -07 000000437 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:05:10.944 -07 000000590 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:05:10.944 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:05:10.944 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:05:10.944 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2404012176, 0x0, 559484976) start.
17-03-18 04:05:10.984 -07 000000625 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:05:10.984 -07 000000590 INF: FPGA: Recv CAMSNAP
17-03-18 04:05:10.984 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 382 ms to get response, and 386 ms overall
17-03-18 04:05:11.064 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2404012176, 0x0, 559484976) end. Duration was 118 ms.
17-03-18 04:05:11.064 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:05:11.064 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 04:05:11.064 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 122 ms.
17-03-18 04:05:11.084 -07 000000561 INF: Autofocus start
17-03-18 04:05:11.084 -07 000000561 INF: MeasureProfile start
17-03-18 04:05:11.084 -07 000000437 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:05:11.084 -07 000000512 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:05:11.094 -07 000000437 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:05:11.094 -07 000000437 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:05:11.094 -07 000000561 INF: MeasureProfile done
17-03-18 04:05:11.094 -07 000000561 INF: X=-16  Z correction [um]=-0.08128808
17-03-18 04:05:11.094 -07 000000561 INF: Autofocus finished
17-03-18 04:05:11.294 -07 000000625 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:05:11.294 -07 000000437 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:05:11.294 -07 000000610 INF: ------------ Scan Snapping tile 16 at Y-position 72.34912109375, Z-position -0.13504122202791. ----------
17-03-18 04:05:11.304 -07 000000610 INF: Cycle	120	Tile	16	Exposure Settings		A	414	G	199	T	199	C	414
17-03-18 04:05:11.304 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27993, sync = True, waitForSettling = True)
17-03-18 04:05:11.304 -07 000000610 INF: Z Motor: Moving to -0.128144 mm, started at -0.135041 mm, distance = 6.90 um
17-03-18 04:05:11.304 -07 000000610 INF: FPGA: Xmit ZDACW 27993\n [Z Motor]
17-03-18 04:05:11.304 -07 000000611 INF: FPGA: Recv ZDACW
17-03-18 04:05:11.314 -07 000000610 INF: FPGA: 'ZDACW 27993' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 04:05:11.314 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:05:11.314 -07 000000561 INF: FPGA: Recv ZDACR 27993
17-03-18 04:05:11.324 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 04:05:11.324 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:05:11.474 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:05:11.474 -07 000000437 INF: FPGA: Recv ZSGSRD 29239
17-03-18 04:05:11.484 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:05:11.484 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:05:11.484 -07 000000012 INF: FPGA: Recv ZSGSRD 29235
17-03-18 04:05:11.494 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:05:11.494 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:05:11.494 -07 000000455 INF: FPGA: Recv ZSGSRD 29240
17-03-18 04:05:11.504 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:05:11.504 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:05:11.504 -07 000000501 INF: FPGA: Recv ZSGSRD 29238
17-03-18 04:05:11.514 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:05:11.514 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:05:11.514 -07 000000480 INF: FPGA: Recv ZSGSRD 29236
17-03-18 04:05:11.524 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:05:11.524 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:05:11.524 -07 000000512 INF: FPGA: Recv ZSGSRD 29235
17-03-18 04:05:11.534 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:05:11.534 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:05:11.534 -07 000000487 INF: FPGA: Recv ZSGSRD 29234
17-03-18 04:05:11.544 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:05:11.544 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:05:11.544 -07 000000579 INF: FPGA: Recv ZSGSRD 29235
17-03-18 04:05:11.554 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:05:11.554 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:05:11.554 -07 000000444 INF: FPGA: Recv ZSGSRD 29236
17-03-18 04:05:11.564 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:05:11.564 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:05:11.564 -07 000000512 INF: FPGA: Recv ZSGSRD 29233
17-03-18 04:05:11.574 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:05:11.574 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:05:11.574 -07 000000455 INF: FPGA: Recv ZPIEZORD 24651
17-03-18 04:05:11.584 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:05:11.584 -07 000000610 INF: Z Motor: Piezo is near 32.7 V (nominally 0 to 100 V), expect near 42.7 V, since DAC is at 4.271 V. Piezo Error = -10.1 V.
17-03-18 04:05:11.584 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.1 um, Read 10 ADC samples: Avg = 29236 (-127.4 uncal um), Error = 0.8 uncal um, Median = 29236 (-127.4 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 29233 (-127.3 uncal um), Max = 29240 (-127.4 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 04:05:11.584 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29236, posNoise = 4, negNoise = 3
17-03-18 04:05:11.584 -07 000000610 INF: Z Motor: After move to -0.128144, error = 0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:05:11.584 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-18 04:05:11.584 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:05:11.584 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:05:11.584 -07 000000480 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:05:11.584 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:05:11.584 -07 000000447 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:05:11.584 -07 000000625 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:05:11.584 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:05:11.584 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:05:11.584 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:05:11.584 -07 000000447 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:05:11.584 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:05:11.584 -07 000000625 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:05:11.594 -07 000000447 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 04:05:11.594 -07 000000447 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:05:11.594 -07 000000625 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 04:05:11.594 -07 000000625 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:05:11.604 -07 000000625 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 04:05:11.604 -07 000000625 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 04:05:11.604 -07 000000447 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 04:05:11.604 -07 000000447 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 04:05:11.604 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 414 414 199 199 28170 150\n [Camera]
17-03-18 04:05:11.634 -07 000000561 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:05:11.634 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 119. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1710, R2=1777, Total=3487. Warn if over 250 bubbles per interval.
17-03-18 04:05:11.804 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:05:12.224 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 606
17-03-18 04:05:12.224 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 606
17-03-18 04:05:12.224 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:05:12.224 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:05:12.224 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-18 04:05:12.224 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 606
17-03-18 04:05:12.224 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 606
17-03-18 04:05:12.224 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:05:12.224 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:05:12.224 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-18 04:05:12.414 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28170 799
17-03-18 04:05:12.564 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning grn on 949
17-03-18 04:05:12.594 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 377 ms.
17-03-18 04:05:12.594 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-18 04:05:12.604 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:05:12.604 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 375 ms.
17-03-18 04:05:12.604 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-18 04:05:12.604 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:05:12.604 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 04:05:12.604 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-18 04:05:12.604 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 04:05:12.614 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-18 04:05:12.764 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1148
17-03-18 04:05:12.764 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1148
17-03-18 04:05:12.764 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:05:12.764 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:05:12.764 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-18 04:05:12.764 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1148
17-03-18 04:05:12.764 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1148
17-03-18 04:05:12.764 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:05:12.764 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:05:12.764 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 2684358704, 0x0, 418435064) start.
17-03-18 04:05:12.954 -07 000000618 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 120, FrontChillerTemperature: 3.999021,
17-03-18 04:05:12.954 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP 1340
17-03-18 04:05:12.954 -07 000000561 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:05:12.954 -07 000000610 INF: FPGA: 'CAMDBLSNAP 414 414 199 199 28170 150' command took 2 ms to send, 1342 ms to get response, and 1347 ms overall
17-03-18 04:05:12.954 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 04:05:12.954 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 17 at Y-position 72.34912109375, Z-Position -0.128141618187658. ------
17-03-18 04:05:12.964 -07 000000590 INF: Y Motor: MoveYZ optimized starting. Moving Y to 73.1926 mm, moving Z to -0.13470 mm
17-03-18 04:05:12.964 -07 000000590 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:05:12.964 -07 000000437 INF: Y Motor: Entering MoveAbsStepped (target = 117108 steps, sync = True, waitForSettling = True)
17-03-18 04:05:12.964 -07 000000437 INF: Y Motor: Moving to 73.1926 mm, started at 72.3491 mm, delta = 0.8435 mm
17-03-18 04:05:12.964 -07 000000561 INF: Z Motor: Entering MoveAbsStepped (DAC = 29425, sync = True, waitForSettling = False)
17-03-18 04:05:12.964 -07 000000561 INF: Z Motor: Moving to -0.134699 mm, started at -0.128142 mm, distance = -6.56 um
17-03-18 04:05:12.974 -07 000000561 INF: FPGA: Xmit ZDACW 29425\n [Z Motor]
17-03-18 04:05:12.974 -07 000000455 INF: FPGA: Recv ZDACW
17-03-18 04:05:12.984 -07 000000561 INF: FPGA: 'ZDACW 29425' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-18 04:05:12.984 -07 000000012 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:05:12.984 -07 000000487 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:05:12.994 -07 000000012 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 04:05:12.994 -07 000000437 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:05:12.994 -07 000000455 INF: FPGA: Recv YRDPOS 148171
17-03-18 04:05:13.004 -07 000000437 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 35 ms overall
17-03-18 04:05:13.004 -07 000000437 INF: Y Motor: Encoder = 148171 = motor step 115758.6 = 72.3491 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:05:13.004 -07 000000437 INF: Y Motor: Last commanded position = 72.3626 mm (115780.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:05:13.004 -07 000000437 INF: Y Motor: Moving 1350 steps-28
17-03-18 04:05:13.014 -07 000000561 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:05:13.014 -07 000000618 INF: FPGA: Recv ZDACR 29425
17-03-18 04:05:13.024 -07 000000012 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:05:13.024 -07 000000561 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 39 ms overall
17-03-18 04:05:13.024 -07 000000561 INF: Z Motor: MoveAbsStepped took 55 ms (did NOT wait for settling yet))
17-03-18 04:05:13.034 -07 000000437 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:05:13.154 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 2684358704, 0x0, 418435064) end. Duration was 385 ms.
17-03-18 04:05:13.154 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-18 04:05:13.154 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:05:13.154 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 390 ms.
17-03-18 04:05:13.154 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-18 04:05:13.154 -07 000000625 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:05:13.154 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:05:13.164 -07 000000625 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 04:05:13.164 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 04:05:13.164 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 04:05:13.224 -07 000000561 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:05:13.224 -07 000000012 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 232 ms overall
17-03-18 04:05:13.404 -07 000000608 INF: FPGA: Recv YMVTILE
17-03-18 04:05:13.404 -07 000000437 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 407 ms overall
17-03-18 04:05:13.454 -07 000000437 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:05:13.464 -07 000000625 INF: FPGA: Recv YRDPOS 149863
17-03-18 04:05:13.464 -07 000000437 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 04:05:13.464 -07 000000437 INF: Y Motor: Encoder = 149863 = motor step 117080.5 = 73.1753 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:05:13.464 -07 000000437 INF: Y Motor: Position error before settling (table move) = -35 encoder counts (-0.017 mm)
17-03-18 04:05:13.464 -07 000000437 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 408 ms, distance = 0.843 mm, average velocity = 2.067 mm/sec
17-03-18 04:05:14.414 -07 000000437 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:05:14.414 -07 000000012 INF: FPGA: Recv YRDPOS 149864
17-03-18 04:05:14.424 -07 000000437 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:05:14.424 -07 000000437 INF: Y Motor: Encoder = 149864 = motor step 117081.3 = 73.1758 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:05:14.454 -07 000000437 INF: Y Motor: After move to 73.192604, error = -0.016823, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:05:14.454 -07 000000437 INF: Y Motor: Position error after settling (table move) = -34 encoder counts (-0.017 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 04:05:14.454 -07 000000437 INF: Y Motor: Moved to 73.1758 after 1486 ms (table move)
17-03-18 04:05:14.454 -07 000000590 INF: Z Motor: EndOfMoveAbsStepped: target = -0.134699 mm (DAC = 29425)
17-03-18 04:05:14.454 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:05:14.454 -07 000000455 INF: FPGA: Recv ZSGSRD 30262
17-03-18 04:05:14.464 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 04:05:14.464 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:05:14.464 -07 000000625 INF: FPGA: Recv ZSGSRD 30260
17-03-18 04:05:14.474 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:05:14.474 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:05:14.474 -07 000000480 INF: FPGA: Recv ZSGSRD 30255
17-03-18 04:05:14.484 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:05:14.484 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:05:14.484 -07 000000012 INF: FPGA: Recv ZSGSRD 30260
17-03-18 04:05:14.494 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:05:14.494 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:05:14.494 -07 000000455 INF: FPGA: Recv ZSGSRD 30257
17-03-18 04:05:14.504 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:05:14.504 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:05:14.504 -07 000000611 INF: FPGA: Recv ZSGSRD 30256
17-03-18 04:05:14.514 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:05:14.514 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:05:14.514 -07 000000625 INF: FPGA: Recv ZSGSRD 30253
17-03-18 04:05:14.524 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:05:14.524 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:05:14.524 -07 000000512 INF: FPGA: Recv ZSGSRD 30252
17-03-18 04:05:14.534 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:05:14.534 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:05:14.534 -07 000000447 INF: FPGA: Recv ZSGSRD 30262
17-03-18 04:05:14.544 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:05:14.544 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:05:14.544 -07 000000611 INF: FPGA: Recv ZSGSRD 30257
17-03-18 04:05:14.554 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:05:14.554 -07 000000590 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:05:14.554 -07 000000608 INF: FPGA: Recv ZPIEZORD 26045
17-03-18 04:05:14.564 -07 000000590 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:05:14.564 -07 000000590 INF: Z Motor: Piezo is near 35.6 V (nominally 0 to 100 V), expect near 44.9 V, since DAC is at 4.490 V. Piezo Error = -9.3 V.
17-03-18 04:05:14.564 -07 000000590 INF: Z Motor: ReadAdcAverage: Commanded Z = -134.7 um, Read 10 ADC samples: Avg = 30257 (-133.9 uncal um), Error = 0.8 uncal um, Median = 30257 (-133.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 30252 (-133.9 uncal um), Max = 30262 (-133.9 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 04:05:14.564 -07 000000590 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30257, posNoise = 5, negNoise = 5
17-03-18 04:05:14.564 -07 000000590 INF: Z Motor: After move to -0.134699, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:05:14.564 -07 000000590 INF: Z Motor: Settle wait time = 1489 ms, measure time = 106 ms (allowed 150 ms), total time = 1595 ms
17-03-18 04:05:14.564 -07 000000590 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-18 04:05:14.614 -07 000000590 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1649 ms
17-03-18 04:05:14.614 -07 000000590 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:05:14.614 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:05:14.614 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:05:14.614 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:05:14.614 -07 000000480 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:05:14.614 -07 000000444 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:05:14.614 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:05:14.614 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 04:05:14.614 -07 000000444 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:05:14.624 -07 000000444 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 04:05:14.624 -07 000000444 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:05:14.624 -07 000000444 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 04:05:14.624 -07 000000444 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 04:05:14.634 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:05:14.674 -07 000000447 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:05:14.974 -07 000000611 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:05:14.974 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:05:14.974 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:05:14.974 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2539065104, 0x0, 559484976) start.
17-03-18 04:05:15.014 -07 000000625 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:05:15.014 -07 000000444 INF: FPGA: Recv CAMSNAP
17-03-18 04:05:15.014 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 3 ms to send, 378 ms to get response, and 386 ms overall
17-03-18 04:05:15.094 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2539065104, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 04:05:15.094 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:05:15.094 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 04:05:15.094 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 04:05:15.114 -07 000000455 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:05:15.114 -07 000000611 INF: Autofocus start
17-03-18 04:05:15.114 -07 000000611 INF: MeasureProfile start
17-03-18 04:05:15.114 -07 000000512 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:05:15.124 -07 000000455 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:05:15.124 -07 000000455 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:05:15.124 -07 000000611 INF: MeasureProfile done
17-03-18 04:05:15.124 -07 000000611 INF: X=0  Z correction [um]=-0.02394831
17-03-18 04:05:15.124 -07 000000611 INF: Autofocus finished
17-03-18 04:05:15.324 -07 000000444 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:05:15.324 -07 000000455 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:05:15.324 -07 000000610 INF: ------------ Scan Snapping tile 17 at Y-position 73.17578125, Z-position -0.134700738784396. ----------
17-03-18 04:05:15.324 -07 000000610 INF: Cycle	120	Tile	17	Exposure Settings		A	414	G	199	T	199	C	414
17-03-18 04:05:15.334 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27932, sync = True, waitForSettling = True)
17-03-18 04:05:15.334 -07 000000610 INF: Z Motor: Moving to -0.127864 mm, started at -0.134701 mm, distance = 6.84 um
17-03-18 04:05:15.334 -07 000000610 INF: FPGA: Xmit ZDACW 27932\n [Z Motor]
17-03-18 04:05:15.334 -07 000000608 INF: FPGA: Recv ZDACW
17-03-18 04:05:15.344 -07 000000610 INF: FPGA: 'ZDACW 27932' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:05:15.344 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:05:15.344 -07 000000480 INF: FPGA: Recv ZDACR 27932
17-03-18 04:05:15.354 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:05:15.354 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:05:15.504 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:05:15.504 -07 000000455 INF: FPGA: Recv ZSGSRD 29190
17-03-18 04:05:15.514 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:05:15.514 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:05:15.514 -07 000000625 INF: FPGA: Recv ZSGSRD 29192
17-03-18 04:05:15.524 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:05:15.524 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:05:15.524 -07 000000611 INF: FPGA: Recv ZSGSRD 29192
17-03-18 04:05:15.534 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:05:15.534 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:05:15.534 -07 000000480 INF: FPGA: Recv ZSGSRD 29191
17-03-18 04:05:15.544 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:05:15.544 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:05:15.544 -07 000000447 INF: FPGA: Recv ZSGSRD 29198
17-03-18 04:05:15.554 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 04:05:15.554 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:05:15.554 -07 000000501 INF: FPGA: Recv ZSGSRD 29196
17-03-18 04:05:15.564 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:05:15.564 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:05:15.564 -07 000000625 INF: FPGA: Recv ZSGSRD 29189
17-03-18 04:05:15.574 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:05:15.574 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:05:15.574 -07 000000437 INF: FPGA: Recv ZSGSRD 29193
17-03-18 04:05:15.584 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:05:15.584 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:05:15.584 -07 000000501 INF: FPGA: Recv ZSGSRD 29193
17-03-18 04:05:15.594 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:05:15.594 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:05:15.594 -07 000000455 INF: FPGA: Recv ZSGSRD 29194
17-03-18 04:05:15.604 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:05:15.604 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:05:15.604 -07 000000579 INF: FPGA: Recv ZPIEZORD 24616
17-03-18 04:05:15.614 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:05:15.614 -07 000000610 INF: Z Motor: Piezo is near 32.6 V (nominally 0 to 100 V), expect near 42.6 V, since DAC is at 4.262 V. Piezo Error = -10.0 V.
17-03-18 04:05:15.614 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -127.9 um, Read 10 ADC samples: Avg = 29193 (-127.1 uncal um), Error = 0.8 uncal um, Median = 29192 (-127.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29189 (-127.1 uncal um), Max = 29198 (-127.1 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 04:05:15.614 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29193, posNoise = 5, negNoise = 4
17-03-18 04:05:15.614 -07 000000610 INF: Z Motor: After move to -0.127864, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:05:15.614 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 04:05:15.614 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:05:15.614 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:05:15.614 -07 000000444 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:05:15.614 -07 000000455 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:05:15.614 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:05:15.614 -07 000000611 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:05:15.614 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:05:15.614 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:05:15.614 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:05:15.614 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:05:15.614 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:05:15.614 -07 000000611 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:05:15.624 -07 000000611 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 04:05:15.624 -07 000000611 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:05:15.624 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 04:05:15.624 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:05:15.634 -07 000000611 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 04:05:15.634 -07 000000611 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 04:05:15.634 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 04:05:15.634 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 04:05:15.634 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 414 414 199 199 28109 150\n [Camera]
17-03-18 04:05:15.834 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:05:16.244 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 606
17-03-18 04:05:16.244 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 606
17-03-18 04:05:16.244 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:05:16.244 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:05:16.254 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 2719780968, 0x0, 391868352) start.
17-03-18 04:05:16.254 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 606
17-03-18 04:05:16.254 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 606
17-03-18 04:05:16.254 -07 000000487 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:05:16.254 -07 000000487 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:05:16.254 -07 000000487 INF: Camera: sBCa_ReadImage(785074704, 2755203232, 0x0, 418435064) start.
17-03-18 04:05:16.444 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28109 799
17-03-18 04:05:16.594 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning grn on 949
17-03-18 04:05:16.634 -07 000000501 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:05:16.634 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 119. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1710, R2=1777, Total=3487. Warn if over 250 bubbles per interval.
17-03-18 04:05:16.654 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 2719780968, 0x0, 391868352) end. Duration was 407 ms.
17-03-18 04:05:16.654 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-18 04:05:16.654 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:05:16.654 -07 000000487 INF: Camera: sBCa_ReadImage(785074704, 2755203232, 0x0, 418435064) end. Duration was 407 ms.
17-03-18 04:05:16.664 -07 000000487 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 407 ms.
17-03-18 04:05:16.664 -07 000000487 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:05:16.664 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:05:16.664 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 412 ms.
17-03-18 04:05:16.664 -07 000000487 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:05:16.674 -07 000000487 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 421 ms.
17-03-18 04:05:16.794 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1148
17-03-18 04:05:16.794 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1148
17-03-18 04:05:16.794 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:05:16.924 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1148
17-03-18 04:05:16.924 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1148
17-03-18 04:05:16.924 -07 000000625 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:05:16.924 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:05:16.924 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 2818576432, 0x0, 391868352) start.
17-03-18 04:05:16.934 -07 000000625 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:05:16.934 -07 000000625 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) start.
17-03-18 04:05:16.984 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP 1340
17-03-18 04:05:16.984 -07 000000590 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:05:16.984 -07 000000610 INF: FPGA: 'CAMDBLSNAP 414 414 199 199 28109 150' command took 2 ms to send, 1342 ms to get response, and 1347 ms overall
17-03-18 04:05:16.984 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 04:05:16.984 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 18 at Y-position 73.17578125, Z-Position -0.127865377065563. ------
17-03-18 04:05:16.984 -07 000000611 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:05:16.984 -07 000000455 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.0226 mm, moving Z to -0.13382 mm
17-03-18 04:05:16.984 -07 000000455 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:05:16.994 -07 000000561 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:05:16.994 -07 000000611 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 04:05:16.994 -07 000000579 INF: Y Motor: Entering MoveAbsStepped (target = 118436 steps, sync = True, waitForSettling = True)
17-03-18 04:05:16.994 -07 000000579 INF: Y Motor: Moving to 74.0226 mm, started at 73.1758 mm, delta = 0.8468 mm
17-03-18 04:05:16.994 -07 000000447 INF: Z Motor: Entering MoveAbsStepped (DAC = 29234, sync = True, waitForSettling = False)
17-03-18 04:05:16.994 -07 000000447 INF: Z Motor: Moving to -0.133825 mm, started at -0.127865 mm, distance = -5.96 um
17-03-18 04:05:16.994 -07 000000611 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:05:17.004 -07 000000579 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:05:17.004 -07 000000501 INF: FPGA: Recv YRDPOS 149864
17-03-18 04:05:17.014 -07 000000579 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-18 04:05:17.014 -07 000000579 INF: Y Motor: Encoder = 149864 = motor step 117081.3 = 73.1758 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:05:17.014 -07 000000579 INF: Y Motor: Last commanded position = 73.1926 mm (117108.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:05:17.014 -07 000000579 INF: Y Motor: Moving 1355 steps-35
17-03-18 04:05:17.014 -07 000000447 INF: FPGA: Xmit ZDACW 29234\n [Z Motor]
17-03-18 04:05:17.014 -07 000000444 INF: FPGA: Recv ZDACW
17-03-18 04:05:17.024 -07 000000447 INF: FPGA: 'ZDACW 29234' command took 3 ms to send, 0 ms to get response, and 27 ms overall
17-03-18 04:05:17.024 -07 000000447 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:05:17.024 -07 000000618 INF: FPGA: Recv ZDACR 29234
17-03-18 04:05:17.034 -07 000000447 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:05:17.034 -07 000000579 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:05:17.034 -07 000000447 INF: Z Motor: MoveAbsStepped took 37 ms (did NOT wait for settling yet))
17-03-18 04:05:17.194 -07 000000444 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:05:17.194 -07 000000611 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 195 ms to get response, and 203 ms overall
17-03-18 04:05:17.324 -07 000000625 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) end. Duration was 394 ms.
17-03-18 04:05:17.324 -07 000000625 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 04:05:17.324 -07 000000625 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:05:17.324 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 2818576432, 0x0, 391868352) end. Duration was 401 ms.
17-03-18 04:05:17.324 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 04:05:17.324 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:05:17.334 -07 000000625 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:05:17.334 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:05:17.334 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 541 ms.
17-03-18 04:05:17.334 -07 000000625 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-18 04:05:17.404 -07 000000608 INF: FPGA: Recv YMVTILE
17-03-18 04:05:17.404 -07 000000579 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 394 ms overall
17-03-18 04:05:17.444 -07 000000579 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:05:17.454 -07 000000561 INF: FPGA: Recv YRDPOS 151567
17-03-18 04:05:17.454 -07 000000579 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 04:05:17.454 -07 000000579 INF: Y Motor: Encoder = 151567 = motor step 118411.7 = 74.0073 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:05:17.454 -07 000000579 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-18 04:05:17.454 -07 000000579 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 395 ms, distance = 0.847 mm, average velocity = 2.144 mm/sec
17-03-18 04:05:18.374 -07 000000012 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 120, FrontChillerTemperature: 4.014009,
17-03-18 04:05:18.414 -07 000000579 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:05:18.414 -07 000000437 INF: FPGA: Recv YRDPOS 151568
17-03-18 04:05:18.424 -07 000000579 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 04:05:18.424 -07 000000579 INF: Y Motor: Encoder = 151568 = motor step 118412.5 = 74.0078 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:05:18.444 -07 000000579 INF: Y Motor: After move to 74.022606, error = -0.014793, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:05:18.444 -07 000000579 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 04:05:18.444 -07 000000579 INF: Y Motor: Moved to 74.0078 after 1451 ms (table move)
17-03-18 04:05:18.444 -07 000000455 INF: Z Motor: EndOfMoveAbsStepped: target = -0.133825 mm (DAC = 29234)
17-03-18 04:05:18.444 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:05:18.444 -07 000000618 INF: FPGA: Recv ZSGSRD 30127
17-03-18 04:05:18.454 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 04:05:18.454 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:05:18.454 -07 000000447 INF: FPGA: Recv ZSGSRD 30128
17-03-18 04:05:18.464 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:05:18.464 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:05:18.464 -07 000000501 INF: FPGA: Recv ZSGSRD 30121
17-03-18 04:05:18.474 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:05:18.474 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:05:18.474 -07 000000480 INF: FPGA: Recv ZSGSRD 30124
17-03-18 04:05:18.484 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:05:18.484 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:05:18.484 -07 000000618 INF: FPGA: Recv ZSGSRD 30121
17-03-18 04:05:18.494 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:05:18.494 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:05:18.494 -07 000000512 INF: FPGA: Recv ZSGSRD 30124
17-03-18 04:05:18.504 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:05:18.504 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:05:18.504 -07 000000579 INF: FPGA: Recv ZSGSRD 30119
17-03-18 04:05:18.514 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:05:18.514 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:05:18.514 -07 000000501 INF: FPGA: Recv ZSGSRD 30114
17-03-18 04:05:18.524 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:05:18.524 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:05:18.524 -07 000000012 INF: FPGA: Recv ZSGSRD 30120
17-03-18 04:05:18.534 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:05:18.534 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:05:18.534 -07 000000444 INF: FPGA: Recv ZSGSRD 30120
17-03-18 04:05:18.544 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:05:18.544 -07 000000455 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:05:18.544 -07 000000487 INF: FPGA: Recv ZPIEZORD 25828
17-03-18 04:05:18.554 -07 000000455 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:05:18.554 -07 000000455 INF: Z Motor: Piezo is near 35.2 V (nominally 0 to 100 V), expect near 44.6 V, since DAC is at 4.461 V. Piezo Error = -9.4 V.
17-03-18 04:05:18.554 -07 000000455 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.8 um, Read 10 ADC samples: Avg = 30122 (-133.0 uncal um), Error = 0.8 uncal um, Median = 30121 (-133.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 30114 (-133.0 uncal um), Max = 30128 (-133.1 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 04:05:18.554 -07 000000455 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30122, posNoise = 6, negNoise = 8
17-03-18 04:05:18.554 -07 000000455 INF: Z Motor: After move to -0.133825, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:05:18.554 -07 000000455 INF: Z Motor: Settle wait time = 1454 ms, measure time = 105 ms (allowed 150 ms), total time = 1559 ms
17-03-18 04:05:18.554 -07 000000455 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 04:05:18.604 -07 000000455 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1611 ms
17-03-18 04:05:18.604 -07 000000455 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:05:18.604 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:05:18.604 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:05:18.604 -07 000000437 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:05:18.604 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:05:18.604 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:05:18.604 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:05:18.604 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:05:18.604 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:05:18.614 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 04:05:18.614 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:05:18.624 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-18 04:05:18.624 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-18 04:05:18.624 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:05:18.674 -07 000000012 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:05:18.974 -07 000000444 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:05:18.974 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:05:18.974 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:05:18.974 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2281705520, 0x0, 559484976) start.
17-03-18 04:05:19.014 -07 000000618 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:05:19.014 -07 000000437 INF: FPGA: Recv CAMSNAP
17-03-18 04:05:19.014 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 383 ms to get response, and 384 ms overall
17-03-18 04:05:19.094 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2281705520, 0x0, 559484976) end. Duration was 118 ms.
17-03-18 04:05:19.094 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:05:19.094 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 04:05:19.094 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 121 ms.
17-03-18 04:05:19.114 -07 000000455 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:05:19.114 -07 000000512 INF: Autofocus start
17-03-18 04:05:19.114 -07 000000512 INF: MeasureProfile start
17-03-18 04:05:19.114 -07 000000437 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:05:19.124 -07 000000455 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:05:19.124 -07 000000455 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:05:19.124 -07 000000512 INF: MeasureProfile done
17-03-18 04:05:19.124 -07 000000512 INF: X=-16  Z correction [um]=-0.08128808
17-03-18 04:05:19.124 -07 000000512 INF: Autofocus finished
17-03-18 04:05:19.324 -07 000000579 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:05:19.324 -07 000000455 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 202 ms overall
17-03-18 04:05:19.334 -07 000000610 INF: ------------ Scan Snapping tile 18 at Y-position 74.0078125, Z-position -0.133833470145259. ----------
17-03-18 04:05:19.334 -07 000000610 INF: Cycle	120	Tile	18	Exposure Settings		A	414	G	199	T	199	C	414
17-03-18 04:05:19.334 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27729, sync = True, waitForSettling = True)
17-03-18 04:05:19.334 -07 000000610 INF: Z Motor: Moving to -0.126935 mm, started at -0.133833 mm, distance = 6.90 um
17-03-18 04:05:19.334 -07 000000610 INF: FPGA: Xmit ZDACW 27729\n [Z Motor]
17-03-18 04:05:19.334 -07 000000447 INF: FPGA: Recv ZDACW
17-03-18 04:05:19.344 -07 000000610 INF: FPGA: 'ZDACW 27729' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 04:05:19.344 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:05:19.344 -07 000000561 INF: FPGA: Recv ZDACR 27729
17-03-18 04:05:19.354 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:05:19.354 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:05:19.504 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:05:19.504 -07 000000437 INF: FPGA: Recv ZSGSRD 29050
17-03-18 04:05:19.514 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:05:19.514 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:05:19.514 -07 000000512 INF: FPGA: Recv ZSGSRD 29047
17-03-18 04:05:19.524 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:05:19.524 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:05:19.524 -07 000000618 INF: FPGA: Recv ZSGSRD 29042
17-03-18 04:05:19.534 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:05:19.534 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:05:19.534 -07 000000590 INF: FPGA: Recv ZSGSRD 29043
17-03-18 04:05:19.544 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:05:19.544 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:05:19.544 -07 000000444 INF: FPGA: Recv ZSGSRD 29050
17-03-18 04:05:19.554 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:05:19.554 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:05:19.554 -07 000000608 INF: FPGA: Recv ZSGSRD 29051
17-03-18 04:05:19.564 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:05:19.564 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:05:19.564 -07 000000625 INF: FPGA: Recv ZSGSRD 29049
17-03-18 04:05:19.574 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:05:19.574 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:05:19.574 -07 000000480 INF: FPGA: Recv ZSGSRD 29053
17-03-18 04:05:19.584 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:05:19.584 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:05:19.584 -07 000000012 INF: FPGA: Recv ZSGSRD 29048
17-03-18 04:05:19.594 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:05:19.594 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:05:19.594 -07 000000561 INF: FPGA: Recv ZSGSRD 29046
17-03-18 04:05:19.604 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:05:19.604 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:05:19.604 -07 000000501 INF: FPGA: Recv ZPIEZORD 24451
17-03-18 04:05:19.614 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:05:19.614 -07 000000610 INF: Z Motor: Piezo is near 32.2 V (nominally 0 to 100 V), expect near 42.3 V, since DAC is at 4.231 V. Piezo Error = -10.1 V.
17-03-18 04:05:19.614 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -126.9 um, Read 10 ADC samples: Avg = 29048 (-126.2 uncal um), Error = 0.8 uncal um, Median = 29048 (-126.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29042 (-126.1 uncal um), Max = 29053 (-126.2 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 04:05:19.614 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29048, posNoise = 5, negNoise = 6
17-03-18 04:05:19.614 -07 000000610 INF: Z Motor: After move to -0.126935, error = 0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:05:19.614 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-18 04:05:19.614 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:05:19.614 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:05:19.614 -07 000000590 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:05:19.614 -07 000000625 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:05:19.614 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:05:19.614 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:05:19.614 -07 000000608 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:05:19.614 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:05:19.614 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 04:05:19.614 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:05:19.614 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:05:19.614 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:05:19.614 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 04:05:19.614 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:05:19.624 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-18 04:05:19.624 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:05:19.624 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-18 04:05:19.624 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 04:05:19.634 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 04:05:19.634 -07 000000608 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 04:05:19.634 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 414 414 199 199 27905 150\n [Camera]
17-03-18 04:05:19.834 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:05:20.244 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 606
17-03-18 04:05:20.244 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 606
17-03-18 04:05:20.244 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:05:20.244 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 606
17-03-18 04:05:20.244 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 606
17-03-18 04:05:20.254 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:05:20.254 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:05:20.254 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 2300786904, 0x0, 391868352) start.
17-03-18 04:05:20.254 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:05:20.254 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-18 04:05:20.434 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 27905 799
17-03-18 04:05:20.584 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning grn on 949
17-03-18 04:05:20.624 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 2300786904, 0x0, 391868352) end. Duration was 373 ms.
17-03-18 04:05:20.624 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 373 ms.
17-03-18 04:05:20.624 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:05:20.624 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 370 ms.
17-03-18 04:05:20.624 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 370 ms.
17-03-18 04:05:20.624 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:05:20.634 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 04:05:20.634 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-18 04:05:20.634 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 04:05:20.644 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-18 04:05:20.784 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1148
17-03-18 04:05:20.784 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1148
17-03-18 04:05:20.784 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:05:20.904 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1148
17-03-18 04:05:20.904 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1148
17-03-18 04:05:20.904 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:05:20.914 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:05:20.914 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:05:20.914 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-18 04:05:20.914 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 2296381600, 0x0, 418435064) start.
17-03-18 04:05:20.974 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP 1340
17-03-18 04:05:20.974 -07 000000608 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:05:20.974 -07 000000610 INF: FPGA: 'CAMDBLSNAP 414 414 199 199 27905 150' command took 2 ms to send, 1339 ms to get response, and 1348 ms overall
17-03-18 04:05:20.984 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 04:05:20.984 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 19 at Y-position 74.0078125, Z-Position -0.126933866305007. ------
17-03-18 04:05:20.984 -07 000000437 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:05:20.984 -07 000000579 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.8526 mm, moving Z to -0.13320 mm
17-03-18 04:05:20.984 -07 000000579 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:05:20.984 -07 000000561 INF: Y Motor: Entering MoveAbsStepped (target = 119764 steps, sync = True, waitForSettling = True)
17-03-18 04:05:20.984 -07 000000561 INF: Y Motor: Moving to 74.8526 mm, started at 74.0078 mm, delta = 0.8448 mm
17-03-18 04:05:20.984 -07 000000447 INF: Z Motor: Entering MoveAbsStepped (DAC = 29098, sync = True, waitForSettling = False)
17-03-18 04:05:20.984 -07 000000447 INF: Z Motor: Moving to -0.133202 mm, started at -0.126934 mm, distance = -6.27 um
17-03-18 04:05:20.984 -07 000000590 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:05:20.994 -07 000000437 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 04:05:20.994 -07 000000447 INF: FPGA: Xmit ZDACW 29098\n [Z Motor]
17-03-18 04:05:20.994 -07 000000618 INF: FPGA: Recv ZDACW
17-03-18 04:05:21.004 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:05:21.004 -07 000000447 INF: FPGA: 'ZDACW 29098' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-18 04:05:21.004 -07 000000487 INF: FPGA: Recv YRDPOS 151568
17-03-18 04:05:21.014 -07 000000437 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:05:21.014 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-18 04:05:21.014 -07 000000561 INF: Y Motor: Encoder = 151568 = motor step 118412.5 = 74.0078 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:05:21.014 -07 000000561 INF: Y Motor: Last commanded position = 74.0226 mm (118436.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:05:21.014 -07 000000561 INF: Y Motor: Moving 1352 steps-31
17-03-18 04:05:21.024 -07 000000447 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:05:21.024 -07 000000611 INF: FPGA: Recv ZDACR 29098
17-03-18 04:05:21.034 -07 000000561 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:05:21.034 -07 000000447 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 04:05:21.034 -07 000000447 INF: Z Motor: MoveAbsStepped took 42 ms (did NOT wait for settling yet))
17-03-18 04:05:21.214 -07 000000608 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:05:21.214 -07 000000437 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 04:05:21.294 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 2296381600, 0x0, 418435064) end. Duration was 384 ms.
17-03-18 04:05:21.294 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-18 04:05:21.294 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:05:21.304 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:05:21.304 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 388 ms.
17-03-18 04:05:21.304 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-18 04:05:21.304 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:05:21.304 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:05:21.304 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 515 ms.
17-03-18 04:05:21.304 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-18 04:05:21.404 -07 000000611 INF: FPGA: Recv YMVTILE
17-03-18 04:05:21.404 -07 000000561 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 395 ms overall
17-03-18 04:05:21.434 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:05:21.444 -07 000000447 INF: FPGA: Recv YRDPOS 153254
17-03-18 04:05:21.444 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 04:05:21.444 -07 000000561 INF: Y Motor: Encoder = 153254 = motor step 119729.7 = 74.8311 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:05:21.444 -07 000000561 INF: Y Motor: Position error before settling (table move) = -44 encoder counts (-0.021 mm)
17-03-18 04:05:21.444 -07 000000561 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 395 ms, distance = 0.845 mm, average velocity = 2.139 mm/sec
17-03-18 04:05:21.634 -07 000000447 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:05:21.634 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 119. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1710, R2=1777, Total=3487. Warn if over 250 bubbles per interval.
17-03-18 04:05:22.394 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:05:22.394 -07 000000012 INF: FPGA: Recv YRDPOS 153255
17-03-18 04:05:22.404 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:05:22.404 -07 000000561 INF: Y Motor: Encoder = 153255 = motor step 119730.5 = 74.8315 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:05:22.424 -07 000000561 INF: Y Motor: After move to 74.852608, error = -0.021065, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:05:22.424 -07 000000561 INF: Y Motor: Position error after settling (table move) = -43 encoder counts (-0.021 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 04:05:22.424 -07 000000561 INF: Y Motor: Moved to 74.8315 after 1433 ms (table move)
17-03-18 04:05:22.424 -07 000000579 INF: Z Motor: EndOfMoveAbsStepped: target = -0.133202 mm (DAC = 29098)
17-03-18 04:05:22.424 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:05:22.424 -07 000000447 INF: FPGA: Recv ZSGSRD 30021
17-03-18 04:05:22.434 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:05:22.434 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:05:22.434 -07 000000611 INF: FPGA: Recv ZSGSRD 30018
17-03-18 04:05:22.444 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:05:22.444 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:05:22.444 -07 000000608 INF: FPGA: Recv ZSGSRD 30021
17-03-18 04:05:22.454 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:05:22.454 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:05:22.454 -07 000000561 INF: FPGA: Recv ZSGSRD 30023
17-03-18 04:05:22.464 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:05:22.464 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:05:22.464 -07 000000455 INF: FPGA: Recv ZSGSRD 30022
17-03-18 04:05:22.474 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:05:22.474 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:05:22.474 -07 000000437 INF: FPGA: Recv ZSGSRD 30029
17-03-18 04:05:22.484 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:05:22.484 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:05:22.484 -07 000000444 INF: FPGA: Recv ZSGSRD 30026
17-03-18 04:05:22.494 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:05:22.494 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:05:22.494 -07 000000512 INF: FPGA: Recv ZSGSRD 30028
17-03-18 04:05:22.504 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:05:22.504 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:05:22.504 -07 000000608 INF: FPGA: Recv ZSGSRD 30020
17-03-18 04:05:22.514 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:05:22.514 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:05:22.514 -07 000000608 INF: FPGA: Recv ZSGSRD 30023
17-03-18 04:05:22.524 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:05:22.524 -07 000000579 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:05:22.524 -07 000000590 INF: FPGA: Recv ZPIEZORD 25750
17-03-18 04:05:22.534 -07 000000579 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:05:22.534 -07 000000579 INF: Z Motor: Piezo is near 35.0 V (nominally 0 to 100 V), expect near 44.4 V, since DAC is at 4.440 V. Piezo Error = -9.4 V.
17-03-18 04:05:22.534 -07 000000579 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.2 um, Read 10 ADC samples: Avg = 30023 (-132.4 uncal um), Error = 0.8 uncal um, Median = 30022 (-132.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 30018 (-132.4 uncal um), Max = 30029 (-132.4 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 04:05:22.534 -07 000000579 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30023, posNoise = 6, negNoise = 5
17-03-18 04:05:22.534 -07 000000579 INF: Z Motor: After move to -0.133202, error = 0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:05:22.534 -07 000000579 INF: Z Motor: Settle wait time = 1436 ms, measure time = 107 ms (allowed 150 ms), total time = 1543 ms
17-03-18 04:05:22.534 -07 000000579 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-18 04:05:22.584 -07 000000579 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1595 ms
17-03-18 04:05:22.584 -07 000000579 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:05:22.584 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:05:22.584 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:05:22.584 -07 000000444 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:05:22.584 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:05:22.584 -07 000000447 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:05:22.584 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:05:22.584 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 04:05:22.584 -07 000000447 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:05:22.594 -07 000000447 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 04:05:22.594 -07 000000447 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:05:22.604 -07 000000447 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 04:05:22.604 -07 000000447 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-18 04:05:22.604 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:05:22.654 -07 000000561 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:05:22.954 -07 000000455 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:05:22.954 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:05:22.954 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:05:22.954 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2348678928, 0x0, 559484976) start.
17-03-18 04:05:22.994 -07 000000611 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:05:22.994 -07 000000447 INF: FPGA: Recv CAMSNAP
17-03-18 04:05:22.994 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 381 ms to get response, and 384 ms overall
17-03-18 04:05:23.084 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2348678928, 0x0, 559484976) end. Duration was 127 ms.
17-03-18 04:05:23.084 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:05:23.084 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 04:05:23.084 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 130 ms.
17-03-18 04:05:23.094 -07 000000608 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:05:23.094 -07 000000487 INF: Autofocus start
17-03-18 04:05:23.094 -07 000000487 INF: MeasureProfile start
17-03-18 04:05:23.094 -07 000000447 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:05:23.104 -07 000000608 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:05:23.104 -07 000000608 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:05:23.104 -07 000000487 INF: MeasureProfile done
17-03-18 04:05:23.104 -07 000000487 INF: X=16  Z correction [um]=0.0530179
17-03-18 04:05:23.104 -07 000000487 INF: Autofocus finished
17-03-18 04:05:23.304 -07 000000512 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:05:23.304 -07 000000608 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 203 ms overall
17-03-18 04:05:23.304 -07 000000610 INF: ------------ Scan Snapping tile 19 at Y-position 74.83154296875, Z-position -0.133197473143224. ----------
17-03-18 04:05:23.304 -07 000000610 INF: Cycle	120	Tile	19	Exposure Settings		A	414	G	199	T	199	C	414
17-03-18 04:05:23.314 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27622, sync = True, waitForSettling = True)
17-03-18 04:05:23.314 -07 000000610 INF: Z Motor: Moving to -0.126445 mm, started at -0.133197 mm, distance = 6.75 um
17-03-18 04:05:23.314 -07 000000610 INF: FPGA: Xmit ZDACW 27622\n [Z Motor]
17-03-18 04:05:23.314 -07 000000487 INF: FPGA: Recv ZDACW
17-03-18 04:05:23.324 -07 000000610 INF: FPGA: 'ZDACW 27622' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 04:05:23.324 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:05:23.324 -07 000000444 INF: FPGA: Recv ZDACR 27622
17-03-18 04:05:23.334 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:05:23.334 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:05:23.484 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:05:23.484 -07 000000625 INF: FPGA: Recv ZSGSRD 28971
17-03-18 04:05:23.494 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:05:23.494 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:05:23.494 -07 000000625 INF: FPGA: Recv ZSGSRD 28974
17-03-18 04:05:23.504 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:05:23.504 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:05:23.504 -07 000000487 INF: FPGA: Recv ZSGSRD 28969
17-03-18 04:05:23.514 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:05:23.514 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:05:23.514 -07 000000512 INF: FPGA: Recv ZSGSRD 28972
17-03-18 04:05:23.524 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:05:23.524 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:05:23.524 -07 000000501 INF: FPGA: Recv ZSGSRD 28969
17-03-18 04:05:23.534 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:05:23.534 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:05:23.534 -07 000000012 INF: FPGA: Recv ZSGSRD 28970
17-03-18 04:05:23.544 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:05:23.544 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:05:23.544 -07 000000579 INF: FPGA: Recv ZSGSRD 28975
17-03-18 04:05:23.554 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:05:23.554 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:05:23.554 -07 000000618 INF: FPGA: Recv ZSGSRD 28974
17-03-18 04:05:23.564 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:05:23.564 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:05:23.564 -07 000000480 INF: FPGA: Recv ZSGSRD 28969
17-03-18 04:05:23.574 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:05:23.574 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:05:23.574 -07 000000455 INF: FPGA: Recv ZSGSRD 28977
17-03-18 04:05:23.584 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:05:23.584 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:05:23.584 -07 000000444 INF: FPGA: Recv ZPIEZORD 24385
17-03-18 04:05:23.594 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:05:23.594 -07 000000610 INF: Z Motor: Piezo is near 32.1 V (nominally 0 to 100 V), expect near 42.1 V, since DAC is at 4.215 V. Piezo Error = -10.1 V.
17-03-18 04:05:23.594 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -126.4 um, Read 10 ADC samples: Avg = 28972 (-125.7 uncal um), Error = 0.8 uncal um, Median = 28972 (-125.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 28969 (-125.7 uncal um), Max = 28977 (-125.7 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 04:05:23.594 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 28972, posNoise = 5, negNoise = 3
17-03-18 04:05:23.594 -07 000000610 INF: Z Motor: After move to -0.126445, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:05:23.594 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 04:05:23.594 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:05:23.594 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:05:23.594 -07 000000012 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:05:23.594 -07 000000455 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:05:23.594 -07 000000590 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:05:23.594 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:05:23.594 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:05:23.594 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:05:23.594 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:05:23.594 -07 000000590 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:05:23.594 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:05:23.594 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:05:23.604 -07 000000590 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 04:05:23.604 -07 000000590 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:05:23.604 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 04:05:23.604 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:05:23.604 -07 000000590 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 04:05:23.604 -07 000000590 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 04:05:23.614 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 04:05:23.614 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 04:05:23.614 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 414 414 199 199 27799 150\n [Camera]
17-03-18 04:05:23.734 -07 000000437 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 120, FrontChillerTemperature: 4.011254,
17-03-18 04:05:23.814 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:05:24.224 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 606
17-03-18 04:05:24.224 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 606
17-03-18 04:05:24.224 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:05:24.234 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 606
17-03-18 04:05:24.234 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 606
17-03-18 04:05:24.234 -07 000000444 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:05:24.234 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:05:24.234 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-18 04:05:24.234 -07 000000444 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:05:24.234 -07 000000444 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) start.
17-03-18 04:05:24.424 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 27799 799
17-03-18 04:05:24.564 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP turning grn on 949
17-03-18 04:05:24.624 -07 000000444 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) end. Duration was 382 ms.
17-03-18 04:05:24.624 -07 000000444 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 383 ms.
17-03-18 04:05:24.624 -07 000000444 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:05:24.624 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 385 ms.
17-03-18 04:05:24.624 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-18 04:05:24.624 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:05:24.624 -07 000000444 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:05:24.624 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:05:24.624 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 04:05:24.634 -07 000000444 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 04:05:24.764 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1148
17-03-18 04:05:24.764 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1148
17-03-18 04:05:24.874 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1148
17-03-18 04:05:24.874 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1148
17-03-18 04:05:24.874 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:05:24.874 -07 000000487 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:05:24.884 -07 000000487 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:05:24.884 -07 000000487 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-18 04:05:24.884 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:05:24.884 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-18 04:05:24.964 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP 1341
17-03-18 04:05:24.964 -07 000000590 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:05:24.964 -07 000000610 INF: FPGA: 'CAMDBLSNAP 414 414 199 199 27799 150' command took 2 ms to send, 1341 ms to get response, and 1347 ms overall
17-03-18 04:05:25.264 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 378 ms.
17-03-18 04:05:25.264 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-18 04:05:25.264 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:05:25.264 -07 000000487 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 381 ms.
17-03-18 04:05:25.264 -07 000000487 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 381 ms.
17-03-18 04:05:25.264 -07 000000487 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:05:25.274 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:05:25.274 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-18 04:05:25.274 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) start.
17-03-18 04:05:25.274 -07 000000487 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:05:25.284 -07 000000487 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 04:05:25.314 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) end. Duration was 41 ms.
17-03-18 04:05:25.314 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) start.
17-03-18 04:05:25.354 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) end. Duration was 41 ms.
17-03-18 04:05:25.364 -07 000000610 INF: Enabling Skipping AutoFocus in the next 1 cycles.
17-03-18 04:05:25.374 -07 000000610 INF: Imaging Cycle 120: ScanTilesCommand Cycle 120 time end. Duration was 161520 ms.
17-03-18 04:05:25.374 -07 000000610 INF: =================== Cycle #120 ===================
17-03-18 04:05:25.374 -07 000000610 INF: ===================  ===================
17-03-18 04:05:25.374 -07 000000012 INF: FPGA: Xmit EXLED1ADCR\n [GreenLED]
17-03-18 04:05:25.374 -07 000000561 INF: FPGA: Recv EXLED1ADCR 24
17-03-18 04:05:25.384 -07 000000012 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 04:05:25.384 -07 000000012 INF: GreenLED: Using Green data: Photodiode ADC 24 --> 0.0 mW (old method), or 1.7 mW (new method). Difference = 1.7 mW
17-03-18 04:05:25.384 -07 000000012 INF: Predictive Diagnostic Log Cycle Entry Metrics: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 120, FrontChillerTemperature: 4.011254, FrontChillerHeatSinkTemperature: 0.432222, AmbientTemperature: 18.636, FlowCellCompartmentTemperature: 21.98239, FlowCellTargetTemperature: 22, FlowCellHeatSinkTemperature: 18.3534, GreenLEDSensorTemperature: 27.19867, PhotodiodePowerAdcGreen: 24, PhotodiodePowerMwGreen: 1.744678
17-03-18 04:05:25.474 -07 000000610 INF: Y-Drift Offset assigned 0.002126916.