17-03-18 04:05:25.524 -07 000000610 INF: =================== Cycle #121 ===================
17-03-18 04:05:25.524 -07 000000610 INF: Y Motor: Entering MoveAbsStepped (target = 120609 steps, sync = True, waitForSettling = True)
17-03-18 04:05:25.524 -07 000000610 INF: Y Motor: Moving to 75.3806 mm, started at 74.8315 mm, delta = 0.5490 mm
17-03-18 04:05:25.524 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:05:25.524 -07 000000487 INF: FPGA: Recv YRDPOS 153255
17-03-18 04:05:25.534 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 04:05:25.534 -07 000000610 INF: Y Motor: Encoder = 153255 = motor step 119730.5 = 74.8315 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:05:25.534 -07 000000610 INF: Y Motor: Last commanded position = 74.8526 mm (119764.2 steps), delta from last commanded position = 0.5280 mm (844.8 steps). UsingTableMove = False
17-03-18 04:05:25.534 -07 000000610 INF: Y Motor: Moving to 154379 encoder counts
17-03-18 04:05:25.534 -07 000000610 INF: FPGA: Xmit YMVTO 154379\n [Y Motor]
17-03-18 04:05:25.644 -07 000000455 INF: FPGA: Recv YMVTO 154379 879
17-03-18 04:05:25.644 -07 000000610 INF: FPGA: 'YMVTO 154379' command took 0 ms to send, 108 ms to get response, and 118 ms overall
17-03-18 04:05:25.644 -07 000000610 INF: Y Motor: Position error before settling = 0 encoder counts (0.000 mm)
17-03-18 04:05:25.644 -07 000000610 INF: Y Motor: To move from 74.832 to 75.381 (0.549 mm) should take 878 steps, but required 879 steps (0.549 mm). Slippage = 0.001 mm (0.00%).
17-03-18 04:05:25.644 -07 000000610 INF: Y Motor: FPGA move command 'YMVTO 154379' took 118 ms, distance = 0.549 mm, average velocity = 4.653 mm/sec
17-03-18 04:05:26.634 -07 000000618 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:05:26.634 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 120. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1710, R2=1777, Total=3487. Warn if over 250 bubbles per interval.
17-03-18 04:05:28.644 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:05:28.644 -07 000000611 INF: FPGA: Recv YRDPOS 154387
17-03-18 04:05:28.654 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:05:28.654 -07 000000610 INF: Y Motor: Encoder = 154387 = motor step 120614.8 = 75.3843 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:05:28.684 -07 000000610 INF: Y Motor: After move to 75.380580, error = 0.003697, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:05:28.684 -07 000000610 INF: Y Motor: Position error after settling = 8 encoder counts (0.004 mm), Delta during settling = 8 counts (0.004 mm)
17-03-18 04:05:28.684 -07 000000610 INF: Y Motor: Moved to 75.3843 after 3155 ms
17-03-18 04:05:28.684 -07 000000610 INF: =================== Cycle #121, Flow Cell Temp 60° ===================
17-03-18 04:05:28.684 -07 000000610 INF: =================== Cycle #121, Flow Cell Temp 60°, FC temperature to 60° ===================
17-03-18 04:05:28.684 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 60000000\n [FlowCellTempControl]
17-03-18 04:05:28.694 -07 000000579 INF: FPGA: Recv TEC2TEMP 
17-03-18 04:05:28.694 -07 000000610 INF: FPGA: 'TEC2TEMP 0 60000000' command took 1 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 04:05:28.694 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-18 04:05:28.694 -07 000000512 INF: FPGA: Recv TEC2EN 
17-03-18 04:05:28.704 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 04:05:28.704 -07 000000610 INF: =================== Cycle #121, Flow Cell Temp 60° ===================
17-03-18 04:05:28.704 -07 000000610 INF: =================== Cycle #121 ===================
17-03-18 04:05:28.704 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-18 04:05:28.704 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 04:05:28.734 -07 000000610 INF: ReagentValve: Recv 18\r
17-03-18 04:05:28.734 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 24 to 3. Moving 3 positions.
17-03-18 04:05:28.734 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-18 04:05:29.034 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 04:05:29.054 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-18 04:05:29.054 -07 000000610 INF: ReagentValve: Move+ from 24 to 3 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-18 04:05:29.094 -07 000000444 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 121, FrontChillerTemperature: 3.985358,
17-03-18 04:05:29.104 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 04:05:29.124 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 04:05:29.124 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 04:05:29.224 -07 000000610 INF: =================== Cycle #121, Pumping Reagent PR2 (3) ===================
17-03-18 04:05:29.224 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1
17-03-18 04:05:29.224 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:05:29.254 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-18 04:05:29.254 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-18 04:05:29.254 -07 000000610 INF: =================== Cycle #121, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 04:05:29.384 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r
17-03-18 04:05:29.424 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:05:31.634 -07 000000608 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:05:31.634 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 120. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1710, R2=1777, Total=3487. Warn if over 250 bubbles per interval.
17-03-18 04:05:32.554 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:05:32.584 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:05:33.004 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:05:33.034 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:05:33.454 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:05:33.484 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:05:33.484 -07 000000610 INF: LanePump: Waited 4059 ms for pump motion to complete
17-03-18 04:05:33.484 -07 000000610 INF: =================== Cycle #121, Pumping Reagent PR2 (3) ===================
17-03-18 04:05:33.614 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:05:33.644 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 04:05:33.644 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 04:05:33.774 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:05:33.804 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 04:05:33.804 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 04:05:33.804 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 04:05:33.934 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 04:05:33.964 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:05:34.394 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:05:34.424 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:05:34.424 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 04:05:34.424 -07 000000610 INF: =================== Cycle #121 ===================
17-03-18 04:05:34.454 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 121, FrontChillerTemperature: 3.989471,
17-03-18 04:05:35.644 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-18 04:05:35.644 -07 000000610 INF: ReagentValve: Go to position 4 - PumpToFlowcell start
17-03-18 04:05:35.644 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 04:05:35.664 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 04:05:35.664 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 3 to 4. Moving 1 positions.
17-03-18 04:05:35.664 -07 000000610 INF: ReagentValve: Xmit +04\r
17-03-18 04:05:35.794 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 04:05:35.814 -07 000000610 INF: ReagentValve: Recv 00CD\r
17-03-18 04:05:35.814 -07 000000610 INF: ReagentValve: Move+ from 3 to 4 took 205 steps, expected 204. Error = 1 steps (0.5%)
17-03-18 04:05:35.864 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 04:05:35.884 -07 000000610 INF: ReagentValve: Recv 04\r
17-03-18 04:05:35.884 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 04:05:35.984 -07 000000610 INF: =================== Cycle #121, Pumping Reagent CMS (4) ===================
17-03-18 04:05:35.984 -07 000000610 INF: LanePump: Pumping from 4, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-18 04:05:35.984 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:05:36.014 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 04:05:36.014 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 04:05:36.014 -07 000000610 INF: =================== Cycle #121, Pumping Reagent CMS (4), Aspirating port InputPort ===================
17-03-18 04:05:36.144 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-18 04:05:36.184 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:05:36.634 -07 000000447 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:05:36.634 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 120. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1710, R2=1777, Total=3487. Warn if over 250 bubbles per interval.
17-03-18 04:05:37.624 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:05:37.654 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:05:38.074 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:05:38.104 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:05:38.104 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-18 04:05:38.104 -07 000000610 INF: =================== Cycle #121, Pumping Reagent CMS (4) ===================
17-03-18 04:05:38.234 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:05:38.264 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 04:05:38.264 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 04:05:38.394 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:05:38.424 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 04:05:38.424 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 04:05:38.424 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 04:05:38.554 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 04:05:38.584 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:05:39.014 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:05:39.044 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:05:39.044 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 04:05:39.044 -07 000000610 INF: =================== Cycle #121 ===================
17-03-18 04:05:39.814 -07 000000611 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 121, FrontChillerTemperature: 3.975845,
17-03-18 04:05:40.264 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-18 04:05:40.264 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-18 04:05:40.264 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 04:05:40.284 -07 000000610 INF: ReagentValve: Recv 04\r
17-03-18 04:05:40.284 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 4 to 3. Moving 1 positions.
17-03-18 04:05:40.284 -07 000000610 INF: ReagentValve: Xmit -03\r
17-03-18 04:05:40.434 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 04:05:40.454 -07 000000610 INF: ReagentValve: Recv 00E1\r
17-03-18 04:05:40.454 -07 000000610 INF: ReagentValve: Move- from 4 to 3 took 225 steps, expected 204. Error = 21 steps (10.3%)
17-03-18 04:05:40.504 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 04:05:40.524 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 04:05:40.524 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 04:05:40.624 -07 000000610 INF: =================== Cycle #121, Pumping Reagent PR2 (3) ===================
17-03-18 04:05:40.624 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-18 04:05:40.624 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:05:40.654 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 04:05:40.654 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 04:05:40.654 -07 000000610 INF: =================== Cycle #121, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 04:05:40.784 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-18 04:05:40.824 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:05:41.634 -07 000000455 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:05:41.634 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 120. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1710, R2=1777, Total=3487. Warn if over 250 bubbles per interval.
17-03-18 04:05:41.694 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:05:41.724 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:05:41.724 -07 000000610 INF: LanePump: Waited 900 ms for pump motion to complete
17-03-18 04:05:41.724 -07 000000610 INF: =================== Cycle #121, Pumping Reagent PR2 (3) ===================
17-03-18 04:05:41.854 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:05:41.884 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 04:05:41.884 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-18 04:05:42.014 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:05:42.044 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 04:05:42.044 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-18 04:05:42.044 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 04:05:42.174 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 04:05:42.204 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:05:42.634 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:05:42.664 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:05:42.664 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 04:05:42.664 -07 000000610 INF: =================== Cycle #121 ===================
17-03-18 04:05:42.664 -07 000000447 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 04:05:42.664 -07 000000618 INF: WaitCommand(10000) start
17-03-18 04:05:42.664 -07 000000447 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-18 04:05:43.884 -07 000000447 INF: AsyncDelayTimer waited 1213ms
17-03-18 04:05:43.884 -07 000000447 INF: LanePump: Xmit /1?\r
17-03-18 04:05:43.914 -07 000000447 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 04:05:43.914 -07 000000447 INF: LanePump: Current Position of Pump is: 1110
17-03-18 04:05:44.044 -07 000000447 INF: LanePump: Xmit /1V1500OA0R\r
17-03-18 04:05:44.084 -07 000000447 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:05:45.174 -07 000000590 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 121, FrontChillerTemperature: 3.989471,
17-03-18 04:05:45.614 -07 000000447 INF: LanePump: Xmit /1Q\r
17-03-18 04:05:45.644 -07 000000447 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:05:46.064 -07 000000447 INF: LanePump: Xmit /1Q\r
17-03-18 04:05:46.094 -07 000000447 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:05:46.094 -07 000000447 INF: LanePump: Waited 2009 ms for pump motion to complete
17-03-18 04:05:46.094 -07 000000447 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 04:05:46.094 -07 000000447 INF: ===================  ===================
17-03-18 04:05:46.634 -07 000000447 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:05:46.644 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 120. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1710, R2=1777, Total=3487. Warn if over 250 bubbles per interval.
17-03-18 04:05:50.534 -07 000000561 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 121, FrontChillerTemperature: 4.005817,
17-03-18 04:05:51.634 -07 000000501 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:05:51.634 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 120. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1710, R2=1777, Total=3487. Warn if over 250 bubbles per interval.
17-03-18 04:05:52.674 -07 000000618 INF: WaitCommand(10000) end
17-03-18 04:05:52.674 -07 000000610 INF: =================== Cycle #121, Pumping Reagent PR2 (3) ===================
17-03-18 04:05:52.674 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 250 µL, calling command Pumping to Flow Cell #1
17-03-18 04:05:52.674 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:05:52.704 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-18 04:05:52.704 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-18 04:05:52.704 -07 000000610 INF: =================== Cycle #121, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 04:05:52.834 -07 000000610 INF: LanePump: Xmit /1V400IP1500R\r
17-03-18 04:05:52.874 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:05:55.894 -07 000000012 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 121, FrontChillerTemperature: 3.994908,
17-03-18 04:05:56.634 -07 000000447 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:05:56.634 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 120. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1710, R2=1777, Total=3487. Warn if over 250 bubbles per interval.
17-03-18 04:05:59.004 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:05:59.034 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:05:59.454 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:05:59.484 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:05:59.904 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:05:59.934 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:06:00.354 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:06:00.384 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:06:00.804 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:06:00.834 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:06:00.834 -07 000000610 INF: LanePump: Waited 7959 ms for pump motion to complete
17-03-18 04:06:00.834 -07 000000610 INF: =================== Cycle #121, Pumping Reagent PR2 (3) ===================
17-03-18 04:06:00.964 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:06:00.994 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-18 04:06:00.994 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-18 04:06:01.124 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:06:01.154 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-18 04:06:01.154 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-18 04:06:01.154 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 04:06:01.254 -07 000000608 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 121, FrontChillerTemperature: 4.004458,
17-03-18 04:06:01.284 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 04:06:01.314 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:06:01.634 -07 000000579 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 2 R1 2
17-03-18 04:06:01.634 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 120. Bubbles during last 5000 ms interval: R1=2, R2=2, Total=4. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1712, R2=1779, Total=3491. Warn if over 250 bubbles per interval.
17-03-18 04:06:01.744 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:06:01.774 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:06:01.774 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 04:06:01.774 -07 000000610 INF: =================== Cycle #121 ===================
17-03-18 04:06:02.994 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-18 04:06:02.994 -07 000000610 INF: ReagentValve: Go to position 1 - PumpToFlowcell start
17-03-18 04:06:02.994 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 04:06:03.014 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 04:06:03.014 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 1. Moving 2 positions.
17-03-18 04:06:03.014 -07 000000610 INF: ReagentValve: Xmit -01\r
17-03-18 04:06:03.224 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 04:06:03.244 -07 000000610 INF: ReagentValve: Recv 0198\r
17-03-18 04:06:03.244 -07 000000610 INF: ReagentValve: Move- from 3 to 1 took 408 steps, expected 408. Error = 0 steps (0.0%)
17-03-18 04:06:03.294 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 04:06:03.314 -07 000000610 INF: ReagentValve: Recv 01\r
17-03-18 04:06:03.314 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 04:06:03.414 -07 000000610 INF: =================== Cycle #121, Pumping Reagent IMT (1) ===================
17-03-18 04:06:03.414 -07 000000610 INF: LanePump: Pumping from 1, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-18 04:06:03.414 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:06:03.444 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-18 04:06:03.444 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-18 04:06:03.444 -07 000000610 INF: =================== Cycle #121, Pumping Reagent IMT (1), Aspirating port InputPort ===================
17-03-18 04:06:03.574 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-18 04:06:03.614 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:06:05.054 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:06:05.084 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:06:05.504 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:06:05.534 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:06:05.534 -07 000000610 INF: LanePump: Waited 1920 ms for pump motion to complete
17-03-18 04:06:05.534 -07 000000610 INF: =================== Cycle #121, Pumping Reagent IMT (1) ===================
17-03-18 04:06:05.664 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:06:05.694 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-18 04:06:05.694 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-18 04:06:05.824 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:06:05.854 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-18 04:06:05.854 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-18 04:06:05.854 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 04:06:05.984 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 04:06:06.014 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:06:06.444 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:06:06.474 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:06:06.474 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 04:06:06.474 -07 000000610 INF: =================== Cycle #121 ===================
17-03-18 04:06:06.614 -07 000000444 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 121, FrontChillerTemperature: 4.018051,
17-03-18 04:06:06.634 -07 000000444 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:06:06.634 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 120. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1712, R2=1779, Total=3491. Warn if over 250 bubbles per interval.
17-03-18 04:06:07.694 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-18 04:06:07.694 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-18 04:06:07.694 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 04:06:07.714 -07 000000610 INF: ReagentValve: Recv 01\r
17-03-18 04:06:07.714 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 1 to 3. Moving 2 positions.
17-03-18 04:06:07.714 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-18 04:06:07.944 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 04:06:07.964 -07 000000610 INF: ReagentValve: Recv 01AC\r
17-03-18 04:06:07.964 -07 000000610 INF: ReagentValve: Move+ from 1 to 3 took 428 steps, expected 408. Error = 20 steps (4.9%)
17-03-18 04:06:08.014 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 04:06:08.034 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 04:06:08.034 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 04:06:08.134 -07 000000610 INF: =================== Cycle #121, Pumping Reagent PR2 (3) ===================
17-03-18 04:06:08.134 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-18 04:06:08.134 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:06:08.174 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-18 04:06:08.174 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-18 04:06:08.174 -07 000000610 INF: =================== Cycle #121, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 04:06:08.304 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-18 04:06:08.344 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:06:09.214 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:06:09.244 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:06:09.244 -07 000000610 INF: LanePump: Waited 900 ms for pump motion to complete
17-03-18 04:06:09.244 -07 000000610 INF: =================== Cycle #121, Pumping Reagent PR2 (3) ===================
17-03-18 04:06:09.374 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:06:09.404 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-18 04:06:09.404 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-18 04:06:09.534 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:06:09.564 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-18 04:06:09.564 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-18 04:06:09.564 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 04:06:09.694 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 04:06:09.724 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:06:10.154 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:06:10.184 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:06:10.184 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-18 04:06:10.184 -07 000000610 INF: =================== Cycle #121 ===================
17-03-18 04:06:10.184 -07 000000610 INF: =================== Cycle #121, Flow Cell Temp 65° ===================
17-03-18 04:06:10.184 -07 000000610 INF: =================== Cycle #121, Flow Cell Temp 65°, FC temperature to 65° ===================
17-03-18 04:06:10.184 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 65000000\n [FlowCellTempControl]
17-03-18 04:06:10.184 -07 000000480 INF: FPGA: Recv TEC2TEMP 
17-03-18 04:06:10.194 -07 000000610 INF: FPGA: 'TEC2TEMP 0 65000000' command took 1 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:06:10.194 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-18 04:06:10.194 -07 000000608 INF: FPGA: Recv TEC2EN 
17-03-18 04:06:10.204 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:06:10.204 -07 000000610 INF: =================== Cycle #121, Flow Cell Temp 65° ===================
17-03-18 04:06:10.204 -07 000000610 INF: =================== Cycle #121 ===================
17-03-18 04:06:10.204 -07 000000610 INF: WaitCommand(30000) start
17-03-18 04:06:11.634 -07 000000487 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:06:11.634 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 120. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1712, R2=1779, Total=3491. Warn if over 250 bubbles per interval.
17-03-18 04:06:11.974 -07 000000437 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 121, FrontChillerTemperature: 3.988112,
17-03-18 04:06:16.634 -07 000000444 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:06:16.634 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 120. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1712, R2=1779, Total=3491. Warn if over 250 bubbles per interval.
17-03-18 04:06:17.334 -07 000000480 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 121, FrontChillerTemperature: 4.018051,
17-03-18 04:06:21.634 -07 000000437 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:06:21.634 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 120. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1712, R2=1779, Total=3491. Warn if over 250 bubbles per interval.
17-03-18 04:06:22.694 -07 000000625 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 121, FrontChillerTemperature: 4.004458,
17-03-18 04:06:26.634 -07 000000444 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:06:26.634 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 120. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1712, R2=1779, Total=3491. Warn if over 250 bubbles per interval.
17-03-18 04:06:28.054 -07 000000487 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 121, FrontChillerTemperature: 3.981281,
17-03-18 04:06:31.634 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:06:31.634 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 120. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1712, R2=1779, Total=3491. Warn if over 250 bubbles per interval.
17-03-18 04:06:33.414 -07 000000444 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 121, FrontChillerTemperature: 3.997626,
17-03-18 04:06:36.634 -07 000000487 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:06:36.634 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 120. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1712, R2=1779, Total=3491. Warn if over 250 bubbles per interval.
17-03-18 04:06:38.774 -07 000000447 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 121, FrontChillerTemperature: 4.011254,
17-03-18 04:06:40.214 -07 000000610 INF: WaitCommand(30000) end
17-03-18 04:06:40.214 -07 000000610 INF: =================== Cycle #121, Pumping Reagent PR2 (3) ===================
17-03-18 04:06:40.214 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 5 µL, calling command Pumping to Flow Cell #1
17-03-18 04:06:40.314 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:06:40.344 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-18 04:06:40.344 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-18 04:06:40.344 -07 000000610 INF: =================== Cycle #121, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 04:06:40.474 -07 000000610 INF: LanePump: Xmit /1V400IP30R\r
17-03-18 04:06:40.514 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:06:41.054 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:06:41.084 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:06:41.084 -07 000000610 INF: LanePump: Waited 569 ms for pump motion to complete
17-03-18 04:06:41.084 -07 000000610 INF: =================== Cycle #121, Pumping Reagent PR2 (3) ===================
17-03-18 04:06:41.214 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:06:41.244 -07 000000610 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-18 04:06:41.244 -07 000000610 INF: LanePump: Current Position of Pump is: 1920
17-03-18 04:06:41.374 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:06:41.404 -07 000000610 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-18 04:06:41.404 -07 000000610 INF: LanePump: Current Position of Pump is: 1920
17-03-18 04:06:41.404 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 04:06:41.534 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 04:06:41.564 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:06:41.634 -07 000000561 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:06:41.634 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 120. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1712, R2=1779, Total=3491. Warn if over 250 bubbles per interval.
17-03-18 04:06:41.994 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:06:42.024 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:06:42.024 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 04:06:42.024 -07 000000610 INF: =================== Cycle #121 ===================
17-03-18 04:06:42.024 -07 000000590 INF: WaitCommand(30000) start
17-03-18 04:06:42.024 -07 000000444 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 04:06:42.024 -07 000000444 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-18 04:06:43.244 -07 000000444 INF: AsyncDelayTimer waited 1215ms
17-03-18 04:06:43.244 -07 000000444 INF: LanePump: Xmit /1?\r
17-03-18 04:06:43.274 -07 000000444 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-18 04:06:43.274 -07 000000444 INF: LanePump: Current Position of Pump is: 1920
17-03-18 04:06:43.404 -07 000000444 INF: LanePump: Xmit /1V1500OA0R\r
17-03-18 04:06:43.444 -07 000000444 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:06:44.134 -07 000000625 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 121, FrontChillerTemperature: 4.012614,
17-03-18 04:06:45.784 -07 000000444 INF: LanePump: Xmit /1Q\r
17-03-18 04:06:45.814 -07 000000444 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:06:46.234 -07 000000444 INF: LanePump: Xmit /1Q\r
17-03-18 04:06:46.264 -07 000000444 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:06:46.264 -07 000000444 INF: LanePump: Waited 2819 ms for pump motion to complete
17-03-18 04:06:46.264 -07 000000444 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 04:06:46.264 -07 000000444 INF: ===================  ===================
17-03-18 04:06:46.634 -07 000000012 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:06:46.634 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 120. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1712, R2=1779, Total=3491. Warn if over 250 bubbles per interval.
17-03-18 04:06:49.494 -07 000000437 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 121, FrontChillerTemperature: 4.026244,
17-03-18 04:06:51.634 -07 000000487 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:06:51.634 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 120. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1712, R2=1779, Total=3491. Warn if over 250 bubbles per interval.
17-03-18 04:06:54.854 -07 000000611 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 121, FrontChillerTemperature: 3.999021,
17-03-18 04:06:56.634 -07 000000487 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:06:56.634 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 120. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1712, R2=1779, Total=3491. Warn if over 250 bubbles per interval.
17-03-18 04:07:00.214 -07 000000012 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 121, FrontChillerTemperature: 3.999021,
17-03-18 04:07:01.634 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:07:01.634 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 120. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1712, R2=1779, Total=3491. Warn if over 250 bubbles per interval.
17-03-18 04:07:05.574 -07 000000618 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 121, FrontChillerTemperature: 4.005817,
17-03-18 04:07:06.634 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:07:06.634 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 120. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1712, R2=1779, Total=3491. Warn if over 250 bubbles per interval.
17-03-18 04:07:10.934 -07 000000487 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 121, FrontChillerTemperature: 3.997626,
17-03-18 04:07:11.634 -07 000000444 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:07:11.634 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 120. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1712, R2=1779, Total=3491. Warn if over 250 bubbles per interval.
17-03-18 04:07:12.034 -07 000000590 INF: WaitCommand(30000) end
17-03-18 04:07:12.034 -07 000000610 INF: =================== Cycle #121, Flow Cell Temp 22° ===================
17-03-18 04:07:12.034 -07 000000610 INF: =================== Cycle #121, Flow Cell Temp 22°, FC temperature to 22° ===================
17-03-18 04:07:12.034 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 22000000\n [FlowCellTempControl]
17-03-18 04:07:12.044 -07 000000608 INF: FPGA: Recv TEC2TEMP 
17-03-18 04:07:12.044 -07 000000610 INF: FPGA: 'TEC2TEMP 0 22000000' command took 1 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 04:07:12.044 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-18 04:07:12.044 -07 000000455 INF: FPGA: Recv TEC2EN 
17-03-18 04:07:12.054 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 04:07:12.054 -07 000000610 INF: =================== Cycle #121, Flow Cell Temp 22° ===================
17-03-18 04:07:12.054 -07 000000610 INF: =================== Cycle #121 ===================
17-03-18 04:07:12.054 -07 000000610 INF: =================== Cycle #121, Pumping Reagent PR2 (3) ===================
17-03-18 04:07:12.054 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1
17-03-18 04:07:12.054 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:07:12.094 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-18 04:07:12.094 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-18 04:07:12.094 -07 000000610 INF: =================== Cycle #121, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 04:07:12.224 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r
17-03-18 04:07:12.264 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:07:15.394 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:07:15.424 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:07:15.844 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:07:15.874 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:07:16.294 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:07:16.294 -07 000000625 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 121, FrontChillerTemperature: 3.981281,
17-03-18 04:07:16.324 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:07:16.324 -07 000000610 INF: LanePump: Waited 4059 ms for pump motion to complete
17-03-18 04:07:16.324 -07 000000610 INF: =================== Cycle #121, Pumping Reagent PR2 (3) ===================
17-03-18 04:07:16.454 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:07:16.484 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 04:07:16.484 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 04:07:16.614 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:07:16.644 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 04:07:16.644 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 04:07:16.644 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 04:07:16.644 -07 000000611 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 7 R1 5
17-03-18 04:07:16.644 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 120. Bubbles during last 5000 ms interval: R1=5, R2=7, Total=12. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1717, R2=1786, Total=3503. Warn if over 250 bubbles per interval.
17-03-18 04:07:16.774 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 04:07:16.804 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:07:17.234 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:07:17.264 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:07:17.264 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-18 04:07:17.264 -07 000000610 INF: =================== Cycle #121 ===================
17-03-18 04:07:18.484 -07 000000610 INF: AsyncDelayTimer waited 1217ms
17-03-18 04:07:18.484 -07 000000610 INF: ReagentValve: Go to position 2 - PumpToFlowcell start
17-03-18 04:07:18.484 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 04:07:18.504 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 04:07:18.504 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 2. Moving 1 positions.
17-03-18 04:07:18.504 -07 000000610 INF: ReagentValve: Xmit -02\r
17-03-18 04:07:18.654 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 04:07:18.674 -07 000000610 INF: ReagentValve: Recv 00E3\r
17-03-18 04:07:18.674 -07 000000610 INF: ReagentValve: Move- from 3 to 2 took 227 steps, expected 204. Error = 23 steps (11.3%)
17-03-18 04:07:18.724 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 04:07:18.744 -07 000000610 INF: ReagentValve: Recv 02\r
17-03-18 04:07:18.744 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 04:07:18.844 -07 000000610 INF: =================== Cycle #121, Pumping Reagent USM (2) ===================
17-03-18 04:07:18.844 -07 000000610 INF: LanePump: Pumping from 2, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-18 04:07:18.844 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:07:18.874 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 04:07:18.874 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 04:07:18.874 -07 000000610 INF: =================== Cycle #121, Pumping Reagent USM (2), Aspirating port InputPort ===================
17-03-18 04:07:19.004 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-18 04:07:19.044 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:07:20.484 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:07:20.514 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:07:20.934 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:07:20.964 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:07:20.964 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-18 04:07:20.964 -07 000000610 INF: =================== Cycle #121, Pumping Reagent USM (2) ===================
17-03-18 04:07:21.094 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:07:21.124 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 04:07:21.124 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 04:07:21.254 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:07:21.284 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 04:07:21.284 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 04:07:21.284 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 04:07:21.414 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 04:07:21.444 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:07:21.644 -07 000000455 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:07:21.644 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 120. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1717, R2=1786, Total=3503. Warn if over 250 bubbles per interval.
17-03-18 04:07:21.654 -07 000000487 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 121, FrontChillerTemperature: 3.996267,
17-03-18 04:07:21.874 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:07:21.904 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:07:21.904 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-18 04:07:21.904 -07 000000610 INF: =================== Cycle #121 ===================
17-03-18 04:07:23.124 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-18 04:07:23.124 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-18 04:07:23.124 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 04:07:23.144 -07 000000610 INF: ReagentValve: Recv 02\r
17-03-18 04:07:23.144 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 2 to 3. Moving 1 positions.
17-03-18 04:07:23.144 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-18 04:07:23.294 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 04:07:23.314 -07 000000610 INF: ReagentValve: Recv 00E3\r
17-03-18 04:07:23.314 -07 000000610 INF: ReagentValve: Move+ from 2 to 3 took 227 steps, expected 204. Error = 23 steps (11.3%)
17-03-18 04:07:23.364 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 04:07:23.384 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 04:07:23.384 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 04:07:23.484 -07 000000610 INF: =================== Cycle #121, Pumping Reagent PR2 (3) ===================
17-03-18 04:07:23.484 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-18 04:07:23.484 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:07:23.514 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 04:07:23.514 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 04:07:23.514 -07 000000610 INF: =================== Cycle #121, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 04:07:23.644 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-18 04:07:23.684 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:07:24.554 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:07:24.584 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:07:24.584 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-18 04:07:24.584 -07 000000610 INF: =================== Cycle #121, Pumping Reagent PR2 (3) ===================
17-03-18 04:07:24.714 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:07:24.744 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 04:07:24.744 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-18 04:07:24.874 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 04:07:24.904 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 04:07:24.904 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-18 04:07:24.904 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 04:07:25.034 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 04:07:25.064 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:07:25.494 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 04:07:25.524 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:07:25.524 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-18 04:07:25.524 -07 000000610 INF: =================== Cycle #121 ===================
17-03-18 04:07:25.524 -07 000000579 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 04:07:25.524 -07 000000501 INF: WaitCommand(10000) start
17-03-18 04:07:25.524 -07 000000579 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-18 04:07:26.644 -07 000000447 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 1
17-03-18 04:07:26.644 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 120. Bubbles during last 5000 ms interval: R1=1, R2=0, Total=1. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1718, R2=1786, Total=3504. Warn if over 250 bubbles per interval.
17-03-18 04:07:26.744 -07 000000579 INF: AsyncDelayTimer waited 1214ms
17-03-18 04:07:26.744 -07 000000579 INF: LanePump: Xmit /1?\r
17-03-18 04:07:26.774 -07 000000579 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 04:07:26.774 -07 000000579 INF: LanePump: Current Position of Pump is: 1110
17-03-18 04:07:26.904 -07 000000579 INF: LanePump: Xmit /1V1500OA0R\r
17-03-18 04:07:26.944 -07 000000579 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:07:27.014 -07 000000561 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 121, FrontChillerTemperature: 4.007176,
17-03-18 04:07:28.474 -07 000000579 INF: LanePump: Xmit /1Q\r
17-03-18 04:07:28.504 -07 000000579 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 04:07:28.924 -07 000000579 INF: LanePump: Xmit /1Q\r
17-03-18 04:07:28.954 -07 000000579 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 04:07:28.954 -07 000000579 INF: LanePump: Waited 2009 ms for pump motion to complete
17-03-18 04:07:28.954 -07 000000579 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 04:07:28.954 -07 000000579 INF: ===================  ===================
17-03-18 04:07:31.644 -07 000000561 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:07:31.644 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 120. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1718, R2=1786, Total=3504. Warn if over 250 bubbles per interval.
17-03-18 04:07:32.374 -07 000000480 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 121, FrontChillerTemperature: 3.997626,
17-03-18 04:07:35.534 -07 000000501 INF: WaitCommand(10000) end
17-03-18 04:07:35.534 -07 000000610 INF: =================== Cycle #121, Imaging ===================
17-03-18 04:07:35.534 -07 000000610 INF: Imaging Cycle 121: ScanTilesCommand Cycle 121 time start.
17-03-18 04:07:35.534 -07 000000610 INF: ReagentValve: Go to position 24 (Plug) - Start of ScanTilesCommand
17-03-18 04:07:35.534 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 04:07:35.564 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 04:07:35.564 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 24. Moving 3 positions.
17-03-18 04:07:35.564 -07 000000610 INF: ReagentValve: Xmit -18\r
17-03-18 04:07:35.864 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 04:07:35.884 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-18 04:07:35.884 -07 000000610 INF: ReagentValve: Move- from 3 to 24 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-18 04:07:35.934 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 04:07:35.954 -07 000000610 INF: ReagentValve: Recv 18\r
17-03-18 04:07:35.954 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:07:35.954 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:07:35.954 -07 000000618 INF: RedLED: Snapping RedLED at power = 1930.000 mW, snap mode for ~0 ms start.
17-03-18 04:07:35.954 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:07:35.954 -07 000000618 INF: FPGA: Xmit EXLED1ON\n [RedLED]
17-03-18 04:07:35.954 -07 000000590 INF: FPGA: Recv EXLED1ON 
17-03-18 04:07:35.964 -07 000000618 INF: FPGA: 'EXLED1ON' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 04:07:35.964 -07 000000618 INF: FPGA: Xmit EXLED1ADCR\n [RedLED]
17-03-18 04:07:35.964 -07 000000480 INF: FPGA: Recv EXLED1ADCR 23158
17-03-18 04:07:35.974 -07 000000618 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:07:35.974 -07 000000618 INF: RedLED: Using Red data: Photodiode ADC 23158 --> 7.4 mW (old method), or 205.3 mW (new method). Difference = 197.8 mW
17-03-18 04:07:35.974 -07 000000618 INF: FPGA: Xmit EXLED1OFF\n [RedLED]
17-03-18 04:07:35.974 -07 000000455 INF: FPGA: Recv EXLED1OFF 
17-03-18 04:07:35.984 -07 000000618 INF: FPGA: 'EXLED1OFF' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:07:35.984 -07 000000618 INF: RedLED: LED was on for 20 ms
17-03-18 04:07:35.984 -07 000000618 INF: RedLED: Snapping RedLED at power = 1930.000 mW, snap mode for ~0 ms end. Duration was 23 ms.
17-03-18 04:07:35.984 -07 000000618 INF: GreenLED: Snapping GreenLED at power = 5964.000 mW, snap mode for ~0 ms start.
17-03-18 04:07:35.984 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:07:35.984 -07 000000618 INF: FPGA: Xmit EXLED2ON\n [GreenLED]
17-03-18 04:07:35.984 -07 000000501 INF: FPGA: Recv EXLED2ON 
17-03-18 04:07:35.994 -07 000000618 INF: FPGA: 'EXLED2ON' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 04:07:35.994 -07 000000618 INF: FPGA: Xmit EXLED1ADCR\n [GreenLED]
17-03-18 04:07:35.994 -07 000000611 INF: FPGA: Recv EXLED1ADCR 2096
17-03-18 04:07:36.004 -07 000000618 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:07:36.004 -07 000000618 INF: GreenLED: Using Green data: Photodiode ADC 2096 --> 0.9 mW (old method), or 182.2 mW (new method). Difference = 181.2 mW
17-03-18 04:07:36.004 -07 000000618 INF: FPGA: Xmit EXLED2OFF\n [GreenLED]
17-03-18 04:07:36.004 -07 000000437 INF: FPGA: Recv EXLED2OFF 
17-03-18 04:07:36.014 -07 000000618 INF: FPGA: 'EXLED2OFF' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:07:36.014 -07 000000618 INF: GreenLED: LED was on for 20 ms
17-03-18 04:07:36.014 -07 000000618 INF: GreenLED: Snapping GreenLED at power = 5964.000 mW, snap mode for ~0 ms end. Duration was 28 ms.
17-03-18 04:07:36.014 -07 000000610 INF: FPGA: Xmit EMCUR 80\n [Compensator]
17-03-18 04:07:36.014 -07 000000012 INF: FPGA: Recv EMCUR 
17-03-18 04:07:36.024 -07 000000610 INF: FPGA: 'EMCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:07:36.024 -07 000000610 INF: FPGA: Xmit EMOUT 20 70\n [Compensator]
17-03-18 04:07:36.524 -07 000000437 INF: FPGA: Recv EMOUT
17-03-18 04:07:36.524 -07 000000610 INF: FPGA: 'EMOUT 20 70' command took 0 ms to send, 492 ms to get response, and 502 ms overall
17-03-18 04:07:36.524 -07 000000610 INF: FPGA: Xmit EMCUR 75\n [Compensator]
17-03-18 04:07:36.524 -07 000000480 INF: FPGA: Recv EMCUR 
17-03-18 04:07:36.534 -07 000000610 INF: FPGA: 'EMCUR 75' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:07:36.534 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 04:07:36.534 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 1 at Y-position 75.38427734375, Z-Position -0.126445626182233. ------
17-03-18 04:07:36.534 -07 000000437 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:07:36.534 -07 000000501 INF: Y Motor: MoveYZ optimized starting. Moving Y to 59.9126 mm, moving Z to -0.17849 mm
17-03-18 04:07:36.534 -07 000000501 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:07:36.534 -07 000000447 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True)
17-03-18 04:07:36.534 -07 000000447 INF: Y Motor: Moving to 59.9126 mm, started at 75.3843 mm, delta = -15.4717 mm
17-03-18 04:07:36.534 -07 000000012 INF: Z Motor: Entering MoveAbsStepped (DAC = 38991, sync = True, waitForSettling = False)
17-03-18 04:07:36.534 -07 000000012 INF: Z Motor: Moving to -0.178489 mm, started at -0.126446 mm, distance = -52.04 um
17-03-18 04:07:36.534 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:07:36.544 -07 000000437 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 04:07:36.544 -07 000000012 INF: FPGA: Xmit ZDACW 38991\n [Z Motor]
17-03-18 04:07:36.544 -07 000000579 INF: FPGA: Recv ZDACW
17-03-18 04:07:36.554 -07 000000012 INF: FPGA: 'ZDACW 38991' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:07:36.554 -07 000000447 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:07:36.554 -07 000000444 INF: FPGA: Recv YRDPOS 154388
17-03-18 04:07:36.564 -07 000000437 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:07:36.564 -07 000000447 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 20 ms overall
17-03-18 04:07:36.564 -07 000000447 INF: Y Motor: Encoder = 154388 = motor step 120615.6 = 75.3848 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:07:36.564 -07 000000447 INF: Y Motor: Last commanded position = 75.3806 mm (120608.9 steps), delta from last commanded position = -15.4680 mm (-24748.8 steps). UsingTableMove = False
17-03-18 04:07:36.564 -07 000000447 INF: Y Motor: Moving to 122701 encoder counts
17-03-18 04:07:36.574 -07 000000012 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:07:36.574 -07 000000608 INF: FPGA: Recv ZDACR 38991
17-03-18 04:07:36.584 -07 000000012 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 04:07:36.584 -07 000000012 INF: Z Motor: MoveAbsStepped took 41 ms (did NOT wait for settling yet))
17-03-18 04:07:36.584 -07 000000447 INF: FPGA: Xmit YMVTO 122701\n [Y Motor]
17-03-18 04:07:36.634 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 0
17-03-18 04:07:36.644 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 120. Bubbles during last 5000 ms interval: R1=0, R2=1, Total=1. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1718, R2=1787, Total=3505. Warn if over 250 bubbles per interval.
17-03-18 04:07:36.764 -07 000000480 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:07:36.764 -07 000000437 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 04:07:37.734 -07 000000611 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 121, FrontChillerTemperature: 4.016692,
17-03-18 04:07:38.264 -07 000000618 INF: FPGA: Recv YMVTO 122703 24783
17-03-18 04:07:38.264 -07 000000447 INF: FPGA: 'YMVTO 122701' command took 0 ms to send, 1676 ms to get response, and 1703 ms overall
17-03-18 04:07:38.264 -07 000000447 INF: Y Motor: Position error before settling = 2 encoder counts (0.001 mm)
17-03-18 04:07:38.264 -07 000000447 INF: Y Motor: To move from 75.385 to 59.913 (-15.472 mm) should take 24755 steps, but required 24783 steps (15.489 mm). Slippage = 0.018 mm (0.00%).
17-03-18 04:07:38.264 -07 000000447 INF: Y Motor: FPGA move command 'YMVTO 122701' took 1703 ms, distance = 15.472 mm, average velocity = 9.085 mm/sec
17-03-18 04:07:41.114 -07 000000447 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:07:41.114 -07 000000455 INF: FPGA: Recv YRDPOS 122696
17-03-18 04:07:41.124 -07 000000447 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:07:41.124 -07 000000447 INF: Y Motor: Encoder = 122696 = motor step 95856.3 = 59.9102 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:07:41.154 -07 000000447 INF: Y Motor: After move to 59.912609, error = -0.002453, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:07:41.154 -07 000000447 INF: Y Motor: Position error after settling = -5 encoder counts (-0.002 mm), Delta during settling = -7 counts (-0.003 mm)
17-03-18 04:07:41.154 -07 000000447 INF: Y Motor: Moved to 59.9102 after 4611 ms
17-03-18 04:07:41.154 -07 000000501 INF: Z Motor: EndOfMoveAbsStepped: target = -0.178489 mm (DAC = 38991)
17-03-18 04:07:41.154 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:07:41.154 -07 000000625 INF: FPGA: Recv ZSGSRD 37077
17-03-18 04:07:41.164 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 04:07:41.164 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:07:41.164 -07 000000561 INF: FPGA: Recv ZSGSRD 37072
17-03-18 04:07:41.174 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:07:41.174 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:07:41.174 -07 000000480 INF: FPGA: Recv ZSGSRD 37071
17-03-18 04:07:41.184 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:07:41.184 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:07:41.184 -07 000000579 INF: FPGA: Recv ZSGSRD 37073
17-03-18 04:07:41.194 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:07:41.194 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:07:41.194 -07 000000447 INF: FPGA: Recv ZSGSRD 37077
17-03-18 04:07:41.204 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:07:41.204 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:07:41.204 -07 000000618 INF: FPGA: Recv ZSGSRD 37073
17-03-18 04:07:41.214 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:07:41.214 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:07:41.214 -07 000000455 INF: FPGA: Recv ZSGSRD 37076
17-03-18 04:07:41.224 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:07:41.224 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:07:41.224 -07 000000012 INF: FPGA: Recv ZSGSRD 37070
17-03-18 04:07:41.234 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:07:41.234 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:07:41.234 -07 000000579 INF: FPGA: Recv ZSGSRD 37073
17-03-18 04:07:41.244 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:07:41.244 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:07:41.244 -07 000000512 INF: FPGA: Recv ZSGSRD 37069
17-03-18 04:07:41.254 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:07:41.254 -07 000000501 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:07:41.254 -07 000000608 INF: FPGA: Recv ZPIEZORD 33266
17-03-18 04:07:41.264 -07 000000501 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:07:41.264 -07 000000501 INF: Z Motor: Piezo is near 51.1 V (nominally 0 to 100 V), expect near 59.5 V, since DAC is at 5.950 V. Piezo Error = -8.4 V.
17-03-18 04:07:41.264 -07 000000501 INF: Z Motor: ReadAdcAverage: Commanded Z = -178.5 um, Read 10 ADC samples: Avg = 37073 (-177.6 uncal um), Error = 0.9 uncal um, Median = 37073 (-177.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 37069 (-177.6 uncal um), Max = 37077 (-177.6 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 04:07:41.264 -07 000000501 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37073, posNoise = 4, negNoise = 4
17-03-18 04:07:41.264 -07 000000501 INF: Z Motor: After move to -0.178489, error = 0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:07:41.264 -07 000000501 INF: Z Motor: Settle wait time = 4616 ms, measure time = 105 ms (allowed 150 ms), total time = 4721 ms
17-03-18 04:07:41.264 -07 000000501 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 04:07:41.314 -07 000000501 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 4773 ms
17-03-18 04:07:41.314 -07 000000501 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:07:41.314 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:07:41.314 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:07:41.314 -07 000000611 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:07:41.314 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:07:41.314 -07 000000579 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:07:41.314 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:07:41.314 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:07:41.314 -07 000000611 INF: Camera: sBCa_SetPowerMode(785074288, 1) start.
17-03-18 04:07:41.344 -07 000000611 INF: Camera: sBCa_SetPowerMode(785074288, 1) end. Duration was 23 ms.
17-03-18 04:07:41.344 -07 000000611 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:07:41.344 -07 000000611 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms.
17-03-18 04:07:41.344 -07 000000611 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:07:41.364 -07 000000611 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 04:07:41.364 -07 000000611 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 42 ms.
17-03-18 04:07:41.364 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:07:41.404 -07 000000455 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:07:41.634 -07 000000444 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:07:41.644 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 120. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1718, R2=1787, Total=3505. Warn if over 250 bubbles per interval.
17-03-18 04:07:41.704 -07 000000512 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:07:41.704 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:07:41.704 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:07:41.704 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2335268896, 0x0, 559484976) start.
17-03-18 04:07:41.744 -07 000000618 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:07:41.744 -07 000000618 INF: FPGA: Recv CAMSNAP
17-03-18 04:07:41.744 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 378 ms to get response, and 385 ms overall
17-03-18 04:07:41.834 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2335268896, 0x0, 559484976) end. Duration was 126 ms.
17-03-18 04:07:41.834 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:07:41.834 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 04:07:41.834 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-18 04:07:41.944 -07 000000579 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:07:41.944 -07 000000561 INF: Image SNR check: start
17-03-18 04:07:41.944 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:07:41.954 -07 000000579 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:07:41.954 -07 000000579 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:07:41.954 -07 000000561 INF: Image SNR check: pass  [peak (Max-Min)=132.96]
17-03-18 04:07:41.954 -07 000000561 INF: Autofocus start
17-03-18 04:07:41.954 -07 000000561 INF: MeasureProfile start
17-03-18 04:07:41.964 -07 000000561 INF: MeasureProfile done
17-03-18 04:07:41.964 -07 000000561 INF: X=0  Z correction [um]=-0.0713522
17-03-18 04:07:41.964 -07 000000561 INF: Autofocus finished
17-03-18 04:07:42.154 -07 000000608 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:07:42.154 -07 000000579 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:07:42.154 -07 000000610 INF: ------------ Scan Snapping tile 1 at Y-position 59.91015625, Z-position -0.178488168742639. ----------
17-03-18 04:07:42.154 -07 000000610 INF: Cycle	121	Tile	1	Exposure Settings		A	415	G	200	T	200	C	415
17-03-18 04:07:42.164 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37488, sync = True, waitForSettling = True)
17-03-18 04:07:42.164 -07 000000610 INF: Z Motor: Moving to -0.171609 mm, started at -0.178488 mm, distance = 6.88 um
17-03-18 04:07:42.164 -07 000000610 INF: FPGA: Xmit ZDACW 37488\n [Z Motor]
17-03-18 04:07:42.164 -07 000000611 INF: FPGA: Recv ZDACW
17-03-18 04:07:42.174 -07 000000610 INF: FPGA: 'ZDACW 37488' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:07:42.174 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:07:42.174 -07 000000625 INF: FPGA: Recv ZDACR 37488
17-03-18 04:07:42.184 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:07:42.184 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:07:42.334 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:07:42.334 -07 000000480 INF: FPGA: Recv ZSGSRD 35997
17-03-18 04:07:42.344 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:07:42.344 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:07:42.344 -07 000000512 INF: FPGA: Recv ZSGSRD 36001
17-03-18 04:07:42.354 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:07:42.354 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:07:42.354 -07 000000618 INF: FPGA: Recv ZSGSRD 36005
17-03-18 04:07:42.364 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:07:42.364 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:07:42.364 -07 000000480 INF: FPGA: Recv ZSGSRD 36005
17-03-18 04:07:42.374 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:07:42.374 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:07:42.374 -07 000000447 INF: FPGA: Recv ZSGSRD 36007
17-03-18 04:07:42.384 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:07:42.384 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:07:42.384 -07 000000012 INF: FPGA: Recv ZSGSRD 36001
17-03-18 04:07:42.394 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:07:42.394 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:07:42.394 -07 000000561 INF: FPGA: Recv ZSGSRD 36004
17-03-18 04:07:42.404 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:07:42.404 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:07:42.404 -07 000000561 INF: FPGA: Recv ZSGSRD 36004
17-03-18 04:07:42.414 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:07:42.414 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:07:42.414 -07 000000437 INF: FPGA: Recv ZSGSRD 36004
17-03-18 04:07:42.424 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:07:42.424 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:07:42.424 -07 000000579 INF: FPGA: Recv ZSGSRD 36005
17-03-18 04:07:42.434 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:07:42.434 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:07:42.434 -07 000000590 INF: FPGA: Recv ZPIEZORD 31861
17-03-18 04:07:42.444 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:07:42.444 -07 000000610 INF: Z Motor: Piezo is near 48.1 V (nominally 0 to 100 V), expect near 57.2 V, since DAC is at 5.720 V. Piezo Error = -9.1 V.
17-03-18 04:07:42.444 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.6 um, Read 10 ADC samples: Avg = 36003 (-170.7 uncal um), Error = 0.9 uncal um, Median = 36004 (-170.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35997 (-170.7 uncal um), Max = 36007 (-170.8 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 04:07:42.444 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36003, posNoise = 4, negNoise = 6
17-03-18 04:07:42.444 -07 000000610 INF: Z Motor: After move to -0.171609, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:07:42.444 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 04:07:42.444 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:07:42.444 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:07:42.444 -07 000000455 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:07:42.444 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:07:42.444 -07 000000579 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:07:42.444 -07 000000625 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:07:42.444 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:07:42.444 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:07:42.444 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:07:42.444 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:07:42.444 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:07:42.444 -07 000000625 INF: Camera: sBCa_SetPowerMode(785074704, 1) start.
17-03-18 04:07:42.444 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 04:07:42.444 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:07:42.464 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 04:07:42.464 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 04:07:42.464 -07 000000625 INF: Camera: sBCa_SetPowerMode(785074704, 1) end. Duration was 22 ms.
17-03-18 04:07:42.464 -07 000000625 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:07:42.474 -07 000000625 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 04:07:42.474 -07 000000625 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:07:42.484 -07 000000625 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 13 ms.
17-03-18 04:07:42.484 -07 000000625 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 40 ms.
17-03-18 04:07:42.484 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 415 415 200 200 37665 150\n [Camera]
17-03-18 04:07:42.684 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:07:43.094 -07 000000444 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 121, FrontChillerTemperature: 4.005817,
17-03-18 04:07:43.104 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 607
17-03-18 04:07:43.104 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 607
17-03-18 04:07:43.104 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:07:43.104 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 607
17-03-18 04:07:43.104 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 607
17-03-18 04:07:43.104 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:07:43.244 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:07:43.244 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-18 04:07:43.244 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:07:43.244 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) start.
17-03-18 04:07:43.294 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37665 800
17-03-18 04:07:43.444 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP turning grn on 950
17-03-18 04:07:43.644 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 395 ms.
17-03-18 04:07:43.644 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 04:07:43.644 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:07:43.644 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) end. Duration was 395 ms.
17-03-18 04:07:43.644 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 04:07:43.644 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:07:43.644 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:07:43.644 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 540 ms.
17-03-18 04:07:43.644 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:07:43.644 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1151
17-03-18 04:07:43.654 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1151
17-03-18 04:07:43.654 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:07:43.654 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1151
17-03-18 04:07:43.654 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1151
17-03-18 04:07:43.654 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 545 ms.
17-03-18 04:07:43.654 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:07:43.654 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:07:43.664 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 04:07:43.664 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:07:43.664 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-18 04:07:43.834 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP 1342
17-03-18 04:07:43.834 -07 000000618 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:07:43.834 -07 000000610 INF: FPGA: 'CAMDBLSNAP 415 415 200 200 37665 150' command took 2 ms to send, 1339 ms to get response, and 1349 ms overall
17-03-18 04:07:43.844 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 04:07:43.844 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 2 at Y-position 59.91015625, Z-Position -0.171614261750955. ------
17-03-18 04:07:43.844 -07 000000447 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:07:43.844 -07 000000579 INF: Y Motor: MoveYZ optimized starting. Moving Y to 60.7426 mm, moving Z to -0.17787 mm
17-03-18 04:07:43.844 -07 000000579 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:07:43.854 -07 000000512 INF: Y Motor: Entering MoveAbsStepped (target = 97188 steps, sync = True, waitForSettling = True)
17-03-18 04:07:43.854 -07 000000512 INF: Y Motor: Moving to 60.7426 mm, started at 59.9102 mm, delta = 0.8325 mm
17-03-18 04:07:43.854 -07 000000618 INF: Z Motor: Entering MoveAbsStepped (DAC = 38855, sync = True, waitForSettling = False)
17-03-18 04:07:43.854 -07 000000618 INF: Z Motor: Moving to -0.177867 mm, started at -0.171614 mm, distance = -6.25 um
17-03-18 04:07:43.854 -07 000000608 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:07:43.854 -07 000000447 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 4 ms overall
17-03-18 04:07:43.854 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:07:43.854 -07 000000608 INF: FPGA: Recv YRDPOS 122696
17-03-18 04:07:43.864 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 04:07:43.864 -07 000000512 INF: Y Motor: Encoder = 122696 = motor step 95856.3 = 59.9102 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:07:43.864 -07 000000512 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:07:43.864 -07 000000512 INF: Y Motor: Moving 1332 steps2
17-03-18 04:07:43.864 -07 000000447 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:07:43.874 -07 000000618 INF: FPGA: Xmit ZDACW 38855\n [Z Motor]
17-03-18 04:07:43.874 -07 000000608 INF: FPGA: Recv ZDACW
17-03-18 04:07:43.884 -07 000000618 INF: FPGA: 'ZDACW 38855' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-18 04:07:43.884 -07 000000512 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:07:43.894 -07 000000618 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:07:43.894 -07 000000501 INF: FPGA: Recv ZDACR 38855
17-03-18 04:07:43.904 -07 000000618 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 04:07:43.904 -07 000000618 INF: Z Motor: MoveAbsStepped took 48 ms (did NOT wait for settling yet))
17-03-18 04:07:44.044 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 386 ms.
17-03-18 04:07:44.044 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-18 04:07:44.044 -07 000000444 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:07:44.044 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 389 ms.
17-03-18 04:07:44.044 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-18 04:07:44.044 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:07:44.054 -07 000000444 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:07:44.054 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 04:07:44.054 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:07:44.064 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 406 ms.
17-03-18 04:07:44.064 -07 000000455 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:07:44.064 -07 000000447 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 193 ms to get response, and 210 ms overall
17-03-18 04:07:44.254 -07 000000487 INF: FPGA: Recv YMVTILE
17-03-18 04:07:44.254 -07 000000512 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 04:07:44.294 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:07:44.294 -07 000000608 INF: FPGA: Recv YRDPOS 124380
17-03-18 04:07:44.304 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 04:07:44.304 -07 000000512 INF: Y Motor: Encoder = 124380 = motor step 97171.9 = 60.7324 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:07:44.304 -07 000000512 INF: Y Motor: Position error before settling (table move) = -21 encoder counts (-0.010 mm)
17-03-18 04:07:44.304 -07 000000512 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.832 mm, average velocity = 2.092 mm/sec
17-03-18 04:07:45.254 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:07:45.254 -07 000000012 INF: FPGA: Recv YRDPOS 124380
17-03-18 04:07:45.264 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:07:45.264 -07 000000512 INF: Y Motor: Encoder = 124380 = motor step 97171.9 = 60.7324 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:07:45.294 -07 000000512 INF: Y Motor: After move to 60.742607, error = -0.010185, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:07:45.294 -07 000000512 INF: Y Motor: Position error after settling (table move) = -21 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:07:45.294 -07 000000512 INF: Y Motor: Moved to 60.7324 after 1439 ms (table move)
17-03-18 04:07:45.294 -07 000000579 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177867 mm (DAC = 38855)
17-03-18 04:07:45.294 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:07:45.294 -07 000000480 INF: FPGA: Recv ZSGSRD 36978
17-03-18 04:07:45.304 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 04:07:45.304 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:07:45.304 -07 000000447 INF: FPGA: Recv ZSGSRD 36978
17-03-18 04:07:45.314 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:07:45.314 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:07:45.314 -07 000000625 INF: FPGA: Recv ZSGSRD 36979
17-03-18 04:07:45.324 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:07:45.324 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:07:45.324 -07 000000487 INF: FPGA: Recv ZSGSRD 36980
17-03-18 04:07:45.334 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:07:45.334 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:07:45.334 -07 000000512 INF: FPGA: Recv ZSGSRD 36982
17-03-18 04:07:45.344 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:07:45.344 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:07:45.344 -07 000000447 INF: FPGA: Recv ZSGSRD 36975
17-03-18 04:07:45.354 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:07:45.354 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:07:45.354 -07 000000608 INF: FPGA: Recv ZSGSRD 36981
17-03-18 04:07:45.364 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:07:45.364 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:07:45.364 -07 000000501 INF: FPGA: Recv ZSGSRD 36979
17-03-18 04:07:45.374 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:07:45.374 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:07:45.374 -07 000000437 INF: FPGA: Recv ZSGSRD 36977
17-03-18 04:07:45.384 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:07:45.384 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:07:45.384 -07 000000608 INF: FPGA: Recv ZSGSRD 36980
17-03-18 04:07:45.394 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:07:45.394 -07 000000579 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:07:45.394 -07 000000512 INF: FPGA: Recv ZPIEZORD 33151
17-03-18 04:07:45.404 -07 000000579 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:07:45.404 -07 000000579 INF: Z Motor: Piezo is near 50.8 V (nominally 0 to 100 V), expect near 59.3 V, since DAC is at 5.929 V. Piezo Error = -8.5 V.
17-03-18 04:07:45.404 -07 000000579 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.9 um, Read 10 ADC samples: Avg = 36979 (-177.0 uncal um), Error = 0.9 uncal um, Median = 36979 (-177.0 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 36975 (-177.0 uncal um), Max = 36982 (-177.0 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 04:07:45.404 -07 000000579 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36979, posNoise = 3, negNoise = 4
17-03-18 04:07:45.404 -07 000000579 INF: Z Motor: After move to -0.177867, error = -0.000018, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:07:45.404 -07 000000579 INF: Z Motor: Settle wait time = 1442 ms, measure time = 106 ms (allowed 150 ms), total time = 1548 ms
17-03-18 04:07:45.404 -07 000000579 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-18 04:07:45.454 -07 000000579 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1601 ms
17-03-18 04:07:45.454 -07 000000579 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:07:45.454 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:07:45.454 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:07:45.454 -07 000000437 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:07:45.454 -07 000000012 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:07:45.454 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:07:45.454 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:07:45.454 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:07:45.454 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:07:45.454 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 04:07:45.454 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:07:45.474 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-18 04:07:45.474 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-18 04:07:45.474 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:07:45.524 -07 000000590 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:07:45.824 -07 000000501 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:07:45.824 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:07:45.824 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:07:45.824 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2335268896, 0x0, 559484976) start.
17-03-18 04:07:45.854 -07 000000447 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:07:45.864 -07 000000012 INF: FPGA: Recv CAMSNAP
17-03-18 04:07:45.864 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 380 ms to get response, and 384 ms overall
17-03-18 04:07:45.954 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2335268896, 0x0, 559484976) end. Duration was 127 ms.
17-03-18 04:07:45.954 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:07:45.954 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 04:07:45.954 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-18 04:07:45.964 -07 000000501 INF: Autofocus start
17-03-18 04:07:45.964 -07 000000501 INF: MeasureProfile start
17-03-18 04:07:45.964 -07 000000608 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:07:45.964 -07 000000480 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:07:45.974 -07 000000608 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:07:45.974 -07 000000608 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:07:45.974 -07 000000501 INF: MeasureProfile done
17-03-18 04:07:45.974 -07 000000501 INF: X=16  Z correction [um]=0.01042744
17-03-18 04:07:45.974 -07 000000501 INF: Autofocus finished
17-03-18 04:07:46.174 -07 000000455 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:07:46.174 -07 000000608 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:07:46.174 -07 000000610 INF: ------------ Scan Snapping tile 2 at Y-position 60.732421875, Z-position -0.177884292801313. ----------
17-03-18 04:07:46.174 -07 000000610 INF: Cycle	121	Tile	2	Exposure Settings		A	415	G	200	T	200	C	415
17-03-18 04:07:46.184 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37370, sync = True, waitForSettling = True)
17-03-18 04:07:46.184 -07 000000610 INF: Z Motor: Moving to -0.171069 mm, started at -0.177884 mm, distance = 6.82 um
17-03-18 04:07:46.184 -07 000000610 INF: FPGA: Xmit ZDACW 37370\n [Z Motor]
17-03-18 04:07:46.184 -07 000000447 INF: FPGA: Recv ZDACW
17-03-18 04:07:46.194 -07 000000610 INF: FPGA: 'ZDACW 37370' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:07:46.194 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:07:46.194 -07 000000579 INF: FPGA: Recv ZDACR 37370
17-03-18 04:07:46.204 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:07:46.204 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:07:46.354 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:07:46.354 -07 000000608 INF: FPGA: Recv ZSGSRD 35923
17-03-18 04:07:46.364 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:07:46.364 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:07:46.364 -07 000000444 INF: FPGA: Recv ZSGSRD 35921
17-03-18 04:07:46.374 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:07:46.374 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:07:46.374 -07 000000480 INF: FPGA: Recv ZSGSRD 35926
17-03-18 04:07:46.384 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:07:46.384 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:07:46.384 -07 000000512 INF: FPGA: Recv ZSGSRD 35919
17-03-18 04:07:46.394 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:07:46.394 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:07:46.394 -07 000000618 INF: FPGA: Recv ZSGSRD 35915
17-03-18 04:07:46.404 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:07:46.404 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:07:46.404 -07 000000561 INF: FPGA: Recv ZSGSRD 35925
17-03-18 04:07:46.414 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:07:46.414 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:07:46.414 -07 000000487 INF: FPGA: Recv ZSGSRD 35916
17-03-18 04:07:46.424 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:07:46.424 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:07:46.424 -07 000000012 INF: FPGA: Recv ZSGSRD 35919
17-03-18 04:07:46.434 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:07:46.434 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:07:46.434 -07 000000625 INF: FPGA: Recv ZSGSRD 35919
17-03-18 04:07:46.444 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:07:46.444 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:07:46.444 -07 000000579 INF: FPGA: Recv ZSGSRD 35916
17-03-18 04:07:46.454 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:07:46.454 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:07:46.454 -07 000000444 INF: FPGA: Recv ZPIEZORD 31697
17-03-18 04:07:46.464 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:07:46.464 -07 000000610 INF: Z Motor: Piezo is near 47.7 V (nominally 0 to 100 V), expect near 57.0 V, since DAC is at 5.702 V. Piezo Error = -9.3 V.
17-03-18 04:07:46.464 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.1 um, Read 10 ADC samples: Avg = 35920 (-170.2 uncal um), Error = 0.9 uncal um, Median = 35919 (-170.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35915 (-170.2 uncal um), Max = 35926 (-170.2 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 04:07:46.464 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35920, posNoise = 6, negNoise = 5
17-03-18 04:07:46.464 -07 000000610 INF: Z Motor: After move to -0.171069, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:07:46.464 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-18 04:07:46.464 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:07:46.464 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:07:46.464 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:07:46.464 -07 000000625 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:07:46.464 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:07:46.464 -07 000000579 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:07:46.464 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:07:46.464 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:07:46.464 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:07:46.464 -07 000000625 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:07:46.464 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:07:46.464 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:07:46.474 -07 000000625 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 04:07:46.474 -07 000000625 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:07:46.474 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 04:07:46.474 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:07:46.484 -07 000000625 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 04:07:46.484 -07 000000625 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 04:07:46.484 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 04:07:46.484 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 04:07:46.484 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 415 415 200 200 37547 150\n [Camera]
17-03-18 04:07:46.644 -07 000000437 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:07:46.644 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 120. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1718, R2=1787, Total=3505. Warn if over 250 bubbles per interval.
17-03-18 04:07:46.684 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:07:47.104 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 607
17-03-18 04:07:47.104 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 607
17-03-18 04:07:47.104 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:07:47.104 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:07:47.104 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2349944976, 0x0, 391868352) start.
17-03-18 04:07:47.104 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 607
17-03-18 04:07:47.104 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 607
17-03-18 04:07:47.104 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:07:47.104 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:07:47.104 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 2486767776, 0x0, 418435064) start.
17-03-18 04:07:47.294 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37547 800
17-03-18 04:07:47.444 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning grn on 952
17-03-18 04:07:47.484 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 2486767776, 0x0, 418435064) end. Duration was 380 ms.
17-03-18 04:07:47.484 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-18 04:07:47.484 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:07:47.494 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:07:47.494 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2349944976, 0x0, 391868352) end. Duration was 391 ms.
17-03-18 04:07:47.494 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-18 04:07:47.494 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:07:47.494 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-18 04:07:47.504 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:07:47.504 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 04:07:47.644 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1152
17-03-18 04:07:47.644 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1152
17-03-18 04:07:47.654 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:07:47.774 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1152
17-03-18 04:07:47.774 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1152
17-03-18 04:07:47.774 -07 000000611 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:07:47.774 -07 000000611 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:07:47.774 -07 000000611 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 04:07:47.774 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:07:47.774 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-18 04:07:47.834 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP 1342
17-03-18 04:07:47.834 -07 000000618 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:07:47.834 -07 000000610 INF: FPGA: 'CAMDBLSNAP 415 415 200 200 37547 150' command took 2 ms to send, 1339 ms to get response, and 1350 ms overall
17-03-18 04:07:47.844 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 04:07:47.844 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 3 at Y-position 60.732421875, Z-Position -0.171081052143189. ------
17-03-18 04:07:47.844 -07 000000561 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:07:47.844 -07 000000480 INF: Y Motor: MoveYZ optimized starting. Moving Y to 61.5726 mm, moving Z to -0.17782 mm
17-03-18 04:07:47.844 -07 000000480 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:07:47.844 -07 000000625 INF: Y Motor: Entering MoveAbsStepped (target = 98516 steps, sync = True, waitForSettling = True)
17-03-18 04:07:47.844 -07 000000625 INF: Y Motor: Moving to 61.5726 mm, started at 60.7324 mm, delta = 0.8402 mm
17-03-18 04:07:47.844 -07 000000437 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:07:47.854 -07 000000561 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 04:07:47.854 -07 000000444 INF: Z Motor: Entering MoveAbsStepped (DAC = 38845, sync = True, waitForSettling = False)
17-03-18 04:07:47.854 -07 000000444 INF: Z Motor: Moving to -0.177821 mm, started at -0.171081 mm, distance = -6.74 um
17-03-18 04:07:47.854 -07 000000561 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:07:47.864 -07 000000625 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:07:47.864 -07 000000501 INF: FPGA: Recv YRDPOS 124381
17-03-18 04:07:47.874 -07 000000444 INF: FPGA: Xmit ZDACW 38845\n [Z Motor]
17-03-18 04:07:47.874 -07 000000625 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 21 ms overall
17-03-18 04:07:47.874 -07 000000437 INF: FPGA: Recv ZDACW
17-03-18 04:07:47.874 -07 000000625 INF: Y Motor: Encoder = 124381 = motor step 97172.7 = 60.7329 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:07:47.874 -07 000000625 INF: Y Motor: Last commanded position = 60.7426 mm (97188.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:07:47.874 -07 000000625 INF: Y Motor: Moving 1344 steps-21
17-03-18 04:07:47.884 -07 000000444 INF: FPGA: 'ZDACW 38845' command took 2 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 04:07:47.884 -07 000000444 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:07:47.884 -07 000000437 INF: FPGA: Recv ZDACR 38845
17-03-18 04:07:47.894 -07 000000625 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:07:47.894 -07 000000444 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:07:47.894 -07 000000444 INF: Z Motor: MoveAbsStepped took 40 ms (did NOT wait for settling yet))
17-03-18 04:07:48.054 -07 000000501 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:07:48.054 -07 000000561 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 203 ms overall
17-03-18 04:07:48.174 -07 000000611 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 401 ms.
17-03-18 04:07:48.174 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 397 ms.
17-03-18 04:07:48.174 -07 000000611 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 04:07:48.174 -07 000000611 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:07:48.174 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 04:07:48.174 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:07:48.174 -07 000000611 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:07:48.174 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:07:48.174 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 529 ms.
17-03-18 04:07:48.184 -07 000000611 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-18 04:07:48.264 -07 000000561 INF: FPGA: Recv YMVTILE
17-03-18 04:07:48.264 -07 000000625 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 392 ms overall
17-03-18 04:07:48.314 -07 000000625 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:07:48.324 -07 000000447 INF: FPGA: Recv YRDPOS 126081
17-03-18 04:07:48.324 -07 000000625 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 04:07:48.324 -07 000000625 INF: Y Motor: Encoder = 126081 = motor step 98500.8 = 61.5630 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:07:48.324 -07 000000625 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-18 04:07:48.324 -07 000000625 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 392 ms, distance = 0.840 mm, average velocity = 2.143 mm/sec
17-03-18 04:07:48.584 -07 000000618 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 121, FrontChillerTemperature: 4.014009,
17-03-18 04:07:49.274 -07 000000625 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:07:49.274 -07 000000455 INF: FPGA: Recv YRDPOS 126082
17-03-18 04:07:49.284 -07 000000625 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:07:49.284 -07 000000625 INF: Y Motor: Encoder = 126082 = motor step 98501.6 = 61.5635 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:07:49.314 -07 000000625 INF: Y Motor: After move to 61.572609, error = -0.009132, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:07:49.314 -07 000000625 INF: Y Motor: Position error after settling (table move) = -19 encoder counts (-0.009 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 04:07:49.314 -07 000000625 INF: Y Motor: Moved to 61.5635 after 1462 ms (table move)
17-03-18 04:07:49.314 -07 000000480 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177821 mm (DAC = 38845)
17-03-18 04:07:49.314 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:07:49.314 -07 000000625 INF: FPGA: Recv ZSGSRD 36966
17-03-18 04:07:49.324 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 04:07:49.324 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:07:49.324 -07 000000487 INF: FPGA: Recv ZSGSRD 36967
17-03-18 04:07:49.334 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:07:49.334 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:07:49.334 -07 000000611 INF: FPGA: Recv ZSGSRD 36971
17-03-18 04:07:49.344 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:07:49.344 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:07:49.344 -07 000000501 INF: FPGA: Recv ZSGSRD 36973
17-03-18 04:07:49.354 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:07:49.354 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:07:49.354 -07 000000608 INF: FPGA: Recv ZSGSRD 36973
17-03-18 04:07:49.364 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:07:49.364 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:07:49.364 -07 000000012 INF: FPGA: Recv ZSGSRD 36967
17-03-18 04:07:49.374 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:07:49.374 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:07:49.374 -07 000000455 INF: FPGA: Recv ZSGSRD 36971
17-03-18 04:07:49.384 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:07:49.384 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:07:49.384 -07 000000501 INF: FPGA: Recv ZSGSRD 36971
17-03-18 04:07:49.394 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:07:49.394 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:07:49.394 -07 000000444 INF: FPGA: Recv ZSGSRD 36968
17-03-18 04:07:49.404 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:07:49.404 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:07:49.404 -07 000000579 INF: FPGA: Recv ZSGSRD 36971
17-03-18 04:07:49.414 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:07:49.414 -07 000000480 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:07:49.414 -07 000000447 INF: FPGA: Recv ZPIEZORD 33136
17-03-18 04:07:49.424 -07 000000480 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:07:49.424 -07 000000480 INF: Z Motor: Piezo is near 50.8 V (nominally 0 to 100 V), expect near 59.3 V, since DAC is at 5.927 V. Piezo Error = -8.5 V.
17-03-18 04:07:49.424 -07 000000480 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.8 um, Read 10 ADC samples: Avg = 36970 (-176.9 uncal um), Error = 0.9 uncal um, Median = 36971 (-176.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 36966 (-176.9 uncal um), Max = 36973 (-177.0 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 04:07:49.424 -07 000000480 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36970, posNoise = 3, negNoise = 4
17-03-18 04:07:49.424 -07 000000480 INF: Z Motor: After move to -0.177821, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:07:49.424 -07 000000480 INF: Z Motor: Settle wait time = 1464 ms, measure time = 106 ms (allowed 150 ms), total time = 1570 ms
17-03-18 04:07:49.424 -07 000000480 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-18 04:07:49.474 -07 000000480 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1623 ms
17-03-18 04:07:49.474 -07 000000480 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:07:49.474 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:07:49.474 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:07:49.474 -07 000000579 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:07:49.474 -07 000000437 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:07:49.474 -07 000000512 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:07:49.474 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:07:49.474 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 04:07:49.474 -07 000000512 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:07:49.484 -07 000000512 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 04:07:49.484 -07 000000512 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:07:49.484 -07 000000512 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 04:07:49.484 -07 000000512 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 04:07:49.494 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:07:49.534 -07 000000012 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:07:49.834 -07 000000447 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:07:49.834 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:07:49.834 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:07:49.834 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 675221432, 0x0, 559484976) start.
17-03-18 04:07:49.874 -07 000000611 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:07:49.874 -07 000000501 INF: FPGA: Recv CAMSNAP
17-03-18 04:07:49.874 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 04:07:49.954 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 675221432, 0x0, 559484976) end. Duration was 118 ms.
17-03-18 04:07:49.954 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:07:49.954 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 04:07:49.954 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 121 ms.
17-03-18 04:07:49.974 -07 000000625 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:07:49.974 -07 000000618 INF: Autofocus start
17-03-18 04:07:49.974 -07 000000618 INF: MeasureProfile start
17-03-18 04:07:49.974 -07 000000437 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:07:49.984 -07 000000625 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 04:07:49.984 -07 000000625 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:07:49.984 -07 000000618 INF: MeasureProfile done
17-03-18 04:07:49.984 -07 000000618 INF: X=16  Z correction [um]=0.01042744
17-03-18 04:07:49.984 -07 000000618 INF: Autofocus finished
17-03-18 04:07:50.184 -07 000000579 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:07:50.184 -07 000000625 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:07:50.184 -07 000000610 INF: ------------ Scan Snapping tile 3 at Y-position 61.5634765625, Z-position -0.177826474892038. ----------
17-03-18 04:07:50.184 -07 000000610 INF: Cycle	121	Tile	3	Exposure Settings		A	415	G	200	T	200	C	415
17-03-18 04:07:50.194 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37360, sync = True, waitForSettling = True)
17-03-18 04:07:50.194 -07 000000610 INF: Z Motor: Moving to -0.171023 mm, started at -0.177826 mm, distance = 6.80 um
17-03-18 04:07:50.194 -07 000000610 INF: FPGA: Xmit ZDACW 37360\n [Z Motor]
17-03-18 04:07:50.194 -07 000000447 INF: FPGA: Recv ZDACW
17-03-18 04:07:50.204 -07 000000610 INF: FPGA: 'ZDACW 37360' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 04:07:50.204 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:07:50.204 -07 000000512 INF: FPGA: Recv ZDACR 37360
17-03-18 04:07:50.214 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:07:50.214 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:07:50.364 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:07:50.364 -07 000000512 INF: FPGA: Recv ZSGSRD 35917
17-03-18 04:07:50.374 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:07:50.374 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:07:50.374 -07 000000455 INF: FPGA: Recv ZSGSRD 35919
17-03-18 04:07:50.384 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:07:50.384 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:07:50.384 -07 000000625 INF: FPGA: Recv ZSGSRD 35918
17-03-18 04:07:50.394 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:07:50.394 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:07:50.394 -07 000000611 INF: FPGA: Recv ZSGSRD 35909
17-03-18 04:07:50.404 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:07:50.404 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:07:50.404 -07 000000501 INF: FPGA: Recv ZSGSRD 35916
17-03-18 04:07:50.414 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:07:50.414 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:07:50.414 -07 000000480 INF: FPGA: Recv ZSGSRD 35919
17-03-18 04:07:50.424 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:07:50.424 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:07:50.424 -07 000000618 INF: FPGA: Recv ZSGSRD 35907
17-03-18 04:07:50.434 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:07:50.434 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:07:50.434 -07 000000579 INF: FPGA: Recv ZSGSRD 35908
17-03-18 04:07:50.444 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:07:50.444 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:07:50.444 -07 000000512 INF: FPGA: Recv ZSGSRD 35912
17-03-18 04:07:50.454 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:07:50.454 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:07:50.454 -07 000000480 INF: FPGA: Recv ZSGSRD 35915
17-03-18 04:07:50.464 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:07:50.464 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:07:50.464 -07 000000012 INF: FPGA: Recv ZPIEZORD 31721
17-03-18 04:07:50.474 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:07:50.474 -07 000000610 INF: Z Motor: Piezo is near 47.8 V (nominally 0 to 100 V), expect near 57.0 V, since DAC is at 5.701 V. Piezo Error = -9.2 V.
17-03-18 04:07:50.474 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.0 um, Read 10 ADC samples: Avg = 35914 (-170.2 uncal um), Error = 0.9 uncal um, Median = 35916 (-170.2 uncal um), StdDev = 5 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35907 (-170.1 uncal um), Max = 35919 (-170.2 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 04:07:50.474 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35914, posNoise = 5, negNoise = 7
17-03-18 04:07:50.474 -07 000000610 INF: Z Motor: After move to -0.171023, error = -0.000019, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:07:50.474 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 04:07:50.474 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:07:50.474 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:07:50.474 -07 000000437 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:07:50.474 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:07:50.474 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:07:50.474 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:07:50.474 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:07:50.474 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:07:50.474 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-18 04:07:50.474 -07 000000437 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:07:50.474 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:07:50.474 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:07:50.484 -07 000000437 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 04:07:50.484 -07 000000437 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:07:50.484 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 04:07:50.484 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:07:50.494 -07 000000437 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 13 ms.
17-03-18 04:07:50.494 -07 000000437 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 18 ms.
17-03-18 04:07:50.494 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 12 ms.
17-03-18 04:07:50.494 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 19 ms.
17-03-18 04:07:50.494 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 415 415 200 200 37537 150\n [Camera]
17-03-18 04:07:50.694 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:07:51.114 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 607
17-03-18 04:07:51.114 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 607
17-03-18 04:07:51.114 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:07:51.114 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:07:51.114 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 2339124904, 0x0, 391868352) start.
17-03-18 04:07:51.114 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 607
17-03-18 04:07:51.114 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 607
17-03-18 04:07:51.114 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:07:51.234 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:07:51.234 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 04:07:51.304 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37537 800
17-03-18 04:07:51.454 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP turning grn on 950
17-03-18 04:07:51.504 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 2339124904, 0x0, 391868352) end. Duration was 389 ms.
17-03-18 04:07:51.504 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-18 04:07:51.504 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:07:51.504 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:07:51.504 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-18 04:07:51.624 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 391 ms.
17-03-18 04:07:51.624 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-18 04:07:51.624 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:07:51.624 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-18 04:07:51.634 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 518 ms.
17-03-18 04:07:51.644 -07 000000012 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:07:51.644 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 120. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1718, R2=1787, Total=3505. Warn if over 250 bubbles per interval.
17-03-18 04:07:51.654 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1150
17-03-18 04:07:51.654 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1150
17-03-18 04:07:51.654 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:07:51.654 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1150
17-03-18 04:07:51.654 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1150
17-03-18 04:07:51.664 -07 000000437 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:07:51.664 -07 000000437 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:07:51.664 -07 000000437 INF: Camera: sBCa_ReadImage(785074704, 2374547168, 0x0, 418435064) start.
17-03-18 04:07:51.664 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:07:51.664 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-18 04:07:51.844 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP 1344
17-03-18 04:07:51.844 -07 000000447 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:07:51.844 -07 000000610 INF: FPGA: 'CAMDBLSNAP 415 415 200 200 37537 150' command took 2 ms to send, 1339 ms to get response, and 1351 ms overall
17-03-18 04:07:51.854 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 04:07:51.854 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 4 at Y-position 61.5634765625, Z-Position -0.171042506870338. ------
17-03-18 04:07:51.854 -07 000000625 INF: Y Motor: MoveYZ optimized starting. Moving Y to 62.4026 mm, moving Z to -0.17720 mm
17-03-18 04:07:51.854 -07 000000625 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:07:51.854 -07 000000444 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:07:51.854 -07 000000579 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:07:51.864 -07 000000444 INF: FPGA: 'FOCMRRCUR 80' command took 1 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 04:07:51.864 -07 000000444 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:07:51.864 -07 000000480 INF: Z Motor: Entering MoveAbsStepped (DAC = 38709, sync = True, waitForSettling = False)
17-03-18 04:07:51.864 -07 000000480 INF: Z Motor: Moving to -0.177198 mm, started at -0.171043 mm, distance = -6.16 um
17-03-18 04:07:51.864 -07 000000561 INF: Y Motor: Entering MoveAbsStepped (target = 99844 steps, sync = True, waitForSettling = True)
17-03-18 04:07:51.864 -07 000000561 INF: Y Motor: Moving to 62.4026 mm, started at 61.5635 mm, delta = 0.8391 mm
17-03-18 04:07:51.874 -07 000000480 INF: FPGA: Xmit ZDACW 38709\n [Z Motor]
17-03-18 04:07:51.874 -07 000000608 INF: FPGA: Recv ZDACW
17-03-18 04:07:51.884 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:07:51.884 -07 000000480 INF: FPGA: 'ZDACW 38709' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-18 04:07:51.884 -07 000000579 INF: FPGA: Recv YRDPOS 126082
17-03-18 04:07:51.894 -07 000000480 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:07:51.894 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-18 04:07:51.894 -07 000000561 INF: Y Motor: Encoder = 126082 = motor step 98501.6 = 61.5635 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:07:51.894 -07 000000561 INF: Y Motor: Last commanded position = 61.5726 mm (98516.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:07:51.894 -07 000000561 INF: Y Motor: Moving 1343 steps-20
17-03-18 04:07:51.894 -07 000000579 INF: FPGA: Recv ZDACR 38709
17-03-18 04:07:51.904 -07 000000480 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 04:07:51.904 -07 000000480 INF: Z Motor: MoveAbsStepped took 38 ms (did NOT wait for settling yet))
17-03-18 04:07:51.904 -07 000000561 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:07:52.054 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 396 ms.
17-03-18 04:07:52.054 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 04:07:52.054 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:07:52.064 -07 000000437 INF: Camera: sBCa_ReadImage(785074704, 2374547168, 0x0, 418435064) end. Duration was 400 ms.
17-03-18 04:07:52.064 -07 000000437 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 04:07:52.064 -07 000000437 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:07:52.064 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:07:52.064 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-18 04:07:52.064 -07 000000590 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:07:52.064 -07 000000444 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 194 ms to get response, and 203 ms overall
17-03-18 04:07:52.064 -07 000000437 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:07:52.074 -07 000000437 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-18 04:07:52.274 -07 000000512 INF: FPGA: Recv YMVTILE
17-03-18 04:07:52.274 -07 000000561 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-18 04:07:52.324 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:07:52.324 -07 000000611 INF: FPGA: Recv YRDPOS 127785
17-03-18 04:07:52.334 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 04:07:52.334 -07 000000561 INF: Y Motor: Encoder = 127785 = motor step 99832.0 = 62.3950 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:07:52.334 -07 000000561 INF: Y Motor: Position error before settling (table move) = -16 encoder counts (-0.008 mm)
17-03-18 04:07:52.334 -07 000000561 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.839 mm, average velocity = 2.163 mm/sec
17-03-18 04:07:53.284 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:07:53.284 -07 000000501 INF: FPGA: Recv YRDPOS 127785
17-03-18 04:07:53.294 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:07:53.294 -07 000000561 INF: Y Motor: Encoder = 127785 = motor step 99832.0 = 62.3950 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:07:53.314 -07 000000561 INF: Y Motor: After move to 62.402607, error = -0.007587, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:07:53.314 -07 000000561 INF: Y Motor: Position error after settling (table move) = -16 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:07:53.314 -07 000000561 INF: Y Motor: Moved to 62.3950 after 1457 ms (table move)
17-03-18 04:07:53.324 -07 000000625 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177198 mm (DAC = 38709)
17-03-18 04:07:53.324 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:07:53.324 -07 000000501 INF: FPGA: Recv ZSGSRD 36883
17-03-18 04:07:53.334 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:07:53.334 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:07:53.334 -07 000000487 INF: FPGA: Recv ZSGSRD 36877
17-03-18 04:07:53.344 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:07:53.344 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:07:53.344 -07 000000447 INF: FPGA: Recv ZSGSRD 36874
17-03-18 04:07:53.354 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:07:53.354 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:07:53.354 -07 000000512 INF: FPGA: Recv ZSGSRD 36876
17-03-18 04:07:53.364 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:07:53.364 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:07:53.364 -07 000000561 INF: FPGA: Recv ZSGSRD 36878
17-03-18 04:07:53.374 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:07:53.374 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:07:53.374 -07 000000437 INF: FPGA: Recv ZSGSRD 36865
17-03-18 04:07:53.384 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:07:53.384 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:07:53.384 -07 000000487 INF: FPGA: Recv ZSGSRD 36867
17-03-18 04:07:53.394 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:07:53.394 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:07:53.394 -07 000000012 INF: FPGA: Recv ZSGSRD 36875
17-03-18 04:07:53.404 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:07:53.404 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:07:53.404 -07 000000561 INF: FPGA: Recv ZSGSRD 36878
17-03-18 04:07:53.414 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:07:53.414 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:07:53.414 -07 000000501 INF: FPGA: Recv ZSGSRD 36876
17-03-18 04:07:53.424 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:07:53.424 -07 000000625 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:07:53.424 -07 000000444 INF: FPGA: Recv ZPIEZORD 32994
17-03-18 04:07:53.434 -07 000000625 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:07:53.434 -07 000000625 INF: Z Motor: Piezo is near 50.5 V (nominally 0 to 100 V), expect near 59.1 V, since DAC is at 5.907 V. Piezo Error = -8.6 V.
17-03-18 04:07:53.434 -07 000000625 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.2 um, Read 10 ADC samples: Avg = 36875 (-176.3 uncal um), Error = 0.9 uncal um, Median = 36876 (-176.3 uncal um), StdDev = 5 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 36865 (-176.3 uncal um), Max = 36883 (-176.4 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-18 04:07:53.434 -07 000000625 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36875, posNoise = 8, negNoise = 10
17-03-18 04:07:53.434 -07 000000625 INF: Z Motor: After move to -0.177198, error = -0.000018, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:07:53.434 -07 000000625 INF: Z Motor: Settle wait time = 1462 ms, measure time = 107 ms (allowed 150 ms), total time = 1569 ms
17-03-18 04:07:53.434 -07 000000625 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-18 04:07:53.484 -07 000000625 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1623 ms
17-03-18 04:07:53.484 -07 000000625 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:07:53.484 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:07:53.484 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:07:53.484 -07 000000437 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:07:53.484 -07 000000608 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:07:53.484 -07 000000561 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:07:53.484 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:07:53.484 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:07:53.484 -07 000000561 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:07:53.494 -07 000000561 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 04:07:53.494 -07 000000561 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:07:53.504 -07 000000561 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-18 04:07:53.504 -07 000000561 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-18 04:07:53.504 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:07:53.554 -07 000000579 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:07:53.854 -07 000000487 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:07:53.854 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:07:53.854 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:07:53.854 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 675221432, 0x0, 559484976) start.
17-03-18 04:07:53.884 -07 000000480 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:07:53.894 -07 000000501 INF: FPGA: Recv CAMSNAP
17-03-18 04:07:53.894 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 380 ms to get response, and 384 ms overall
17-03-18 04:07:53.944 -07 000000487 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 121, FrontChillerTemperature: 3.975845,
17-03-18 04:07:53.964 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 675221432, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 04:07:53.974 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:07:53.974 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 04:07:53.974 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 120 ms.
17-03-18 04:07:53.994 -07 000000590 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:07:53.994 -07 000000625 INF: Autofocus start
17-03-18 04:07:53.994 -07 000000625 INF: MeasureProfile start
17-03-18 04:07:53.994 -07 000000455 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:07:54.004 -07 000000590 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 04:07:54.004 -07 000000590 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:07:54.004 -07 000000625 INF: MeasureProfile done
17-03-18 04:07:54.004 -07 000000625 INF: X=32  Z correction [um]=0.09220707
17-03-18 04:07:54.004 -07 000000625 INF: Autofocus finished
17-03-18 04:07:54.204 -07 000000012 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:07:54.204 -07 000000590 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:07:54.214 -07 000000610 INF: ------------ Scan Snapping tile 4 at Y-position 62.39501953125, Z-position -0.17721617473857. ----------
17-03-18 04:07:54.214 -07 000000610 INF: Cycle	121	Tile	4	Exposure Settings		A	415	G	200	T	200	C	415
17-03-18 04:07:54.214 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37242, sync = True, waitForSettling = True)
17-03-18 04:07:54.214 -07 000000610 INF: Z Motor: Moving to -0.170483 mm, started at -0.177216 mm, distance = 6.73 um
17-03-18 04:07:54.214 -07 000000610 INF: FPGA: Xmit ZDACW 37242\n [Z Motor]
17-03-18 04:07:54.214 -07 000000512 INF: FPGA: Recv ZDACW
17-03-18 04:07:54.224 -07 000000610 INF: FPGA: 'ZDACW 37242' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:07:54.224 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:07:54.224 -07 000000611 INF: FPGA: Recv ZDACR 37242
17-03-18 04:07:54.234 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:07:54.234 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:07:54.384 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:07:54.384 -07 000000444 INF: FPGA: Recv ZSGSRD 35830
17-03-18 04:07:54.394 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:07:54.394 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:07:54.394 -07 000000447 INF: FPGA: Recv ZSGSRD 35825
17-03-18 04:07:54.404 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:07:54.414 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:07:54.414 -07 000000512 INF: FPGA: Recv ZSGSRD 35825
17-03-18 04:07:54.424 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 04:07:54.424 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:07:54.424 -07 000000611 INF: FPGA: Recv ZSGSRD 35825
17-03-18 04:07:54.434 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:07:54.434 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:07:54.434 -07 000000447 INF: FPGA: Recv ZSGSRD 35828
17-03-18 04:07:54.444 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:07:54.444 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:07:54.444 -07 000000579 INF: FPGA: Recv ZSGSRD 35831
17-03-18 04:07:54.454 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:07:54.454 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:07:54.454 -07 000000487 INF: FPGA: Recv ZSGSRD 35833
17-03-18 04:07:54.464 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:07:54.464 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:07:54.464 -07 000000480 INF: FPGA: Recv ZSGSRD 35823
17-03-18 04:07:54.474 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:07:54.474 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:07:54.474 -07 000000501 INF: FPGA: Recv ZSGSRD 35832
17-03-18 04:07:54.484 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:07:54.484 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:07:54.484 -07 000000608 INF: FPGA: Recv ZSGSRD 35828
17-03-18 04:07:54.494 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:07:54.494 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:07:54.494 -07 000000012 INF: FPGA: Recv ZPIEZORD 31653
17-03-18 04:07:54.504 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:07:54.504 -07 000000610 INF: Z Motor: Piezo is near 47.6 V (nominally 0 to 100 V), expect near 56.8 V, since DAC is at 5.683 V. Piezo Error = -9.2 V.
17-03-18 04:07:54.504 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.5 um, Read 10 ADC samples: Avg = 35828 (-169.6 uncal um), Error = 0.9 uncal um, Median = 35828 (-169.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35823 (-169.6 uncal um), Max = 35833 (-169.6 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 04:07:54.504 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35828, posNoise = 5, negNoise = 5
17-03-18 04:07:54.504 -07 000000610 INF: Z Motor: After move to -0.170483, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:07:54.504 -07 000000610 INF: Z Motor: MoveAbsStepped took 291 ms)
17-03-18 04:07:54.504 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:07:54.504 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:07:54.504 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:07:54.504 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:07:54.504 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:07:54.504 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:07:54.504 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:07:54.514 -07 000000625 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:07:54.514 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 04:07:54.514 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:07:54.514 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:07:54.514 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:07:54.514 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 04:07:54.514 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:07:54.514 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 04:07:54.514 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:07:54.524 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 11 ms.
17-03-18 04:07:54.524 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 04:07:54.524 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 11 ms.
17-03-18 04:07:54.524 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 17 ms.
17-03-18 04:07:54.534 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 415 415 200 200 37419 150\n [Camera]
17-03-18 04:07:54.734 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:07:55.144 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 607
17-03-18 04:07:55.144 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 607
17-03-18 04:07:55.144 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:07:55.144 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:07:55.144 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 04:07:55.154 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 607
17-03-18 04:07:55.154 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 607
17-03-18 04:07:55.154 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:07:55.154 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:07:55.154 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start.
17-03-18 04:07:55.334 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37419 800
17-03-18 04:07:55.484 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning grn on 950
17-03-18 04:07:55.534 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 388 ms.
17-03-18 04:07:55.534 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-18 04:07:55.534 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:07:55.534 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 386 ms.
17-03-18 04:07:55.534 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-18 04:07:55.534 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:07:55.544 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:07:55.544 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-18 04:07:55.544 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:07:55.554 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 04:07:55.684 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1150
17-03-18 04:07:55.684 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1150
17-03-18 04:07:55.694 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:07:55.694 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:07:55.694 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) start.
17-03-18 04:07:55.694 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1150
17-03-18 04:07:55.694 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1150
17-03-18 04:07:55.694 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:07:55.694 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:07:55.694 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 04:07:55.884 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP 1343
17-03-18 04:07:55.884 -07 000000455 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:07:55.884 -07 000000610 INF: FPGA: 'CAMDBLSNAP 415 415 200 200 37419 150' command took 2 ms to send, 1340 ms to get response, and 1350 ms overall
17-03-18 04:07:55.884 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 04:07:55.884 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 5 at Y-position 62.39501953125, Z-Position -0.170490024626147. ------
17-03-18 04:07:55.884 -07 000000447 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:07:55.884 -07 000000512 INF: Y Motor: MoveYZ optimized starting. Moving Y to 63.2326 mm, moving Z to -0.17714 mm
17-03-18 04:07:55.884 -07 000000512 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:07:55.894 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:07:55.894 -07 000000447 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 04:07:55.894 -07 000000487 INF: Y Motor: Entering MoveAbsStepped (target = 101172 steps, sync = True, waitForSettling = True)
17-03-18 04:07:55.894 -07 000000487 INF: Y Motor: Moving to 63.2326 mm, started at 62.3950 mm, delta = 0.8376 mm
17-03-18 04:07:55.894 -07 000000447 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:07:55.894 -07 000000608 INF: Z Motor: Entering MoveAbsStepped (DAC = 38697, sync = True, waitForSettling = False)
17-03-18 04:07:55.894 -07 000000608 INF: Z Motor: Moving to -0.177144 mm, started at -0.170490 mm, distance = -6.65 um
17-03-18 04:07:55.904 -07 000000608 INF: FPGA: Xmit ZDACW 38697\n [Z Motor]
17-03-18 04:07:55.904 -07 000000618 INF: FPGA: Recv ZDACW
17-03-18 04:07:55.914 -07 000000608 INF: FPGA: 'ZDACW 38697' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-18 04:07:55.914 -07 000000487 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:07:55.914 -07 000000618 INF: FPGA: Recv YRDPOS 127785
17-03-18 04:07:55.924 -07 000000487 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-18 04:07:55.924 -07 000000608 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:07:55.924 -07 000000487 INF: Y Motor: Encoder = 127785 = motor step 99832.0 = 62.3950 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:07:55.924 -07 000000487 INF: Y Motor: Last commanded position = 62.4026 mm (99844.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:07:55.924 -07 000000487 INF: Y Motor: Moving 1340 steps-16
17-03-18 04:07:55.924 -07 000000618 INF: FPGA: Recv ZDACR 38697
17-03-18 04:07:55.934 -07 000000608 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 04:07:55.934 -07 000000608 INF: Z Motor: MoveAbsStepped took 38 ms (did NOT wait for settling yet))
17-03-18 04:07:55.934 -07 000000487 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:07:56.084 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 390 ms.
17-03-18 04:07:56.084 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-18 04:07:56.084 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:07:56.084 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) end. Duration was 395 ms.
17-03-18 04:07:56.084 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 04:07:56.084 -07 000000444 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:07:56.084 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:07:56.094 -07 000000444 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 04:07:56.094 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 04:07:56.094 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 04:07:56.094 -07 000000618 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:07:56.094 -07 000000447 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:07:56.304 -07 000000608 INF: FPGA: Recv YMVTILE
17-03-18 04:07:56.304 -07 000000487 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-18 04:07:56.354 -07 000000487 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:07:56.364 -07 000000501 INF: FPGA: Recv YRDPOS 129482
17-03-18 04:07:56.364 -07 000000487 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 04:07:56.364 -07 000000487 INF: Y Motor: Encoder = 129482 = motor step 101157.8 = 63.2236 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:07:56.364 -07 000000487 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-18 04:07:56.364 -07 000000487 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.838 mm, average velocity = 2.159 mm/sec
17-03-18 04:07:56.644 -07 000000579 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:07:56.644 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 120. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1718, R2=1787, Total=3505. Warn if over 250 bubbles per interval.
17-03-18 04:07:57.314 -07 000000487 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:07:57.314 -07 000000480 INF: FPGA: Recv YRDPOS 129482
17-03-18 04:07:57.324 -07 000000487 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:07:57.324 -07 000000487 INF: Y Motor: Encoder = 129482 = motor step 101157.8 = 63.2236 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:07:57.364 -07 000000487 INF: Y Motor: After move to 63.232609, error = -0.008976, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:07:57.364 -07 000000487 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:07:57.364 -07 000000487 INF: Y Motor: Moved to 63.2236 after 1472 ms (table move)
17-03-18 04:07:57.364 -07 000000512 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177144 mm (DAC = 38697)
17-03-18 04:07:57.364 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:07:57.364 -07 000000611 INF: FPGA: Recv ZSGSRD 36860
17-03-18 04:07:57.374 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 04:07:57.374 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:07:57.374 -07 000000590 INF: FPGA: Recv ZSGSRD 36865
17-03-18 04:07:57.384 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:07:57.384 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:07:57.384 -07 000000625 INF: FPGA: Recv ZSGSRD 36864
17-03-18 04:07:57.394 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:07:57.394 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:07:57.394 -07 000000501 INF: FPGA: Recv ZSGSRD 36869
17-03-18 04:07:57.404 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:07:57.404 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:07:57.404 -07 000000590 INF: FPGA: Recv ZSGSRD 36863
17-03-18 04:07:57.414 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:07:57.414 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:07:57.414 -07 000000579 INF: FPGA: Recv ZSGSRD 36858
17-03-18 04:07:57.424 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:07:57.424 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:07:57.424 -07 000000561 INF: FPGA: Recv ZSGSRD 36859
17-03-18 04:07:57.434 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:07:57.434 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:07:57.434 -07 000000444 INF: FPGA: Recv ZSGSRD 36863
17-03-18 04:07:57.444 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:07:57.444 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:07:57.444 -07 000000480 INF: FPGA: Recv ZSGSRD 36868
17-03-18 04:07:57.454 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:07:57.454 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:07:57.454 -07 000000611 INF: FPGA: Recv ZSGSRD 36870
17-03-18 04:07:57.464 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:07:57.464 -07 000000512 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:07:57.464 -07 000000608 INF: FPGA: Recv ZPIEZORD 33030
17-03-18 04:07:57.474 -07 000000512 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:07:57.474 -07 000000512 INF: Z Motor: Piezo is near 50.6 V (nominally 0 to 100 V), expect near 59.0 V, since DAC is at 5.905 V. Piezo Error = -8.5 V.
17-03-18 04:07:57.474 -07 000000512 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.1 um, Read 10 ADC samples: Avg = 36864 (-176.3 uncal um), Error = 0.9 uncal um, Median = 36864 (-176.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 36858 (-176.2 uncal um), Max = 36870 (-176.3 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 04:07:57.474 -07 000000512 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36864, posNoise = 6, negNoise = 6
17-03-18 04:07:57.474 -07 000000512 INF: Z Motor: After move to -0.177144, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:07:57.474 -07 000000512 INF: Z Motor: Settle wait time = 1474 ms, measure time = 104 ms (allowed 150 ms), total time = 1578 ms
17-03-18 04:07:57.474 -07 000000512 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-18 04:07:57.524 -07 000000512 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1632 ms
17-03-18 04:07:57.524 -07 000000512 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:07:57.524 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:07:57.524 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:07:57.524 -07 000000455 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:07:57.534 -07 000000444 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:07:57.534 -07 000000561 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:07:57.534 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:07:57.534 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 04:07:57.534 -07 000000561 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:07:57.534 -07 000000561 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 04:07:57.534 -07 000000561 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:07:57.544 -07 000000561 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 8 ms.
17-03-18 04:07:57.544 -07 000000561 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-18 04:07:57.544 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:07:57.594 -07 000000579 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:07:57.894 -07 000000561 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:07:57.894 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:07:57.894 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:07:57.894 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1201016592, 0x0, 559484976) start.
17-03-18 04:07:57.924 -07 000000447 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:07:57.934 -07 000000561 INF: FPGA: Recv CAMSNAP
17-03-18 04:07:57.934 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 380 ms to get response, and 385 ms overall
17-03-18 04:07:58.004 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1201016592, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 04:07:58.004 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:07:58.014 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 04:07:58.014 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 04:07:58.034 -07 000000512 INF: Autofocus start
17-03-18 04:07:58.034 -07 000000512 INF: MeasureProfile start
17-03-18 04:07:58.034 -07 000000611 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:07:58.034 -07 000000437 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:07:58.044 -07 000000611 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:07:58.044 -07 000000611 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:07:58.044 -07 000000512 INF: MeasureProfile done
17-03-18 04:07:58.044 -07 000000512 INF: X=-16  Z correction [um]=-0.1496812
17-03-18 04:07:58.044 -07 000000512 INF: Autofocus finished
17-03-18 04:07:58.244 -07 000000590 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:07:58.244 -07 000000611 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:07:58.244 -07 000000610 INF: ------------ Scan Snapping tile 5 at Y-position 63.2236328125, Z-position -0.177145508405011. ----------
17-03-18 04:07:58.244 -07 000000610 INF: Cycle	121	Tile	5	Exposure Settings		A	415	G	200	T	200	C	415
17-03-18 04:07:58.254 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37177, sync = True, waitForSettling = True)
17-03-18 04:07:58.254 -07 000000610 INF: Z Motor: Moving to -0.170185 mm, started at -0.177146 mm, distance = 6.96 um
17-03-18 04:07:58.254 -07 000000610 INF: FPGA: Xmit ZDACW 37177\n [Z Motor]
17-03-18 04:07:58.254 -07 000000444 INF: FPGA: Recv ZDACW
17-03-18 04:07:58.264 -07 000000610 INF: FPGA: 'ZDACW 37177' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:07:58.264 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:07:58.264 -07 000000618 INF: FPGA: Recv ZDACR 37177
17-03-18 04:07:58.274 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:07:58.274 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:07:58.424 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:07:58.424 -07 000000501 INF: FPGA: Recv ZSGSRD 35782
17-03-18 04:07:58.434 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:07:58.434 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:07:58.434 -07 000000444 INF: FPGA: Recv ZSGSRD 35786
17-03-18 04:07:58.444 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:07:58.444 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:07:58.444 -07 000000480 INF: FPGA: Recv ZSGSRD 35778
17-03-18 04:07:58.454 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:07:58.454 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:07:58.454 -07 000000618 INF: FPGA: Recv ZSGSRD 35780
17-03-18 04:07:58.464 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:07:58.464 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:07:58.464 -07 000000512 INF: FPGA: Recv ZSGSRD 35783
17-03-18 04:07:58.474 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:07:58.474 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:07:58.474 -07 000000625 INF: FPGA: Recv ZSGSRD 35779
17-03-18 04:07:58.484 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:07:58.484 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:07:58.484 -07 000000437 INF: FPGA: Recv ZSGSRD 35787
17-03-18 04:07:58.494 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:07:58.494 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:07:58.494 -07 000000455 INF: FPGA: Recv ZSGSRD 35786
17-03-18 04:07:58.504 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:07:58.504 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:07:58.504 -07 000000444 INF: FPGA: Recv ZSGSRD 35778
17-03-18 04:07:58.514 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:07:58.514 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:07:58.514 -07 000000444 INF: FPGA: Recv ZSGSRD 35782
17-03-18 04:07:58.524 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:07:58.524 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:07:58.524 -07 000000608 INF: FPGA: Recv ZPIEZORD 31571
17-03-18 04:07:58.534 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:07:58.534 -07 000000610 INF: Z Motor: Piezo is near 47.4 V (nominally 0 to 100 V), expect near 56.7 V, since DAC is at 5.673 V. Piezo Error = -9.3 V.
17-03-18 04:07:58.534 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.2 um, Read 10 ADC samples: Avg = 35782 (-169.3 uncal um), Error = 0.9 uncal um, Median = 35782 (-169.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35778 (-169.3 uncal um), Max = 35787 (-169.4 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 04:07:58.534 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35782, posNoise = 5, negNoise = 4
17-03-18 04:07:58.534 -07 000000610 INF: Z Motor: After move to -0.170185, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:07:58.534 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-18 04:07:58.534 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:07:58.534 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:07:58.534 -07 000000012 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:07:58.534 -07 000000444 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:07:58.534 -07 000000437 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:07:58.534 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:07:58.534 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:07:58.534 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:07:58.534 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:07:58.534 -07 000000437 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:07:58.534 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:07:58.534 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:07:58.544 -07 000000437 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 04:07:58.544 -07 000000437 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:07:58.544 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 04:07:58.544 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:07:58.544 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 04:07:58.544 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 04:07:58.544 -07 000000437 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 04:07:58.554 -07 000000437 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 04:07:58.554 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 415 415 200 200 37354 150\n [Camera]
17-03-18 04:07:58.754 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:07:59.164 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 607
17-03-18 04:07:59.164 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 607
17-03-18 04:07:59.164 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:07:59.164 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:07:59.164 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 1428998304, 0x0, 391868352) start.
17-03-18 04:07:59.174 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 607
17-03-18 04:07:59.174 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 607
17-03-18 04:07:59.174 -07 000000444 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:07:59.174 -07 000000444 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:07:59.174 -07 000000444 INF: Camera: sBCa_ReadImage(785074704, 1464420568, 0x0, 418435064) start.
17-03-18 04:07:59.304 -07 000000455 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 121, FrontChillerTemperature: 3.981281,
17-03-18 04:07:59.364 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37354 800
17-03-18 04:07:59.504 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning grn on 950
17-03-18 04:07:59.564 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 1428998304, 0x0, 391868352) end. Duration was 399 ms.
17-03-18 04:07:59.564 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 04:07:59.564 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:07:59.564 -07 000000444 INF: Camera: sBCa_ReadImage(785074704, 1464420568, 0x0, 418435064) end. Duration was 398 ms.
17-03-18 04:07:59.564 -07 000000444 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 04:07:59.564 -07 000000444 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:07:59.574 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:07:59.574 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 04:07:59.574 -07 000000444 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:07:59.584 -07 000000444 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-18 04:07:59.714 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1150
17-03-18 04:07:59.714 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1150
17-03-18 04:07:59.714 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:07:59.714 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:07:59.714 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-18 04:07:59.714 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1150
17-03-18 04:07:59.714 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1150
17-03-18 04:07:59.714 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:07:59.714 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:07:59.714 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-18 04:07:59.904 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP 1343
17-03-18 04:07:59.904 -07 000000579 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:07:59.904 -07 000000610 INF: FPGA: 'CAMDBLSNAP 415 415 200 200 37354 150' command took 2 ms to send, 1342 ms to get response, and 1350 ms overall
17-03-18 04:07:59.904 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 04:07:59.904 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 6 at Y-position 63.2236328125, Z-Position -0.170194510867626. ------
17-03-18 04:07:59.904 -07 000000455 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.0626 mm, moving Z to -0.17627 mm
17-03-18 04:07:59.904 -07 000000455 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:07:59.904 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:07:59.914 -07 000000561 INF: Y Motor: Entering MoveAbsStepped (target = 102500 steps, sync = True, waitForSettling = True)
17-03-18 04:07:59.914 -07 000000561 INF: Y Motor: Moving to 64.0626 mm, started at 63.2236 mm, delta = 0.8390 mm
17-03-18 04:07:59.914 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:07:59.914 -07 000000579 INF: Z Motor: Entering MoveAbsStepped (DAC = 38505, sync = True, waitForSettling = False)
17-03-18 04:07:59.914 -07 000000579 INF: Z Motor: Moving to -0.176265 mm, started at -0.170195 mm, distance = -6.07 um
17-03-18 04:07:59.914 -07 000000444 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:07:59.914 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 04:07:59.914 -07 000000625 INF: FPGA: Recv YRDPOS 129482
17-03-18 04:07:59.924 -07 000000501 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:07:59.924 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 04:07:59.924 -07 000000561 INF: Y Motor: Encoder = 129482 = motor step 101157.8 = 63.2236 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:07:59.924 -07 000000561 INF: Y Motor: Last commanded position = 63.2326 mm (101172.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:07:59.924 -07 000000561 INF: Y Motor: Moving 1342 steps-18
17-03-18 04:07:59.934 -07 000000579 INF: FPGA: Xmit ZDACW 38505\n [Z Motor]
17-03-18 04:07:59.934 -07 000000512 INF: FPGA: Recv ZDACW
17-03-18 04:07:59.944 -07 000000579 INF: FPGA: 'ZDACW 38505' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-18 04:07:59.944 -07 000000561 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:07:59.954 -07 000000579 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:07:59.954 -07 000000487 INF: FPGA: Recv ZDACR 38505
17-03-18 04:07:59.964 -07 000000579 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 04:07:59.964 -07 000000579 INF: Z Motor: MoveAbsStepped took 48 ms (did NOT wait for settling yet))
17-03-18 04:08:00.104 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 397 ms.
17-03-18 04:08:00.104 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 04:08:00.104 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:08:00.114 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 397 ms.
17-03-18 04:08:00.114 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-18 04:08:00.114 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:08:00.114 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:08:00.114 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 04:08:00.114 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-18 04:08:00.124 -07 000000590 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:08:00.124 -07 000000501 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 210 ms overall
17-03-18 04:08:00.124 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 408 ms.
17-03-18 04:08:00.314 -07 000000579 INF: FPGA: Recv YMVTILE
17-03-18 04:08:00.314 -07 000000561 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 04:08:00.364 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:08:00.374 -07 000000480 INF: FPGA: Recv YRDPOS 131187
17-03-18 04:08:00.374 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 04:08:00.374 -07 000000561 INF: Y Motor: Encoder = 131187 = motor step 102489.8 = 64.0562 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:08:00.374 -07 000000561 INF: Y Motor: Position error before settling (table move) = -13 encoder counts (-0.006 mm)
17-03-18 04:08:00.374 -07 000000561 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.839 mm, average velocity = 2.108 mm/sec
17-03-18 04:08:01.324 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:08:01.324 -07 000000579 INF: FPGA: Recv YRDPOS 131188
17-03-18 04:08:01.334 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:08:01.334 -07 000000561 INF: Y Motor: Encoder = 131188 = motor step 102490.6 = 64.0566 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:08:01.354 -07 000000561 INF: Y Motor: After move to 64.062607, error = -0.005966, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:08:01.354 -07 000000561 INF: Y Motor: Position error after settling (table move) = -12 encoder counts (-0.006 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 04:08:01.354 -07 000000561 INF: Y Motor: Moved to 64.0566 after 1445 ms (table move)
17-03-18 04:08:01.364 -07 000000455 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176265 mm (DAC = 38505)
17-03-18 04:08:01.364 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:01.364 -07 000000590 INF: FPGA: Recv ZSGSRD 36728
17-03-18 04:08:01.374 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:01.374 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:01.374 -07 000000444 INF: FPGA: Recv ZSGSRD 36728
17-03-18 04:08:01.384 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:01.384 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:01.384 -07 000000012 INF: FPGA: Recv ZSGSRD 36732
17-03-18 04:08:01.394 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:01.394 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:01.394 -07 000000611 INF: FPGA: Recv ZSGSRD 36730
17-03-18 04:08:01.404 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:01.404 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:01.404 -07 000000437 INF: FPGA: Recv ZSGSRD 36729
17-03-18 04:08:01.414 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:01.414 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:01.414 -07 000000512 INF: FPGA: Recv ZSGSRD 36724
17-03-18 04:08:01.424 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:01.424 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:01.424 -07 000000579 INF: FPGA: Recv ZSGSRD 36724
17-03-18 04:08:01.434 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:01.434 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:01.434 -07 000000561 INF: FPGA: Recv ZSGSRD 36727
17-03-18 04:08:01.444 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:01.444 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:01.444 -07 000000437 INF: FPGA: Recv ZSGSRD 36729
17-03-18 04:08:01.454 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:01.454 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:01.454 -07 000000501 INF: FPGA: Recv ZSGSRD 36729
17-03-18 04:08:01.464 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:01.464 -07 000000455 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:08:01.464 -07 000000561 INF: FPGA: Recv ZPIEZORD 32861
17-03-18 04:08:01.474 -07 000000455 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:01.474 -07 000000455 INF: Z Motor: Piezo is near 50.2 V (nominally 0 to 100 V), expect near 58.8 V, since DAC is at 5.875 V. Piezo Error = -8.6 V.
17-03-18 04:08:01.474 -07 000000455 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.3 um, Read 10 ADC samples: Avg = 36728 (-175.4 uncal um), Error = 0.9 uncal um, Median = 36728 (-175.4 uncal um), StdDev = 2 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 36724 (-175.4 uncal um), Max = 36732 (-175.4 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 04:08:01.474 -07 000000455 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36728, posNoise = 4, negNoise = 4
17-03-18 04:08:01.474 -07 000000455 INF: Z Motor: After move to -0.176265, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:08:01.474 -07 000000455 INF: Z Motor: Settle wait time = 1448 ms, measure time = 110 ms (allowed 150 ms), total time = 1558 ms
17-03-18 04:08:01.474 -07 000000455 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-18 04:08:01.514 -07 000000455 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1601 ms
17-03-18 04:08:01.514 -07 000000455 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:08:01.514 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:08:01.514 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:08:01.514 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:08:01.514 -07 000000444 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:08:01.514 -07 000000437 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:08:01.514 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:08:01.514 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:08:01.524 -07 000000444 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:08:01.524 -07 000000444 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 04:08:01.524 -07 000000444 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:08:01.534 -07 000000444 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 04:08:01.534 -07 000000444 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-18 04:08:01.534 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:08:01.574 -07 000000561 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:08:01.644 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:08:01.644 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 120. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1718, R2=1787, Total=3505. Warn if over 250 bubbles per interval.
17-03-18 04:08:01.874 -07 000000437 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:08:01.874 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:08:01.874 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:08:02.004 -07 000000455 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:08:02.004 -07 000000455 INF: FPGA: Recv CAMSNAP
17-03-18 04:08:02.004 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 464 ms to get response, and 470 ms overall
17-03-18 04:08:02.004 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2218332320, 0x0, 559484976) start.
17-03-18 04:08:02.124 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2218332320, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 04:08:02.124 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:08:02.124 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 04:08:02.124 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 242 ms.
17-03-18 04:08:02.204 -07 000000012 INF: Autofocus start
17-03-18 04:08:02.204 -07 000000012 INF: MeasureProfile start
17-03-18 04:08:02.204 -07 000000487 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:08:02.204 -07 000000590 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:08:02.214 -07 000000487 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 04:08:02.214 -07 000000487 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:08:02.214 -07 000000012 INF: MeasureProfile done
17-03-18 04:08:02.214 -07 000000012 INF: X=32  Z correction [um]=0.09220707
17-03-18 04:08:02.214 -07 000000012 INF: Autofocus finished
17-03-18 04:08:02.414 -07 000000512 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:08:02.414 -07 000000487 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:08:02.414 -07 000000610 INF: ------------ Scan Snapping tile 6 at Y-position 64.056640625, Z-position -0.176271815553731. ----------
17-03-18 04:08:02.424 -07 000000610 INF: Cycle	121	Tile	6	Exposure Settings		A	415	G	200	T	200	C	415
17-03-18 04:08:02.424 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37038, sync = True, waitForSettling = True)
17-03-18 04:08:02.424 -07 000000610 INF: Z Motor: Moving to -0.169549 mm, started at -0.176272 mm, distance = 6.72 um
17-03-18 04:08:02.424 -07 000000610 INF: FPGA: Xmit ZDACW 37038\n [Z Motor]
17-03-18 04:08:02.424 -07 000000501 INF: FPGA: Recv ZDACW
17-03-18 04:08:02.434 -07 000000610 INF: FPGA: 'ZDACW 37038' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 04:08:02.434 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:08:02.434 -07 000000561 INF: FPGA: Recv ZDACR 37038
17-03-18 04:08:02.444 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:02.444 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:08:02.594 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:02.594 -07 000000487 INF: FPGA: Recv ZSGSRD 35682
17-03-18 04:08:02.604 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:02.604 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:02.604 -07 000000455 INF: FPGA: Recv ZSGSRD 35683
17-03-18 04:08:02.614 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:02.614 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:02.614 -07 000000480 INF: FPGA: Recv ZSGSRD 35682
17-03-18 04:08:02.624 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:02.624 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:02.624 -07 000000444 INF: FPGA: Recv ZSGSRD 35676
17-03-18 04:08:02.634 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:02.634 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:02.634 -07 000000487 INF: FPGA: Recv ZSGSRD 35677
17-03-18 04:08:02.644 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:02.644 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:02.644 -07 000000455 INF: FPGA: Recv ZSGSRD 35694
17-03-18 04:08:02.654 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:02.654 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:02.654 -07 000000618 INF: FPGA: Recv ZSGSRD 35683
17-03-18 04:08:02.664 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:02.664 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:02.664 -07 000000480 INF: FPGA: Recv ZSGSRD 35681
17-03-18 04:08:02.674 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:02.674 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:02.674 -07 000000012 INF: FPGA: Recv ZSGSRD 35680
17-03-18 04:08:02.684 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:02.684 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:02.684 -07 000000625 INF: FPGA: Recv ZSGSRD 35686
17-03-18 04:08:02.694 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:02.694 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:08:02.694 -07 000000590 INF: FPGA: Recv ZPIEZORD 31451
17-03-18 04:08:02.704 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:02.704 -07 000000610 INF: Z Motor: Piezo is near 47.2 V (nominally 0 to 100 V), expect near 56.5 V, since DAC is at 5.652 V. Piezo Error = -9.3 V.
17-03-18 04:08:02.704 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.5 um, Read 10 ADC samples: Avg = 35682 (-168.7 uncal um), Error = 0.9 uncal um, Median = 35682 (-168.7 uncal um), StdDev = 5 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 35676 (-168.6 uncal um), Max = 35694 (-168.8 uncal um), Pos Noise = 12 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 04:08:02.704 -07 000000610 INF: Z Motor: ADC noise = 12, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35682, posNoise = 12, negNoise = 6
17-03-18 04:08:02.704 -07 000000610 INF: Z Motor: After move to -0.169549, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:08:02.704 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 04:08:02.704 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:08:02.704 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:08:02.704 -07 000000437 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:08:02.704 -07 000000625 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:08:02.704 -07 000000579 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:08:02.704 -07 000000012 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:08:02.704 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:08:02.704 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:08:02.704 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:08:02.704 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:08:02.704 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:08:02.704 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:08:02.714 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 04:08:02.714 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:08:02.714 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 04:08:02.714 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:08:02.724 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 13 ms.
17-03-18 04:08:02.724 -07 000000579 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 18 ms.
17-03-18 04:08:02.724 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 12 ms.
17-03-18 04:08:02.724 -07 000000012 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 19 ms.
17-03-18 04:08:02.724 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 415 415 200 200 37215 150\n [Camera]
17-03-18 04:08:02.934 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP turning red on 194
17-03-18 04:08:03.344 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 607
17-03-18 04:08:03.344 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 607
17-03-18 04:08:03.344 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:08:03.344 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 607
17-03-18 04:08:03.344 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 607
17-03-18 04:08:03.344 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:08:03.344 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:08:03.344 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-18 04:08:03.354 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:08:03.354 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 04:08:03.534 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37215 800
17-03-18 04:08:03.684 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP turning grn on 950
17-03-18 04:08:03.724 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 371 ms.
17-03-18 04:08:03.724 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 371 ms.
17-03-18 04:08:03.724 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:08:03.734 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:08:03.734 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 383 ms.
17-03-18 04:08:03.734 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-18 04:08:03.734 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:08:03.734 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:08:03.734 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-18 04:08:03.734 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-18 04:08:03.884 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1150
17-03-18 04:08:03.884 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1150
17-03-18 04:08:03.884 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:08:03.884 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1150
17-03-18 04:08:03.884 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1150
17-03-18 04:08:03.894 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:08:04.014 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:08:04.014 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-18 04:08:04.014 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:08:04.014 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-18 04:08:04.074 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP 1343
17-03-18 04:08:04.074 -07 000000437 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:08:04.074 -07 000000610 INF: FPGA: 'CAMDBLSNAP 415 415 200 200 37215 150' command took 2 ms to send, 1338 ms to get response, and 1350 ms overall
17-03-18 04:08:04.084 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 04:08:04.084 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 7 at Y-position 64.056640625, Z-Position -0.169552089653449. ------
17-03-18 04:08:04.084 -07 000000590 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:08:04.084 -07 000000608 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.8926 mm, moving Z to -0.17594 mm
17-03-18 04:08:04.084 -07 000000608 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:08:04.084 -07 000000437 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:08:04.084 -07 000000487 INF: Y Motor: Entering MoveAbsStepped (target = 103828 steps, sync = True, waitForSettling = True)
17-03-18 04:08:04.084 -07 000000487 INF: Y Motor: Moving to 64.8926 mm, started at 64.0566 mm, delta = 0.8360 mm
17-03-18 04:08:04.084 -07 000000579 INF: Z Motor: Entering MoveAbsStepped (DAC = 38435, sync = True, waitForSettling = False)
17-03-18 04:08:04.094 -07 000000579 INF: Z Motor: Moving to -0.175944 mm, started at -0.169552 mm, distance = -6.39 um
17-03-18 04:08:04.094 -07 000000579 INF: FPGA: Xmit ZDACW 38435\n [Z Motor]
17-03-18 04:08:04.094 -07 000000590 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 04:08:04.094 -07 000000611 INF: FPGA: Recv ZDACW
17-03-18 04:08:04.104 -07 000000579 INF: FPGA: 'ZDACW 38435' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:04.104 -07 000000579 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:08:04.104 -07 000000437 INF: FPGA: Recv ZDACR 38435
17-03-18 04:08:04.114 -07 000000579 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:04.114 -07 000000487 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:08:04.114 -07 000000579 INF: Z Motor: MoveAbsStepped took 20 ms (did NOT wait for settling yet))
17-03-18 04:08:04.114 -07 000000618 INF: FPGA: Recv YRDPOS 131188
17-03-18 04:08:04.124 -07 000000590 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:08:04.124 -07 000000487 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-18 04:08:04.124 -07 000000487 INF: Y Motor: Encoder = 131188 = motor step 102490.6 = 64.0566 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:08:04.124 -07 000000487 INF: Y Motor: Last commanded position = 64.0626 mm (102500.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:08:04.124 -07 000000487 INF: Y Motor: Moving 1338 steps-13
17-03-18 04:08:04.134 -07 000000487 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:08:04.324 -07 000000444 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:08:04.324 -07 000000590 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 231 ms overall
17-03-18 04:08:04.404 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 397 ms.
17-03-18 04:08:04.404 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-18 04:08:04.404 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:08:04.414 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 397 ms.
17-03-18 04:08:04.414 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 04:08:04.414 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:08:04.414 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:08:04.414 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:08:04.414 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 527 ms.
17-03-18 04:08:04.414 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 528 ms.
17-03-18 04:08:04.504 -07 000000625 INF: FPGA: Recv YMVTILE
17-03-18 04:08:04.504 -07 000000487 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-18 04:08:04.554 -07 000000487 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:08:04.554 -07 000000480 INF: FPGA: Recv YRDPOS 132870
17-03-18 04:08:04.564 -07 000000487 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 04:08:04.564 -07 000000487 INF: Y Motor: Encoder = 132870 = motor step 103804.7 = 64.8779 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:08:04.564 -07 000000487 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-18 04:08:04.564 -07 000000487 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 387 ms, distance = 0.836 mm, average velocity = 2.160 mm/sec
17-03-18 04:08:04.664 -07 000000437 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 121, FrontChillerTemperature: 3.977204,
17-03-18 04:08:05.514 -07 000000487 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:08:05.514 -07 000000447 INF: FPGA: Recv YRDPOS 132871
17-03-18 04:08:05.524 -07 000000487 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:08:05.524 -07 000000487 INF: Y Motor: Encoder = 132871 = motor step 103805.5 = 64.8784 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:08:05.554 -07 000000487 INF: Y Motor: After move to 64.892609, error = -0.014191, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:08:05.554 -07 000000487 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 04:08:05.554 -07 000000487 INF: Y Motor: Moved to 64.8784 after 1461 ms (table move)
17-03-18 04:08:05.554 -07 000000608 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175944 mm (DAC = 38435)
17-03-18 04:08:05.554 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:05.554 -07 000000579 INF: FPGA: Recv ZSGSRD 36683
17-03-18 04:08:05.564 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 04:08:05.564 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:05.564 -07 000000480 INF: FPGA: Recv ZSGSRD 36676
17-03-18 04:08:05.574 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 04:08:05.574 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:05.574 -07 000000012 INF: FPGA: Recv ZSGSRD 36680
17-03-18 04:08:05.584 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:05.584 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:05.584 -07 000000625 INF: FPGA: Recv ZSGSRD 36679
17-03-18 04:08:05.594 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:05.594 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:05.594 -07 000000579 INF: FPGA: Recv ZSGSRD 36682
17-03-18 04:08:05.604 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:05.604 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:05.604 -07 000000012 INF: FPGA: Recv ZSGSRD 36673
17-03-18 04:08:05.614 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:05.614 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:05.614 -07 000000455 INF: FPGA: Recv ZSGSRD 36671
17-03-18 04:08:05.624 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:05.624 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:05.624 -07 000000447 INF: FPGA: Recv ZSGSRD 36672
17-03-18 04:08:05.634 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:05.634 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:05.634 -07 000000561 INF: FPGA: Recv ZSGSRD 36679
17-03-18 04:08:05.644 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:05.644 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:05.644 -07 000000480 INF: FPGA: Recv ZSGSRD 36680
17-03-18 04:08:05.654 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:05.654 -07 000000608 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:08:05.654 -07 000000579 INF: FPGA: Recv ZPIEZORD 32762
17-03-18 04:08:05.664 -07 000000608 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:05.664 -07 000000608 INF: Z Motor: Piezo is near 50.0 V (nominally 0 to 100 V), expect near 58.6 V, since DAC is at 5.865 V. Piezo Error = -8.7 V.
17-03-18 04:08:05.664 -07 000000608 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.9 um, Read 10 ADC samples: Avg = 36678 (-175.1 uncal um), Error = 0.9 uncal um, Median = 36679 (-175.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 36671 (-175.0 uncal um), Max = 36683 (-175.1 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 04:08:05.664 -07 000000608 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36678, posNoise = 5, negNoise = 7
17-03-18 04:08:05.664 -07 000000608 INF: Z Motor: After move to -0.175944, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:08:05.664 -07 000000608 INF: Z Motor: Settle wait time = 1464 ms, measure time = 106 ms (allowed 150 ms), total time = 1570 ms
17-03-18 04:08:05.664 -07 000000608 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-18 04:08:05.714 -07 000000608 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1624 ms
17-03-18 04:08:05.714 -07 000000608 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:08:05.714 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:08:05.714 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:08:05.714 -07 000000480 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:08:05.714 -07 000000561 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:08:05.714 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:08:05.714 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:08:05.714 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 04:08:05.714 -07 000000561 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:08:05.724 -07 000000561 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 04:08:05.724 -07 000000561 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:08:05.724 -07 000000561 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 04:08:05.724 -07 000000561 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-18 04:08:05.734 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:08:05.774 -07 000000455 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:08:06.074 -07 000000012 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:08:06.074 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:08:06.074 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:08:06.074 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2281705520, 0x0, 559484976) start.
17-03-18 04:08:06.114 -07 000000611 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:08:06.114 -07 000000512 INF: FPGA: Recv CAMSNAP
17-03-18 04:08:06.114 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 04:08:06.194 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2281705520, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 04:08:06.194 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:08:06.194 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 04:08:06.194 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 04:08:06.214 -07 000000579 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:08:06.214 -07 000000012 INF: Autofocus start
17-03-18 04:08:06.214 -07 000000012 INF: MeasureProfile start
17-03-18 04:08:06.214 -07 000000437 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:08:06.224 -07 000000579 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 04:08:06.224 -07 000000579 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:08:06.224 -07 000000012 INF: MeasureProfile done
17-03-18 04:08:06.224 -07 000000012 INF: X=16  Z correction [um]=0.01042744
17-03-18 04:08:06.224 -07 000000012 INF: Autofocus finished
17-03-18 04:08:06.424 -07 000000512 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:08:06.424 -07 000000579 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:08:06.424 -07 000000610 INF: ------------ Scan Snapping tile 7 at Y-position 64.87841796875, Z-position -0.175950604946643. ----------
17-03-18 04:08:06.424 -07 000000610 INF: Cycle	121	Tile	7	Exposure Settings		A	415	G	200	T	200	C	415
17-03-18 04:08:06.434 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36950, sync = True, waitForSettling = True)
17-03-18 04:08:06.434 -07 000000610 INF: Z Motor: Moving to -0.169146 mm, started at -0.175951 mm, distance = 6.80 um
17-03-18 04:08:06.434 -07 000000610 INF: FPGA: Xmit ZDACW 36950\n [Z Motor]
17-03-18 04:08:06.434 -07 000000437 INF: FPGA: Recv ZDACW
17-03-18 04:08:06.444 -07 000000610 INF: FPGA: 'ZDACW 36950' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 04:08:06.444 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:08:06.444 -07 000000455 INF: FPGA: Recv ZDACR 36950
17-03-18 04:08:06.454 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:06.454 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:08:06.604 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:06.604 -07 000000444 INF: FPGA: Recv ZSGSRD 35631
17-03-18 04:08:06.614 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:08:06.614 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:06.614 -07 000000561 INF: FPGA: Recv ZSGSRD 35620
17-03-18 04:08:06.624 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:06.624 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:06.624 -07 000000012 INF: FPGA: Recv ZSGSRD 35616
17-03-18 04:08:06.634 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:06.634 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:06.634 -07 000000480 INF: FPGA: Recv ZSGSRD 35617
17-03-18 04:08:06.644 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:06.644 -07 000000618 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:08:06.644 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:06.644 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 120. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1718, R2=1787, Total=3505. Warn if over 250 bubbles per interval.
17-03-18 04:08:06.644 -07 000000444 INF: FPGA: Recv ZSGSRD 35622
17-03-18 04:08:06.654 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:06.654 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:06.654 -07 000000561 INF: FPGA: Recv ZSGSRD 35624
17-03-18 04:08:06.664 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:06.664 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:06.664 -07 000000487 INF: FPGA: Recv ZSGSRD 35615
17-03-18 04:08:06.674 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:06.674 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:06.674 -07 000000590 INF: FPGA: Recv ZSGSRD 35621
17-03-18 04:08:06.684 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:06.684 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:06.684 -07 000000608 INF: FPGA: Recv ZSGSRD 35624
17-03-18 04:08:06.694 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:06.694 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:06.694 -07 000000625 INF: FPGA: Recv ZSGSRD 35618
17-03-18 04:08:06.704 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:06.704 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:08:06.704 -07 000000501 INF: FPGA: Recv ZPIEZORD 31361
17-03-18 04:08:06.714 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:06.714 -07 000000610 INF: Z Motor: Piezo is near 47.0 V (nominally 0 to 100 V), expect near 56.4 V, since DAC is at 5.638 V. Piezo Error = -9.4 V.
17-03-18 04:08:06.714 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.1 um, Read 10 ADC samples: Avg = 35621 (-168.3 uncal um), Error = 0.9 uncal um, Median = 35620 (-168.3 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 35615 (-168.2 uncal um), Max = 35631 (-168.4 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 04:08:06.714 -07 000000610 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35621, posNoise = 10, negNoise = 6
17-03-18 04:08:06.714 -07 000000610 INF: Z Motor: After move to -0.169146, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:08:06.714 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 04:08:06.714 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:08:06.714 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:08:06.714 -07 000000437 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:08:06.714 -07 000000625 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:08:06.714 -07 000000447 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:08:06.714 -07 000000611 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:08:06.714 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:08:06.714 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:08:06.714 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 04:08:06.714 -07 000000611 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:08:06.714 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-18 04:08:06.714 -07 000000447 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:08:06.724 -07 000000611 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 04:08:06.724 -07 000000611 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:08:06.724 -07 000000447 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 04:08:06.724 -07 000000447 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:08:06.734 -07 000000447 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 04:08:06.734 -07 000000447 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 04:08:06.734 -07 000000611 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-18 04:08:06.734 -07 000000611 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 04:08:06.734 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 415 415 200 200 37127 150\n [Camera]
17-03-18 04:08:06.934 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:08:07.354 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 607
17-03-18 04:08:07.354 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 607
17-03-18 04:08:07.354 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:08:07.354 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 607
17-03-18 04:08:07.354 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 607
17-03-18 04:08:07.354 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:08:07.354 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:08:07.354 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 04:08:07.354 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:08:07.354 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 04:08:07.544 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37127 800
17-03-18 04:08:07.694 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP turning grn on 950
17-03-18 04:08:07.754 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 396 ms.
17-03-18 04:08:07.754 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 04:08:07.754 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:08:07.754 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 399 ms.
17-03-18 04:08:07.754 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 04:08:07.754 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:08:07.754 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:08:07.754 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 04:08:07.764 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 04:08:07.764 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-18 04:08:07.894 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1150
17-03-18 04:08:07.894 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1150
17-03-18 04:08:07.894 -07 000000487 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:08:07.894 -07 000000487 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:08:07.894 -07 000000487 INF: Camera: sBCa_ReadImage(785074288, 2334719600, 0x0, 391868352) start.
17-03-18 04:08:07.894 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1150
17-03-18 04:08:07.894 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1150
17-03-18 04:08:07.894 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:08:07.894 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:08:07.894 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 2370141864, 0x0, 418435064) start.
17-03-18 04:08:08.084 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP 1342
17-03-18 04:08:08.084 -07 000000437 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:08:08.084 -07 000000610 INF: FPGA: 'CAMDBLSNAP 415 415 200 200 37127 150' command took 2 ms to send, 1344 ms to get response, and 1350 ms overall
17-03-18 04:08:08.084 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 04:08:08.084 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 8 at Y-position 64.87841796875, Z-Position -0.169160212712802. ------
17-03-18 04:08:08.084 -07 000000625 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:08:08.084 -07 000000608 INF: Y Motor: MoveYZ optimized starting. Moving Y to 65.7226 mm, moving Z to -0.17577 mm
17-03-18 04:08:08.084 -07 000000608 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:08:08.094 -07 000000512 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:08:08.094 -07 000000625 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 4 ms to get response, and 5 ms overall
17-03-18 04:08:08.094 -07 000000590 INF: Y Motor: Entering MoveAbsStepped (target = 105156 steps, sync = True, waitForSettling = True)
17-03-18 04:08:08.094 -07 000000590 INF: Y Motor: Moving to 65.7226 mm, started at 64.8784 mm, delta = 0.8442 mm
17-03-18 04:08:08.094 -07 000000444 INF: Z Motor: Entering MoveAbsStepped (DAC = 38397, sync = True, waitForSettling = False)
17-03-18 04:08:08.094 -07 000000444 INF: Z Motor: Moving to -0.175770 mm, started at -0.169160 mm, distance = -6.61 um
17-03-18 04:08:08.094 -07 000000625 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:08:08.104 -07 000000590 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:08:08.104 -07 000000480 INF: FPGA: Recv YRDPOS 132871
17-03-18 04:08:08.114 -07 000000590 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-18 04:08:08.114 -07 000000444 INF: FPGA: Xmit ZDACW 38397\n [Z Motor]
17-03-18 04:08:08.114 -07 000000590 INF: Y Motor: Encoder = 132871 = motor step 103805.5 = 64.8784 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:08:08.114 -07 000000590 INF: Y Motor: Last commanded position = 64.8926 mm (103828.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:08:08.114 -07 000000590 INF: Y Motor: Moving 1351 steps-30
17-03-18 04:08:08.114 -07 000000512 INF: FPGA: Recv ZDACW
17-03-18 04:08:08.124 -07 000000444 INF: FPGA: 'ZDACW 38397' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-18 04:08:08.124 -07 000000444 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:08:08.124 -07 000000512 INF: FPGA: Recv ZDACR 38397
17-03-18 04:08:08.134 -07 000000444 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:08.134 -07 000000444 INF: Z Motor: MoveAbsStepped took 35 ms (did NOT wait for settling yet))
17-03-18 04:08:08.134 -07 000000590 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:08:08.294 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 2370141864, 0x0, 418435064) end. Duration was 396 ms.
17-03-18 04:08:08.294 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-18 04:08:08.294 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:08:08.294 -07 000000487 INF: Camera: sBCa_ReadImage(785074288, 2334719600, 0x0, 391868352) end. Duration was 401 ms.
17-03-18 04:08:08.294 -07 000000487 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 04:08:08.294 -07 000000487 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:08:08.294 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:08:08.294 -07 000000444 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:08:08.294 -07 000000625 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 198 ms to get response, and 203 ms overall
17-03-18 04:08:08.304 -07 000000487 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 04:08:08.304 -07 000000487 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 408 ms.
17-03-18 04:08:08.304 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 408 ms.
17-03-18 04:08:08.504 -07 000000455 INF: FPGA: Recv YMVTILE
17-03-18 04:08:08.504 -07 000000590 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 04:08:08.554 -07 000000590 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:08:08.564 -07 000000487 INF: FPGA: Recv YRDPOS 134581
17-03-18 04:08:08.564 -07 000000590 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 04:08:08.564 -07 000000590 INF: Y Motor: Encoder = 134581 = motor step 105141.4 = 65.7134 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:08:08.564 -07 000000590 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm)
17-03-18 04:08:08.564 -07 000000590 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.844 mm, average velocity = 2.126 mm/sec
17-03-18 04:08:09.514 -07 000000590 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:08:09.514 -07 000000480 INF: FPGA: Recv YRDPOS 134581
17-03-18 04:08:09.524 -07 000000590 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:08:09.524 -07 000000590 INF: Y Motor: Encoder = 134581 = motor step 105141.4 = 65.7134 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:08:09.554 -07 000000590 INF: Y Motor: After move to 65.722610, error = -0.009232, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:08:09.554 -07 000000590 INF: Y Motor: Position error after settling (table move) = -19 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:08:09.554 -07 000000590 INF: Y Motor: Moved to 65.7134 after 1462 ms (table move)
17-03-18 04:08:09.564 -07 000000608 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175770 mm (DAC = 38397)
17-03-18 04:08:09.564 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:09.564 -07 000000437 INF: FPGA: Recv ZSGSRD 36658
17-03-18 04:08:09.574 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:09.574 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:09.574 -07 000000487 INF: FPGA: Recv ZSGSRD 36655
17-03-18 04:08:09.584 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:09.584 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:09.584 -07 000000618 INF: FPGA: Recv ZSGSRD 36653
17-03-18 04:08:09.594 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:09.594 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:09.594 -07 000000590 INF: FPGA: Recv ZSGSRD 36650
17-03-18 04:08:09.604 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:09.604 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:09.604 -07 000000012 INF: FPGA: Recv ZSGSRD 36651
17-03-18 04:08:09.614 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:09.614 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:09.614 -07 000000561 INF: FPGA: Recv ZSGSRD 36643
17-03-18 04:08:09.624 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:09.624 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:09.624 -07 000000444 INF: FPGA: Recv ZSGSRD 36651
17-03-18 04:08:09.634 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:09.634 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:09.634 -07 000000590 INF: FPGA: Recv ZSGSRD 36654
17-03-18 04:08:09.644 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:09.644 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:09.644 -07 000000012 INF: FPGA: Recv ZSGSRD 36655
17-03-18 04:08:09.654 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:09.654 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:09.654 -07 000000561 INF: FPGA: Recv ZSGSRD 36656
17-03-18 04:08:09.664 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:09.664 -07 000000608 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:08:09.664 -07 000000444 INF: FPGA: Recv ZPIEZORD 32731
17-03-18 04:08:09.674 -07 000000608 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:09.674 -07 000000608 INF: Z Motor: Piezo is near 49.9 V (nominally 0 to 100 V), expect near 58.6 V, since DAC is at 5.859 V. Piezo Error = -8.7 V.
17-03-18 04:08:09.674 -07 000000608 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.8 um, Read 10 ADC samples: Avg = 36653 (-174.9 uncal um), Error = 0.9 uncal um, Median = 36654 (-174.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 36643 (-174.8 uncal um), Max = 36658 (-174.9 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-18 04:08:09.674 -07 000000608 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36653, posNoise = 5, negNoise = 10
17-03-18 04:08:09.674 -07 000000608 INF: Z Motor: After move to -0.175770, error = -0.000020, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:08:09.674 -07 000000608 INF: Z Motor: Settle wait time = 1464 ms, measure time = 111 ms (allowed 150 ms), total time = 1575 ms
17-03-18 04:08:09.674 -07 000000608 INF: Z Motor: Waiting extra 39 ms after reading position to reach expected total of 150 ms
17-03-18 04:08:09.714 -07 000000608 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1621 ms
17-03-18 04:08:09.714 -07 000000608 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:08:09.714 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:08:09.714 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:08:09.714 -07 000000579 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:08:09.714 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:08:09.714 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:08:09.714 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:08:09.724 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 04:08:09.724 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:08:09.724 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 04:08:09.724 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:08:09.734 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 04:08:09.734 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 04:08:09.734 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:08:09.774 -07 000000618 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:08:10.024 -07 000000487 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 121, FrontChillerTemperature: 4.000345,
17-03-18 04:08:10.074 -07 000000487 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:08:10.074 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:08:10.074 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:08:10.074 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2300786904, 0x0, 559484976) start.
17-03-18 04:08:10.114 -07 000000625 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:08:10.114 -07 000000447 INF: FPGA: Recv CAMSNAP
17-03-18 04:08:10.114 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 384 ms overall
17-03-18 04:08:10.194 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2300786904, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 04:08:10.194 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:08:10.194 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 04:08:10.194 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 116 ms.
17-03-18 04:08:10.214 -07 000000590 INF: Autofocus start
17-03-18 04:08:10.214 -07 000000590 INF: MeasureProfile start
17-03-18 04:08:10.214 -07 000000561 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:08:10.214 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:08:10.224 -07 000000561 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 04:08:10.224 -07 000000561 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:08:10.234 -07 000000590 INF: MeasureProfile done
17-03-18 04:08:10.234 -07 000000590 INF: X=-16  Z correction [um]=-0.1496812
17-03-18 04:08:10.234 -07 000000590 INF: Autofocus finished
17-03-18 04:08:10.424 -07 000000437 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:08:10.424 -07 000000561 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 202 ms overall
17-03-18 04:08:10.424 -07 000000610 INF: ------------ Scan Snapping tile 8 at Y-position 65.71337890625, Z-position -0.175789999643099. ----------
17-03-18 04:08:10.424 -07 000000610 INF: Cycle	121	Tile	8	Exposure Settings		A	415	G	200	T	200	C	415
17-03-18 04:08:10.434 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36877, sync = True, waitForSettling = True)
17-03-18 04:08:10.434 -07 000000610 INF: Z Motor: Moving to -0.168812 mm, started at -0.175790 mm, distance = 6.98 um
17-03-18 04:08:10.434 -07 000000610 INF: FPGA: Xmit ZDACW 36877\n [Z Motor]
17-03-18 04:08:10.434 -07 000000590 INF: FPGA: Recv ZDACW
17-03-18 04:08:10.444 -07 000000610 INF: FPGA: 'ZDACW 36877' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 04:08:10.454 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:08:10.454 -07 000000012 INF: FPGA: Recv ZDACR 36877
17-03-18 04:08:10.464 -07 000000610 INF: FPGA: 'ZDACR' command took 2 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 04:08:10.464 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:08:10.614 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:10.614 -07 000000444 INF: FPGA: Recv ZSGSRD 35568
17-03-18 04:08:10.624 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:08:10.624 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:10.624 -07 000000512 INF: FPGA: Recv ZSGSRD 35569
17-03-18 04:08:10.634 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:10.634 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:10.634 -07 000000625 INF: FPGA: Recv ZSGSRD 35564
17-03-18 04:08:10.644 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:10.644 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:10.644 -07 000000487 INF: FPGA: Recv ZSGSRD 35566
17-03-18 04:08:10.654 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:10.654 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:10.654 -07 000000455 INF: FPGA: Recv ZSGSRD 35569
17-03-18 04:08:10.664 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:10.664 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:10.664 -07 000000447 INF: FPGA: Recv ZSGSRD 35571
17-03-18 04:08:10.674 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:10.674 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:10.674 -07 000000501 INF: FPGA: Recv ZSGSRD 35564
17-03-18 04:08:10.684 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:10.684 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:10.684 -07 000000618 INF: FPGA: Recv ZSGSRD 35569
17-03-18 04:08:10.694 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:10.694 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:10.694 -07 000000480 INF: FPGA: Recv ZSGSRD 35572
17-03-18 04:08:10.704 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:10.704 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:10.704 -07 000000579 INF: FPGA: Recv ZSGSRD 35565
17-03-18 04:08:10.714 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:10.714 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:08:10.714 -07 000000625 INF: FPGA: Recv ZPIEZORD 31290
17-03-18 04:08:10.724 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:10.724 -07 000000610 INF: Z Motor: Piezo is near 46.8 V (nominally 0 to 100 V), expect near 56.3 V, since DAC is at 5.627 V. Piezo Error = -9.4 V.
17-03-18 04:08:10.724 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.8 um, Read 10 ADC samples: Avg = 35568 (-167.9 uncal um), Error = 0.9 uncal um, Median = 35568 (-167.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35564 (-167.9 uncal um), Max = 35572 (-168.0 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 04:08:10.724 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35568, posNoise = 4, negNoise = 4
17-03-18 04:08:10.724 -07 000000610 INF: Z Motor: After move to -0.168812, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:08:10.724 -07 000000610 INF: Z Motor: MoveAbsStepped took 289 ms)
17-03-18 04:08:10.724 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:08:10.724 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:08:10.724 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:08:10.724 -07 000000579 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:08:10.724 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:08:10.724 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:08:10.724 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:08:10.724 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:08:10.724 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:08:10.724 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:08:10.724 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-18 04:08:10.724 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:08:10.724 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 04:08:10.724 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:08:10.734 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 04:08:10.734 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:08:10.744 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-18 04:08:10.744 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 04:08:10.744 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-18 04:08:10.744 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 04:08:10.744 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 415 415 200 200 37054 150\n [Camera]
17-03-18 04:08:10.944 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:08:11.364 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 607
17-03-18 04:08:11.364 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 607
17-03-18 04:08:11.364 -07 000000611 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:08:11.364 -07 000000611 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:08:11.364 -07 000000611 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 04:08:11.364 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 607
17-03-18 04:08:11.364 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 607
17-03-18 04:08:11.364 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:08:11.364 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:08:11.364 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start.
17-03-18 04:08:11.554 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37054 800
17-03-18 04:08:11.644 -07 000000447 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:08:11.644 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 120. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1718, R2=1787, Total=3505. Warn if over 250 bubbles per interval.
17-03-18 04:08:11.704 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP turning grn on 950
17-03-18 04:08:11.754 -07 000000611 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 394 ms.
17-03-18 04:08:11.754 -07 000000611 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-18 04:08:11.754 -07 000000611 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:08:11.754 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 392 ms.
17-03-18 04:08:11.754 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-18 04:08:11.754 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:08:11.764 -07 000000611 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:08:11.764 -07 000000611 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 04:08:11.764 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:08:11.774 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 407 ms.
17-03-18 04:08:11.904 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1150
17-03-18 04:08:11.904 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1150
17-03-18 04:08:11.904 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:08:11.904 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:08:11.904 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) start.
17-03-18 04:08:11.904 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1150
17-03-18 04:08:11.904 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1150
17-03-18 04:08:11.914 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:08:11.914 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:08:11.914 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 04:08:12.094 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP 1343
17-03-18 04:08:12.094 -07 000000487 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:08:12.094 -07 000000610 INF: FPGA: 'CAMDBLSNAP 415 415 200 200 37054 150' command took 2 ms to send, 1347 ms to get response, and 1353 ms overall
17-03-18 04:08:12.094 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 04:08:12.104 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 9 at Y-position 65.71337890625, Z-Position -0.168819729469289. ------
17-03-18 04:08:12.104 -07 000000480 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:08:12.104 -07 000000590 INF: Y Motor: MoveYZ optimized starting. Moving Y to 66.5526 mm, moving Z to -0.17532 mm
17-03-18 04:08:12.104 -07 000000590 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:08:12.104 -07 000000611 INF: Y Motor: Entering MoveAbsStepped (target = 106484 steps, sync = True, waitForSettling = True)
17-03-18 04:08:12.104 -07 000000611 INF: Y Motor: Moving to 66.5526 mm, started at 65.7134 mm, delta = 0.8392 mm
17-03-18 04:08:12.104 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:08:12.104 -07 000000625 INF: Z Motor: Entering MoveAbsStepped (DAC = 38298, sync = True, waitForSettling = False)
17-03-18 04:08:12.104 -07 000000625 INF: Z Motor: Moving to -0.175317 mm, started at -0.168820 mm, distance = -6.50 um
17-03-18 04:08:12.114 -07 000000480 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:08:12.114 -07 000000611 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:08:12.114 -07 000000618 INF: FPGA: Recv YRDPOS 134581
17-03-18 04:08:12.124 -07 000000625 INF: FPGA: Xmit ZDACW 38298\n [Z Motor]
17-03-18 04:08:12.124 -07 000000611 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-18 04:08:12.124 -07 000000611 INF: Y Motor: Encoder = 134581 = motor step 105141.4 = 65.7134 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:08:12.124 -07 000000611 INF: Y Motor: Last commanded position = 65.7226 mm (105156.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:08:12.124 -07 000000611 INF: Y Motor: Moving 1343 steps-19
17-03-18 04:08:12.124 -07 000000447 INF: FPGA: Recv ZDACW
17-03-18 04:08:12.134 -07 000000480 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:08:12.134 -07 000000625 INF: FPGA: 'ZDACW 38298' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-18 04:08:12.144 -07 000000611 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:08:12.154 -07 000000625 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:08:12.154 -07 000000444 INF: FPGA: Recv ZDACR 38298
17-03-18 04:08:12.164 -07 000000625 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-18 04:08:12.164 -07 000000625 INF: Z Motor: MoveAbsStepped took 53 ms (did NOT wait for settling yet))
17-03-18 04:08:12.304 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) end. Duration was 400 ms.
17-03-18 04:08:12.304 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 04:08:12.304 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:08:12.314 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 401 ms.
17-03-18 04:08:12.314 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 04:08:12.314 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:08:12.314 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 04:08:12.314 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 408 ms.
17-03-18 04:08:12.314 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:08:12.324 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-18 04:08:12.334 -07 000000444 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:08:12.334 -07 000000480 INF: FPGA: 'FOCMRRFOC' command took 3 ms to send, 195 ms to get response, and 225 ms overall
17-03-18 04:08:12.514 -07 000000012 INF: FPGA: Recv YMVTILE
17-03-18 04:08:12.514 -07 000000611 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 04:08:12.564 -07 000000611 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:08:12.574 -07 000000579 INF: FPGA: Recv YRDPOS 136270
17-03-18 04:08:12.574 -07 000000611 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 04:08:12.574 -07 000000611 INF: Y Motor: Encoder = 136270 = motor step 106460.9 = 66.5381 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:08:12.574 -07 000000611 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-18 04:08:12.574 -07 000000611 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.839 mm, average velocity = 2.114 mm/sec
17-03-18 04:08:13.524 -07 000000611 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:08:13.524 -07 000000608 INF: FPGA: Recv YRDPOS 136270
17-03-18 04:08:13.534 -07 000000611 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:08:13.534 -07 000000611 INF: Y Motor: Encoder = 136270 = motor step 106460.9 = 66.5381 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:08:13.564 -07 000000611 INF: Y Motor: After move to 66.552605, error = -0.014519, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:08:13.564 -07 000000611 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:08:13.564 -07 000000611 INF: Y Motor: Moved to 66.5381 after 1457 ms (table move)
17-03-18 04:08:13.564 -07 000000590 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175317 mm (DAC = 38298)
17-03-18 04:08:13.564 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:13.564 -07 000000625 INF: FPGA: Recv ZSGSRD 36582
17-03-18 04:08:13.574 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 04:08:13.574 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:13.574 -07 000000447 INF: FPGA: Recv ZSGSRD 36585
17-03-18 04:08:13.584 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:13.584 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:13.584 -07 000000012 INF: FPGA: Recv ZSGSRD 36585
17-03-18 04:08:13.594 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:13.594 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:13.594 -07 000000579 INF: FPGA: Recv ZSGSRD 36583
17-03-18 04:08:13.604 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 04:08:13.604 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:13.604 -07 000000618 INF: FPGA: Recv ZSGSRD 36578
17-03-18 04:08:13.614 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:13.614 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:13.614 -07 000000487 INF: FPGA: Recv ZSGSRD 36582
17-03-18 04:08:13.624 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:13.624 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:13.624 -07 000000437 INF: FPGA: Recv ZSGSRD 36576
17-03-18 04:08:13.634 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:13.634 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:13.634 -07 000000512 INF: FPGA: Recv ZSGSRD 36576
17-03-18 04:08:13.644 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:13.644 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:13.644 -07 000000618 INF: FPGA: Recv ZSGSRD 36584
17-03-18 04:08:13.654 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:13.654 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:13.654 -07 000000487 INF: FPGA: Recv ZSGSRD 36579
17-03-18 04:08:13.664 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:13.664 -07 000000590 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:08:13.664 -07 000000437 INF: FPGA: Recv ZPIEZORD 32670
17-03-18 04:08:13.674 -07 000000590 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:13.674 -07 000000590 INF: Z Motor: Piezo is near 49.8 V (nominally 0 to 100 V), expect near 58.4 V, since DAC is at 5.844 V. Piezo Error = -8.6 V.
17-03-18 04:08:13.674 -07 000000590 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.3 um, Read 10 ADC samples: Avg = 36581 (-174.4 uncal um), Error = 0.9 uncal um, Median = 36582 (-174.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 36576 (-174.4 uncal um), Max = 36585 (-174.5 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 04:08:13.674 -07 000000590 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36581, posNoise = 4, negNoise = 5
17-03-18 04:08:13.674 -07 000000590 INF: Z Motor: After move to -0.175317, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:08:13.674 -07 000000590 INF: Z Motor: Settle wait time = 1460 ms, measure time = 104 ms (allowed 150 ms), total time = 1564 ms
17-03-18 04:08:13.674 -07 000000590 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-18 04:08:13.724 -07 000000590 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1616 ms
17-03-18 04:08:13.724 -07 000000590 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:08:13.724 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:08:13.724 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:08:13.724 -07 000000579 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:08:13.724 -07 000000487 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:08:13.724 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:08:13.724 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:08:13.734 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 04:08:13.734 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:08:13.734 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 04:08:13.734 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:08:13.734 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 04:08:13.734 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 13 ms.
17-03-18 04:08:13.744 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:08:13.784 -07 000000590 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:08:14.084 -07 000000618 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:08:14.084 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:08:14.084 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:08:14.084 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1512312592, 0x0, 559484976) start.
17-03-18 04:08:14.124 -07 000000447 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:08:14.124 -07 000000480 INF: FPGA: Recv CAMSNAP
17-03-18 04:08:14.124 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 384 ms overall
17-03-18 04:08:14.204 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1512312592, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 04:08:14.204 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:08:14.204 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 04:08:14.204 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 04:08:14.224 -07 000000487 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:08:14.224 -07 000000618 INF: Autofocus start
17-03-18 04:08:14.224 -07 000000618 INF: MeasureProfile start
17-03-18 04:08:14.234 -07 000000611 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:08:14.234 -07 000000487 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 6 ms overall
17-03-18 04:08:14.234 -07 000000487 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:08:14.234 -07 000000618 INF: MeasureProfile done
17-03-18 04:08:14.234 -07 000000618 INF: X=32  Z correction [um]=0.09220707
17-03-18 04:08:14.234 -07 000000618 INF: Autofocus finished
17-03-18 04:08:14.434 -07 000000608 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:08:14.434 -07 000000487 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 195 ms to get response, and 202 ms overall
17-03-18 04:08:14.444 -07 000000610 INF: ------------ Scan Snapping tile 9 at Y-position 66.5380859375, Z-position -0.175327456368892. ----------
17-03-18 04:08:14.444 -07 000000610 INF: Cycle	121	Tile	9	Exposure Settings		A	415	G	200	T	200	C	415
17-03-18 04:08:14.444 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36831, sync = True, waitForSettling = True)
17-03-18 04:08:14.444 -07 000000610 INF: Z Motor: Moving to -0.168602 mm, started at -0.175327 mm, distance = 6.73 um
17-03-18 04:08:14.444 -07 000000610 INF: FPGA: Xmit ZDACW 36831\n [Z Motor]
17-03-18 04:08:14.444 -07 000000501 INF: FPGA: Recv ZDACW
17-03-18 04:08:14.454 -07 000000610 INF: FPGA: 'ZDACW 36831' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 04:08:14.454 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:08:14.454 -07 000000618 INF: FPGA: Recv ZDACR 36831
17-03-18 04:08:14.464 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:14.464 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:08:14.614 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:14.614 -07 000000012 INF: FPGA: Recv ZSGSRD 35539
17-03-18 04:08:14.624 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:08:14.624 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:14.624 -07 000000480 INF: FPGA: Recv ZSGSRD 35531
17-03-18 04:08:14.634 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:14.634 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:14.634 -07 000000501 INF: FPGA: Recv ZSGSRD 35531
17-03-18 04:08:14.644 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:14.644 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:14.644 -07 000000447 INF: FPGA: Recv ZSGSRD 35541
17-03-18 04:08:14.654 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:14.654 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:14.654 -07 000000437 INF: FPGA: Recv ZSGSRD 35537
17-03-18 04:08:14.664 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:14.664 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:14.664 -07 000000444 INF: FPGA: Recv ZSGSRD 35531
17-03-18 04:08:14.674 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:14.674 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:14.674 -07 000000608 INF: FPGA: Recv ZSGSRD 35535
17-03-18 04:08:14.684 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:14.684 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:14.684 -07 000000618 INF: FPGA: Recv ZSGSRD 35537
17-03-18 04:08:14.694 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:14.694 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:14.694 -07 000000012 INF: FPGA: Recv ZSGSRD 35535
17-03-18 04:08:14.704 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:14.704 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:14.704 -07 000000444 INF: FPGA: Recv ZSGSRD 35529
17-03-18 04:08:14.714 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:14.714 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:08:14.714 -07 000000501 INF: FPGA: Recv ZPIEZORD 31245
17-03-18 04:08:14.724 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:14.724 -07 000000610 INF: Z Motor: Piezo is near 46.7 V (nominally 0 to 100 V), expect near 56.2 V, since DAC is at 5.620 V. Piezo Error = -9.5 V.
17-03-18 04:08:14.724 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.6 um, Read 10 ADC samples: Avg = 35535 (-167.7 uncal um), Error = 0.9 uncal um, Median = 35535 (-167.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35529 (-167.7 uncal um), Max = 35541 (-167.8 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 04:08:14.724 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35535, posNoise = 6, negNoise = 6
17-03-18 04:08:14.724 -07 000000610 INF: Z Motor: After move to -0.168602, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:08:14.724 -07 000000610 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-18 04:08:14.724 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:08:14.724 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:08:14.724 -07 000000487 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:08:14.724 -07 000000444 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:08:14.724 -07 000000012 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:08:14.724 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:08:14.724 -07 000000437 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:08:14.724 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:08:14.724 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:08:14.724 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:08:14.734 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-18 04:08:14.734 -07 000000437 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:08:14.734 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 04:08:14.734 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:08:14.734 -07 000000437 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 04:08:14.734 -07 000000437 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:08:14.744 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 04:08:14.744 -07 000000012 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 04:08:14.744 -07 000000437 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 04:08:14.744 -07 000000437 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 04:08:14.744 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 415 415 200 200 37008 150\n [Camera]
17-03-18 04:08:14.944 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:08:15.354 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 607
17-03-18 04:08:15.354 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 607
17-03-18 04:08:15.364 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:08:15.364 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:08:15.364 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-18 04:08:15.364 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 607
17-03-18 04:08:15.364 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 607
17-03-18 04:08:15.364 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:08:15.364 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:08:15.364 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) start.
17-03-18 04:08:15.384 -07 000000447 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 121, FrontChillerTemperature: 3.989471,
17-03-18 04:08:15.554 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37008 800
17-03-18 04:08:15.704 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP turning grn on 950
17-03-18 04:08:15.754 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 393 ms.
17-03-18 04:08:15.754 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-18 04:08:15.754 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:08:15.754 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) end. Duration was 392 ms.
17-03-18 04:08:15.754 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-18 04:08:15.754 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:08:15.754 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:08:15.754 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 04:08:15.764 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:08:15.764 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-18 04:08:15.904 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1150
17-03-18 04:08:15.904 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1150
17-03-18 04:08:15.904 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:08:15.904 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:08:15.904 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-18 04:08:15.904 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1150
17-03-18 04:08:15.904 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1150
17-03-18 04:08:15.904 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:08:15.904 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:08:15.904 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) start.
17-03-18 04:08:16.094 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP 1343
17-03-18 04:08:16.094 -07 000000512 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:08:16.094 -07 000000610 INF: FPGA: 'CAMDBLSNAP 415 415 200 200 37008 150' command took 2 ms to send, 1344 ms to get response, and 1350 ms overall
17-03-18 04:08:16.094 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 04:08:16.094 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 10 at Y-position 66.5380859375, Z-Position -0.168607730468611. ------
17-03-18 04:08:16.094 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:08:16.094 -07 000000590 INF: Y Motor: MoveYZ optimized starting. Moving Y to 67.3826 mm, moving Z to -0.17546 mm
17-03-18 04:08:16.104 -07 000000590 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:08:16.104 -07 000000447 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:08:16.104 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 04:08:16.104 -07 000000501 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:08:16.104 -07 000000437 INF: Y Motor: Entering MoveAbsStepped (target = 107812 steps, sync = True, waitForSettling = True)
17-03-18 04:08:16.104 -07 000000579 INF: Z Motor: Entering MoveAbsStepped (DAC = 38330, sync = True, waitForSettling = False)
17-03-18 04:08:16.104 -07 000000437 INF: Y Motor: Moving to 67.3826 mm, started at 66.5381 mm, delta = 0.8445 mm
17-03-18 04:08:16.104 -07 000000579 INF: Z Motor: Moving to -0.175463 mm, started at -0.168608 mm, distance = -6.86 um
17-03-18 04:08:16.114 -07 000000437 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:08:16.114 -07 000000512 INF: FPGA: Recv YRDPOS 136271
17-03-18 04:08:16.124 -07 000000437 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-18 04:08:16.124 -07 000000437 INF: Y Motor: Encoder = 136271 = motor step 106461.7 = 66.5386 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:08:16.124 -07 000000579 INF: FPGA: Xmit ZDACW 38330\n [Z Motor]
17-03-18 04:08:16.124 -07 000000611 INF: FPGA: Recv ZDACW
17-03-18 04:08:16.124 -07 000000437 INF: Y Motor: Last commanded position = 66.5526 mm (106484.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:08:16.124 -07 000000437 INF: Y Motor: Moving 1350 steps-30
17-03-18 04:08:16.134 -07 000000579 INF: FPGA: 'ZDACW 38330' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-18 04:08:16.134 -07 000000437 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:08:16.144 -07 000000579 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:08:16.144 -07 000000512 INF: FPGA: Recv ZDACR 38330
17-03-18 04:08:16.154 -07 000000579 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 04:08:16.154 -07 000000579 INF: Z Motor: MoveAbsStepped took 43 ms (did NOT wait for settling yet))
17-03-18 04:08:16.304 -07 000000611 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:08:16.304 -07 000000501 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 197 ms to get response, and 202 ms overall
17-03-18 04:08:16.304 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 404 ms.
17-03-18 04:08:16.304 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 04:08:16.304 -07 000000444 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:08:16.304 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) end. Duration was 403 ms.
17-03-18 04:08:16.314 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-18 04:08:16.314 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:08:16.314 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:08:16.314 -07 000000444 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 04:08:16.314 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 412 ms.
17-03-18 04:08:16.324 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-18 04:08:16.504 -07 000000618 INF: FPGA: Recv YMVTILE
17-03-18 04:08:16.504 -07 000000437 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 383 ms overall
17-03-18 04:08:16.554 -07 000000437 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:08:16.554 -07 000000618 INF: FPGA: Recv YRDPOS 137976
17-03-18 04:08:16.564 -07 000000437 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 04:08:16.564 -07 000000437 INF: Y Motor: Encoder = 137976 = motor step 107793.8 = 67.3711 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:08:16.564 -07 000000437 INF: Y Motor: Position error before settling (table move) = -24 encoder counts (-0.012 mm)
17-03-18 04:08:16.564 -07 000000437 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 384 ms, distance = 0.845 mm, average velocity = 2.199 mm/sec
17-03-18 04:08:16.644 -07 000000455 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:08:16.644 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 120. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1718, R2=1787, Total=3505. Warn if over 250 bubbles per interval.
17-03-18 04:08:17.514 -07 000000437 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:08:17.514 -07 000000501 INF: FPGA: Recv YRDPOS 137976
17-03-18 04:08:17.524 -07 000000437 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:08:17.524 -07 000000437 INF: Y Motor: Encoder = 137976 = motor step 107793.8 = 67.3711 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:08:17.554 -07 000000437 INF: Y Motor: After move to 67.382607, error = -0.011513, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:08:17.554 -07 000000437 INF: Y Motor: Position error after settling (table move) = -24 encoder counts (-0.012 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:08:17.554 -07 000000437 INF: Y Motor: Moved to 67.3711 after 1444 ms (table move)
17-03-18 04:08:17.554 -07 000000590 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175463 mm (DAC = 38330)
17-03-18 04:08:17.554 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:17.554 -07 000000561 INF: FPGA: Recv ZSGSRD 36613
17-03-18 04:08:17.564 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 04:08:17.564 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:17.564 -07 000000447 INF: FPGA: Recv ZSGSRD 36606
17-03-18 04:08:17.574 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:17.574 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:17.574 -07 000000487 INF: FPGA: Recv ZSGSRD 36606
17-03-18 04:08:17.584 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:17.584 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:17.584 -07 000000480 INF: FPGA: Recv ZSGSRD 36606
17-03-18 04:08:17.594 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:17.594 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:17.594 -07 000000444 INF: FPGA: Recv ZSGSRD 36611
17-03-18 04:08:17.604 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:17.604 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:17.604 -07 000000012 INF: FPGA: Recv ZSGSRD 36607
17-03-18 04:08:17.614 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 04:08:17.614 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:17.614 -07 000000618 INF: FPGA: Recv ZSGSRD 36598
17-03-18 04:08:17.624 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:17.624 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:17.624 -07 000000444 INF: FPGA: Recv ZSGSRD 36598
17-03-18 04:08:17.634 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:17.634 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:17.634 -07 000000611 INF: FPGA: Recv ZSGSRD 36609
17-03-18 04:08:17.644 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:17.644 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:17.644 -07 000000501 INF: FPGA: Recv ZSGSRD 36606
17-03-18 04:08:17.654 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:17.654 -07 000000590 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:08:17.654 -07 000000437 INF: FPGA: Recv ZPIEZORD 32680
17-03-18 04:08:17.664 -07 000000590 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:17.664 -07 000000590 INF: Z Motor: Piezo is near 49.8 V (nominally 0 to 100 V), expect near 58.5 V, since DAC is at 5.849 V. Piezo Error = -8.7 V.
17-03-18 04:08:17.664 -07 000000590 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.5 um, Read 10 ADC samples: Avg = 36606 (-174.6 uncal um), Error = 0.9 uncal um, Median = 36606 (-174.6 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 36598 (-174.5 uncal um), Max = 36613 (-174.6 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 04:08:17.664 -07 000000590 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36606, posNoise = 7, negNoise = 8
17-03-18 04:08:17.664 -07 000000590 INF: Z Motor: After move to -0.175463, error = -0.000025, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:08:17.664 -07 000000590 INF: Z Motor: Settle wait time = 1449 ms, measure time = 105 ms (allowed 150 ms), total time = 1554 ms
17-03-18 04:08:17.664 -07 000000590 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 04:08:17.714 -07 000000590 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1610 ms
17-03-18 04:08:17.714 -07 000000590 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:08:17.714 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:08:17.714 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:08:17.714 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:08:17.714 -07 000000579 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:08:17.714 -07 000000012 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:08:17.714 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:08:17.714 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 04:08:17.714 -07 000000012 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:08:17.724 -07 000000012 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 04:08:17.724 -07 000000012 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:08:17.724 -07 000000012 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 04:08:17.724 -07 000000012 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 04:08:17.734 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:08:17.774 -07 000000590 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:08:18.074 -07 000000012 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:08:18.074 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:08:18.074 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:08:18.074 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2253754584, 0x0, 559484976) start.
17-03-18 04:08:18.114 -07 000000611 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:08:18.114 -07 000000444 INF: FPGA: Recv CAMSNAP
17-03-18 04:08:18.114 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 04:08:18.194 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2253754584, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 04:08:18.194 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:08:18.194 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 04:08:18.194 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 04:08:18.214 -07 000000437 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:08:18.214 -07 000000561 INF: Autofocus start
17-03-18 04:08:18.214 -07 000000561 INF: MeasureProfile start
17-03-18 04:08:18.214 -07 000000012 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:08:18.224 -07 000000437 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 04:08:18.224 -07 000000437 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:08:18.224 -07 000000561 INF: MeasureProfile done
17-03-18 04:08:18.224 -07 000000561 INF: X=16  Z correction [um]=0.01042744
17-03-18 04:08:18.224 -07 000000561 INF: Autofocus finished
17-03-18 04:08:18.424 -07 000000447 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:08:18.424 -07 000000437 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 203 ms overall
17-03-18 04:08:18.434 -07 000000610 INF: ------------ Scan Snapping tile 10 at Y-position 67.37109375, Z-position -0.175488061672437. ----------
17-03-18 04:08:18.434 -07 000000610 INF: Cycle	121	Tile	10	Exposure Settings		A	415	G	200	T	200	C	415
17-03-18 04:08:18.434 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36845, sync = True, waitForSettling = True)
17-03-18 04:08:18.434 -07 000000610 INF: Z Motor: Moving to -0.168666 mm, started at -0.175488 mm, distance = 6.82 um
17-03-18 04:08:18.434 -07 000000610 INF: FPGA: Xmit ZDACW 36845\n [Z Motor]
17-03-18 04:08:18.434 -07 000000590 INF: FPGA: Recv ZDACW
17-03-18 04:08:18.444 -07 000000610 INF: FPGA: 'ZDACW 36845' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 04:08:18.444 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:08:18.444 -07 000000611 INF: FPGA: Recv ZDACR 36845
17-03-18 04:08:18.454 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:18.454 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:08:18.604 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:18.604 -07 000000608 INF: FPGA: Recv ZSGSRD 35545
17-03-18 04:08:18.614 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:08:18.614 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:18.614 -07 000000455 INF: FPGA: Recv ZSGSRD 35546
17-03-18 04:08:18.624 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:18.624 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:18.624 -07 000000444 INF: FPGA: Recv ZSGSRD 35542
17-03-18 04:08:18.634 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:18.634 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:18.634 -07 000000625 INF: FPGA: Recv ZSGSRD 35545
17-03-18 04:08:18.644 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:18.644 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:18.644 -07 000000501 INF: FPGA: Recv ZSGSRD 35546
17-03-18 04:08:18.654 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:18.654 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:18.654 -07 000000561 INF: FPGA: Recv ZSGSRD 35544
17-03-18 04:08:18.664 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:18.664 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:18.664 -07 000000590 INF: FPGA: Recv ZSGSRD 35546
17-03-18 04:08:18.674 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:18.674 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:18.674 -07 000000611 INF: FPGA: Recv ZSGSRD 35542
17-03-18 04:08:18.684 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:18.684 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:18.684 -07 000000608 INF: FPGA: Recv ZSGSRD 35545
17-03-18 04:08:18.694 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:18.694 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:18.694 -07 000000455 INF: FPGA: Recv ZSGSRD 35549
17-03-18 04:08:18.704 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:18.704 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:08:18.704 -07 000000444 INF: FPGA: Recv ZPIEZORD 31263
17-03-18 04:08:18.714 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:18.714 -07 000000610 INF: Z Motor: Piezo is near 46.8 V (nominally 0 to 100 V), expect near 56.2 V, since DAC is at 5.622 V. Piezo Error = -9.4 V.
17-03-18 04:08:18.714 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.7 um, Read 10 ADC samples: Avg = 35545 (-167.8 uncal um), Error = 0.9 uncal um, Median = 35545 (-167.8 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 35542 (-167.8 uncal um), Max = 35549 (-167.8 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 04:08:18.714 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35545, posNoise = 4, negNoise = 3
17-03-18 04:08:18.714 -07 000000610 INF: Z Motor: After move to -0.168666, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:08:18.714 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-18 04:08:18.714 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:08:18.714 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:08:18.714 -07 000000480 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:08:18.714 -07 000000590 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:08:18.714 -07 000000447 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:08:18.714 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:08:18.714 -07 000000487 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:08:18.714 -07 000000487 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:08:18.714 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 04:08:18.714 -07 000000447 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:08:18.714 -07 000000487 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:08:18.714 -07 000000487 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:08:18.714 -07 000000447 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 04:08:18.724 -07 000000447 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:08:18.724 -07 000000487 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 04:08:18.724 -07 000000487 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:08:18.734 -07 000000447 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 04:08:18.734 -07 000000447 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 19 ms.
17-03-18 04:08:18.734 -07 000000487 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 04:08:18.734 -07 000000487 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 04:08:18.734 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 415 415 200 200 37022 150\n [Camera]
17-03-18 04:08:18.934 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:08:19.354 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 607
17-03-18 04:08:19.354 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 607
17-03-18 04:08:19.354 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:08:19.354 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:08:19.354 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) start.
17-03-18 04:08:19.354 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 607
17-03-18 04:08:19.354 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 607
17-03-18 04:08:19.354 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:08:19.354 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:08:19.354 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-18 04:08:19.544 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37022 800
17-03-18 04:08:19.694 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning grn on 950
17-03-18 04:08:19.744 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) end. Duration was 388 ms.
17-03-18 04:08:19.744 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-18 04:08:19.744 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:08:19.744 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 386 ms.
17-03-18 04:08:19.744 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-18 04:08:19.744 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:08:19.754 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:08:19.754 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-18 04:08:19.754 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:08:19.754 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 04:08:19.894 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1150
17-03-18 04:08:19.894 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1150
17-03-18 04:08:19.894 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:08:19.894 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:08:19.894 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 2585563240, 0x0, 391868352) start.
17-03-18 04:08:19.894 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1150
17-03-18 04:08:19.894 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1150
17-03-18 04:08:19.894 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:08:19.894 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:08:19.894 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2620985504, 0x0, 418435064) start.
17-03-18 04:08:20.084 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP 1342
17-03-18 04:08:20.084 -07 000000437 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:08:20.084 -07 000000610 INF: FPGA: 'CAMDBLSNAP 415 415 200 200 37022 150' command took 2 ms to send, 1337 ms to get response, and 1349 ms overall
17-03-18 04:08:20.084 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 04:08:20.094 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 11 at Y-position 67.37109375, Z-Position -0.168671972590028. ------
17-03-18 04:08:20.094 -07 000000455 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:08:20.094 -07 000000561 INF: Y Motor: MoveYZ optimized starting. Moving Y to 68.2126 mm, moving Z to -0.17492 mm
17-03-18 04:08:20.094 -07 000000561 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:08:20.094 -07 000000012 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:08:20.094 -07 000000480 INF: Y Motor: Entering MoveAbsStepped (target = 109140 steps, sync = True, waitForSettling = True)
17-03-18 04:08:20.094 -07 000000480 INF: Y Motor: Moving to 68.2126 mm, started at 67.3711 mm, delta = 0.8415 mm
17-03-18 04:08:20.094 -07 000000444 INF: Z Motor: Entering MoveAbsStepped (DAC = 38211, sync = True, waitForSettling = False)
17-03-18 04:08:20.094 -07 000000444 INF: Z Motor: Moving to -0.174919 mm, started at -0.168672 mm, distance = -6.25 um
17-03-18 04:08:20.104 -07 000000455 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:08:20.104 -07 000000444 INF: FPGA: Xmit ZDACW 38211\n [Z Motor]
17-03-18 04:08:20.104 -07 000000501 INF: FPGA: Recv ZDACW
17-03-18 04:08:20.114 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:08:20.114 -07 000000444 INF: FPGA: 'ZDACW 38211' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-18 04:08:20.114 -07 000000501 INF: FPGA: Recv YRDPOS 137976
17-03-18 04:08:20.124 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 21 ms overall
17-03-18 04:08:20.124 -07 000000480 INF: Y Motor: Encoder = 137976 = motor step 107793.8 = 67.3711 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:08:20.124 -07 000000480 INF: Y Motor: Last commanded position = 67.3826 mm (107812.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:08:20.124 -07 000000480 INF: Y Motor: Moving 1346 steps-24
17-03-18 04:08:20.124 -07 000000455 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:08:20.134 -07 000000444 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:08:20.134 -07 000000487 INF: FPGA: Recv ZDACR 38211
17-03-18 04:08:20.144 -07 000000444 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 04:08:20.144 -07 000000444 INF: Z Motor: MoveAbsStepped took 41 ms (did NOT wait for settling yet))
17-03-18 04:08:20.144 -07 000000480 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:08:20.294 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2620985504, 0x0, 418435064) end. Duration was 392 ms.
17-03-18 04:08:20.294 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-18 04:08:20.294 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:08:20.294 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 2585563240, 0x0, 391868352) end. Duration was 398 ms.
17-03-18 04:08:20.294 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 04:08:20.294 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:08:20.294 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:08:20.304 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 04:08:20.304 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-18 04:08:20.304 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-18 04:08:20.324 -07 000000437 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:08:20.324 -07 000000455 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 193 ms to get response, and 223 ms overall
17-03-18 04:08:20.514 -07 000000012 INF: FPGA: Recv YMVTILE
17-03-18 04:08:20.514 -07 000000480 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 398 ms overall
17-03-18 04:08:20.564 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:08:20.574 -07 000000447 INF: FPGA: Recv YRDPOS 139683
17-03-18 04:08:20.574 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 04:08:20.574 -07 000000480 INF: Y Motor: Encoder = 139683 = motor step 109127.3 = 68.2046 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:08:20.574 -07 000000480 INF: Y Motor: Position error before settling (table move) = -16 encoder counts (-0.008 mm)
17-03-18 04:08:20.574 -07 000000480 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.842 mm, average velocity = 2.114 mm/sec
17-03-18 04:08:20.744 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 121, FrontChillerTemperature: 4.015368,
17-03-18 04:08:21.524 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:08:21.524 -07 000000437 INF: FPGA: Recv YRDPOS 139683
17-03-18 04:08:21.534 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:21.534 -07 000000480 INF: Y Motor: Encoder = 139683 = motor step 109127.3 = 68.2046 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:08:21.564 -07 000000480 INF: Y Motor: After move to 68.212608, error = -0.008018, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:08:21.564 -07 000000480 INF: Y Motor: Position error after settling (table move) = -16 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:08:21.564 -07 000000480 INF: Y Motor: Moved to 68.2046 after 1462 ms (table move)
17-03-18 04:08:21.564 -07 000000561 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174919 mm (DAC = 38211)
17-03-18 04:08:21.564 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:21.564 -07 000000437 INF: FPGA: Recv ZSGSRD 36522
17-03-18 04:08:21.574 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 04:08:21.574 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:21.574 -07 000000455 INF: FPGA: Recv ZSGSRD 36514
17-03-18 04:08:21.584 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:21.584 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:21.584 -07 000000012 INF: FPGA: Recv ZSGSRD 36513
17-03-18 04:08:21.594 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:21.594 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:21.594 -07 000000487 INF: FPGA: Recv ZSGSRD 36521
17-03-18 04:08:21.604 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:21.604 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:21.604 -07 000000437 INF: FPGA: Recv ZSGSRD 36513
17-03-18 04:08:21.614 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:21.614 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:21.614 -07 000000512 INF: FPGA: Recv ZSGSRD 36519
17-03-18 04:08:21.624 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:21.624 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:21.624 -07 000000618 INF: FPGA: Recv ZSGSRD 36516
17-03-18 04:08:21.634 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:21.634 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:21.634 -07 000000444 INF: FPGA: Recv ZSGSRD 36514
17-03-18 04:08:21.644 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:21.644 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:21.644 -07 000000487 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:08:21.644 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 120. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1718, R2=1787, Total=3505. Warn if over 250 bubbles per interval.
17-03-18 04:08:21.644 -07 000000437 INF: FPGA: Recv ZSGSRD 36523
17-03-18 04:08:21.654 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:21.654 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:21.654 -07 000000512 INF: FPGA: Recv ZSGSRD 36508
17-03-18 04:08:21.664 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:21.664 -07 000000561 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:08:21.664 -07 000000480 INF: FPGA: Recv ZPIEZORD 32563
17-03-18 04:08:21.674 -07 000000561 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:21.674 -07 000000561 INF: Z Motor: Piezo is near 49.6 V (nominally 0 to 100 V), expect near 58.3 V, since DAC is at 5.831 V. Piezo Error = -8.7 V.
17-03-18 04:08:21.674 -07 000000561 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.9 um, Read 10 ADC samples: Avg = 36516 (-174.0 uncal um), Error = 0.9 uncal um, Median = 36515 (-174.0 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 36508 (-174.0 uncal um), Max = 36523 (-174.1 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 04:08:21.674 -07 000000561 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36516, posNoise = 7, negNoise = 8
17-03-18 04:08:21.674 -07 000000561 INF: Z Motor: After move to -0.174919, error = 0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:08:21.674 -07 000000561 INF: Z Motor: Settle wait time = 1466 ms, measure time = 105 ms (allowed 150 ms), total time = 1571 ms
17-03-18 04:08:21.674 -07 000000561 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 04:08:21.724 -07 000000561 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1626 ms
17-03-18 04:08:21.724 -07 000000561 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:08:21.724 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:08:21.724 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:08:21.724 -07 000000447 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:08:21.724 -07 000000590 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:08:21.724 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:08:21.724 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:08:21.724 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:08:21.724 -07 000000590 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:08:21.734 -07 000000590 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 04:08:21.734 -07 000000590 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:08:21.734 -07 000000590 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 04:08:21.734 -07 000000590 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 04:08:21.744 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:08:21.784 -07 000000561 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:08:22.084 -07 000000474 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:08:22.084 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:08:22.084 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:08:22.084 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2268430664, 0x0, 559484976) start.
17-03-18 04:08:22.124 -07 000000625 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:08:22.124 -07 000000618 INF: FPGA: Recv CAMSNAP
17-03-18 04:08:22.124 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 04:08:22.204 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2268430664, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 04:08:22.204 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:08:22.204 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:08:22.204 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 120 ms.
17-03-18 04:08:22.224 -07 000000561 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:08:22.224 -07 000000012 INF: Autofocus start
17-03-18 04:08:22.224 -07 000000012 INF: MeasureProfile start
17-03-18 04:08:22.224 -07 000000437 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:08:22.234 -07 000000561 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:08:22.234 -07 000000561 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:08:22.244 -07 000000012 INF: MeasureProfile done
17-03-18 04:08:22.244 -07 000000012 INF: X=16  Z correction [um]=0.01042744
17-03-18 04:08:22.244 -07 000000012 INF: Autofocus finished
17-03-18 04:08:22.434 -07 000000487 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:08:22.434 -07 000000561 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 203 ms overall
17-03-18 04:08:22.444 -07 000000610 INF: ------------ Scan Snapping tile 11 at Y-position 68.20458984375, Z-position -0.174909882579678. ----------
17-03-18 04:08:22.444 -07 000000610 INF: Cycle	121	Tile	11	Exposure Settings		A	415	G	200	T	200	C	415
17-03-18 04:08:22.444 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36725, sync = True, waitForSettling = True)
17-03-18 04:08:22.444 -07 000000610 INF: Z Motor: Moving to -0.168116 mm, started at -0.174910 mm, distance = 6.79 um
17-03-18 04:08:22.444 -07 000000610 INF: FPGA: Xmit ZDACW 36725\n [Z Motor]
17-03-18 04:08:22.444 -07 000000579 INF: FPGA: Recv ZDACW
17-03-18 04:08:22.454 -07 000000610 INF: FPGA: 'ZDACW 36725' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:08:22.454 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:08:22.454 -07 000000447 INF: FPGA: Recv ZDACR 36725
17-03-18 04:08:22.464 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:22.464 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:08:22.614 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:22.614 -07 000000455 INF: FPGA: Recv ZSGSRD 35460
17-03-18 04:08:22.624 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:08:22.624 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:22.624 -07 000000487 INF: FPGA: Recv ZSGSRD 35455
17-03-18 04:08:22.634 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:22.634 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:22.634 -07 000000447 INF: FPGA: Recv ZSGSRD 35466
17-03-18 04:08:22.644 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:22.644 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:22.644 -07 000000437 INF: FPGA: Recv ZSGSRD 35457
17-03-18 04:08:22.654 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:22.654 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:22.654 -07 000000590 INF: FPGA: Recv ZSGSRD 35462
17-03-18 04:08:22.664 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:22.664 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:22.664 -07 000000579 INF: FPGA: Recv ZSGSRD 35464
17-03-18 04:08:22.674 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:22.674 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:22.674 -07 000000512 INF: FPGA: Recv ZSGSRD 35457
17-03-18 04:08:22.684 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:22.684 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:22.684 -07 000000455 INF: FPGA: Recv ZSGSRD 35461
17-03-18 04:08:22.694 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:22.694 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:22.694 -07 000000590 INF: FPGA: Recv ZSGSRD 35466
17-03-18 04:08:22.704 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:22.704 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:22.704 -07 000000618 INF: FPGA: Recv ZSGSRD 35457
17-03-18 04:08:22.714 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:22.714 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:08:22.714 -07 000000512 INF: FPGA: Recv ZPIEZORD 31143
17-03-18 04:08:22.724 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:22.724 -07 000000610 INF: Z Motor: Piezo is near 46.5 V (nominally 0 to 100 V), expect near 56.0 V, since DAC is at 5.604 V. Piezo Error = -9.5 V.
17-03-18 04:08:22.724 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.1 um, Read 10 ADC samples: Avg = 35460 (-167.3 uncal um), Error = 0.9 uncal um, Median = 35460 (-167.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35455 (-167.2 uncal um), Max = 35466 (-167.3 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 04:08:22.724 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35460, posNoise = 6, negNoise = 5
17-03-18 04:08:22.724 -07 000000610 INF: Z Motor: After move to -0.168116, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:08:22.724 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 04:08:22.724 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:08:22.724 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:08:22.724 -07 000000590 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:08:22.724 -07 000000625 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:08:22.724 -07 000000455 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:08:22.724 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:08:22.724 -07 000000444 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:08:22.724 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:08:22.724 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:08:22.724 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:08:22.724 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:08:22.724 -07 000000444 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:08:22.734 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 04:08:22.734 -07 000000444 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 04:08:22.734 -07 000000444 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:08:22.734 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:08:22.744 -07 000000444 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 04:08:22.744 -07 000000444 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 04:08:22.744 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-18 04:08:22.744 -07 000000455 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 04:08:22.744 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 415 415 200 200 36902 150\n [Camera]
17-03-18 04:08:22.944 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:08:23.354 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 607
17-03-18 04:08:23.364 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 607
17-03-18 04:08:23.364 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:08:23.364 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:08:23.364 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 2684358704, 0x0, 391868352) start.
17-03-18 04:08:23.364 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 607
17-03-18 04:08:23.364 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 607
17-03-18 04:08:23.364 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:08:23.364 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:08:23.364 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 2719780968, 0x0, 418435064) start.
17-03-18 04:08:23.554 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36902 800
17-03-18 04:08:23.704 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP turning grn on 950
17-03-18 04:08:23.744 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 2719780968, 0x0, 418435064) end. Duration was 377 ms.
17-03-18 04:08:23.744 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-18 04:08:23.744 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:08:23.744 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:08:23.744 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 2684358704, 0x0, 391868352) end. Duration was 387 ms.
17-03-18 04:08:23.744 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-18 04:08:23.744 -07 000000444 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:08:23.754 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-18 04:08:23.754 -07 000000444 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:08:23.754 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-18 04:08:23.904 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1150
17-03-18 04:08:23.904 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1150
17-03-18 04:08:23.904 -07 000000487 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:08:24.054 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1150
17-03-18 04:08:24.054 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1150
17-03-18 04:08:24.054 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:08:24.054 -07 000000487 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:08:24.054 -07 000000487 INF: Camera: sBCa_ReadImage(785074288, 2755203232, 0x0, 391868352) start.
17-03-18 04:08:24.054 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:08:24.054 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-18 04:08:24.094 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP 1343
17-03-18 04:08:24.094 -07 000000579 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:08:24.094 -07 000000610 INF: FPGA: 'CAMDBLSNAP 415 415 200 200 36902 150' command took 2 ms to send, 1344 ms to get response, and 1350 ms overall
17-03-18 04:08:24.094 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 04:08:24.094 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 12 at Y-position 68.20458984375, Z-Position -0.168125914557978. ------
17-03-18 04:08:24.094 -07 000000474 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:08:24.094 -07 000000618 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.0426 mm, moving Z to -0.17471 mm
17-03-18 04:08:24.094 -07 000000618 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:08:24.104 -07 000000012 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:08:24.104 -07 000000474 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 04:08:24.104 -07 000000590 INF: Y Motor: Entering MoveAbsStepped (target = 110468 steps, sync = True, waitForSettling = True)
17-03-18 04:08:24.104 -07 000000474 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:08:24.104 -07 000000590 INF: Y Motor: Moving to 69.0426 mm, started at 68.2046 mm, delta = 0.8380 mm
17-03-18 04:08:24.104 -07 000000579 INF: Z Motor: Entering MoveAbsStepped (DAC = 38166, sync = True, waitForSettling = False)
17-03-18 04:08:24.104 -07 000000579 INF: Z Motor: Moving to -0.174713 mm, started at -0.168126 mm, distance = -6.59 um
17-03-18 04:08:24.114 -07 000000590 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:08:24.114 -07 000000447 INF: FPGA: Recv YRDPOS 139684
17-03-18 04:08:24.124 -07 000000579 INF: FPGA: Xmit ZDACW 38166\n [Z Motor]
17-03-18 04:08:24.124 -07 000000590 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-18 04:08:24.124 -07 000000590 INF: Y Motor: Encoder = 139684 = motor step 109128.1 = 68.2051 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:08:24.124 -07 000000012 INF: FPGA: Recv ZDACW
17-03-18 04:08:24.124 -07 000000590 INF: Y Motor: Last commanded position = 68.2126 mm (109140.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:08:24.124 -07 000000590 INF: Y Motor: Moving 1340 steps-16
17-03-18 04:08:24.134 -07 000000590 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:08:24.134 -07 000000579 INF: FPGA: 'ZDACW 38166' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-18 04:08:24.144 -07 000000579 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:08:24.144 -07 000000437 INF: FPGA: Recv ZDACR 38166
17-03-18 04:08:24.154 -07 000000579 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 04:08:24.154 -07 000000579 INF: Z Motor: MoveAbsStepped took 46 ms (did NOT wait for settling yet))
17-03-18 04:08:24.304 -07 000000480 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:08:24.304 -07 000000474 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 196 ms to get response, and 202 ms overall
17-03-18 04:08:24.454 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 393 ms.
17-03-18 04:08:24.454 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-18 04:08:24.454 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:08:24.454 -07 000000487 INF: Camera: sBCa_ReadImage(785074288, 2755203232, 0x0, 391868352) end. Duration was 401 ms.
17-03-18 04:08:24.454 -07 000000487 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 04:08:24.454 -07 000000487 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:08:24.454 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:08:24.454 -07 000000487 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:08:24.454 -07 000000487 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 554 ms.
17-03-18 04:08:24.464 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-18 04:08:24.504 -07 000000444 INF: FPGA: Recv YMVTILE
17-03-18 04:08:24.504 -07 000000590 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 369 ms to get response, and 381 ms overall
17-03-18 04:08:24.554 -07 000000590 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:08:24.564 -07 000000447 INF: FPGA: Recv YRDPOS 141366
17-03-18 04:08:24.564 -07 000000590 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 04:08:24.564 -07 000000590 INF: Y Motor: Encoder = 141366 = motor step 110442.2 = 69.0264 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:08:24.564 -07 000000590 INF: Y Motor: Position error before settling (table move) = -33 encoder counts (-0.016 mm)
17-03-18 04:08:24.564 -07 000000590 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 381 ms, distance = 0.838 mm, average velocity = 2.200 mm/sec
17-03-18 04:08:25.514 -07 000000590 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:08:25.514 -07 000000447 INF: FPGA: Recv YRDPOS 141366
17-03-18 04:08:25.524 -07 000000590 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:08:25.524 -07 000000590 INF: Y Motor: Encoder = 141366 = motor step 110442.2 = 69.0264 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:08:25.544 -07 000000590 INF: Y Motor: After move to 69.042610, error = -0.016243, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:08:25.554 -07 000000590 INF: Y Motor: Position error after settling (table move) = -33 encoder counts (-0.016 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:08:25.554 -07 000000590 INF: Y Motor: Moved to 69.0264 after 1446 ms (table move)
17-03-18 04:08:25.554 -07 000000618 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174713 mm (DAC = 38166)
17-03-18 04:08:25.554 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:25.554 -07 000000480 INF: FPGA: Recv ZSGSRD 36486
17-03-18 04:08:25.564 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:08:25.564 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:25.564 -07 000000444 INF: FPGA: Recv ZSGSRD 36492
17-03-18 04:08:25.574 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:25.574 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:25.574 -07 000000608 INF: FPGA: Recv ZSGSRD 36485
17-03-18 04:08:25.584 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:25.584 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:25.584 -07 000000590 INF: FPGA: Recv ZSGSRD 36478
17-03-18 04:08:25.594 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:25.594 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:25.594 -07 000000480 INF: FPGA: Recv ZSGSRD 36481
17-03-18 04:08:25.604 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:25.604 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:25.604 -07 000000480 INF: FPGA: Recv ZSGSRD 36484
17-03-18 04:08:25.614 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 04:08:25.614 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:25.614 -07 000000579 INF: FPGA: Recv ZSGSRD 36494
17-03-18 04:08:25.624 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:25.624 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:25.624 -07 000000012 INF: FPGA: Recv ZSGSRD 36488
17-03-18 04:08:25.634 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:25.634 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:25.634 -07 000000625 INF: FPGA: Recv ZSGSRD 36488
17-03-18 04:08:25.644 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:25.644 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:25.644 -07 000000512 INF: FPGA: Recv ZSGSRD 36492
17-03-18 04:08:25.654 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:25.654 -07 000000618 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:08:25.654 -07 000000474 INF: FPGA: Recv ZPIEZORD 32502
17-03-18 04:08:25.664 -07 000000618 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:25.664 -07 000000618 INF: Z Motor: Piezo is near 49.4 V (nominally 0 to 100 V), expect near 58.2 V, since DAC is at 5.824 V. Piezo Error = -8.8 V.
17-03-18 04:08:25.664 -07 000000618 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.7 um, Read 10 ADC samples: Avg = 36487 (-173.8 uncal um), Error = 0.9 uncal um, Median = 36487 (-173.8 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 36478 (-173.8 uncal um), Max = 36494 (-173.9 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-18 04:08:25.664 -07 000000618 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36487, posNoise = 7, negNoise = 9
17-03-18 04:08:25.664 -07 000000618 INF: Z Motor: After move to -0.174713, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:08:25.664 -07 000000618 INF: Z Motor: Settle wait time = 1449 ms, measure time = 107 ms (allowed 150 ms), total time = 1556 ms
17-03-18 04:08:25.664 -07 000000618 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-18 04:08:25.714 -07 000000618 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1610 ms
17-03-18 04:08:25.714 -07 000000618 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:08:25.714 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:08:25.714 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:08:25.714 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:08:25.714 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:08:25.714 -07 000000561 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:08:25.714 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:08:25.714 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 3 ms.
17-03-18 04:08:25.714 -07 000000561 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:08:25.724 -07 000000561 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 04:08:25.724 -07 000000561 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:08:25.734 -07 000000561 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 9 ms.
17-03-18 04:08:25.734 -07 000000561 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-18 04:08:25.734 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:08:25.784 -07 000000618 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:08:26.074 -07 000000474 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:08:26.074 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:08:26.084 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:08:26.084 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2415923248, 0x0, 559484976) start.
17-03-18 04:08:26.104 -07 000000474 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 121, FrontChillerTemperature: 4.043918,
17-03-18 04:08:26.114 -07 000000501 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:08:26.114 -07 000000474 INF: FPGA: Recv CAMSNAP
17-03-18 04:08:26.114 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 379 ms to get response, and 384 ms overall
17-03-18 04:08:26.204 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2415923248, 0x0, 559484976) end. Duration was 118 ms.
17-03-18 04:08:26.204 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:08:26.204 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 04:08:26.204 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 122 ms.
17-03-18 04:08:26.214 -07 000000487 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:08:26.214 -07 000000455 INF: Autofocus start
17-03-18 04:08:26.214 -07 000000455 INF: MeasureProfile start
17-03-18 04:08:26.214 -07 000000625 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:08:26.224 -07 000000487 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 04:08:26.224 -07 000000455 INF: MeasureProfile done
17-03-18 04:08:26.224 -07 000000455 INF: X=32  Z correction [um]=0.09220707
17-03-18 04:08:26.224 -07 000000455 INF: Autofocus finished
17-03-18 04:08:26.234 -07 000000487 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:08:26.434 -07 000000512 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:08:26.434 -07 000000487 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 214 ms overall
17-03-18 04:08:26.434 -07 000000610 INF: ------------ Scan Snapping tile 12 at Y-position 69.0263671875, Z-position -0.174723580427567. ----------
17-03-18 04:08:26.444 -07 000000610 INF: Cycle	121	Tile	12	Exposure Settings		A	415	G	200	T	200	C	415
17-03-18 04:08:26.444 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36699, sync = True, waitForSettling = True)
17-03-18 04:08:26.444 -07 000000610 INF: Z Motor: Moving to -0.167997 mm, started at -0.174724 mm, distance = 6.73 um
17-03-18 04:08:26.444 -07 000000610 INF: FPGA: Xmit ZDACW 36699\n [Z Motor]
17-03-18 04:08:26.444 -07 000000474 INF: FPGA: Recv ZDACW
17-03-18 04:08:26.454 -07 000000610 INF: FPGA: 'ZDACW 36699' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:08:26.454 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:08:26.454 -07 000000590 INF: FPGA: Recv ZDACR 36699
17-03-18 04:08:26.464 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:26.464 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:08:26.614 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:26.614 -07 000000455 INF: FPGA: Recv ZSGSRD 35439
17-03-18 04:08:26.624 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:08:26.624 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:26.624 -07 000000474 INF: FPGA: Recv ZSGSRD 35444
17-03-18 04:08:26.634 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:26.634 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:26.634 -07 000000608 INF: FPGA: Recv ZSGSRD 35440
17-03-18 04:08:26.644 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:26.644 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:26.644 -07 000000480 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:08:26.644 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 120. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1718, R2=1787, Total=3505. Warn if over 250 bubbles per interval.
17-03-18 04:08:26.644 -07 000000447 INF: FPGA: Recv ZSGSRD 35443
17-03-18 04:08:26.654 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:26.654 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:26.654 -07 000000625 INF: FPGA: Recv ZSGSRD 35444
17-03-18 04:08:26.664 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:26.664 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:26.664 -07 000000444 INF: FPGA: Recv ZSGSRD 35440
17-03-18 04:08:26.674 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:26.674 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:26.674 -07 000000618 INF: FPGA: Recv ZSGSRD 35444
17-03-18 04:08:26.684 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:26.684 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:26.684 -07 000000474 INF: FPGA: Recv ZSGSRD 35448
17-03-18 04:08:26.694 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:26.694 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:26.694 -07 000000590 INF: FPGA: Recv ZSGSRD 35440
17-03-18 04:08:26.704 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:26.704 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:26.704 -07 000000512 INF: FPGA: Recv ZSGSRD 35434
17-03-18 04:08:26.714 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:26.714 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:08:26.714 -07 000000012 INF: FPGA: Recv ZPIEZORD 31106
17-03-18 04:08:26.724 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:26.724 -07 000000610 INF: Z Motor: Piezo is near 46.5 V (nominally 0 to 100 V), expect near 56.0 V, since DAC is at 5.600 V. Piezo Error = -9.5 V.
17-03-18 04:08:26.724 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.0 um, Read 10 ADC samples: Avg = 35442 (-167.1 uncal um), Error = 0.9 uncal um, Median = 35442 (-167.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 35434 (-167.1 uncal um), Max = 35448 (-167.2 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 04:08:26.724 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35442, posNoise = 6, negNoise = 8
17-03-18 04:08:26.724 -07 000000610 INF: Z Motor: After move to -0.167997, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:08:26.724 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-18 04:08:26.724 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:08:26.724 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:08:26.724 -07 000000625 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:08:26.724 -07 000000611 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:08:26.724 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:08:26.724 -07 000000487 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:08:26.724 -07 000000487 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:08:26.724 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:08:26.724 -07 000000487 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:08:26.724 -07 000000487 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:08:26.724 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:08:26.724 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:08:26.734 -07 000000487 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 04:08:26.734 -07 000000487 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:08:26.734 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 04:08:26.734 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:08:26.744 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 04:08:26.744 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 04:08:26.744 -07 000000487 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 04:08:26.744 -07 000000487 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 04:08:26.744 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 415 415 200 200 36876 150\n [Camera]
17-03-18 04:08:26.944 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:08:27.354 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 609
17-03-18 04:08:27.354 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 609
17-03-18 04:08:27.364 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:08:27.364 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 609
17-03-18 04:08:27.364 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 609
17-03-18 04:08:27.364 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:08:27.374 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:08:27.374 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 2470426896, 0x0, 418435064) start.
17-03-18 04:08:27.374 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:08:27.374 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2435004632, 0x0, 391868352) start.
17-03-18 04:08:27.554 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36876 800
17-03-18 04:08:27.694 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP turning grn on 950
17-03-18 04:08:27.754 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 2470426896, 0x0, 418435064) end. Duration was 378 ms.
17-03-18 04:08:27.754 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-18 04:08:27.754 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:08:27.754 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:08:27.754 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2435004632, 0x0, 391868352) end. Duration was 382 ms.
17-03-18 04:08:27.754 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-18 04:08:27.754 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:08:27.764 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:08:27.764 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 04:08:27.884 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 520 ms.
17-03-18 04:08:27.904 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1150
17-03-18 04:08:27.904 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1150
17-03-18 04:08:27.904 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:08:27.904 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1150
17-03-18 04:08:27.904 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1150
17-03-18 04:08:27.904 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:08:27.904 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:08:27.904 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 04:08:27.904 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:08:27.904 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-18 04:08:28.094 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP 1343
17-03-18 04:08:28.094 -07 000000447 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:08:28.094 -07 000000610 INF: FPGA: 'CAMDBLSNAP 415 415 200 200 36876 150' command took 2 ms to send, 1342 ms to get response, and 1349 ms overall
17-03-18 04:08:28.094 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 04:08:28.094 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 13 at Y-position 69.0263671875, Z-Position -0.168010278739427. ------
17-03-18 04:08:28.094 -07 000000012 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:08:28.094 -07 000000455 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.8726 mm, moving Z to -0.17443 mm
17-03-18 04:08:28.094 -07 000000455 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:08:28.104 -07 000000625 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:08:28.104 -07 000000618 INF: Y Motor: Entering MoveAbsStepped (target = 111796 steps, sync = True, waitForSettling = True)
17-03-18 04:08:28.104 -07 000000618 INF: Y Motor: Moving to 69.8726 mm, started at 69.0264 mm, delta = 0.8462 mm
17-03-18 04:08:28.104 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:08:28.104 -07 000000012 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 04:08:28.104 -07 000000512 INF: Z Motor: Entering MoveAbsStepped (DAC = 38104, sync = True, waitForSettling = False)
17-03-18 04:08:28.104 -07 000000512 INF: Z Motor: Moving to -0.174429 mm, started at -0.168010 mm, distance = -6.42 um
17-03-18 04:08:28.104 -07 000000561 INF: FPGA: Recv YRDPOS 141367
17-03-18 04:08:28.114 -07 000000618 INF: FPGA: 'YRDPOS' command took 2 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 04:08:28.114 -07 000000618 INF: Y Motor: Encoder = 141367 = motor step 110443.0 = 69.0269 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:08:28.114 -07 000000012 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:08:28.114 -07 000000618 INF: Y Motor: Last commanded position = 69.0426 mm (110468.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:08:28.114 -07 000000618 INF: Y Motor: Moving 1353 steps-33
17-03-18 04:08:28.124 -07 000000512 INF: FPGA: Xmit ZDACW 38104\n [Z Motor]
17-03-18 04:08:28.124 -07 000000437 INF: FPGA: Recv ZDACW
17-03-18 04:08:28.134 -07 000000512 INF: FPGA: 'ZDACW 38104' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-18 04:08:28.134 -07 000000618 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:08:28.144 -07 000000512 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:08:28.144 -07 000000625 INF: FPGA: Recv ZDACR 38104
17-03-18 04:08:28.154 -07 000000512 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 04:08:28.154 -07 000000512 INF: Z Motor: MoveAbsStepped took 45 ms (did NOT wait for settling yet))
17-03-18 04:08:28.304 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 397 ms.
17-03-18 04:08:28.304 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 04:08:28.304 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:08:28.304 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 402 ms.
17-03-18 04:08:28.304 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-18 04:08:28.304 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:08:28.304 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:08:28.304 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-18 04:08:28.314 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:08:28.314 -07 000000487 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:08:28.314 -07 000000012 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 208 ms overall
17-03-18 04:08:28.314 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-18 04:08:28.514 -07 000000512 INF: FPGA: Recv YMVTILE
17-03-18 04:08:28.514 -07 000000618 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 370 ms to get response, and 396 ms overall
17-03-18 04:08:28.554 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:08:28.564 -07 000000012 INF: FPGA: Recv YRDPOS 143079
17-03-18 04:08:28.564 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 04:08:28.564 -07 000000618 INF: Y Motor: Encoder = 143079 = motor step 111780.5 = 69.8628 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:08:28.564 -07 000000618 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-18 04:08:28.564 -07 000000618 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 396 ms, distance = 0.846 mm, average velocity = 2.137 mm/sec
17-03-18 04:08:29.514 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:08:29.514 -07 000000608 INF: FPGA: Recv YRDPOS 143079
17-03-18 04:08:29.524 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:08:29.524 -07 000000618 INF: Y Motor: Encoder = 143079 = motor step 111780.5 = 69.8628 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:08:29.554 -07 000000618 INF: Y Motor: After move to 69.872612, error = -0.009819, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:08:29.554 -07 000000618 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:08:29.554 -07 000000618 INF: Y Motor: Moved to 69.8628 after 1449 ms (table move)
17-03-18 04:08:29.554 -07 000000455 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174429 mm (DAC = 38104)
17-03-18 04:08:29.554 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:29.554 -07 000000474 INF: FPGA: Recv ZSGSRD 36449
17-03-18 04:08:29.564 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 04:08:29.564 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:29.564 -07 000000561 INF: FPGA: Recv ZSGSRD 36447
17-03-18 04:08:29.574 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:29.574 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:29.574 -07 000000012 INF: FPGA: Recv ZSGSRD 36436
17-03-18 04:08:29.584 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:29.584 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:29.584 -07 000000608 INF: FPGA: Recv ZSGSRD 36440
17-03-18 04:08:29.594 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:29.594 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:29.594 -07 000000625 INF: FPGA: Recv ZSGSRD 36439
17-03-18 04:08:29.604 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:29.604 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:29.604 -07 000000474 INF: FPGA: Recv ZSGSRD 36445
17-03-18 04:08:29.614 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:29.614 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:29.614 -07 000000437 INF: FPGA: Recv ZSGSRD 36443
17-03-18 04:08:29.624 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:29.624 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:29.624 -07 000000608 INF: FPGA: Recv ZSGSRD 36439
17-03-18 04:08:29.634 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:29.634 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:29.634 -07 000000512 INF: FPGA: Recv ZSGSRD 36441
17-03-18 04:08:29.644 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:29.644 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:29.644 -07 000000561 INF: FPGA: Recv ZSGSRD 36443
17-03-18 04:08:29.654 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:29.654 -07 000000455 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:08:29.654 -07 000000437 INF: FPGA: Recv ZPIEZORD 32482
17-03-18 04:08:29.664 -07 000000455 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:29.664 -07 000000455 INF: Z Motor: Piezo is near 49.4 V (nominally 0 to 100 V), expect near 58.1 V, since DAC is at 5.814 V. Piezo Error = -8.8 V.
17-03-18 04:08:29.664 -07 000000455 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.4 um, Read 10 ADC samples: Avg = 36442 (-173.5 uncal um), Error = 0.9 uncal um, Median = 36442 (-173.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 36436 (-173.5 uncal um), Max = 36449 (-173.6 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 04:08:29.664 -07 000000455 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36442, posNoise = 7, negNoise = 6
17-03-18 04:08:29.664 -07 000000455 INF: Z Motor: After move to -0.174429, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:08:29.664 -07 000000455 INF: Z Motor: Settle wait time = 1449 ms, measure time = 106 ms (allowed 150 ms), total time = 1555 ms
17-03-18 04:08:29.664 -07 000000455 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-18 04:08:29.714 -07 000000455 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1612 ms
17-03-18 04:08:29.714 -07 000000455 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:08:29.714 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:08:29.714 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:08:29.714 -07 000000579 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:08:29.714 -07 000000611 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:08:29.724 -07 000000625 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:08:29.724 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:08:29.724 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:08:29.724 -07 000000625 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:08:29.724 -07 000000625 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 04:08:29.724 -07 000000625 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:08:29.734 -07 000000625 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 04:08:29.734 -07 000000625 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-18 04:08:29.734 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:08:29.774 -07 000000455 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:08:30.074 -07 000000611 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:08:30.074 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:08:30.074 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:08:30.084 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2415923248, 0x0, 559484976) start.
17-03-18 04:08:30.114 -07 000000447 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:08:30.114 -07 000000487 INF: FPGA: Recv CAMSNAP
17-03-18 04:08:30.114 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 379 ms to get response, and 384 ms overall
17-03-18 04:08:30.194 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2415923248, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 04:08:30.194 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:08:30.194 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 04:08:30.194 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 04:08:30.214 -07 000000501 INF: Autofocus start
17-03-18 04:08:30.214 -07 000000501 INF: MeasureProfile start
17-03-18 04:08:30.214 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:08:30.214 -07 000000579 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:08:30.224 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 04:08:30.224 -07 000000512 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:08:30.224 -07 000000501 INF: MeasureProfile done
17-03-18 04:08:30.224 -07 000000501 INF: X=-16  Z correction [um]=-0.1496812
17-03-18 04:08:30.224 -07 000000501 INF: Autofocus finished
17-03-18 04:08:30.424 -07 000000561 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:08:30.424 -07 000000512 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:08:30.424 -07 000000610 INF: ------------ Scan Snapping tile 13 at Y-position 69.86279296875, Z-position -0.174434490881188. ----------
17-03-18 04:08:30.424 -07 000000610 INF: Cycle	121	Tile	13	Exposure Settings		A	415	G	200	T	200	C	415
17-03-18 04:08:30.434 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36584, sync = True, waitForSettling = True)
17-03-18 04:08:30.434 -07 000000610 INF: Z Motor: Moving to -0.167471 mm, started at -0.174434 mm, distance = 6.96 um
17-03-18 04:08:30.434 -07 000000610 INF: FPGA: Xmit ZDACW 36584\n [Z Motor]
17-03-18 04:08:30.434 -07 000000447 INF: FPGA: Recv ZDACW
17-03-18 04:08:30.444 -07 000000610 INF: FPGA: 'ZDACW 36584' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 04:08:30.444 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:08:30.444 -07 000000590 INF: FPGA: Recv ZDACR 36584
17-03-18 04:08:30.454 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:30.454 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:08:30.604 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:30.604 -07 000000455 INF: FPGA: Recv ZSGSRD 35366
17-03-18 04:08:30.614 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:08:30.614 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:30.614 -07 000000444 INF: FPGA: Recv ZSGSRD 35356
17-03-18 04:08:30.624 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:30.624 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:30.624 -07 000000561 INF: FPGA: Recv ZSGSRD 35360
17-03-18 04:08:30.634 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:30.634 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:30.634 -07 000000618 INF: FPGA: Recv ZSGSRD 35354
17-03-18 04:08:30.644 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:30.644 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:30.644 -07 000000625 INF: FPGA: Recv ZSGSRD 35357
17-03-18 04:08:30.654 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:30.654 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:30.654 -07 000000444 INF: FPGA: Recv ZSGSRD 35357
17-03-18 04:08:30.664 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:30.664 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:30.664 -07 000000447 INF: FPGA: Recv ZSGSRD 35357
17-03-18 04:08:30.674 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:30.674 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:30.674 -07 000000455 INF: FPGA: Recv ZSGSRD 35357
17-03-18 04:08:30.684 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:30.684 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:30.684 -07 000000608 INF: FPGA: Recv ZSGSRD 35356
17-03-18 04:08:30.694 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:30.694 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:30.694 -07 000000618 INF: FPGA: Recv ZSGSRD 35361
17-03-18 04:08:30.704 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:30.704 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:08:30.704 -07 000000012 INF: FPGA: Recv ZPIEZORD 31043
17-03-18 04:08:30.714 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:30.714 -07 000000610 INF: Z Motor: Piezo is near 46.3 V (nominally 0 to 100 V), expect near 55.8 V, since DAC is at 5.582 V. Piezo Error = -9.5 V.
17-03-18 04:08:30.714 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.5 um, Read 10 ADC samples: Avg = 35358 (-166.6 uncal um), Error = 0.9 uncal um, Median = 35357 (-166.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35354 (-166.6 uncal um), Max = 35366 (-166.7 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 04:08:30.714 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35358, posNoise = 8, negNoise = 4
17-03-18 04:08:30.714 -07 000000610 INF: Z Motor: After move to -0.167471, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:08:30.714 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 04:08:30.714 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:08:30.714 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:08:30.714 -07 000000487 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:08:30.714 -07 000000447 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:08:30.714 -07 000000437 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:08:30.714 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:08:30.714 -07 000000444 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:08:30.714 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:08:30.714 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:08:30.714 -07 000000437 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:08:30.714 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:08:30.714 -07 000000444 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:08:30.724 -07 000000437 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 04:08:30.724 -07 000000437 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:08:30.724 -07 000000444 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 04:08:30.724 -07 000000444 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:08:30.734 -07 000000444 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms.
17-03-18 04:08:30.734 -07 000000444 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 18 ms.
17-03-18 04:08:30.734 -07 000000437 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 04:08:30.734 -07 000000437 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 19 ms.
17-03-18 04:08:30.734 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 415 415 200 200 36760 150\n [Camera]
17-03-18 04:08:30.934 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP turning red on 193
17-03-18 04:08:31.354 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 607
17-03-18 04:08:31.354 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 607
17-03-18 04:08:31.354 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:08:31.354 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:08:31.354 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 2334719600, 0x0, 391868352) start.
17-03-18 04:08:31.354 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 607
17-03-18 04:08:31.354 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 607
17-03-18 04:08:31.354 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:08:31.354 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:08:31.354 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2370141864, 0x0, 418435064) start.
17-03-18 04:08:31.464 -07 000000590 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 121, FrontChillerTemperature: 4.016692,
17-03-18 04:08:31.544 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36760 800
17-03-18 04:08:31.724 -07 000000444 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:08:31.724 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP turning grn on 950
17-03-18 04:08:31.724 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 120. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1718, R2=1787, Total=3505. Warn if over 250 bubbles per interval.
17-03-18 04:08:31.734 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2370141864, 0x0, 418435064) end. Duration was 379 ms.
17-03-18 04:08:31.734 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-18 04:08:31.734 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:08:31.744 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 2334719600, 0x0, 391868352) end. Duration was 387 ms.
17-03-18 04:08:31.744 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-18 04:08:31.744 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:08:31.744 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:08:31.744 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:08:31.744 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-18 04:08:31.744 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-18 04:08:31.894 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1151
17-03-18 04:08:31.894 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1151
17-03-18 04:08:31.894 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:08:31.904 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1151
17-03-18 04:08:31.904 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1151
17-03-18 04:08:31.904 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:08:31.904 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:08:31.904 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 04:08:31.904 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:08:31.904 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-18 04:08:32.084 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP 1342
17-03-18 04:08:32.084 -07 000000611 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:08:32.084 -07 000000610 INF: FPGA: 'CAMDBLSNAP 415 415 200 200 36760 150' command took 2 ms to send, 1337 ms to get response, and 1349 ms overall
17-03-18 04:08:32.084 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 04:08:32.084 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 14 at Y-position 69.86279296875, Z-Position -0.167470644919519. ------
17-03-18 04:08:32.094 -07 000000480 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:08:32.094 -07 000000618 INF: Y Motor: MoveYZ optimized starting. Moving Y to 70.7026 mm, moving Z to -0.17392 mm
17-03-18 04:08:32.094 -07 000000618 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:08:32.094 -07 000000437 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:08:32.094 -07 000000501 INF: Y Motor: Entering MoveAbsStepped (target = 113124 steps, sync = True, waitForSettling = True)
17-03-18 04:08:32.094 -07 000000501 INF: Y Motor: Moving to 70.7026 mm, started at 69.8628 mm, delta = 0.8398 mm
17-03-18 04:08:32.094 -07 000000012 INF: Z Motor: Entering MoveAbsStepped (DAC = 37994, sync = True, waitForSettling = False)
17-03-18 04:08:32.094 -07 000000012 INF: Z Motor: Moving to -0.173925 mm, started at -0.167471 mm, distance = -6.45 um
17-03-18 04:08:32.104 -07 000000480 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:08:32.104 -07 000000012 INF: FPGA: Xmit ZDACW 37994\n [Z Motor]
17-03-18 04:08:32.104 -07 000000455 INF: FPGA: Recv ZDACW
17-03-18 04:08:32.114 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:08:32.114 -07 000000012 INF: FPGA: 'ZDACW 37994' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-18 04:08:32.114 -07 000000455 INF: FPGA: Recv YRDPOS 143079
17-03-18 04:08:32.124 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 21 ms overall
17-03-18 04:08:32.124 -07 000000501 INF: Y Motor: Encoder = 143079 = motor step 111780.5 = 69.8628 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:08:32.124 -07 000000501 INF: Y Motor: Last commanded position = 69.8726 mm (111796.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:08:32.124 -07 000000501 INF: Y Motor: Moving 1344 steps-20
17-03-18 04:08:32.124 -07 000000480 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:08:32.134 -07 000000012 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:08:32.134 -07 000000561 INF: FPGA: Recv ZDACR 37994
17-03-18 04:08:32.144 -07 000000501 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:08:32.144 -07 000000012 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 04:08:32.144 -07 000000012 INF: Z Motor: MoveAbsStepped took 41 ms (did NOT wait for settling yet))
17-03-18 04:08:32.304 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 396 ms.
17-03-18 04:08:32.304 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 04:08:32.304 -07 000000625 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:08:32.304 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 400 ms.
17-03-18 04:08:32.304 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 04:08:32.304 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:08:32.304 -07 000000625 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:08:32.304 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-18 04:08:32.304 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:08:32.314 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-18 04:08:32.324 -07 000000455 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:08:32.324 -07 000000480 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 193 ms to get response, and 223 ms overall
17-03-18 04:08:32.514 -07 000000444 INF: FPGA: Recv YMVTILE
17-03-18 04:08:32.514 -07 000000501 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 04:08:32.564 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:08:32.564 -07 000000474 INF: FPGA: Recv YRDPOS 144769
17-03-18 04:08:32.574 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 04:08:32.574 -07 000000501 INF: Y Motor: Encoder = 144769 = motor step 113100.8 = 70.6880 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:08:32.574 -07 000000501 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-18 04:08:32.574 -07 000000501 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.840 mm, average velocity = 2.110 mm/sec
17-03-18 04:08:33.524 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:08:33.524 -07 000000608 INF: FPGA: Recv YRDPOS 144769
17-03-18 04:08:33.534 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:33.534 -07 000000501 INF: Y Motor: Encoder = 144769 = motor step 113100.8 = 70.6880 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:08:33.554 -07 000000501 INF: Y Motor: After move to 70.702606, error = -0.014618, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:08:33.554 -07 000000501 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:08:33.554 -07 000000501 INF: Y Motor: Moved to 70.6880 after 1461 ms (table move)
17-03-18 04:08:33.564 -07 000000618 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173925 mm (DAC = 37994)
17-03-18 04:08:33.564 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:33.564 -07 000000501 INF: FPGA: Recv ZSGSRD 36372
17-03-18 04:08:33.574 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 04:08:33.574 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:33.574 -07 000000474 INF: FPGA: Recv ZSGSRD 36361
17-03-18 04:08:33.584 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:33.584 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:33.584 -07 000000437 INF: FPGA: Recv ZSGSRD 36368
17-03-18 04:08:33.594 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:33.594 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:33.594 -07 000000444 INF: FPGA: Recv ZSGSRD 36368
17-03-18 04:08:33.604 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:33.604 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:33.604 -07 000000561 INF: FPGA: Recv ZSGSRD 36365
17-03-18 04:08:33.614 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:33.614 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:33.614 -07 000000512 INF: FPGA: Recv ZSGSRD 36366
17-03-18 04:08:33.624 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:33.624 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:33.624 -07 000000474 INF: FPGA: Recv ZSGSRD 36359
17-03-18 04:08:33.634 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:33.634 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:33.634 -07 000000447 INF: FPGA: Recv ZSGSRD 36362
17-03-18 04:08:33.644 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:33.644 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:33.644 -07 000000501 INF: FPGA: Recv ZSGSRD 36364
17-03-18 04:08:33.654 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:33.654 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:33.654 -07 000000579 INF: FPGA: Recv ZSGSRD 36362
17-03-18 04:08:33.664 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:33.664 -07 000000618 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:08:33.664 -07 000000437 INF: FPGA: Recv ZPIEZORD 32413
17-03-18 04:08:33.674 -07 000000618 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:33.674 -07 000000618 INF: Z Motor: Piezo is near 49.2 V (nominally 0 to 100 V), expect near 58.0 V, since DAC is at 5.798 V. Piezo Error = -8.7 V.
17-03-18 04:08:33.674 -07 000000618 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.9 um, Read 10 ADC samples: Avg = 36365 (-173.1 uncal um), Error = 0.9 uncal um, Median = 36364 (-173.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 36359 (-173.0 uncal um), Max = 36372 (-173.1 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 04:08:33.674 -07 000000618 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36365, posNoise = 7, negNoise = 6
17-03-18 04:08:33.674 -07 000000618 INF: Z Motor: After move to -0.173925, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:08:33.674 -07 000000618 INF: Z Motor: Settle wait time = 1465 ms, measure time = 107 ms (allowed 150 ms), total time = 1572 ms
17-03-18 04:08:33.674 -07 000000618 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-18 04:08:33.724 -07 000000618 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1626 ms
17-03-18 04:08:33.724 -07 000000618 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:08:33.724 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:08:33.724 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:08:33.724 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:08:33.724 -07 000000611 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:08:33.724 -07 000000487 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:08:33.724 -07 000000487 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:08:33.734 -07 000000487 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:08:33.734 -07 000000487 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:08:33.734 -07 000000487 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 04:08:33.734 -07 000000487 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:08:33.734 -07 000000487 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 04:08:33.734 -07 000000487 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-18 04:08:33.744 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:08:33.784 -07 000000012 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:08:34.084 -07 000000447 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:08:34.084 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:08:34.084 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:08:34.084 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 675221432, 0x0, 559484976) start.
17-03-18 04:08:34.124 -07 000000618 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:08:34.124 -07 000000579 INF: FPGA: Recv CAMSNAP
17-03-18 04:08:34.124 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 384 ms overall
17-03-18 04:08:34.204 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 675221432, 0x0, 559484976) end. Duration was 117 ms.
17-03-18 04:08:34.204 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:08:34.204 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 04:08:34.204 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-18 04:08:34.224 -07 000000611 INF: Autofocus start
17-03-18 04:08:34.224 -07 000000611 INF: MeasureProfile start
17-03-18 04:08:34.224 -07 000000625 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:08:34.224 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:08:34.234 -07 000000625 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 04:08:34.234 -07 000000625 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:08:34.234 -07 000000611 INF: MeasureProfile done
17-03-18 04:08:34.234 -07 000000611 INF: X=32  Z correction [um]=0.09220707
17-03-18 04:08:34.234 -07 000000611 INF: Autofocus finished
17-03-18 04:08:34.434 -07 000000444 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:08:34.434 -07 000000625 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 196 ms to get response, and 206 ms overall
17-03-18 04:08:34.444 -07 000000610 INF: ------------ Scan Snapping tile 14 at Y-position 70.68798828125, Z-position -0.173939826546272. ----------
17-03-18 04:08:34.444 -07 000000610 INF: Cycle	121	Tile	14	Exposure Settings		A	415	G	200	T	200	C	415
17-03-18 04:08:34.444 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36526, sync = True, waitForSettling = True)
17-03-18 04:08:34.444 -07 000000610 INF: Z Motor: Moving to -0.167205 mm, started at -0.173940 mm, distance = 6.73 um
17-03-18 04:08:34.444 -07 000000610 INF: FPGA: Xmit ZDACW 36526\n [Z Motor]
17-03-18 04:08:34.444 -07 000000618 INF: FPGA: Recv ZDACW
17-03-18 04:08:34.454 -07 000000610 INF: FPGA: 'ZDACW 36526' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 04:08:34.454 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:08:34.454 -07 000000447 INF: FPGA: Recv ZDACR 36526
17-03-18 04:08:34.464 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:34.464 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:08:34.614 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:34.614 -07 000000512 INF: FPGA: Recv ZSGSRD 35322
17-03-18 04:08:34.624 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:08:34.624 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:34.624 -07 000000625 INF: FPGA: Recv ZSGSRD 35318
17-03-18 04:08:34.634 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:34.634 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:34.634 -07 000000474 INF: FPGA: Recv ZSGSRD 35319
17-03-18 04:08:34.644 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:34.644 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:34.644 -07 000000447 INF: FPGA: Recv ZSGSRD 35322
17-03-18 04:08:34.654 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:34.654 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:34.654 -07 000000512 INF: FPGA: Recv ZSGSRD 35316
17-03-18 04:08:34.664 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:34.664 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:34.664 -07 000000625 INF: FPGA: Recv ZSGSRD 35321
17-03-18 04:08:34.674 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:34.674 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:34.674 -07 000000579 INF: FPGA: Recv ZSGSRD 35317
17-03-18 04:08:34.684 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:34.684 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:34.684 -07 000000480 INF: FPGA: Recv ZSGSRD 35320
17-03-18 04:08:34.694 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:34.694 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:34.694 -07 000000611 INF: FPGA: Recv ZSGSRD 35318
17-03-18 04:08:34.704 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:34.704 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:34.704 -07 000000625 INF: FPGA: Recv ZSGSRD 35320
17-03-18 04:08:34.714 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:34.714 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:08:34.714 -07 000000579 INF: FPGA: Recv ZPIEZORD 31016
17-03-18 04:08:34.724 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:34.724 -07 000000610 INF: Z Motor: Piezo is near 46.3 V (nominally 0 to 100 V), expect near 55.7 V, since DAC is at 5.574 V. Piezo Error = -9.5 V.
17-03-18 04:08:34.724 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.2 um, Read 10 ADC samples: Avg = 35319 (-166.4 uncal um), Error = 0.9 uncal um, Median = 35320 (-166.4 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 35316 (-166.3 uncal um), Max = 35322 (-166.4 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 04:08:34.724 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35319, posNoise = 3, negNoise = 3
17-03-18 04:08:34.724 -07 000000610 INF: Z Motor: After move to -0.167205, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:08:34.724 -07 000000610 INF: Z Motor: MoveAbsStepped took 274 ms)
17-03-18 04:08:34.724 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:08:34.724 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:08:34.724 -07 000000012 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:08:34.724 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:08:34.724 -07 000000474 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:08:34.724 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:08:34.724 -07 000000447 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:08:34.724 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:08:34.724 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:08:34.724 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:08:34.724 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:08:34.724 -07 000000447 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:08:34.734 -07 000000447 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 04:08:34.734 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 04:08:34.734 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:08:34.734 -07 000000447 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:08:34.744 -07 000000447 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 04:08:34.744 -07 000000447 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 04:08:34.744 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 04:08:34.744 -07 000000474 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 04:08:34.744 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 415 415 200 200 36703 150\n [Camera]
17-03-18 04:08:34.944 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:08:35.364 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 611
17-03-18 04:08:35.364 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 611
17-03-18 04:08:35.364 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:08:35.364 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:08:35.364 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 04:08:35.364 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 611
17-03-18 04:08:35.364 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 611
17-03-18 04:08:35.364 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:08:35.364 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:08:35.364 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start.
17-03-18 04:08:35.554 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36703 800
17-03-18 04:08:35.704 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP turning grn on 950
17-03-18 04:08:35.744 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 384 ms.
17-03-18 04:08:35.744 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-18 04:08:35.744 -07 000000444 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:08:35.754 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 382 ms.
17-03-18 04:08:35.754 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-18 04:08:35.754 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:08:35.754 -07 000000444 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:08:35.754 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-18 04:08:35.754 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:08:35.764 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-18 04:08:35.904 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1150
17-03-18 04:08:35.904 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1150
17-03-18 04:08:35.904 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:08:35.904 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:08:35.904 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) start.
17-03-18 04:08:35.904 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1150
17-03-18 04:08:35.904 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1150
17-03-18 04:08:35.904 -07 000000474 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:08:35.904 -07 000000474 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:08:35.904 -07 000000474 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 04:08:36.094 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP 1342
17-03-18 04:08:36.094 -07 000000561 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:08:36.094 -07 000000610 INF: FPGA: 'CAMDBLSNAP 415 415 200 200 36703 150' command took 2 ms to send, 1343 ms to get response, and 1350 ms overall
17-03-18 04:08:36.094 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 04:08:36.094 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 15 at Y-position 70.68798828125, Z-Position -0.16722010064599. ------
17-03-18 04:08:36.094 -07 000000012 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:08:36.094 -07 000000501 INF: Y Motor: MoveYZ optimized starting. Moving Y to 71.5326 mm, moving Z to -0.17389 mm
17-03-18 04:08:36.094 -07 000000501 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:08:36.104 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:08:36.104 -07 000000012 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 04:08:36.104 -07 000000012 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:08:36.104 -07 000000444 INF: Y Motor: Entering MoveAbsStepped (target = 114452 steps, sync = True, waitForSettling = True)
17-03-18 04:08:36.104 -07 000000444 INF: Y Motor: Moving to 71.5326 mm, started at 70.6880 mm, delta = 0.8446 mm
17-03-18 04:08:36.104 -07 000000590 INF: Z Motor: Entering MoveAbsStepped (DAC = 37985, sync = True, waitForSettling = False)
17-03-18 04:08:36.104 -07 000000590 INF: Z Motor: Moving to -0.173884 mm, started at -0.167220 mm, distance = -6.66 um
17-03-18 04:08:36.114 -07 000000444 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:08:36.114 -07 000000487 INF: FPGA: Recv YRDPOS 144769
17-03-18 04:08:36.124 -07 000000590 INF: FPGA: Xmit ZDACW 37985\n [Z Motor]
17-03-18 04:08:36.124 -07 000000444 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-18 04:08:36.124 -07 000000444 INF: Y Motor: Encoder = 144769 = motor step 113100.8 = 70.6880 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:08:36.124 -07 000000444 INF: Y Motor: Last commanded position = 70.7026 mm (113124.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:08:36.124 -07 000000444 INF: Y Motor: Moving 1351 steps-30
17-03-18 04:08:36.124 -07 000000561 INF: FPGA: Recv ZDACW
17-03-18 04:08:36.134 -07 000000590 INF: FPGA: 'ZDACW 37985' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-18 04:08:36.134 -07 000000590 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:08:36.134 -07 000000437 INF: FPGA: Recv ZDACR 37985
17-03-18 04:08:36.144 -07 000000590 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:36.144 -07 000000590 INF: Z Motor: MoveAbsStepped took 34 ms (did NOT wait for settling yet))
17-03-18 04:08:36.144 -07 000000444 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:08:36.294 -07 000000474 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 390 ms.
17-03-18 04:08:36.294 -07 000000474 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-18 04:08:36.294 -07 000000474 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:08:36.294 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) end. Duration was 396 ms.
17-03-18 04:08:36.294 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:08:36.294 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 04:08:36.294 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:08:36.304 -07 000000561 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:08:36.304 -07 000000012 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 196 ms to get response, and 202 ms overall
17-03-18 04:08:36.304 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 04:08:36.304 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 04:08:36.304 -07 000000474 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 04:08:36.514 -07 000000474 INF: FPGA: Recv YMVTILE
17-03-18 04:08:36.514 -07 000000444 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 04:08:36.564 -07 000000444 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:08:36.564 -07 000000474 INF: FPGA: Recv YRDPOS 146469
17-03-18 04:08:36.574 -07 000000444 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 04:08:36.574 -07 000000444 INF: Y Motor: Encoder = 146469 = motor step 114428.9 = 71.5181 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:08:36.574 -07 000000444 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-18 04:08:36.574 -07 000000444 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.845 mm, average velocity = 2.128 mm/sec
17-03-18 04:08:36.644 -07 000000474 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:08:36.644 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 120. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1718, R2=1787, Total=3505. Warn if over 250 bubbles per interval.
17-03-18 04:08:36.824 -07 000000611 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 121, FrontChillerTemperature: 4.027603,
17-03-18 04:08:37.524 -07 000000444 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:08:37.524 -07 000000579 INF: FPGA: Recv YRDPOS 146470
17-03-18 04:08:37.534 -07 000000444 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:37.534 -07 000000444 INF: Y Motor: Encoder = 146470 = motor step 114429.7 = 71.5186 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:08:37.564 -07 000000444 INF: Y Motor: After move to 71.532608, error = -0.014053, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:08:37.564 -07 000000444 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 04:08:37.564 -07 000000444 INF: Y Motor: Moved to 71.5186 after 1455 ms (table move)
17-03-18 04:08:37.564 -07 000000501 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173884 mm (DAC = 37985)
17-03-18 04:08:37.564 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:37.564 -07 000000512 INF: FPGA: Recv ZSGSRD 36366
17-03-18 04:08:37.574 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 04:08:37.574 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:37.574 -07 000000579 INF: FPGA: Recv ZSGSRD 36360
17-03-18 04:08:37.584 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:37.584 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:37.584 -07 000000437 INF: FPGA: Recv ZSGSRD 36360
17-03-18 04:08:37.594 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:37.594 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:37.594 -07 000000480 INF: FPGA: Recv ZSGSRD 36361
17-03-18 04:08:37.604 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:37.604 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:37.604 -07 000000512 INF: FPGA: Recv ZSGSRD 36362
17-03-18 04:08:37.614 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:37.614 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:37.614 -07 000000444 INF: FPGA: Recv ZSGSRD 36351
17-03-18 04:08:37.624 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:37.624 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:37.624 -07 000000487 INF: FPGA: Recv ZSGSRD 36353
17-03-18 04:08:37.634 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:37.634 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:37.634 -07 000000618 INF: FPGA: Recv ZSGSRD 36351
17-03-18 04:08:37.644 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:37.644 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:37.644 -07 000000590 INF: FPGA: Recv ZSGSRD 36360
17-03-18 04:08:37.654 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:37.654 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:37.654 -07 000000447 INF: FPGA: Recv ZSGSRD 36361
17-03-18 04:08:37.664 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:37.664 -07 000000501 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:08:37.664 -07 000000625 INF: FPGA: Recv ZPIEZORD 32395
17-03-18 04:08:37.674 -07 000000501 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:37.674 -07 000000501 INF: Z Motor: Piezo is near 49.2 V (nominally 0 to 100 V), expect near 58.0 V, since DAC is at 5.796 V. Piezo Error = -8.8 V.
17-03-18 04:08:37.674 -07 000000501 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.9 um, Read 10 ADC samples: Avg = 36358 (-173.0 uncal um), Error = 0.9 uncal um, Median = 36360 (-173.0 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 36351 (-173.0 uncal um), Max = 36366 (-173.1 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 04:08:37.674 -07 000000501 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36358, posNoise = 8, negNoise = 7
17-03-18 04:08:37.674 -07 000000501 INF: Z Motor: After move to -0.173884, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:08:37.674 -07 000000501 INF: Z Motor: Settle wait time = 1458 ms, measure time = 107 ms (allowed 150 ms), total time = 1565 ms
17-03-18 04:08:37.674 -07 000000501 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-18 04:08:37.724 -07 000000501 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1620 ms
17-03-18 04:08:37.724 -07 000000501 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:08:37.724 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:08:37.724 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:08:37.724 -07 000000480 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:08:37.724 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:08:37.724 -07 000000561 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:08:37.724 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:08:37.724 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:08:37.724 -07 000000561 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:08:37.734 -07 000000561 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 04:08:37.734 -07 000000561 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:08:37.734 -07 000000561 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 04:08:37.734 -07 000000561 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-18 04:08:37.744 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:08:37.784 -07 000000444 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:08:38.084 -07 000000611 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:08:38.084 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:08:38.084 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:08:38.084 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1201016592, 0x0, 559484976) start.
17-03-18 04:08:38.124 -07 000000618 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:08:38.124 -07 000000480 INF: FPGA: Recv CAMSNAP
17-03-18 04:08:38.124 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 2 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 04:08:38.204 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1201016592, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 04:08:38.204 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:08:38.204 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 04:08:38.204 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 04:08:38.224 -07 000000561 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:08:38.224 -07 000000625 INF: Autofocus start
17-03-18 04:08:38.224 -07 000000625 INF: MeasureProfile start
17-03-18 04:08:38.224 -07 000000455 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:08:38.234 -07 000000561 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:08:38.234 -07 000000561 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:08:38.234 -07 000000625 INF: MeasureProfile done
17-03-18 04:08:38.234 -07 000000625 INF: X=16  Z correction [um]=0.01042744
17-03-18 04:08:38.234 -07 000000625 INF: Autofocus finished
17-03-18 04:08:38.434 -07 000000474 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:08:38.434 -07 000000561 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:08:38.434 -07 000000610 INF: ------------ Scan Snapping tile 15 at Y-position 71.5185546875, Z-position -0.17389485706128. ----------
17-03-18 04:08:38.434 -07 000000610 INF: Cycle	121	Tile	15	Exposure Settings		A	415	G	200	T	200	C	415
17-03-18 04:08:38.444 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36500, sync = True, waitForSettling = True)
17-03-18 04:08:38.444 -07 000000610 INF: Z Motor: Moving to -0.167086 mm, started at -0.173895 mm, distance = 6.81 um
17-03-18 04:08:38.444 -07 000000610 INF: FPGA: Xmit ZDACW 36500\n [Z Motor]
17-03-18 04:08:38.444 -07 000000501 INF: FPGA: Recv ZDACW
17-03-18 04:08:38.454 -07 000000610 INF: FPGA: 'ZDACW 36500' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:38.454 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:08:38.454 -07 000000512 INF: FPGA: Recv ZDACR 36500
17-03-18 04:08:38.464 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:38.464 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:08:38.614 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:38.614 -07 000000487 INF: FPGA: Recv ZSGSRD 35304
17-03-18 04:08:38.624 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:08:38.624 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:38.624 -07 000000608 INF: FPGA: Recv ZSGSRD 35298
17-03-18 04:08:38.634 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:38.634 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:38.634 -07 000000501 INF: FPGA: Recv ZSGSRD 35300
17-03-18 04:08:38.644 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:38.644 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:38.644 -07 000000618 INF: FPGA: Recv ZSGSRD 35299
17-03-18 04:08:38.654 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:38.654 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:38.654 -07 000000012 INF: FPGA: Recv ZSGSRD 35301
17-03-18 04:08:38.664 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:38.664 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:38.664 -07 000000437 INF: FPGA: Recv ZSGSRD 35299
17-03-18 04:08:38.674 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 04:08:38.674 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:38.674 -07 000000501 INF: FPGA: Recv ZSGSRD 35295
17-03-18 04:08:38.684 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:38.684 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:38.684 -07 000000561 INF: FPGA: Recv ZSGSRD 35306
17-03-18 04:08:38.694 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:38.694 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:38.694 -07 000000480 INF: FPGA: Recv ZSGSRD 35300
17-03-18 04:08:38.704 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:38.704 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:38.704 -07 000000444 INF: FPGA: Recv ZSGSRD 35301
17-03-18 04:08:38.714 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:38.714 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:08:38.714 -07 000000501 INF: FPGA: Recv ZPIEZORD 30958
17-03-18 04:08:38.724 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:38.724 -07 000000610 INF: Z Motor: Piezo is near 46.1 V (nominally 0 to 100 V), expect near 55.7 V, since DAC is at 5.570 V. Piezo Error = -9.6 V.
17-03-18 04:08:38.724 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.1 um, Read 10 ADC samples: Avg = 35300 (-166.2 uncal um), Error = 0.9 uncal um, Median = 35300 (-166.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35295 (-166.2 uncal um), Max = 35306 (-166.3 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 04:08:38.724 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35300, posNoise = 6, negNoise = 5
17-03-18 04:08:38.724 -07 000000610 INF: Z Motor: After move to -0.167086, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:08:38.724 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-18 04:08:38.724 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:08:38.724 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:08:38.724 -07 000000487 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:08:38.724 -07 000000012 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:08:38.724 -07 000000444 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:08:38.724 -07 000000611 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:08:38.724 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:08:38.724 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:08:38.724 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:08:38.724 -07 000000611 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:08:38.724 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 04:08:38.724 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:08:38.734 -07 000000611 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-18 04:08:38.734 -07 000000611 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:08:38.734 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 04:08:38.734 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:08:38.744 -07 000000611 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 11 ms.
17-03-18 04:08:38.744 -07 000000611 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 04:08:38.744 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 11 ms.
17-03-18 04:08:38.744 -07 000000012 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 17 ms.
17-03-18 04:08:38.744 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 415 415 200 200 36677 150\n [Camera]
17-03-18 04:08:38.944 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:08:39.364 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 608
17-03-18 04:08:39.364 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 608
17-03-18 04:08:39.364 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:08:39.364 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:08:39.364 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 1428998304, 0x0, 391868352) start.
17-03-18 04:08:39.364 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 608
17-03-18 04:08:39.364 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 608
17-03-18 04:08:39.364 -07 000000487 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:08:39.364 -07 000000487 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:08:39.364 -07 000000487 INF: Camera: sBCa_ReadImage(785074704, 1464420568, 0x0, 418435064) start.
17-03-18 04:08:39.554 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36677 800
17-03-18 04:08:39.704 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP turning grn on 950
17-03-18 04:08:39.754 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 1428998304, 0x0, 391868352) end. Duration was 393 ms.
17-03-18 04:08:39.754 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-18 04:08:39.754 -07 000000474 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:08:39.754 -07 000000487 INF: Camera: sBCa_ReadImage(785074704, 1464420568, 0x0, 418435064) end. Duration was 390 ms.
17-03-18 04:08:39.754 -07 000000487 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-18 04:08:39.754 -07 000000487 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:08:39.764 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:08:39.764 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 04:08:39.764 -07 000000487 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:08:39.764 -07 000000487 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-18 04:08:39.904 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1150
17-03-18 04:08:39.904 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1150
17-03-18 04:08:39.904 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:08:39.904 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:08:39.904 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-18 04:08:39.904 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1150
17-03-18 04:08:39.904 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1150
17-03-18 04:08:39.904 -07 000000437 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:08:39.904 -07 000000437 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:08:39.904 -07 000000437 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-18 04:08:40.094 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP 1342
17-03-18 04:08:40.094 -07 000000444 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:08:40.094 -07 000000610 INF: FPGA: 'CAMDBLSNAP 415 415 200 200 36677 150' command took 2 ms to send, 1347 ms to get response, and 1350 ms overall
17-03-18 04:08:40.104 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 04:08:40.104 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 16 at Y-position 71.5185546875, Z-Position -0.167098040615297. ------
17-03-18 04:08:40.104 -07 000000561 INF: Y Motor: MoveYZ optimized starting. Moving Y to 72.3626 mm, moving Z to -0.17352 mm
17-03-18 04:08:40.104 -07 000000561 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:08:40.104 -07 000000474 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:08:40.104 -07 000000487 INF: Y Motor: Entering MoveAbsStepped (target = 115780 steps, sync = True, waitForSettling = True)
17-03-18 04:08:40.104 -07 000000487 INF: Y Motor: Moving to 72.3626 mm, started at 71.5186 mm, delta = 0.8441 mm
17-03-18 04:08:40.104 -07 000000480 INF: Z Motor: Entering MoveAbsStepped (DAC = 37905, sync = True, waitForSettling = False)
17-03-18 04:08:40.104 -07 000000480 INF: Z Motor: Moving to -0.173518 mm, started at -0.167098 mm, distance = -6.42 um
17-03-18 04:08:40.104 -07 000000012 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:08:40.114 -07 000000474 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 04:08:40.114 -07 000000487 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:08:40.114 -07 000000455 INF: FPGA: Recv YRDPOS 146470
17-03-18 04:08:40.124 -07 000000480 INF: FPGA: Xmit ZDACW 37905\n [Z Motor]
17-03-18 04:08:40.124 -07 000000487 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-18 04:08:40.124 -07 000000487 INF: Y Motor: Encoder = 146470 = motor step 114429.7 = 71.5186 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:08:40.124 -07 000000487 INF: Y Motor: Last commanded position = 71.5326 mm (114452.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:08:40.124 -07 000000487 INF: Y Motor: Moving 1350 steps-30
17-03-18 04:08:40.124 -07 000000590 INF: FPGA: Recv ZDACW
17-03-18 04:08:40.134 -07 000000474 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:08:40.134 -07 000000480 INF: FPGA: 'ZDACW 37905' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-18 04:08:40.144 -07 000000487 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:08:40.154 -07 000000480 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:08:40.154 -07 000000447 INF: FPGA: Recv ZDACR 37905
17-03-18 04:08:40.164 -07 000000480 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 04:08:40.164 -07 000000480 INF: Z Motor: MoveAbsStepped took 53 ms (did NOT wait for settling yet))
17-03-18 04:08:40.304 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 401 ms.
17-03-18 04:08:40.304 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 04:08:40.304 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:08:40.304 -07 000000437 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 400 ms.
17-03-18 04:08:40.304 -07 000000437 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 04:08:40.314 -07 000000437 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:08:40.314 -07 000000437 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:08:40.314 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 04:08:40.314 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms.
17-03-18 04:08:40.324 -07 000000437 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-18 04:08:40.334 -07 000000444 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:08:40.334 -07 000000474 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 04:08:40.514 -07 000000590 INF: FPGA: Recv YMVTILE
17-03-18 04:08:40.514 -07 000000487 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 367 ms to get response, and 397 ms overall
17-03-18 04:08:40.564 -07 000000487 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:08:40.564 -07 000000447 INF: FPGA: Recv YRDPOS 148171
17-03-18 04:08:40.574 -07 000000487 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 04:08:40.574 -07 000000487 INF: Y Motor: Encoder = 148171 = motor step 115758.6 = 72.3491 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:08:40.574 -07 000000487 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-18 04:08:40.574 -07 000000487 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.844 mm, average velocity = 2.126 mm/sec
17-03-18 04:08:41.524 -07 000000487 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:08:41.524 -07 000000501 INF: FPGA: Recv YRDPOS 148171
17-03-18 04:08:41.534 -07 000000487 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:41.534 -07 000000487 INF: Y Motor: Encoder = 148171 = motor step 115758.6 = 72.3491 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:08:41.564 -07 000000487 INF: Y Motor: After move to 72.362610, error = -0.013489, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:08:41.564 -07 000000487 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:08:41.564 -07 000000487 INF: Y Motor: Moved to 72.3491 after 1454 ms (table move)
17-03-18 04:08:41.564 -07 000000561 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173518 mm (DAC = 37905)
17-03-18 04:08:41.564 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:41.564 -07 000000579 INF: FPGA: Recv ZSGSRD 36307
17-03-18 04:08:41.574 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:08:41.574 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:41.574 -07 000000480 INF: FPGA: Recv ZSGSRD 36302
17-03-18 04:08:41.584 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:41.584 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:41.584 -07 000000501 INF: FPGA: Recv ZSGSRD 36297
17-03-18 04:08:41.594 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:41.594 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:41.594 -07 000000625 INF: FPGA: Recv ZSGSRD 36301
17-03-18 04:08:41.604 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:41.604 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:41.604 -07 000000512 INF: FPGA: Recv ZSGSRD 36304
17-03-18 04:08:41.614 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:41.614 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:41.614 -07 000000501 INF: FPGA: Recv ZSGSRD 36296
17-03-18 04:08:41.624 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:41.624 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:41.624 -07 000000012 INF: FPGA: Recv ZSGSRD 36300
17-03-18 04:08:41.634 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:41.634 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:41.634 -07 000000480 INF: FPGA: Recv ZSGSRD 36298
17-03-18 04:08:41.644 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:41.644 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:41.644 -07 000000625 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:08:41.644 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 120. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1718, R2=1787, Total=3505. Warn if over 250 bubbles per interval.
17-03-18 04:08:41.644 -07 000000512 INF: FPGA: Recv ZSGSRD 36299
17-03-18 04:08:41.654 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:41.654 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:41.654 -07 000000590 INF: FPGA: Recv ZSGSRD 36299
17-03-18 04:08:41.664 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:41.664 -07 000000561 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:08:41.664 -07 000000579 INF: FPGA: Recv ZPIEZORD 32333
17-03-18 04:08:41.674 -07 000000561 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:41.674 -07 000000561 INF: Z Motor: Piezo is near 49.1 V (nominally 0 to 100 V), expect near 57.8 V, since DAC is at 5.784 V. Piezo Error = -8.8 V.
17-03-18 04:08:41.674 -07 000000561 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.5 um, Read 10 ADC samples: Avg = 36300 (-172.6 uncal um), Error = 0.9 uncal um, Median = 36300 (-172.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 36296 (-172.6 uncal um), Max = 36307 (-172.7 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 04:08:41.674 -07 000000561 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36300, posNoise = 7, negNoise = 4
17-03-18 04:08:41.674 -07 000000561 INF: Z Motor: After move to -0.173518, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:08:41.674 -07 000000561 INF: Z Motor: Settle wait time = 1456 ms, measure time = 109 ms (allowed 150 ms), total time = 1565 ms
17-03-18 04:08:41.674 -07 000000561 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-18 04:08:41.724 -07 000000561 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1615 ms
17-03-18 04:08:41.724 -07 000000561 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:08:41.724 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:08:41.724 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:08:41.724 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:08:41.724 -07 000000611 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:08:41.724 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:08:41.724 -07 000000447 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:08:41.724 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:08:41.724 -07 000000611 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:08:41.724 -07 000000611 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 04:08:41.724 -07 000000611 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:08:41.744 -07 000000611 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-18 04:08:41.744 -07 000000611 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-18 04:08:41.744 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:08:41.794 -07 000000474 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:08:42.094 -07 000000608 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:08:42.094 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:08:42.094 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:08:42.094 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2218332320, 0x0, 559484976) start.
17-03-18 04:08:42.134 -07 000000487 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:08:42.134 -07 000000579 INF: FPGA: Recv CAMSNAP
17-03-18 04:08:42.134 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 381 ms to get response, and 384 ms overall
17-03-18 04:08:42.184 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 121, FrontChillerTemperature: 3.986717,
17-03-18 04:08:42.204 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2218332320, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 04:08:42.204 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:08:42.214 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 04:08:42.214 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 04:08:42.234 -07 000000561 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:08:42.234 -07 000000012 INF: Autofocus start
17-03-18 04:08:42.234 -07 000000012 INF: MeasureProfile start
17-03-18 04:08:42.234 -07 000000625 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:08:42.244 -07 000000561 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:08:42.244 -07 000000561 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:08:42.244 -07 000000012 INF: MeasureProfile done
17-03-18 04:08:42.254 -07 000000012 INF: X=-16  Z correction [um]=-0.1496812
17-03-18 04:08:42.254 -07 000000012 INF: Autofocus finished
17-03-18 04:08:42.444 -07 000000487 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:08:42.444 -07 000000561 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:08:42.444 -07 000000610 INF: ------------ Scan Snapping tile 16 at Y-position 72.34912109375, Z-position -0.173522252757058. ----------
17-03-18 04:08:42.444 -07 000000610 INF: Cycle	121	Tile	16	Exposure Settings		A	415	G	200	T	200	C	415
17-03-18 04:08:42.454 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36384, sync = True, waitForSettling = True)
17-03-18 04:08:42.454 -07 000000610 INF: Z Motor: Moving to -0.166555 mm, started at -0.173522 mm, distance = 6.97 um
17-03-18 04:08:42.454 -07 000000610 INF: FPGA: Xmit ZDACW 36384\n [Z Motor]
17-03-18 04:08:42.454 -07 000000625 INF: FPGA: Recv ZDACW
17-03-18 04:08:42.464 -07 000000610 INF: FPGA: 'ZDACW 36384' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 04:08:42.464 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:08:42.464 -07 000000590 INF: FPGA: Recv ZDACR 36384
17-03-18 04:08:42.474 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:42.474 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:08:42.624 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:42.624 -07 000000474 INF: FPGA: Recv ZSGSRD 35215
17-03-18 04:08:42.634 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:08:42.644 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:42.644 -07 000000455 INF: FPGA: Recv ZSGSRD 35223
17-03-18 04:08:42.654 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 04:08:42.654 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:42.654 -07 000000611 INF: FPGA: Recv ZSGSRD 35214
17-03-18 04:08:42.664 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:42.674 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:42.674 -07 000000625 INF: FPGA: Recv ZSGSRD 35222
17-03-18 04:08:42.684 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 04:08:42.694 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:42.694 -07 000000012 INF: FPGA: Recv ZSGSRD 35215
17-03-18 04:08:42.704 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 04:08:42.704 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:42.704 -07 000000501 INF: FPGA: Recv ZSGSRD 35214
17-03-18 04:08:42.714 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:42.724 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:42.724 -07 000000455 INF: FPGA: Recv ZSGSRD 35219
17-03-18 04:08:42.734 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 04:08:42.734 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:42.734 -07 000000474 INF: FPGA: Recv ZSGSRD 35221
17-03-18 04:08:42.744 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:42.744 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:42.744 -07 000000480 INF: FPGA: Recv ZSGSRD 35213
17-03-18 04:08:42.754 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:42.754 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:42.754 -07 000000561 INF: FPGA: Recv ZSGSRD 35217
17-03-18 04:08:42.764 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:42.764 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:08:42.764 -07 000000611 INF: FPGA: Recv ZPIEZORD 30884
17-03-18 04:08:42.774 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:42.774 -07 000000610 INF: Z Motor: Piezo is near 46.0 V (nominally 0 to 100 V), expect near 55.5 V, since DAC is at 5.552 V. Piezo Error = -9.5 V.
17-03-18 04:08:42.774 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.6 um, Read 10 ADC samples: Avg = 35217 (-165.7 uncal um), Error = 0.9 uncal um, Median = 35216 (-165.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35213 (-165.7 uncal um), Max = 35223 (-165.7 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 04:08:42.774 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35217, posNoise = 6, negNoise = 4
17-03-18 04:08:42.774 -07 000000610 INF: Z Motor: After move to -0.166555, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:08:42.774 -07 000000610 INF: Z Motor: MoveAbsStepped took 319 ms)
17-03-18 04:08:42.774 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:08:42.774 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:08:42.774 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:08:42.774 -07 000000444 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:08:42.774 -07 000000608 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:08:42.774 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:08:42.774 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:08:42.774 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:08:42.774 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:08:42.774 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:08:42.774 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:08:42.774 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:08:42.784 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 04:08:42.784 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 04:08:42.784 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:08:42.784 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:08:42.794 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 04:08:42.794 -07 000000608 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 04:08:42.794 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 04:08:42.794 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 04:08:42.794 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 415 415 200 200 36561 150\n [Camera]
17-03-18 04:08:42.994 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:08:43.404 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 607
17-03-18 04:08:43.404 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 607
17-03-18 04:08:43.414 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:08:43.414 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:08:43.414 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 2233008400, 0x0, 391868352) start.
17-03-18 04:08:43.414 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 607
17-03-18 04:08:43.414 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 607
17-03-18 04:08:43.414 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:08:43.414 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:08:43.414 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-18 04:08:43.604 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36561 800
17-03-18 04:08:43.754 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP turning grn on 950
17-03-18 04:08:43.794 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 385 ms.
17-03-18 04:08:43.794 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-18 04:08:43.794 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:08:43.794 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 2233008400, 0x0, 391868352) end. Duration was 387 ms.
17-03-18 04:08:43.794 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-18 04:08:43.794 -07 000000444 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:08:43.804 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:08:43.804 -07 000000444 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:08:43.804 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-18 04:08:43.814 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-18 04:08:43.954 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1150
17-03-18 04:08:43.954 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1150
17-03-18 04:08:43.954 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:08:43.954 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:08:43.954 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) start.
17-03-18 04:08:43.954 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1150
17-03-18 04:08:43.954 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1150
17-03-18 04:08:43.954 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:08:43.954 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:08:43.954 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 2503642840, 0x0, 418435064) start.
17-03-18 04:08:44.144 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP 1343
17-03-18 04:08:44.144 -07 000000455 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:08:44.144 -07 000000610 INF: FPGA: 'CAMDBLSNAP 415 415 200 200 36561 150' command took 2 ms to send, 1344 ms to get response, and 1350 ms overall
17-03-18 04:08:44.144 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 04:08:44.144 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 17 at Y-position 72.34912109375, Z-Position -0.166564831007531. ------
17-03-18 04:08:44.154 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:08:44.154 -07 000000579 INF: Y Motor: MoveYZ optimized starting. Moving Y to 73.1926 mm, moving Z to -0.17300 mm
17-03-18 04:08:44.154 -07 000000579 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:08:44.154 -07 000000480 INF: Y Motor: Entering MoveAbsStepped (target = 117108 steps, sync = True, waitForSettling = True)
17-03-18 04:08:44.154 -07 000000480 INF: Y Motor: Moving to 73.1926 mm, started at 72.3491 mm, delta = 0.8435 mm
17-03-18 04:08:44.154 -07 000000474 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:08:44.154 -07 000000611 INF: Z Motor: Entering MoveAbsStepped (DAC = 37793, sync = True, waitForSettling = False)
17-03-18 04:08:44.154 -07 000000611 INF: Z Motor: Moving to -0.173005 mm, started at -0.166565 mm, distance = -6.44 um
17-03-18 04:08:44.164 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:44.164 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:08:44.164 -07 000000474 INF: FPGA: Recv YRDPOS 148171
17-03-18 04:08:44.174 -07 000000611 INF: FPGA: Xmit ZDACW 37793\n [Z Motor]
17-03-18 04:08:44.174 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-18 04:08:44.174 -07 000000480 INF: Y Motor: Encoder = 148171 = motor step 115758.6 = 72.3491 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:08:44.174 -07 000000480 INF: Y Motor: Last commanded position = 72.3626 mm (115780.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:08:44.174 -07 000000480 INF: Y Motor: Moving 1350 steps-28
17-03-18 04:08:44.174 -07 000000447 INF: FPGA: Recv ZDACW
17-03-18 04:08:44.184 -07 000000501 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:08:44.184 -07 000000611 INF: FPGA: 'ZDACW 37793' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-18 04:08:44.194 -07 000000480 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:08:44.204 -07 000000611 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:08:44.204 -07 000000444 INF: FPGA: Recv ZDACR 37793
17-03-18 04:08:44.214 -07 000000611 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 04:08:44.214 -07 000000611 INF: Z Motor: MoveAbsStepped took 53 ms (did NOT wait for settling yet))
17-03-18 04:08:44.344 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 2503642840, 0x0, 418435064) end. Duration was 389 ms.
17-03-18 04:08:44.344 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-18 04:08:44.344 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:08:44.344 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) end. Duration was 394 ms.
17-03-18 04:08:44.344 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-18 04:08:44.344 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:08:44.344 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:08:44.354 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 04:08:44.354 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 04:08:44.354 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 04:08:44.384 -07 000000590 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:08:44.384 -07 000000501 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 04:08:44.564 -07 000000625 INF: FPGA: Recv YMVTILE
17-03-18 04:08:44.564 -07 000000480 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 367 ms to get response, and 397 ms overall
17-03-18 04:08:44.614 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:08:44.624 -07 000000618 INF: FPGA: Recv YRDPOS 149863
17-03-18 04:08:44.624 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 04:08:44.624 -07 000000480 INF: Y Motor: Encoder = 149863 = motor step 117080.5 = 73.1753 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:08:44.624 -07 000000480 INF: Y Motor: Position error before settling (table move) = -35 encoder counts (-0.017 mm)
17-03-18 04:08:44.624 -07 000000480 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.843 mm, average velocity = 2.125 mm/sec
17-03-18 04:08:45.574 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:08:45.574 -07 000000501 INF: FPGA: Recv YRDPOS 149864
17-03-18 04:08:45.584 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:08:45.584 -07 000000480 INF: Y Motor: Encoder = 149864 = motor step 117081.3 = 73.1758 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:08:45.614 -07 000000480 INF: Y Motor: After move to 73.192604, error = -0.016823, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:08:45.614 -07 000000480 INF: Y Motor: Position error after settling (table move) = -34 encoder counts (-0.017 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 04:08:45.614 -07 000000480 INF: Y Motor: Moved to 73.1758 after 1456 ms (table move)
17-03-18 04:08:45.614 -07 000000579 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173005 mm (DAC = 37793)
17-03-18 04:08:45.614 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:45.614 -07 000000487 INF: FPGA: Recv ZSGSRD 36228
17-03-18 04:08:45.624 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:08:45.624 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:45.624 -07 000000611 INF: FPGA: Recv ZSGSRD 36220
17-03-18 04:08:45.634 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:45.634 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:45.634 -07 000000487 INF: FPGA: Recv ZSGSRD 36225
17-03-18 04:08:45.644 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:45.644 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:45.644 -07 000000618 INF: FPGA: Recv ZSGSRD 36224
17-03-18 04:08:45.654 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:45.654 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:45.654 -07 000000455 INF: FPGA: Recv ZSGSRD 36227
17-03-18 04:08:45.664 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:45.664 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:45.664 -07 000000437 INF: FPGA: Recv ZSGSRD 36218
17-03-18 04:08:45.674 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:45.674 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:45.674 -07 000000561 INF: FPGA: Recv ZSGSRD 36216
17-03-18 04:08:45.684 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:45.684 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:45.684 -07 000000474 INF: FPGA: Recv ZSGSRD 36216
17-03-18 04:08:45.694 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:45.694 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:45.694 -07 000000590 INF: FPGA: Recv ZSGSRD 36216
17-03-18 04:08:45.704 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:45.704 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:45.704 -07 000000608 INF: FPGA: Recv ZSGSRD 36226
17-03-18 04:08:45.714 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:45.714 -07 000000579 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:08:45.714 -07 000000447 INF: FPGA: Recv ZPIEZORD 32251
17-03-18 04:08:45.724 -07 000000579 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:45.724 -07 000000579 INF: Z Motor: Piezo is near 48.9 V (nominally 0 to 100 V), expect near 57.7 V, since DAC is at 5.767 V. Piezo Error = -8.8 V.
17-03-18 04:08:45.724 -07 000000579 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.0 um, Read 10 ADC samples: Avg = 36222 (-172.1 uncal um), Error = 0.9 uncal um, Median = 36222 (-172.1 uncal um), StdDev = 5 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 36216 (-172.1 uncal um), Max = 36228 (-172.2 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 04:08:45.724 -07 000000579 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36222, posNoise = 6, negNoise = 6
17-03-18 04:08:45.724 -07 000000579 INF: Z Motor: After move to -0.173005, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:08:45.724 -07 000000579 INF: Z Motor: Settle wait time = 1456 ms, measure time = 107 ms (allowed 150 ms), total time = 1563 ms
17-03-18 04:08:45.724 -07 000000579 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-18 04:08:45.774 -07 000000579 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1619 ms
17-03-18 04:08:45.774 -07 000000579 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:08:45.774 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:08:45.774 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:08:45.774 -07 000000012 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:08:45.774 -07 000000437 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:08:45.774 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:08:45.774 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:08:45.774 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 04:08:45.774 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:08:45.784 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 04:08:45.784 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:08:45.784 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 04:08:45.784 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 04:08:45.794 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:08:45.834 -07 000000487 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:08:46.134 -07 000000625 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:08:46.134 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:08:46.134 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:08:46.134 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2268430664, 0x0, 559484976) start.
17-03-18 04:08:46.174 -07 000000608 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:08:46.174 -07 000000480 INF: FPGA: Recv CAMSNAP
17-03-18 04:08:46.174 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 04:08:46.254 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2268430664, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 04:08:46.254 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:08:46.254 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 04:08:46.254 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 04:08:46.274 -07 000000512 INF: Autofocus start
17-03-18 04:08:46.274 -07 000000512 INF: MeasureProfile start
17-03-18 04:08:46.274 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:08:46.274 -07 000000625 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:08:46.284 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 04:08:46.284 -07 000000501 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:08:46.284 -07 000000512 INF: MeasureProfile done
17-03-18 04:08:46.284 -07 000000512 INF: X=32  Z correction [um]=0.09220707
17-03-18 04:08:46.284 -07 000000512 INF: Autofocus finished
17-03-18 04:08:46.484 -07 000000480 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:08:46.484 -07 000000501 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:08:46.484 -07 000000610 INF: ------------ Scan Snapping tile 17 at Y-position 73.17578125, Z-position -0.17302116421. ----------
17-03-18 04:08:46.484 -07 000000610 INF: Cycle	121	Tile	17	Exposure Settings		A	415	G	200	T	200	C	415
17-03-18 04:08:46.494 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36325, sync = True, waitForSettling = True)
17-03-18 04:08:46.494 -07 000000610 INF: Z Motor: Moving to -0.166285 mm, started at -0.173021 mm, distance = 6.74 um
17-03-18 04:08:46.494 -07 000000610 INF: FPGA: Xmit ZDACW 36325\n [Z Motor]
17-03-18 04:08:46.494 -07 000000611 INF: FPGA: Recv ZDACW
17-03-18 04:08:46.504 -07 000000610 INF: FPGA: 'ZDACW 36325' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 04:08:46.504 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:08:46.504 -07 000000579 INF: FPGA: Recv ZDACR 36325
17-03-18 04:08:46.514 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:46.514 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:08:46.644 -07 000000437 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:08:46.644 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 120. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1718, R2=1787, Total=3505. Warn if over 250 bubbles per interval.
17-03-18 04:08:46.664 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:46.664 -07 000000444 INF: FPGA: Recv ZSGSRD 35180
17-03-18 04:08:46.674 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:46.674 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:46.674 -07 000000611 INF: FPGA: Recv ZSGSRD 35176
17-03-18 04:08:46.684 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:46.684 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:46.684 -07 000000012 INF: FPGA: Recv ZSGSRD 35180
17-03-18 04:08:46.694 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:46.694 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:46.694 -07 000000447 INF: FPGA: Recv ZSGSRD 35171
17-03-18 04:08:46.704 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:46.704 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:46.704 -07 000000487 INF: FPGA: Recv ZSGSRD 35176
17-03-18 04:08:46.714 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:46.714 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:46.714 -07 000000474 INF: FPGA: Recv ZSGSRD 35178
17-03-18 04:08:46.724 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:46.724 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:46.724 -07 000000579 INF: FPGA: Recv ZSGSRD 35171
17-03-18 04:08:46.734 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:46.734 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:46.734 -07 000000444 INF: FPGA: Recv ZSGSRD 35179
17-03-18 04:08:46.744 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:46.744 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:46.744 -07 000000455 INF: FPGA: Recv ZSGSRD 35173
17-03-18 04:08:46.754 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:46.754 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:46.754 -07 000000474 INF: FPGA: Recv ZSGSRD 35178
17-03-18 04:08:46.764 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:46.764 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:08:46.764 -07 000000608 INF: FPGA: Recv ZPIEZORD 30868
17-03-18 04:08:46.774 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:46.774 -07 000000610 INF: Z Motor: Piezo is near 45.9 V (nominally 0 to 100 V), expect near 55.4 V, since DAC is at 5.543 V. Piezo Error = -9.5 V.
17-03-18 04:08:46.774 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.3 um, Read 10 ADC samples: Avg = 35176 (-165.4 uncal um), Error = 0.8 uncal um, Median = 35177 (-165.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35171 (-165.4 uncal um), Max = 35180 (-165.5 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 04:08:46.774 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35176, posNoise = 4, negNoise = 5
17-03-18 04:08:46.774 -07 000000610 INF: Z Motor: After move to -0.166285, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:08:46.774 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 04:08:46.774 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:08:46.774 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:08:46.774 -07 000000444 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:08:46.774 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:08:46.774 -07 000000474 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:08:46.774 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:08:46.774 -07 000000455 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:08:46.774 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:08:46.774 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:08:46.774 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:08:46.774 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 04:08:46.774 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:08:46.784 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 04:08:46.784 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:08:46.784 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 04:08:46.784 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:08:46.794 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 04:08:46.794 -07 000000474 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 04:08:46.794 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 04:08:46.794 -07 000000455 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 04:08:46.794 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 415 415 200 200 36502 150\n [Camera]
17-03-18 04:08:46.994 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:08:47.404 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 607
17-03-18 04:08:47.404 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 607
17-03-18 04:08:47.404 -07 000000487 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:08:47.404 -07 000000487 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:08:47.404 -07 000000487 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) start.
17-03-18 04:08:47.414 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 607
17-03-18 04:08:47.414 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 607
17-03-18 04:08:47.414 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:08:47.414 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:08:47.414 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) start.
17-03-18 04:08:47.544 -07 000000608 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 121, FrontChillerTemperature: 3.962185,
17-03-18 04:08:47.604 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36502 800
17-03-18 04:08:47.754 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP turning grn on 950
17-03-18 04:08:47.804 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) end. Duration was 387 ms.
17-03-18 04:08:47.804 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-18 04:08:47.804 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:08:47.804 -07 000000487 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) end. Duration was 390 ms.
17-03-18 04:08:47.804 -07 000000487 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-18 04:08:47.804 -07 000000487 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:08:47.804 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:08:47.804 -07 000000487 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:08:47.804 -07 000000487 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 04:08:47.814 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 04:08:47.954 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1150
17-03-18 04:08:47.954 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1150
17-03-18 04:08:47.954 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:08:47.954 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:08:47.954 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 2620985504, 0x0, 391868352) start.
17-03-18 04:08:47.954 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1150
17-03-18 04:08:47.954 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1150
17-03-18 04:08:47.954 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:08:48.104 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:08:48.104 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-18 04:08:48.144 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP 1342
17-03-18 04:08:48.144 -07 000000437 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:08:48.144 -07 000000610 INF: FPGA: 'CAMDBLSNAP 415 415 200 200 36502 150' command took 2 ms to send, 1343 ms to get response, and 1349 ms overall
17-03-18 04:08:48.144 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 04:08:48.144 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 18 at Y-position 73.17578125, Z-Position -0.166301438309718. ------
17-03-18 04:08:48.144 -07 000000579 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:08:48.144 -07 000000512 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.0226 mm, moving Z to -0.17225 mm
17-03-18 04:08:48.144 -07 000000512 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:08:48.154 -07 000000487 INF: Y Motor: Entering MoveAbsStepped (target = 118436 steps, sync = True, waitForSettling = True)
17-03-18 04:08:48.154 -07 000000487 INF: Y Motor: Moving to 74.0226 mm, started at 73.1758 mm, delta = 0.8468 mm
17-03-18 04:08:48.154 -07 000000618 INF: Z Motor: Entering MoveAbsStepped (DAC = 37628, sync = True, waitForSettling = False)
17-03-18 04:08:48.154 -07 000000618 INF: Z Motor: Moving to -0.172250 mm, started at -0.166301 mm, distance = -5.95 um
17-03-18 04:08:48.154 -07 000000487 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:08:48.154 -07 000000608 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:08:48.154 -07 000000579 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 04:08:48.154 -07 000000608 INF: FPGA: Recv YRDPOS 149864
17-03-18 04:08:48.164 -07 000000618 INF: FPGA: Xmit ZDACW 37628\n [Z Motor]
17-03-18 04:08:48.164 -07 000000487 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 04:08:48.164 -07 000000487 INF: Y Motor: Encoder = 149864 = motor step 117081.3 = 73.1758 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:08:48.164 -07 000000487 INF: Y Motor: Last commanded position = 73.1926 mm (117108.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:08:48.164 -07 000000487 INF: Y Motor: Moving 1355 steps-35
17-03-18 04:08:48.164 -07 000000437 INF: FPGA: Recv ZDACW
17-03-18 04:08:48.174 -07 000000618 INF: FPGA: 'ZDACW 37628' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-18 04:08:48.174 -07 000000579 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:08:48.184 -07 000000487 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:08:48.194 -07 000000618 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:08:48.194 -07 000000012 INF: FPGA: Recv ZDACR 37628
17-03-18 04:08:48.204 -07 000000618 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-18 04:08:48.204 -07 000000618 INF: Z Motor: MoveAbsStepped took 49 ms (did NOT wait for settling yet))
17-03-18 04:08:48.364 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 2620985504, 0x0, 391868352) end. Duration was 414 ms.
17-03-18 04:08:48.364 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 414 ms.
17-03-18 04:08:48.364 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:08:48.374 -07 000000501 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:08:48.374 -07 000000579 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 221 ms overall
17-03-18 04:08:48.374 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 04:08:48.374 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 421 ms.
17-03-18 04:08:48.494 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 392 ms.
17-03-18 04:08:48.494 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-18 04:08:48.494 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:08:48.494 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-18 04:08:48.504 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 549 ms.
17-03-18 04:08:48.554 -07 000000608 INF: FPGA: Recv YMVTILE
17-03-18 04:08:48.554 -07 000000487 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 04:08:48.594 -07 000000487 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:08:48.604 -07 000000618 INF: FPGA: Recv YRDPOS 151567
17-03-18 04:08:48.604 -07 000000487 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 04:08:48.604 -07 000000487 INF: Y Motor: Encoder = 151567 = motor step 118411.7 = 74.0073 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:08:48.604 -07 000000487 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-18 04:08:48.604 -07 000000487 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.847 mm, average velocity = 2.133 mm/sec
17-03-18 04:08:49.554 -07 000000487 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:08:49.554 -07 000000455 INF: FPGA: Recv YRDPOS 151568
17-03-18 04:08:49.564 -07 000000487 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:49.564 -07 000000487 INF: Y Motor: Encoder = 151568 = motor step 118412.5 = 74.0078 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:08:49.584 -07 000000487 INF: Y Motor: After move to 74.022606, error = -0.014793, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:08:49.584 -07 000000487 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 04:08:49.584 -07 000000487 INF: Y Motor: Moved to 74.0078 after 1432 ms (table move)
17-03-18 04:08:49.584 -07 000000512 INF: Z Motor: EndOfMoveAbsStepped: target = -0.172250 mm (DAC = 37628)
17-03-18 04:08:49.584 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:49.584 -07 000000590 INF: FPGA: Recv ZSGSRD 36113
17-03-18 04:08:49.594 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 04:08:49.594 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:49.594 -07 000000579 INF: FPGA: Recv ZSGSRD 36106
17-03-18 04:08:49.604 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:49.604 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:49.604 -07 000000447 INF: FPGA: Recv ZSGSRD 36101
17-03-18 04:08:49.614 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:49.614 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:49.614 -07 000000625 INF: FPGA: Recv ZSGSRD 36100
17-03-18 04:08:49.624 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:49.624 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:49.624 -07 000000561 INF: FPGA: Recv ZSGSRD 36106
17-03-18 04:08:49.634 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:49.634 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:49.634 -07 000000579 INF: FPGA: Recv ZSGSRD 36111
17-03-18 04:08:49.644 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:49.644 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:49.644 -07 000000455 INF: FPGA: Recv ZSGSRD 36104
17-03-18 04:08:49.654 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:49.654 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:49.654 -07 000000480 INF: FPGA: Recv ZSGSRD 36102
17-03-18 04:08:49.664 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:49.664 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:49.664 -07 000000012 INF: FPGA: Recv ZSGSRD 36099
17-03-18 04:08:49.674 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:49.674 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:49.674 -07 000000474 INF: FPGA: Recv ZSGSRD 36103
17-03-18 04:08:49.684 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:49.684 -07 000000512 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:08:49.684 -07 000000611 INF: FPGA: Recv ZPIEZORD 32089
17-03-18 04:08:49.694 -07 000000512 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:49.694 -07 000000512 INF: Z Motor: Piezo is near 48.6 V (nominally 0 to 100 V), expect near 57.4 V, since DAC is at 5.742 V. Piezo Error = -8.9 V.
17-03-18 04:08:49.694 -07 000000512 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.2 um, Read 10 ADC samples: Avg = 36104 (-171.4 uncal um), Error = 0.9 uncal um, Median = 36104 (-171.4 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 36099 (-171.4 uncal um), Max = 36113 (-171.4 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 04:08:49.694 -07 000000512 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36104, posNoise = 9, negNoise = 5
17-03-18 04:08:49.694 -07 000000512 INF: Z Motor: After move to -0.172250, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:08:49.694 -07 000000512 INF: Z Motor: Settle wait time = 1435 ms, measure time = 104 ms (allowed 150 ms), total time = 1539 ms
17-03-18 04:08:49.694 -07 000000512 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-18 04:08:49.744 -07 000000512 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1591 ms
17-03-18 04:08:49.744 -07 000000512 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:08:49.744 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:08:49.744 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:08:49.744 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:08:49.744 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:08:49.744 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:08:49.744 -07 000000625 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:08:49.744 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:08:49.744 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:08:49.754 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 04:08:49.754 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:08:49.764 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 04:08:49.764 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-18 04:08:49.764 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:08:49.814 -07 000000512 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:08:50.114 -07 000000447 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:08:50.114 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:08:50.114 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:08:50.114 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 608668944, 0x0, 559484976) start.
17-03-18 04:08:50.154 -07 000000579 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:08:50.154 -07 000000487 INF: FPGA: Recv CAMSNAP
17-03-18 04:08:50.154 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 381 ms to get response, and 384 ms overall
17-03-18 04:08:50.234 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 608668944, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 04:08:50.234 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:08:50.234 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 04:08:50.234 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-18 04:08:50.254 -07 000000561 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:08:50.254 -07 000000012 INF: Autofocus start
17-03-18 04:08:50.254 -07 000000012 INF: MeasureProfile start
17-03-18 04:08:50.254 -07 000000474 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:08:50.264 -07 000000561 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:08:50.264 -07 000000561 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:08:50.274 -07 000000012 INF: MeasureProfile done
17-03-18 04:08:50.274 -07 000000012 INF: X=16  Z correction [um]=0.01042744
17-03-18 04:08:50.274 -07 000000012 INF: Autofocus finished
17-03-18 04:08:50.464 -07 000000447 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:08:50.464 -07 000000561 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 203 ms overall
17-03-18 04:08:50.464 -07 000000610 INF: ------------ Scan Snapping tile 18 at Y-position 74.0078125, Z-position -0.172263107177273. ----------
17-03-18 04:08:50.464 -07 000000610 INF: Cycle	121	Tile	18	Exposure Settings		A	415	G	200	T	200	C	415
17-03-18 04:08:50.474 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36142, sync = True, waitForSettling = True)
17-03-18 04:08:50.474 -07 000000610 INF: Z Motor: Moving to -0.165447 mm, started at -0.172263 mm, distance = 6.82 um
17-03-18 04:08:50.474 -07 000000610 INF: FPGA: Xmit ZDACW 36142\n [Z Motor]
17-03-18 04:08:50.474 -07 000000590 INF: FPGA: Recv ZDACW
17-03-18 04:08:50.484 -07 000000610 INF: FPGA: 'ZDACW 36142' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 04:08:50.484 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:08:50.484 -07 000000444 INF: FPGA: Recv ZDACR 36142
17-03-18 04:08:50.494 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:50.494 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:08:50.644 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:50.644 -07 000000618 INF: FPGA: Recv ZSGSRD 35041
17-03-18 04:08:50.654 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:08:50.654 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:50.654 -07 000000447 INF: FPGA: Recv ZSGSRD 35051
17-03-18 04:08:50.664 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:50.664 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:50.664 -07 000000487 INF: FPGA: Recv ZSGSRD 35042
17-03-18 04:08:50.674 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:50.674 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:50.674 -07 000000625 INF: FPGA: Recv ZSGSRD 35038
17-03-18 04:08:50.684 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:50.684 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:50.684 -07 000000501 INF: FPGA: Recv ZSGSRD 35047
17-03-18 04:08:50.694 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:50.694 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:50.694 -07 000000590 INF: FPGA: Recv ZSGSRD 35047
17-03-18 04:08:50.704 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:50.704 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:50.704 -07 000000608 INF: FPGA: Recv ZSGSRD 35051
17-03-18 04:08:50.714 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:50.714 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:50.714 -07 000000625 INF: FPGA: Recv ZSGSRD 35044
17-03-18 04:08:50.724 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:50.724 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:50.724 -07 000000501 INF: FPGA: Recv ZSGSRD 35047
17-03-18 04:08:50.734 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:50.734 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:50.734 -07 000000012 INF: FPGA: Recv ZSGSRD 35045
17-03-18 04:08:50.744 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:50.744 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:08:50.744 -07 000000608 INF: FPGA: Recv ZPIEZORD 30686
17-03-18 04:08:50.754 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:50.754 -07 000000610 INF: Z Motor: Piezo is near 45.6 V (nominally 0 to 100 V), expect near 55.1 V, since DAC is at 5.515 V. Piezo Error = -9.6 V.
17-03-18 04:08:50.754 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -165.4 um, Read 10 ADC samples: Avg = 35045 (-164.6 uncal um), Error = 0.9 uncal um, Median = 35046 (-164.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 35038 (-164.6 uncal um), Max = 35051 (-164.6 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 04:08:50.754 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35045, posNoise = 6, negNoise = 7
17-03-18 04:08:50.754 -07 000000610 INF: Z Motor: After move to -0.165447, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:08:50.754 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 04:08:50.754 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:08:50.754 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:08:50.754 -07 000000590 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:08:50.754 -07 000000012 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:08:50.754 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:08:50.754 -07 000000455 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:08:50.754 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:08:50.754 -07 000000437 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:08:50.754 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:08:50.754 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:08:50.754 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:08:50.754 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:08:50.764 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 04:08:50.764 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:08:50.764 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 04:08:50.764 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:08:50.764 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 04:08:50.764 -07 000000455 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 04:08:50.764 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 04:08:50.764 -07 000000012 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 04:08:50.774 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 415 415 200 200 36319 150\n [Camera]
17-03-18 04:08:50.974 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:08:51.384 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 607
17-03-18 04:08:51.384 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 607
17-03-18 04:08:51.384 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:08:51.394 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 607
17-03-18 04:08:51.394 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 607
17-03-18 04:08:51.394 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:08:51.404 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:08:51.404 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) start.
17-03-18 04:08:51.404 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:08:51.404 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) start.
17-03-18 04:08:51.584 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36319 800
17-03-18 04:08:51.644 -07 000000474 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:08:51.644 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 120. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1718, R2=1787, Total=3505. Warn if over 250 bubbles per interval.
17-03-18 04:08:51.734 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP turning grn on 950
17-03-18 04:08:51.774 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) end. Duration was 369 ms.
17-03-18 04:08:51.774 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 369 ms.
17-03-18 04:08:51.774 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:08:51.774 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:08:51.784 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) end. Duration was 378 ms.
17-03-18 04:08:51.784 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-18 04:08:51.784 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:08:51.784 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-18 04:08:51.784 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:08:51.784 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 04:08:51.934 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1150
17-03-18 04:08:51.934 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1150
17-03-18 04:08:51.934 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:08:52.054 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1150
17-03-18 04:08:52.054 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1150
17-03-18 04:08:52.054 -07 000000444 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:08:52.054 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:08:52.054 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 04:08:52.054 -07 000000444 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:08:52.054 -07 000000444 INF: Camera: sBCa_ReadImage(785074704, 2334719600, 0x0, 418435064) start.
17-03-18 04:08:52.124 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP 1342
17-03-18 04:08:52.124 -07 000000487 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:08:52.124 -07 000000610 INF: FPGA: 'CAMDBLSNAP 415 415 200 200 36319 150' command took 2 ms to send, 1343 ms to get response, and 1349 ms overall
17-03-18 04:08:52.124 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 04:08:52.124 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 19 at Y-position 74.0078125, Z-Position -0.165459866519148. ------
17-03-18 04:08:52.124 -07 000000618 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:08:52.124 -07 000000561 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.8526 mm, moving Z to -0.17172 mm
17-03-18 04:08:52.124 -07 000000561 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:08:52.134 -07 000000608 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:08:52.134 -07 000000618 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 04:08:52.134 -07 000000625 INF: Y Motor: Entering MoveAbsStepped (target = 119764 steps, sync = True, waitForSettling = True)
17-03-18 04:08:52.134 -07 000000625 INF: Y Motor: Moving to 74.8526 mm, started at 74.0078 mm, delta = 0.8448 mm
17-03-18 04:08:52.134 -07 000000618 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:08:52.134 -07 000000012 INF: Z Motor: Entering MoveAbsStepped (DAC = 37513, sync = True, waitForSettling = False)
17-03-18 04:08:52.134 -07 000000012 INF: Z Motor: Moving to -0.171724 mm, started at -0.165460 mm, distance = -6.26 um
17-03-18 04:08:52.144 -07 000000625 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:08:52.144 -07 000000447 INF: FPGA: Recv YRDPOS 151568
17-03-18 04:08:52.154 -07 000000012 INF: FPGA: Xmit ZDACW 37513\n [Z Motor]
17-03-18 04:08:52.154 -07 000000625 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-18 04:08:52.154 -07 000000625 INF: Y Motor: Encoder = 151568 = motor step 118412.5 = 74.0078 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:08:52.154 -07 000000625 INF: Y Motor: Last commanded position = 74.0226 mm (118436.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:08:52.154 -07 000000625 INF: Y Motor: Moving 1352 steps-31
17-03-18 04:08:52.154 -07 000000480 INF: FPGA: Recv ZDACW
17-03-18 04:08:52.164 -07 000000012 INF: FPGA: 'ZDACW 37513' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-18 04:08:52.164 -07 000000625 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:08:52.174 -07 000000012 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:08:52.174 -07 000000480 INF: FPGA: Recv ZDACR 37513
17-03-18 04:08:52.184 -07 000000012 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-18 04:08:52.184 -07 000000012 INF: Z Motor: MoveAbsStepped took 47 ms (did NOT wait for settling yet))
17-03-18 04:08:52.334 -07 000000611 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:08:52.344 -07 000000618 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 202 ms to get response, and 210 ms overall
17-03-18 04:08:52.454 -07 000000444 INF: Camera: sBCa_ReadImage(785074704, 2334719600, 0x0, 418435064) end. Duration was 403 ms.
17-03-18 04:08:52.454 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 403 ms.
17-03-18 04:08:52.454 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 04:08:52.454 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:08:52.454 -07 000000444 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-18 04:08:52.454 -07 000000444 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:08:52.464 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:08:52.464 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 529 ms.
17-03-18 04:08:52.464 -07 000000444 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:08:52.464 -07 000000444 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 416 ms.
17-03-18 04:08:52.544 -07 000000455 INF: FPGA: Recv YMVTILE
17-03-18 04:08:52.544 -07 000000625 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 371 ms to get response, and 390 ms overall
17-03-18 04:08:52.574 -07 000000625 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:08:52.574 -07 000000611 INF: FPGA: Recv YRDPOS 153254
17-03-18 04:08:52.584 -07 000000625 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:52.584 -07 000000625 INF: Y Motor: Encoder = 153254 = motor step 119729.7 = 74.8311 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:08:52.584 -07 000000625 INF: Y Motor: Position error before settling (table move) = -44 encoder counts (-0.021 mm)
17-03-18 04:08:52.584 -07 000000625 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 391 ms, distance = 0.845 mm, average velocity = 2.161 mm/sec
17-03-18 04:08:52.904 -07 000000437 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 121, FrontChillerTemperature: 4.008536,
17-03-18 04:08:53.534 -07 000000625 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:08:53.534 -07 000000437 INF: FPGA: Recv YRDPOS 153254
17-03-18 04:08:53.544 -07 000000625 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:08:53.544 -07 000000625 INF: Y Motor: Encoder = 153254 = motor step 119729.7 = 74.8311 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:08:53.554 -07 000000625 INF: Y Motor: After move to 74.852608, error = -0.021553, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:08:53.554 -07 000000625 INF: Y Motor: Position error after settling (table move) = -44 encoder counts (-0.021 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:08:53.554 -07 000000625 INF: Y Motor: Moved to 74.8311 after 1427 ms (table move)
17-03-18 04:08:53.564 -07 000000561 INF: Z Motor: EndOfMoveAbsStepped: target = -0.171724 mm (DAC = 37513)
17-03-18 04:08:53.564 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:53.564 -07 000000579 INF: FPGA: Recv ZSGSRD 36029
17-03-18 04:08:53.574 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 04:08:53.574 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:53.574 -07 000000437 INF: FPGA: Recv ZSGSRD 36027
17-03-18 04:08:53.584 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:53.584 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:53.584 -07 000000012 INF: FPGA: Recv ZSGSRD 36022
17-03-18 04:08:53.594 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:53.594 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:53.594 -07 000000487 INF: FPGA: Recv ZSGSRD 36025
17-03-18 04:08:53.604 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:53.604 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:53.604 -07 000000455 INF: FPGA: Recv ZSGSRD 36018
17-03-18 04:08:53.614 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:53.614 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:53.614 -07 000000480 INF: FPGA: Recv ZSGSRD 36015
17-03-18 04:08:53.624 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:53.624 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:53.624 -07 000000480 INF: FPGA: Recv ZSGSRD 36023
17-03-18 04:08:53.634 -07 000000561 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:53.634 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:53.634 -07 000000447 INF: FPGA: Recv ZSGSRD 36016
17-03-18 04:08:53.644 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:53.644 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:53.644 -07 000000447 INF: FPGA: Recv ZSGSRD 36029
17-03-18 04:08:53.654 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:53.654 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:53.654 -07 000000625 INF: FPGA: Recv ZSGSRD 36026
17-03-18 04:08:53.664 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:53.664 -07 000000561 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:08:53.664 -07 000000579 INF: FPGA: Recv ZPIEZORD 31999
17-03-18 04:08:53.674 -07 000000561 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:53.674 -07 000000561 INF: Z Motor: Piezo is near 48.4 V (nominally 0 to 100 V), expect near 57.2 V, since DAC is at 5.724 V. Piezo Error = -8.9 V.
17-03-18 04:08:53.674 -07 000000561 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.7 um, Read 10 ADC samples: Avg = 36023 (-170.9 uncal um), Error = 0.9 uncal um, Median = 36024 (-170.9 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 36015 (-170.8 uncal um), Max = 36029 (-170.9 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 04:08:53.674 -07 000000561 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36023, posNoise = 6, negNoise = 8
17-03-18 04:08:53.674 -07 000000561 INF: Z Motor: After move to -0.171724, error = -0.000019, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:08:53.674 -07 000000561 INF: Z Motor: Settle wait time = 1429 ms, measure time = 108 ms (allowed 150 ms), total time = 1537 ms
17-03-18 04:08:53.674 -07 000000561 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-18 04:08:53.724 -07 000000561 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1591 ms
17-03-18 04:08:53.724 -07 000000561 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:08:53.724 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:08:53.724 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:08:53.724 -07 000000012 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:08:53.724 -07 000000625 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:08:53.724 -07 000000447 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:08:53.724 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:08:53.724 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:08:53.724 -07 000000447 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:08:53.734 -07 000000447 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 04:08:53.734 -07 000000447 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:08:53.734 -07 000000447 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 04:08:53.734 -07 000000447 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 04:08:53.744 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:08:53.784 -07 000000455 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:08:54.084 -07 000000608 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:08:54.084 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:08:54.084 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:08:54.084 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2298580584, 0x0, 559484976) start.
17-03-18 04:08:54.124 -07 000000474 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:08:54.124 -07 000000512 INF: FPGA: Recv CAMSNAP
17-03-18 04:08:54.124 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 375 ms to get response, and 384 ms overall
17-03-18 04:08:54.204 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2298580584, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 04:08:54.204 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:08:54.204 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 04:08:54.204 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 04:08:54.224 -07 000000611 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:08:54.224 -07 000000480 INF: Autofocus start
17-03-18 04:08:54.224 -07 000000480 INF: MeasureProfile start
17-03-18 04:08:54.224 -07 000000512 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:08:54.234 -07 000000611 INF: FPGA: 'FOCMRRCUR 80' command took 1 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:08:54.234 -07 000000611 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:08:54.234 -07 000000480 INF: MeasureProfile done
17-03-18 04:08:54.234 -07 000000480 INF: X=-16  Z correction [um]=-0.1496812
17-03-18 04:08:54.234 -07 000000480 INF: Autofocus finished
17-03-18 04:08:54.434 -07 000000501 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:08:54.434 -07 000000611 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:08:54.434 -07 000000610 INF: ------------ Scan Snapping tile 19 at Y-position 74.8310546875, Z-position -0.17174274599379. ----------
17-03-18 04:08:54.444 -07 000000610 INF: Cycle	121	Tile	19	Exposure Settings		A	415	G	200	T	200	C	415
17-03-18 04:08:54.454 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 35992, sync = True, waitForSettling = True)
17-03-18 04:08:54.454 -07 000000610 INF: Z Motor: Moving to -0.164761 mm, started at -0.171743 mm, distance = 6.98 um
17-03-18 04:08:54.454 -07 000000610 INF: FPGA: Xmit ZDACW 35992\n [Z Motor]
17-03-18 04:08:54.464 -07 000000487 INF: FPGA: Recv ZDACW
17-03-18 04:08:54.464 -07 000000610 INF: FPGA: 'ZDACW 35992' command took 0 ms to send, 4 ms to get response, and 5 ms overall
17-03-18 04:08:54.464 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:08:54.464 -07 000000618 INF: FPGA: Recv ZDACR 35992
17-03-18 04:08:54.474 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 04:08:54.474 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:08:54.624 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:54.624 -07 000000455 INF: FPGA: Recv ZSGSRD 34939
17-03-18 04:08:54.634 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:08:54.634 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:54.634 -07 000000625 INF: FPGA: Recv ZSGSRD 34938
17-03-18 04:08:54.644 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:54.644 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:54.644 -07 000000608 INF: FPGA: Recv ZSGSRD 34936
17-03-18 04:08:54.654 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:54.654 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:54.654 -07 000000474 INF: FPGA: Recv ZSGSRD 34936
17-03-18 04:08:54.664 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:54.664 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:54.664 -07 000000512 INF: FPGA: Recv ZSGSRD 34937
17-03-18 04:08:54.674 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:54.674 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:54.674 -07 000000437 INF: FPGA: Recv ZSGSRD 34938
17-03-18 04:08:54.684 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:54.684 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:54.684 -07 000000579 INF: FPGA: Recv ZSGSRD 34936
17-03-18 04:08:54.694 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:54.694 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:54.694 -07 000000480 INF: FPGA: Recv ZSGSRD 34942
17-03-18 04:08:54.704 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:54.704 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:54.704 -07 000000447 INF: FPGA: Recv ZSGSRD 34935
17-03-18 04:08:54.714 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:54.714 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:08:54.714 -07 000000437 INF: FPGA: Recv ZSGSRD 34933
17-03-18 04:08:54.724 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:54.724 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:08:54.724 -07 000000501 INF: FPGA: Recv ZPIEZORD 30537
17-03-18 04:08:54.734 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:08:54.734 -07 000000610 INF: Z Motor: Piezo is near 45.2 V (nominally 0 to 100 V), expect near 54.9 V, since DAC is at 5.492 V. Piezo Error = -9.7 V.
17-03-18 04:08:54.734 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -164.8 um, Read 10 ADC samples: Avg = 34937 (-163.9 uncal um), Error = 0.9 uncal um, Median = 34936 (-163.9 uncal um), StdDev = 2 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 34933 (-163.9 uncal um), Max = 34942 (-163.9 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 04:08:54.734 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 34937, posNoise = 5, negNoise = 4
17-03-18 04:08:54.734 -07 000000610 INF: Z Motor: After move to -0.164761, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:08:54.734 -07 000000610 INF: Z Motor: MoveAbsStepped took 272 ms)
17-03-18 04:08:54.734 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:08:54.734 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:08:54.734 -07 000000625 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:08:54.734 -07 000000012 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:08:54.734 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:08:54.734 -07 000000437 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:08:54.734 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:08:54.734 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-18 04:08:54.734 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:08:54.734 -07 000000590 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:08:54.734 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:08:54.734 -07 000000437 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:08:54.744 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 04:08:54.744 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:08:54.744 -07 000000437 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 04:08:54.744 -07 000000437 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:08:54.754 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 04:08:54.754 -07 000000012 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 04:08:54.754 -07 000000437 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 04:08:54.754 -07 000000437 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 04:08:54.754 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 415 415 200 200 36169 150\n [Camera]
17-03-18 04:08:54.954 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:08:55.374 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 607
17-03-18 04:08:55.374 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 607
17-03-18 04:08:55.374 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:08:55.374 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:08:55.374 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 2370141864, 0x0, 391868352) start.
17-03-18 04:08:55.374 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 607
17-03-18 04:08:55.374 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 607
17-03-18 04:08:55.374 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:08:55.374 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:08:55.374 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 04:08:55.564 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36169 800
17-03-18 04:08:55.714 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP turning grn on 950
17-03-18 04:08:55.764 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 384 ms.
17-03-18 04:08:55.764 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-18 04:08:55.764 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:08:55.764 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 2370141864, 0x0, 391868352) end. Duration was 387 ms.
17-03-18 04:08:55.764 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-18 04:08:55.764 -07 000000625 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:08:55.764 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:08:55.764 -07 000000625 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:08:55.764 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-18 04:08:55.774 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 04:08:55.914 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1150
17-03-18 04:08:55.914 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1150
17-03-18 04:08:55.914 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:08:55.914 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:08:55.914 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) start.
17-03-18 04:08:55.924 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1150
17-03-18 04:08:55.924 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1150
17-03-18 04:08:55.924 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:08:55.924 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:08:55.924 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) start.
17-03-18 04:08:56.104 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP 1342
17-03-18 04:08:56.104 -07 000000618 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:08:56.104 -07 000000610 INF: FPGA: 'CAMDBLSNAP 415 415 200 200 36169 150' command took 2 ms to send, 1339 ms to get response, and 1349 ms overall
17-03-18 04:08:56.314 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) end. Duration was 391 ms.
17-03-18 04:08:56.314 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-18 04:08:56.314 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:08:56.314 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) end. Duration was 396 ms.
17-03-18 04:08:56.314 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 04:08:56.314 -07 000000474 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:08:56.314 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:08:56.324 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 04:08:56.324 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 04:08:56.324 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) start.
17-03-18 04:08:56.324 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 406 ms.
17-03-18 04:08:56.364 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) end. Duration was 42 ms.
17-03-18 04:08:56.364 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) start.
17-03-18 04:08:56.404 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) end. Duration was 43 ms.
17-03-18 04:08:56.404 -07 000000610 INF: Move compensator for Bottom-surface imaging.
17-03-18 04:08:56.414 -07 000000610 INF: FPGA: Xmit EMCUR 80\n [Compensator]
17-03-18 04:08:56.414 -07 000000437 INF: FPGA: Recv EMCUR 
17-03-18 04:08:56.424 -07 000000610 INF: FPGA: 'EMCUR 80' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:08:56.424 -07 000000610 INF: FPGA: Xmit EMIN 20 40\n [Compensator]
17-03-18 04:08:56.644 -07 000000455 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:08:56.644 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 120. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1718, R2=1787, Total=3505. Warn if over 250 bubbles per interval.
17-03-18 04:08:56.924 -07 000000480 INF: FPGA: Recv EMIN
17-03-18 04:08:56.924 -07 000000610 INF: FPGA: 'EMIN 20 40' command took 0 ms to send, 493 ms to get response, and 502 ms overall
17-03-18 04:08:56.924 -07 000000610 INF: FPGA: Xmit EMCUR 60\n [Compensator]
17-03-18 04:08:56.924 -07 000000590 INF: FPGA: Recv EMCUR 
17-03-18 04:08:56.934 -07 000000610 INF: FPGA: 'EMCUR 60' command took 1 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:08:56.934 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 04:08:56.934 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 1 at Y-position 74.8310546875, Z-Position -0.164766051607838. ------
17-03-18 04:08:56.934 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:08:56.934 -07 000000579 INF: Y Motor: MoveYZ optimized starting. Moving Y to 59.9126 mm, moving Z to -0.13930 mm
17-03-18 04:08:56.934 -07 000000579 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:08:56.934 -07 000000512 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True)
17-03-18 04:08:56.934 -07 000000512 INF: Y Motor: Moving to 59.9126 mm, started at 74.8311 mm, delta = -14.9184 mm
17-03-18 04:08:56.934 -07 000000561 INF: Z Motor: Entering MoveAbsStepped (DAC = 30429, sync = True, waitForSettling = False)
17-03-18 04:08:56.934 -07 000000590 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:08:56.934 -07 000000561 INF: Z Motor: Moving to -0.139295 mm, started at -0.164766 mm, distance = 25.47 um
17-03-18 04:08:56.944 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 04:08:56.944 -07 000000561 INF: FPGA: Xmit ZDACW 30429\n [Z Motor]
17-03-18 04:08:56.944 -07 000000618 INF: FPGA: Recv ZDACW
17-03-18 04:08:56.954 -07 000000561 INF: FPGA: 'ZDACW 30429' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-18 04:08:56.954 -07 000000501 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:08:56.964 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:08:56.964 -07 000000590 INF: FPGA: Recv YRDPOS 153256
17-03-18 04:08:56.974 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 32 ms overall
17-03-18 04:08:56.974 -07 000000512 INF: Y Motor: Encoder = 153256 = motor step 119731.3 = 74.8320 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:08:56.974 -07 000000561 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:08:56.974 -07 000000625 INF: FPGA: Recv ZDACR 30429
17-03-18 04:08:56.984 -07 000000561 INF: FPGA: 'ZDACR' command took 1 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 04:08:56.984 -07 000000561 INF: Z Motor: MoveAbsStepped took 42 ms (did NOT wait for settling yet))
17-03-18 04:08:56.984 -07 000000512 INF: Y Motor: Last commanded position = 74.8526 mm (119764.2 steps), delta from last commanded position = -14.9400 mm (-23904.0 steps). UsingTableMove = False
17-03-18 04:08:56.984 -07 000000512 INF: Y Motor: Moving to 122701 encoder counts
17-03-18 04:08:56.984 -07 000000512 INF: FPGA: Xmit YMVTO 122701\n [Y Motor]
17-03-18 04:08:57.154 -07 000000437 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:08:57.154 -07 000000501 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 212 ms overall
17-03-18 04:08:58.264 -07 000000501 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 121, FrontChillerTemperature: 4.027603,
17-03-18 04:08:58.604 -07 000000437 INF: FPGA: Recv YMVTO 122703 23903
17-03-18 04:08:58.604 -07 000000512 INF: FPGA: 'YMVTO 122701' command took 0 ms to send, 1618 ms to get response, and 1628 ms overall
17-03-18 04:08:58.604 -07 000000512 INF: Y Motor: Position error before settling = 2 encoder counts (0.001 mm)
17-03-18 04:08:58.604 -07 000000512 INF: Y Motor: To move from 74.832 to 59.913 (-14.918 mm) should take 23871 steps, but required 23903 steps (14.939 mm). Slippage = 0.020 mm (0.00%).
17-03-18 04:08:58.614 -07 000000512 INF: Y Motor: FPGA move command 'YMVTO 122701' took 1628 ms, distance = 14.918 mm, average velocity = 9.164 mm/sec
17-03-18 04:09:01.464 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:09:01.464 -07 000000012 INF: FPGA: Recv YRDPOS 122698
17-03-18 04:09:01.474 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:01.474 -07 000000512 INF: Y Motor: Encoder = 122698 = motor step 95857.8 = 59.9111 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:09:01.504 -07 000000512 INF: Y Motor: After move to 59.912609, error = -0.001476, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:09:01.504 -07 000000512 INF: Y Motor: Position error after settling = -3 encoder counts (-0.001 mm), Delta during settling = -5 counts (-0.002 mm)
17-03-18 04:09:01.504 -07 000000512 INF: Y Motor: Moved to 59.9111 after 4572 ms
17-03-18 04:09:01.514 -07 000000579 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139295 mm (DAC = 30429)
17-03-18 04:09:01.514 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:01.514 -07 000000501 INF: FPGA: Recv ZSGSRD 30978
17-03-18 04:09:01.524 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:09:01.524 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:01.524 -07 000000480 INF: FPGA: Recv ZSGSRD 30970
17-03-18 04:09:01.534 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:01.534 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:01.534 -07 000000487 INF: FPGA: Recv ZSGSRD 30968
17-03-18 04:09:01.544 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:01.544 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:01.544 -07 000000590 INF: FPGA: Recv ZSGSRD 30978
17-03-18 04:09:01.554 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:01.554 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:01.554 -07 000000474 INF: FPGA: Recv ZSGSRD 30977
17-03-18 04:09:01.564 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:01.564 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:01.564 -07 000000437 INF: FPGA: Recv ZSGSRD 30969
17-03-18 04:09:01.574 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:01.574 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:01.574 -07 000000444 INF: FPGA: Recv ZSGSRD 30969
17-03-18 04:09:01.584 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:01.584 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:01.584 -07 000000512 INF: FPGA: Recv ZSGSRD 30973
17-03-18 04:09:01.594 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:01.594 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:01.594 -07 000000501 INF: FPGA: Recv ZSGSRD 30979
17-03-18 04:09:01.604 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:01.604 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:01.604 -07 000000480 INF: FPGA: Recv ZSGSRD 30972
17-03-18 04:09:01.614 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:01.614 -07 000000579 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:09:01.614 -07 000000455 INF: FPGA: Recv ZPIEZORD 26381
17-03-18 04:09:01.624 -07 000000579 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:01.624 -07 000000579 INF: Z Motor: Piezo is near 36.4 V (nominally 0 to 100 V), expect near 46.4 V, since DAC is at 4.643 V. Piezo Error = -10.1 V.
17-03-18 04:09:01.624 -07 000000579 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.3 um, Read 10 ADC samples: Avg = 30973 (-138.5 uncal um), Error = 0.8 uncal um, Median = 30972 (-138.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 30968 (-138.5 uncal um), Max = 30979 (-138.5 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 04:09:01.624 -07 000000579 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30973, posNoise = 6, negNoise = 5
17-03-18 04:09:01.624 -07 000000579 INF: Z Motor: After move to -0.139295, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:09:01.624 -07 000000579 INF: Z Motor: Settle wait time = 4575 ms, measure time = 107 ms (allowed 150 ms), total time = 4682 ms
17-03-18 04:09:01.624 -07 000000579 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-18 04:09:01.644 -07 000000444 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:09:01.644 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 120. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1718, R2=1787, Total=3505. Warn if over 250 bubbles per interval.
17-03-18 04:09:01.674 -07 000000579 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 4735 ms
17-03-18 04:09:01.674 -07 000000579 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:09:01.674 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:09:01.674 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:09:01.674 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:09:01.674 -07 000000608 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:09:01.674 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:09:01.674 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:09:01.674 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:09:01.684 -07 000000608 INF: Camera: sBCa_SetPowerMode(785074288, 1) start.
17-03-18 04:09:01.704 -07 000000608 INF: Camera: sBCa_SetPowerMode(785074288, 1) end. Duration was 24 ms.
17-03-18 04:09:01.704 -07 000000608 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:09:01.704 -07 000000608 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms.
17-03-18 04:09:01.704 -07 000000608 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:09:01.724 -07 000000608 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 04:09:01.724 -07 000000608 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 42 ms.
17-03-18 04:09:01.724 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:09:01.764 -07 000000608 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:09:02.064 -07 000000501 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:09:02.064 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:09:02.074 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:09:02.184 -07 000000561 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:09:02.184 -07 000000561 INF: FPGA: Recv CAMSNAP
17-03-18 04:09:02.184 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 457 ms to get response, and 463 ms overall
17-03-18 04:09:02.184 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2405564128, 0x0, 559484976) start.
17-03-18 04:09:02.304 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2405564128, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 04:09:02.304 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:09:02.304 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 04:09:02.304 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 232 ms.
17-03-18 04:09:02.384 -07 000000455 INF: Image SNR check: start
17-03-18 04:09:02.384 -07 000000480 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:09:02.384 -07 000000437 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:09:02.394 -07 000000480 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:09:02.394 -07 000000480 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:09:02.394 -07 000000455 INF: Image SNR check: pass  [peak (Max-Min)=129.12]
17-03-18 04:09:02.394 -07 000000455 INF: Autofocus start
17-03-18 04:09:02.394 -07 000000455 INF: MeasureProfile start
17-03-18 04:09:02.414 -07 000000455 INF: MeasureProfile done
17-03-18 04:09:02.414 -07 000000455 INF: X=0  Z correction [um]=-0.02394831
17-03-18 04:09:02.414 -07 000000455 INF: Autofocus finished
17-03-18 04:09:02.594 -07 000000618 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:09:02.594 -07 000000480 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:09:02.594 -07 000000610 INF: ------------ Scan Snapping tile 1 at Y-position 59.9111328125, Z-position -0.139300474677897. ----------
17-03-18 04:09:02.594 -07 000000610 INF: Cycle	121	Tile	1	Exposure Settings		A	415	G	200	T	200	C	415
17-03-18 04:09:02.604 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28937, sync = True, waitForSettling = True)
17-03-18 04:09:02.604 -07 000000610 INF: Z Motor: Moving to -0.132465 mm, started at -0.139300 mm, distance = 6.84 um
17-03-18 04:09:02.604 -07 000000610 INF: FPGA: Xmit ZDACW 28937\n [Z Motor]
17-03-18 04:09:02.604 -07 000000447 INF: FPGA: Recv ZDACW
17-03-18 04:09:02.614 -07 000000610 INF: FPGA: 'ZDACW 28937' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:02.614 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:09:02.614 -07 000000480 INF: FPGA: Recv ZDACR 28937
17-03-18 04:09:02.624 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:02.624 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:09:02.774 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:02.774 -07 000000512 INF: FPGA: Recv ZSGSRD 29914
17-03-18 04:09:02.784 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:09:02.784 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:02.784 -07 000000012 INF: FPGA: Recv ZSGSRD 29905
17-03-18 04:09:02.794 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:02.794 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:02.794 -07 000000561 INF: FPGA: Recv ZSGSRD 29907
17-03-18 04:09:02.804 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:02.804 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:02.804 -07 000000579 INF: FPGA: Recv ZSGSRD 29910
17-03-18 04:09:02.814 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:02.814 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:02.814 -07 000000618 INF: FPGA: Recv ZSGSRD 29917
17-03-18 04:09:02.824 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:02.824 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:02.824 -07 000000501 INF: FPGA: Recv ZSGSRD 29911
17-03-18 04:09:02.834 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:02.834 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:02.834 -07 000000012 INF: FPGA: Recv ZSGSRD 29910
17-03-18 04:09:02.844 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:02.844 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:02.844 -07 000000561 INF: FPGA: Recv ZSGSRD 29910
17-03-18 04:09:02.854 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:02.854 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:02.854 -07 000000487 INF: FPGA: Recv ZSGSRD 29912
17-03-18 04:09:02.864 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:02.864 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:02.864 -07 000000437 INF: FPGA: Recv ZSGSRD 29906
17-03-18 04:09:02.874 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:02.874 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:09:02.874 -07 000000012 INF: FPGA: Recv ZPIEZORD 25267
17-03-18 04:09:02.884 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:02.884 -07 000000610 INF: Z Motor: Piezo is near 34.0 V (nominally 0 to 100 V), expect near 44.2 V, since DAC is at 4.416 V. Piezo Error = -10.2 V.
17-03-18 04:09:02.884 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.5 um, Read 10 ADC samples: Avg = 29910 (-131.7 uncal um), Error = 0.8 uncal um, Median = 29910 (-131.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29905 (-131.7 uncal um), Max = 29917 (-131.7 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 04:09:02.884 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29910, posNoise = 7, negNoise = 5
17-03-18 04:09:02.884 -07 000000610 INF: Z Motor: After move to -0.132465, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:09:02.884 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-18 04:09:02.884 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:09:02.884 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:09:02.884 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:09:02.884 -07 000000447 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:09:02.884 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:09:02.884 -07 000000608 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:09:02.884 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:09:02.884 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 04:09:02.884 -07 000000447 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:09:02.884 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:09:02.884 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 04:09:02.884 -07 000000608 INF: Camera: sBCa_SetPowerMode(785074704, 1) start.
17-03-18 04:09:02.884 -07 000000447 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 04:09:02.884 -07 000000447 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:09:02.904 -07 000000447 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 12 ms.
17-03-18 04:09:02.904 -07 000000447 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 17 ms.
17-03-18 04:09:02.914 -07 000000608 INF: Camera: sBCa_SetPowerMode(785074704, 1) end. Duration was 22 ms.
17-03-18 04:09:02.914 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:09:02.914 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-18 04:09:02.914 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:09:02.924 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 11 ms.
17-03-18 04:09:02.924 -07 000000608 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 42 ms.
17-03-18 04:09:02.924 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 415 415 200 200 29114 150\n [Camera]
17-03-18 04:09:03.124 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:09:03.544 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 609
17-03-18 04:09:03.544 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 609
17-03-18 04:09:03.544 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:09:03.544 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 609
17-03-18 04:09:03.544 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 609
17-03-18 04:09:03.554 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:09:03.554 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:09:03.554 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-18 04:09:03.554 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:09:03.554 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 04:09:03.624 -07 000000487 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 121, FrontChillerTemperature: 4.000345,
17-03-18 04:09:03.734 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29114 800
17-03-18 04:09:03.884 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning grn on 950
17-03-18 04:09:03.934 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 378 ms.
17-03-18 04:09:03.934 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-18 04:09:03.934 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:09:03.934 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:09:03.944 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-18 04:09:03.944 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 388 ms.
17-03-18 04:09:03.944 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-18 04:09:03.944 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:09:03.944 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:09:03.944 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 04:09:04.084 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1150
17-03-18 04:09:04.084 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1150
17-03-18 04:09:04.084 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:09:04.094 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1150
17-03-18 04:09:04.094 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1150
17-03-18 04:09:04.094 -07 000000437 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:09:04.094 -07 000000437 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:09:04.094 -07 000000437 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 04:09:04.094 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:09:04.094 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 2334719600, 0x0, 391868352) start.
17-03-18 04:09:04.274 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP 1343
17-03-18 04:09:04.274 -07 000000447 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:09:04.274 -07 000000610 INF: FPGA: 'CAMDBLSNAP 415 415 200 200 29114 150' command took 2 ms to send, 1339 ms to get response, and 1350 ms overall
17-03-18 04:09:04.284 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 04:09:04.284 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 2 at Y-position 59.9111328125, Z-Position -0.132471537171205. ------
17-03-18 04:09:04.284 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:09:04.284 -07 000000487 INF: Y Motor: MoveYZ optimized starting. Moving Y to 60.7426 mm, moving Z to -0.13889 mm
17-03-18 04:09:04.284 -07 000000487 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:09:04.284 -07 000000012 INF: Y Motor: Entering MoveAbsStepped (target = 97188 steps, sync = True, waitForSettling = True)
17-03-18 04:09:04.284 -07 000000012 INF: Y Motor: Moving to 60.7426 mm, started at 59.9111 mm, delta = 0.8315 mm
17-03-18 04:09:04.284 -07 000000480 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:09:04.284 -07 000000455 INF: Z Motor: Entering MoveAbsStepped (DAC = 30341, sync = True, waitForSettling = False)
17-03-18 04:09:04.284 -07 000000455 INF: Z Motor: Moving to -0.138892 mm, started at -0.132472 mm, distance = -6.42 um
17-03-18 04:09:04.294 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 04:09:04.294 -07 000000455 INF: FPGA: Xmit ZDACW 30341\n [Z Motor]
17-03-18 04:09:04.294 -07 000000608 INF: FPGA: Recv ZDACW
17-03-18 04:09:04.304 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:09:04.304 -07 000000455 INF: FPGA: 'ZDACW 30341' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:09:04.304 -07 000000608 INF: FPGA: Recv YRDPOS 122698
17-03-18 04:09:04.314 -07 000000512 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:09:04.314 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-18 04:09:04.424 -07 000000012 INF: Y Motor: Encoder = 122698 = motor step 95857.8 = 59.9111 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:09:04.424 -07 000000012 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:09:04.424 -07 000000012 INF: Y Motor: Moving 1330 steps2
17-03-18 04:09:04.434 -07 000000455 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:09:04.434 -07 000000447 INF: FPGA: Recv ZDACR 30341
17-03-18 04:09:04.444 -07 000000012 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:09:04.444 -07 000000455 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 139 ms overall
17-03-18 04:09:04.444 -07 000000455 INF: Z Motor: MoveAbsStepped took 151 ms (did NOT wait for settling yet))
17-03-18 04:09:04.494 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 2334719600, 0x0, 391868352) end. Duration was 394 ms.
17-03-18 04:09:04.494 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 04:09:04.494 -07 000000444 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:09:04.494 -07 000000437 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 398 ms.
17-03-18 04:09:04.494 -07 000000437 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 04:09:04.494 -07 000000437 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:09:04.494 -07 000000444 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:09:04.494 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms.
17-03-18 04:09:04.504 -07 000000437 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:09:04.504 -07 000000437 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-18 04:09:04.514 -07 000000455 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:09:04.514 -07 000000512 INF: FPGA: 'FOCMRRFOC' command took 118 ms to send, 82 ms to get response, and 222 ms overall
17-03-18 04:09:04.814 -07 000000561 INF: FPGA: Recv YMVTILE
17-03-18 04:09:04.814 -07 000000012 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 369 ms to get response, and 391 ms overall
17-03-18 04:09:04.854 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:09:04.864 -07 000000625 INF: FPGA: Recv YRDPOS 124381
17-03-18 04:09:04.864 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 04:09:04.864 -07 000000012 INF: Y Motor: Encoder = 124381 = motor step 97172.7 = 60.7329 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:09:04.864 -07 000000012 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-18 04:09:04.864 -07 000000012 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 391 ms, distance = 0.831 mm, average velocity = 2.127 mm/sec
17-03-18 04:09:05.814 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:09:05.814 -07 000000579 INF: FPGA: Recv YRDPOS 124381
17-03-18 04:09:05.824 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:09:05.824 -07 000000012 INF: Y Motor: Encoder = 124381 = motor step 97172.7 = 60.7329 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:09:05.854 -07 000000012 INF: Y Motor: After move to 60.742607, error = -0.009697, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:09:05.854 -07 000000012 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:09:05.854 -07 000000012 INF: Y Motor: Moved to 60.7329 after 1563 ms (table move)
17-03-18 04:09:05.854 -07 000000487 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138892 mm (DAC = 30341)
17-03-18 04:09:05.854 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:05.854 -07 000000608 INF: FPGA: Recv ZSGSRD 30911
17-03-18 04:09:05.864 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 04:09:05.864 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:05.864 -07 000000474 INF: FPGA: Recv ZSGSRD 30912
17-03-18 04:09:05.874 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:05.874 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:05.874 -07 000000437 INF: FPGA: Recv ZSGSRD 30909
17-03-18 04:09:05.884 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:05.884 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:05.884 -07 000000012 INF: FPGA: Recv ZSGSRD 30907
17-03-18 04:09:05.894 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:05.894 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:05.894 -07 000000608 INF: FPGA: Recv ZSGSRD 30901
17-03-18 04:09:05.904 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:05.904 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:05.904 -07 000000437 INF: FPGA: Recv ZSGSRD 30908
17-03-18 04:09:05.914 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:05.914 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:05.914 -07 000000501 INF: FPGA: Recv ZSGSRD 30915
17-03-18 04:09:05.924 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:09:05.924 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:05.924 -07 000000618 INF: FPGA: Recv ZSGSRD 30908
17-03-18 04:09:05.934 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:05.934 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:05.934 -07 000000590 INF: FPGA: Recv ZSGSRD 30912
17-03-18 04:09:05.944 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:05.944 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:05.944 -07 000000455 INF: FPGA: Recv ZSGSRD 30903
17-03-18 04:09:05.954 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:05.954 -07 000000487 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:09:05.954 -07 000000012 INF: FPGA: Recv ZPIEZORD 26638
17-03-18 04:09:05.964 -07 000000487 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:05.964 -07 000000487 INF: Z Motor: Piezo is near 36.9 V (nominally 0 to 100 V), expect near 46.3 V, since DAC is at 4.630 V. Piezo Error = -9.4 V.
17-03-18 04:09:05.964 -07 000000487 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.9 um, Read 10 ADC samples: Avg = 30909 (-138.1 uncal um), Error = 0.8 uncal um, Median = 30908 (-138.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 30901 (-138.0 uncal um), Max = 30915 (-138.1 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 04:09:05.964 -07 000000487 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30909, posNoise = 6, negNoise = 8
17-03-18 04:09:05.964 -07 000000487 INF: Z Motor: After move to -0.138892, error = 0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:09:05.964 -07 000000487 INF: Z Motor: Settle wait time = 1566 ms, measure time = 105 ms (allowed 150 ms), total time = 1671 ms
17-03-18 04:09:05.964 -07 000000487 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 04:09:06.014 -07 000000487 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1724 ms
17-03-18 04:09:06.014 -07 000000487 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:09:06.014 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:09:06.014 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:09:06.014 -07 000000480 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:09:06.014 -07 000000447 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:09:06.014 -07 000000474 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:09:06.014 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:09:06.014 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:09:06.014 -07 000000474 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:09:06.024 -07 000000474 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 04:09:06.024 -07 000000474 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:09:06.034 -07 000000474 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-18 04:09:06.034 -07 000000474 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-18 04:09:06.034 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:09:06.084 -07 000000487 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:09:06.384 -07 000000590 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:09:06.384 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:09:06.384 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:09:06.384 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 608668944, 0x0, 559484976) start.
17-03-18 04:09:06.424 -07 000000474 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:09:06.424 -07 000000561 INF: FPGA: Recv CAMSNAP
17-03-18 04:09:06.424 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 381 ms to get response, and 384 ms overall
17-03-18 04:09:06.504 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 608668944, 0x0, 559484976) end. Duration was 126 ms.
17-03-18 04:09:06.514 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:09:06.514 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 04:09:06.514 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms.
17-03-18 04:09:06.524 -07 000000444 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:09:06.524 -07 000000501 INF: Autofocus start
17-03-18 04:09:06.524 -07 000000501 INF: MeasureProfile start
17-03-18 04:09:06.524 -07 000000455 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:09:06.534 -07 000000444 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:09:06.534 -07 000000444 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:09:06.534 -07 000000501 INF: MeasureProfile done
17-03-18 04:09:06.534 -07 000000501 INF: X=0  Z correction [um]=-0.02394831
17-03-18 04:09:06.534 -07 000000501 INF: Autofocus finished
17-03-18 04:09:06.644 -07 000000474 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:09:06.644 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 120. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1718, R2=1787, Total=3505. Warn if over 250 bubbles per interval.
17-03-18 04:09:06.734 -07 000000579 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:09:06.734 -07 000000444 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:09:06.734 -07 000000610 INF: ------------ Scan Snapping tile 2 at Y-position 60.73291015625, Z-position -0.138889325100824. ----------
17-03-18 04:09:06.734 -07 000000610 INF: Cycle	121	Tile	2	Exposure Settings		A	415	G	200	T	200	C	415
17-03-18 04:09:06.744 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28848, sync = True, waitForSettling = True)
17-03-18 04:09:06.744 -07 000000610 INF: Z Motor: Moving to -0.132058 mm, started at -0.138889 mm, distance = 6.83 um
17-03-18 04:09:06.744 -07 000000610 INF: FPGA: Xmit ZDACW 28848\n [Z Motor]
17-03-18 04:09:06.744 -07 000000611 INF: FPGA: Recv ZDACW
17-03-18 04:09:06.754 -07 000000610 INF: FPGA: 'ZDACW 28848' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 04:09:06.754 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:09:06.754 -07 000000487 INF: FPGA: Recv ZDACR 28848
17-03-18 04:09:06.764 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:06.764 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:09:06.914 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:06.914 -07 000000501 INF: FPGA: Recv ZSGSRD 29848
17-03-18 04:09:06.924 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:09:06.924 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:06.924 -07 000000590 INF: FPGA: Recv ZSGSRD 29849
17-03-18 04:09:06.934 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:06.934 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:06.934 -07 000000611 INF: FPGA: Recv ZSGSRD 29844
17-03-18 04:09:06.944 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:06.944 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:06.944 -07 000000455 INF: FPGA: Recv ZSGSRD 29845
17-03-18 04:09:06.954 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:06.954 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:06.954 -07 000000579 INF: FPGA: Recv ZSGSRD 29851
17-03-18 04:09:06.964 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:06.964 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:06.964 -07 000000012 INF: FPGA: Recv ZSGSRD 29849
17-03-18 04:09:06.974 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:06.974 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:06.974 -07 000000561 INF: FPGA: Recv ZSGSRD 29849
17-03-18 04:09:06.984 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:06.984 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:06.984 -07 000000618 INF: FPGA: Recv ZSGSRD 29845
17-03-18 04:09:06.994 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:06.994 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:06.994 -07 000000480 INF: FPGA: Recv ZSGSRD 29842
17-03-18 04:09:07.004 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:07.004 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:07.004 -07 000000625 INF: FPGA: Recv ZSGSRD 29850
17-03-18 04:09:07.014 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:07.014 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:09:07.014 -07 000000444 INF: FPGA: Recv ZPIEZORD 25266
17-03-18 04:09:07.024 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:07.024 -07 000000610 INF: Z Motor: Piezo is near 34.0 V (nominally 0 to 100 V), expect near 44.0 V, since DAC is at 4.402 V. Piezo Error = -10.0 V.
17-03-18 04:09:07.024 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.1 um, Read 10 ADC samples: Avg = 29847 (-131.3 uncal um), Error = 0.8 uncal um, Median = 29848 (-131.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29842 (-131.3 uncal um), Max = 29851 (-131.3 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 04:09:07.024 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29847, posNoise = 4, negNoise = 5
17-03-18 04:09:07.024 -07 000000610 INF: Z Motor: After move to -0.132058, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:09:07.024 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-18 04:09:07.024 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:09:07.024 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:09:07.024 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:09:07.024 -07 000000447 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:09:07.024 -07 000000579 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:09:07.024 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:09:07.024 -07 000000590 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:09:07.024 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:09:07.024 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:09:07.024 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:09:07.024 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:09:07.024 -07 000000590 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:09:07.034 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 04:09:07.034 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:09:07.034 -07 000000590 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-18 04:09:07.034 -07 000000590 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:09:07.044 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 04:09:07.044 -07 000000579 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 04:09:07.044 -07 000000590 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 04:09:07.044 -07 000000590 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 04:09:07.054 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 415 415 200 200 29025 150\n [Camera]
17-03-18 04:09:07.244 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:09:07.664 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 607
17-03-18 04:09:07.664 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 607
17-03-18 04:09:07.664 -07 000000487 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:09:07.664 -07 000000487 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:09:07.664 -07 000000487 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-18 04:09:07.674 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 607
17-03-18 04:09:07.674 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 607
17-03-18 04:09:07.674 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:09:07.674 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:09:07.674 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 04:09:07.854 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29025 800
17-03-18 04:09:08.004 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning grn on 950
17-03-18 04:09:08.064 -07 000000487 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 395 ms.
17-03-18 04:09:08.064 -07 000000487 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 04:09:08.064 -07 000000487 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:09:08.064 -07 000000487 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:09:08.064 -07 000000487 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 04:09:08.064 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 398 ms.
17-03-18 04:09:08.074 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 04:09:08.074 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:09:08.074 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:09:08.084 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-18 04:09:08.204 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1150
17-03-18 04:09:08.204 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1150
17-03-18 04:09:08.204 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:09:08.204 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:09:08.204 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) start.
17-03-18 04:09:08.214 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1150
17-03-18 04:09:08.214 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1150
17-03-18 04:09:08.214 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:09:08.214 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:09:08.214 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) start.
17-03-18 04:09:08.394 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP 1343
17-03-18 04:09:08.404 -07 000000455 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:09:08.404 -07 000000610 INF: FPGA: 'CAMDBLSNAP 415 415 200 200 29025 150' command took 2 ms to send, 1340 ms to get response, and 1350 ms overall
17-03-18 04:09:08.404 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 04:09:08.404 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 3 at Y-position 60.73291015625, Z-Position -0.132066811806274. ------
17-03-18 04:09:08.404 -07 000000608 INF: Y Motor: MoveYZ optimized starting. Moving Y to 61.5726 mm, moving Z to -0.13881 mm
17-03-18 04:09:08.404 -07 000000608 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:09:08.404 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:09:08.414 -07 000000012 INF: Y Motor: Entering MoveAbsStepped (target = 98516 steps, sync = True, waitForSettling = True)
17-03-18 04:09:08.414 -07 000000012 INF: Y Motor: Moving to 61.5726 mm, started at 60.7329 mm, delta = 0.8397 mm
17-03-18 04:09:08.414 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:09:08.414 -07 000000474 INF: Z Motor: Entering MoveAbsStepped (DAC = 30322, sync = True, waitForSettling = False)
17-03-18 04:09:08.414 -07 000000474 INF: Z Motor: Moving to -0.138805 mm, started at -0.132067 mm, distance = -6.74 um
17-03-18 04:09:08.414 -07 000000447 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:09:08.414 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 04:09:08.414 -07 000000590 INF: FPGA: Recv YRDPOS 124382
17-03-18 04:09:08.424 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 04:09:08.424 -07 000000512 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:09:08.424 -07 000000012 INF: Y Motor: Encoder = 124382 = motor step 97173.4 = 60.7334 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:09:08.424 -07 000000012 INF: Y Motor: Last commanded position = 60.7426 mm (97188.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:09:08.424 -07 000000012 INF: Y Motor: Moving 1343 steps-20
17-03-18 04:09:08.434 -07 000000474 INF: FPGA: Xmit ZDACW 30322\n [Z Motor]
17-03-18 04:09:08.434 -07 000000590 INF: FPGA: Recv ZDACW
17-03-18 04:09:08.444 -07 000000012 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:09:08.444 -07 000000474 INF: FPGA: 'ZDACW 30322' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-18 04:09:08.454 -07 000000474 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:09:08.454 -07 000000437 INF: FPGA: Recv ZDACR 30322
17-03-18 04:09:08.464 -07 000000474 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 04:09:08.464 -07 000000474 INF: Z Motor: MoveAbsStepped took 48 ms (did NOT wait for settling yet))
17-03-18 04:09:08.604 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) end. Duration was 392 ms.
17-03-18 04:09:08.604 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-18 04:09:08.604 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:09:08.604 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) end. Duration was 397 ms.
17-03-18 04:09:08.604 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 04:09:08.604 -07 000000444 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:09:08.604 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:09:08.614 -07 000000444 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 04:09:08.614 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 04:09:08.614 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-18 04:09:08.624 -07 000000579 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:09:08.624 -07 000000512 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 210 ms overall
17-03-18 04:09:08.824 -07 000000444 INF: FPGA: Recv YMVTILE
17-03-18 04:09:08.824 -07 000000012 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 370 ms to get response, and 393 ms overall
17-03-18 04:09:08.864 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:09:08.874 -07 000000625 INF: FPGA: Recv YRDPOS 126083
17-03-18 04:09:08.874 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 04:09:08.874 -07 000000012 INF: Y Motor: Encoder = 126083 = motor step 98502.3 = 61.5640 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:09:08.874 -07 000000012 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-18 04:09:08.874 -07 000000012 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.840 mm, average velocity = 2.131 mm/sec
17-03-18 04:09:08.984 -07 000000611 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 121, FrontChillerTemperature: 3.999021,
17-03-18 04:09:09.824 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:09:09.824 -07 000000444 INF: FPGA: Recv YRDPOS 126083
17-03-18 04:09:09.834 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:09.834 -07 000000012 INF: Y Motor: Encoder = 126083 = motor step 98502.3 = 61.5640 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:09:09.864 -07 000000012 INF: Y Motor: After move to 61.572609, error = -0.008644, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:09:09.864 -07 000000012 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:09:09.864 -07 000000012 INF: Y Motor: Moved to 61.5640 after 1449 ms (table move)
17-03-18 04:09:09.864 -07 000000608 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138805 mm (DAC = 30322)
17-03-18 04:09:09.864 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:09.864 -07 000000579 INF: FPGA: Recv ZSGSRD 30902
17-03-18 04:09:09.874 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 04:09:09.874 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:09.874 -07 000000501 INF: FPGA: Recv ZSGSRD 30903
17-03-18 04:09:09.884 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:09.884 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:09.884 -07 000000618 INF: FPGA: Recv ZSGSRD 30885
17-03-18 04:09:09.894 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:09.894 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:09.894 -07 000000561 INF: FPGA: Recv ZSGSRD 30892
17-03-18 04:09:09.904 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:09.904 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:09.904 -07 000000561 INF: FPGA: Recv ZSGSRD 30898
17-03-18 04:09:09.914 -07 000000608 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:09.914 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:09.914 -07 000000487 INF: FPGA: Recv ZSGSRD 30898
17-03-18 04:09:09.924 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:09.924 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:09.924 -07 000000590 INF: FPGA: Recv ZSGSRD 30906
17-03-18 04:09:09.934 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:09.934 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:09.934 -07 000000455 INF: FPGA: Recv ZSGSRD 30899
17-03-18 04:09:09.944 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:09.944 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:09.944 -07 000000611 INF: FPGA: Recv ZSGSRD 30888
17-03-18 04:09:09.954 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:09.954 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:09.954 -07 000000625 INF: FPGA: Recv ZSGSRD 30897
17-03-18 04:09:09.964 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:09.964 -07 000000608 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:09:09.964 -07 000000512 INF: FPGA: Recv ZPIEZORD 26662
17-03-18 04:09:09.974 -07 000000608 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:09.974 -07 000000608 INF: Z Motor: Piezo is near 37.0 V (nominally 0 to 100 V), expect near 46.3 V, since DAC is at 4.627 V. Piezo Error = -9.3 V.
17-03-18 04:09:09.974 -07 000000608 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.8 um, Read 10 ADC samples: Avg = 30897 (-138.0 uncal um), Error = 0.8 uncal um, Median = 30898 (-138.0 uncal um), StdDev = 7 (0.0 uncal um), Range = 21 (0.1 uncal um), Min = 30885 (-137.9 uncal um), Max = 30906 (-138.1 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 12 (0.1 uncal um)
17-03-18 04:09:09.974 -07 000000608 INF: Z Motor: ADC noise = 12, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30897, posNoise = 9, negNoise = 12
17-03-18 04:09:09.974 -07 000000608 INF: Z Motor: After move to -0.138805, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:09:09.974 -07 000000608 INF: Z Motor: Settle wait time = 1452 ms, measure time = 107 ms (allowed 150 ms), total time = 1559 ms
17-03-18 04:09:09.974 -07 000000608 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-18 04:09:10.024 -07 000000608 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1612 ms
17-03-18 04:09:10.024 -07 000000608 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:09:10.024 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:09:10.024 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:09:10.024 -07 000000474 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:09:10.024 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:09:10.024 -07 000000487 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:09:10.024 -07 000000012 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:09:10.024 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:09:10.024 -07 000000474 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:09:10.034 -07 000000474 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 04:09:10.034 -07 000000474 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:09:10.044 -07 000000474 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 04:09:10.044 -07 000000474 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 13 ms.
17-03-18 04:09:10.044 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:09:10.084 -07 000000474 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:09:10.384 -07 000000444 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:09:10.384 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:09:10.384 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:09:10.394 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2387016928, 0x0, 559484976) start.
17-03-18 04:09:10.424 -07 000000611 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:09:10.424 -07 000000437 INF: FPGA: Recv CAMSNAP
17-03-18 04:09:10.424 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 379 ms to get response, and 385 ms overall
17-03-18 04:09:10.504 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2387016928, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 04:09:10.504 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:09:10.504 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 04:09:10.504 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 04:09:10.524 -07 000000590 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:09:10.524 -07 000000474 INF: Autofocus start
17-03-18 04:09:10.524 -07 000000474 INF: MeasureProfile start
17-03-18 04:09:10.524 -07 000000487 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:09:10.534 -07 000000590 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 04:09:10.534 -07 000000590 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:09:10.534 -07 000000474 INF: MeasureProfile done
17-03-18 04:09:10.534 -07 000000474 INF: X=32  Z correction [um]=0.1299841
17-03-18 04:09:10.534 -07 000000474 INF: Autofocus finished
17-03-18 04:09:10.734 -07 000000487 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:09:10.734 -07 000000590 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:09:10.744 -07 000000610 INF: ------------ Scan Snapping tile 3 at Y-position 61.56396484375, Z-position -0.138812234555123. ----------
17-03-18 04:09:10.744 -07 000000610 INF: Cycle	121	Tile	3	Exposure Settings		A	415	G	200	T	200	C	415
17-03-18 04:09:10.744 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28863, sync = True, waitForSettling = True)
17-03-18 04:09:10.744 -07 000000610 INF: Z Motor: Moving to -0.132126 mm, started at -0.138812 mm, distance = 6.69 um
17-03-18 04:09:10.744 -07 000000610 INF: FPGA: Xmit ZDACW 28863\n [Z Motor]
17-03-18 04:09:10.744 -07 000000579 INF: FPGA: Recv ZDACW
17-03-18 04:09:10.754 -07 000000610 INF: FPGA: 'ZDACW 28863' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:09:10.754 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:09:10.754 -07 000000561 INF: FPGA: Recv ZDACR 28863
17-03-18 04:09:10.764 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:10.764 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:09:10.914 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:10.914 -07 000000501 INF: FPGA: Recv ZSGSRD 29857
17-03-18 04:09:10.924 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:09:10.924 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:10.924 -07 000000590 INF: FPGA: Recv ZSGSRD 29862
17-03-18 04:09:10.934 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:10.934 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:10.934 -07 000000480 INF: FPGA: Recv ZSGSRD 29860
17-03-18 04:09:10.944 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:10.944 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:10.944 -07 000000608 INF: FPGA: Recv ZSGSRD 29850
17-03-18 04:09:10.954 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:10.954 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:10.954 -07 000000625 INF: FPGA: Recv ZSGSRD 29852
17-03-18 04:09:10.964 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:10.964 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:10.964 -07 000000455 INF: FPGA: Recv ZSGSRD 29858
17-03-18 04:09:10.974 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:10.974 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:10.974 -07 000000618 INF: FPGA: Recv ZSGSRD 29863
17-03-18 04:09:10.984 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:10.984 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:10.984 -07 000000501 INF: FPGA: Recv ZSGSRD 29850
17-03-18 04:09:10.994 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:10.994 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:10.994 -07 000000561 INF: FPGA: Recv ZSGSRD 29855
17-03-18 04:09:11.004 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:11.004 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:11.004 -07 000000437 INF: FPGA: Recv ZSGSRD 29864
17-03-18 04:09:11.014 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:11.014 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:09:11.014 -07 000000608 INF: FPGA: Recv ZPIEZORD 25320
17-03-18 04:09:11.024 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:11.024 -07 000000610 INF: Z Motor: Piezo is near 34.1 V (nominally 0 to 100 V), expect near 44.0 V, since DAC is at 4.404 V. Piezo Error = -10.0 V.
17-03-18 04:09:11.024 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.1 um, Read 10 ADC samples: Avg = 29857 (-131.3 uncal um), Error = 0.8 uncal um, Median = 29858 (-131.4 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 29850 (-131.3 uncal um), Max = 29864 (-131.4 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 04:09:11.024 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29857, posNoise = 7, negNoise = 7
17-03-18 04:09:11.024 -07 000000610 INF: Z Motor: After move to -0.132126, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:09:11.024 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 04:09:11.024 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:09:11.024 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:09:11.024 -07 000000487 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:09:11.024 -07 000000474 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:09:11.024 -07 000000455 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:09:11.024 -07 000000447 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:09:11.024 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:09:11.024 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:09:11.024 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:09:11.024 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:09:11.024 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:09:11.024 -07 000000447 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:09:11.034 -07 000000447 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 04:09:11.034 -07 000000447 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:09:11.034 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 04:09:11.034 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:09:11.044 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 04:09:11.044 -07 000000455 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 04:09:11.044 -07 000000447 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 04:09:11.044 -07 000000447 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 04:09:11.044 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 415 415 200 200 29040 150\n [Camera]
17-03-18 04:09:11.244 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:09:11.644 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:09:11.644 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 120. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1718, R2=1787, Total=3505. Warn if over 250 bubbles per interval.
17-03-18 04:09:11.654 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 607
17-03-18 04:09:11.654 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 607
17-03-18 04:09:11.654 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:09:11.654 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:09:11.654 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 04:09:11.664 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 607
17-03-18 04:09:11.664 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 607
17-03-18 04:09:11.664 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:09:11.664 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:09:11.664 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-18 04:09:11.854 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29040 800
17-03-18 04:09:12.004 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP turning grn on 950
17-03-18 04:09:12.044 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 380 ms.
17-03-18 04:09:12.044 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-18 04:09:12.044 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:09:12.044 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 384 ms.
17-03-18 04:09:12.044 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-18 04:09:12.044 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:09:12.044 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:09:12.044 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:09:12.044 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-18 04:09:12.054 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-18 04:09:12.204 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1150
17-03-18 04:09:12.204 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1150
17-03-18 04:09:12.204 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:09:12.204 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:09:12.204 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-18 04:09:12.204 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1150
17-03-18 04:09:12.204 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1150
17-03-18 04:09:12.204 -07 000000444 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:09:12.204 -07 000000444 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:09:12.204 -07 000000444 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 04:09:12.394 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP 1342
17-03-18 04:09:12.394 -07 000000579 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:09:12.394 -07 000000610 INF: FPGA: 'CAMDBLSNAP 415 415 200 200 29040 150' command took 2 ms to send, 1343 ms to get response, and 1349 ms overall
17-03-18 04:09:12.394 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 04:09:12.394 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 4 at Y-position 61.56396484375, Z-Position -0.132131053927692. ------
17-03-18 04:09:12.394 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:09:12.394 -07 000000455 INF: Y Motor: MoveYZ optimized starting. Moving Y to 62.4026 mm, moving Z to -0.13850 mm
17-03-18 04:09:12.394 -07 000000455 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:09:12.404 -07 000000437 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:09:12.404 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 04:09:12.404 -07 000000512 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:09:12.404 -07 000000447 INF: Y Motor: Entering MoveAbsStepped (target = 99844 steps, sync = True, waitForSettling = True)
17-03-18 04:09:12.404 -07 000000447 INF: Y Motor: Moving to 62.4026 mm, started at 61.5640 mm, delta = 0.8386 mm
17-03-18 04:09:12.404 -07 000000608 INF: Z Motor: Entering MoveAbsStepped (DAC = 30256, sync = True, waitForSettling = False)
17-03-18 04:09:12.404 -07 000000608 INF: Z Motor: Moving to -0.138503 mm, started at -0.132131 mm, distance = -6.37 um
17-03-18 04:09:12.414 -07 000000447 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:09:12.414 -07 000000474 INF: FPGA: Recv YRDPOS 126083
17-03-18 04:09:12.424 -07 000000608 INF: FPGA: Xmit ZDACW 30256\n [Z Motor]
17-03-18 04:09:12.424 -07 000000447 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-18 04:09:12.424 -07 000000447 INF: Y Motor: Encoder = 126083 = motor step 98502.3 = 61.5640 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:09:12.424 -07 000000447 INF: Y Motor: Last commanded position = 61.5726 mm (98516.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:09:12.424 -07 000000447 INF: Y Motor: Moving 1342 steps-18
17-03-18 04:09:12.424 -07 000000437 INF: FPGA: Recv ZDACW
17-03-18 04:09:12.434 -07 000000608 INF: FPGA: 'ZDACW 30256' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-18 04:09:12.434 -07 000000447 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:09:12.444 -07 000000608 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:09:12.444 -07 000000474 INF: FPGA: Recv ZDACR 30256
17-03-18 04:09:12.454 -07 000000608 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 04:09:12.454 -07 000000608 INF: Z Motor: MoveAbsStepped took 44 ms (did NOT wait for settling yet))
17-03-18 04:09:12.604 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 402 ms.
17-03-18 04:09:12.604 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 04:09:12.604 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:09:12.604 -07 000000437 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:09:12.604 -07 000000512 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 196 ms to get response, and 202 ms overall
17-03-18 04:09:12.604 -07 000000444 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 402 ms.
17-03-18 04:09:12.604 -07 000000444 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-18 04:09:12.604 -07 000000444 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:09:12.614 -07 000000444 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:09:12.614 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-18 04:09:12.614 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-18 04:09:12.614 -07 000000444 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-18 04:09:12.804 -07 000000608 INF: FPGA: Recv YMVTILE
17-03-18 04:09:12.804 -07 000000447 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-18 04:09:12.854 -07 000000447 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:09:12.864 -07 000000608 INF: FPGA: Recv YRDPOS 127786
17-03-18 04:09:12.864 -07 000000447 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 04:09:12.864 -07 000000447 INF: Y Motor: Encoder = 127786 = motor step 99832.8 = 62.3955 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:09:12.864 -07 000000447 INF: Y Motor: Position error before settling (table move) = -15 encoder counts (-0.007 mm)
17-03-18 04:09:12.864 -07 000000447 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 387 ms, distance = 0.839 mm, average velocity = 2.167 mm/sec
17-03-18 04:09:13.814 -07 000000447 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:09:13.814 -07 000000480 INF: FPGA: Recv YRDPOS 127786
17-03-18 04:09:13.824 -07 000000447 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:13.824 -07 000000447 INF: Y Motor: Encoder = 127786 = motor step 99832.8 = 62.3955 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:09:13.844 -07 000000447 INF: Y Motor: After move to 62.402607, error = -0.007099, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:09:13.844 -07 000000447 INF: Y Motor: Position error after settling (table move) = -15 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:09:13.844 -07 000000447 INF: Y Motor: Moved to 62.3955 after 1444 ms (table move)
17-03-18 04:09:13.854 -07 000000455 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138503 mm (DAC = 30256)
17-03-18 04:09:13.854 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:13.854 -07 000000437 INF: FPGA: Recv ZSGSRD 30854
17-03-18 04:09:13.864 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:09:13.864 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:13.864 -07 000000512 INF: FPGA: Recv ZSGSRD 30843
17-03-18 04:09:13.874 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 04:09:13.874 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:13.874 -07 000000487 INF: FPGA: Recv ZSGSRD 30850
17-03-18 04:09:13.884 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:13.884 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:13.884 -07 000000474 INF: FPGA: Recv ZSGSRD 30857
17-03-18 04:09:13.894 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:13.894 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:13.894 -07 000000608 INF: FPGA: Recv ZSGSRD 30846
17-03-18 04:09:13.904 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:13.904 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:13.904 -07 000000437 INF: FPGA: Recv ZSGSRD 30844
17-03-18 04:09:13.914 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:13.914 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:13.914 -07 000000561 INF: FPGA: Recv ZSGSRD 30846
17-03-18 04:09:13.924 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:13.924 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:13.924 -07 000000579 INF: FPGA: Recv ZSGSRD 30851
17-03-18 04:09:13.934 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:13.934 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:13.934 -07 000000447 INF: FPGA: Recv ZSGSRD 30853
17-03-18 04:09:13.944 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:13.944 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:13.944 -07 000000480 INF: FPGA: Recv ZSGSRD 30847
17-03-18 04:09:13.954 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:13.954 -07 000000455 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:09:13.954 -07 000000487 INF: FPGA: Recv ZPIEZORD 26609
17-03-18 04:09:13.964 -07 000000455 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:13.964 -07 000000455 INF: Z Motor: Piezo is near 36.8 V (nominally 0 to 100 V), expect near 46.2 V, since DAC is at 4.617 V. Piezo Error = -9.3 V.
17-03-18 04:09:13.964 -07 000000455 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.5 um, Read 10 ADC samples: Avg = 30849 (-137.7 uncal um), Error = 0.8 uncal um, Median = 30848 (-137.7 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 30843 (-137.7 uncal um), Max = 30857 (-137.8 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 04:09:13.964 -07 000000455 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30849, posNoise = 8, negNoise = 6
17-03-18 04:09:13.964 -07 000000455 INF: Z Motor: After move to -0.138503, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:09:13.964 -07 000000455 INF: Z Motor: Settle wait time = 1446 ms, measure time = 108 ms (allowed 150 ms), total time = 1554 ms
17-03-18 04:09:13.964 -07 000000455 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-18 04:09:14.014 -07 000000455 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1611 ms
17-03-18 04:09:14.014 -07 000000455 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:09:14.014 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:09:14.014 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:09:14.014 -07 000000590 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:09:14.014 -07 000000625 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:09:14.014 -07 000000608 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:09:14.014 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:09:14.014 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 04:09:14.014 -07 000000608 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:09:14.024 -07 000000608 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 04:09:14.024 -07 000000608 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:09:14.024 -07 000000608 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 04:09:14.024 -07 000000608 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-18 04:09:14.034 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:09:14.074 -07 000000611 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:09:14.344 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 121, FrontChillerTemperature: 3.994908,
17-03-18 04:09:14.374 -07 000000512 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:09:14.374 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:09:14.374 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:09:14.374 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1201016592, 0x0, 559484976) start.
17-03-18 04:09:14.414 -07 000000474 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:09:14.414 -07 000000444 INF: FPGA: Recv CAMSNAP
17-03-18 04:09:14.414 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 375 ms to get response, and 384 ms overall
17-03-18 04:09:14.494 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1201016592, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 04:09:14.494 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:09:14.494 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 04:09:14.494 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 04:09:14.514 -07 000000561 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:09:14.514 -07 000000012 INF: Autofocus start
17-03-18 04:09:14.514 -07 000000012 INF: MeasureProfile start
17-03-18 04:09:14.514 -07 000000447 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:09:14.524 -07 000000561 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 04:09:14.524 -07 000000561 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:09:14.524 -07 000000012 INF: MeasureProfile done
17-03-18 04:09:14.524 -07 000000012 INF: X=-16  Z correction [um]=-0.08128808
17-03-18 04:09:14.524 -07 000000012 INF: Autofocus finished
17-03-18 04:09:14.724 -07 000000501 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:09:14.724 -07 000000561 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:09:14.724 -07 000000610 INF: ------------ Scan Snapping tile 4 at Y-position 62.3955078125, Z-position -0.138503872372319. ----------
17-03-18 04:09:14.734 -07 000000610 INF: Cycle	121	Tile	4	Exposure Settings		A	415	G	200	T	200	C	415
17-03-18 04:09:14.734 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28750, sync = True, waitForSettling = True)
17-03-18 04:09:14.734 -07 000000610 INF: Z Motor: Moving to -0.131609 mm, started at -0.138504 mm, distance = 6.89 um
17-03-18 04:09:14.734 -07 000000610 INF: FPGA: Xmit ZDACW 28750\n [Z Motor]
17-03-18 04:09:14.734 -07 000000625 INF: FPGA: Recv ZDACW
17-03-18 04:09:14.744 -07 000000610 INF: FPGA: 'ZDACW 28750' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 04:09:14.744 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:09:14.744 -07 000000447 INF: FPGA: Recv ZDACR 28750
17-03-18 04:09:14.754 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:14.754 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:09:14.904 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:14.904 -07 000000480 INF: FPGA: Recv ZSGSRD 29778
17-03-18 04:09:14.914 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:14.924 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:14.924 -07 000000590 INF: FPGA: Recv ZSGSRD 29777
17-03-18 04:09:14.934 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 04:09:14.954 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:14.954 -07 000000579 INF: FPGA: Recv ZSGSRD 29774
17-03-18 04:09:14.964 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 04:09:14.964 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:14.964 -07 000000455 INF: FPGA: Recv ZSGSRD 29776
17-03-18 04:09:14.974 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:14.984 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:14.984 -07 000000625 INF: FPGA: Recv ZSGSRD 29780
17-03-18 04:09:14.994 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 04:09:14.994 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:14.994 -07 000000579 INF: FPGA: Recv ZSGSRD 29775
17-03-18 04:09:15.004 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:15.004 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:15.004 -07 000000480 INF: FPGA: Recv ZSGSRD 29774
17-03-18 04:09:15.014 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:15.014 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:15.014 -07 000000512 INF: FPGA: Recv ZSGSRD 29776
17-03-18 04:09:15.024 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:15.024 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:15.024 -07 000000444 INF: FPGA: Recv ZSGSRD 29776
17-03-18 04:09:15.034 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 04:09:15.034 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:15.034 -07 000000618 INF: FPGA: Recv ZSGSRD 29776
17-03-18 04:09:15.044 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:15.044 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:09:15.044 -07 000000474 INF: FPGA: Recv ZPIEZORD 25215
17-03-18 04:09:15.054 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:15.054 -07 000000610 INF: Z Motor: Piezo is near 33.9 V (nominally 0 to 100 V), expect near 43.9 V, since DAC is at 4.387 V. Piezo Error = -10.0 V.
17-03-18 04:09:15.054 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.6 um, Read 10 ADC samples: Avg = 29776 (-130.8 uncal um), Error = 0.8 uncal um, Median = 29776 (-130.8 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 29774 (-130.8 uncal um), Max = 29780 (-130.9 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 2 (0.0 uncal um)
17-03-18 04:09:15.054 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29776, posNoise = 4, negNoise = 2
17-03-18 04:09:15.054 -07 000000610 INF: Z Motor: After move to -0.131609, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:09:15.054 -07 000000610 INF: Z Motor: MoveAbsStepped took 318 ms)
17-03-18 04:09:15.054 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:09:15.054 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:09:15.054 -07 000000455 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:09:15.054 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:09:15.054 -07 000000447 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:09:15.054 -07 000000611 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:09:15.054 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:09:15.054 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 04:09:15.054 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:09:15.054 -07 000000444 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:09:15.054 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 04:09:15.054 -07 000000611 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:09:15.064 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 04:09:15.064 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:09:15.064 -07 000000611 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 04:09:15.064 -07 000000611 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:09:15.074 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 04:09:15.074 -07 000000455 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 04:09:15.074 -07 000000611 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-18 04:09:15.074 -07 000000611 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 04:09:15.074 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 415 415 200 200 28927 150\n [Camera]
17-03-18 04:09:15.274 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP turning red on 193
17-03-18 04:09:15.684 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 607
17-03-18 04:09:15.684 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 607
17-03-18 04:09:15.694 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 607
17-03-18 04:09:15.694 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 607
17-03-18 04:09:15.694 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:09:15.694 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:09:15.694 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-18 04:09:15.694 -07 000000444 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:09:15.694 -07 000000444 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:09:15.694 -07 000000444 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) start.
17-03-18 04:09:15.884 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28927 800
17-03-18 04:09:16.034 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning grn on 950
17-03-18 04:09:16.094 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 400 ms.
17-03-18 04:09:16.094 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 04:09:16.094 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:09:16.094 -07 000000444 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) end. Duration was 400 ms.
17-03-18 04:09:16.094 -07 000000444 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 04:09:16.094 -07 000000444 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:09:16.094 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:09:16.094 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-18 04:09:16.094 -07 000000444 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:09:16.104 -07 000000444 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-18 04:09:16.234 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1150
17-03-18 04:09:16.234 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1150
17-03-18 04:09:16.234 -07 000000437 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:09:16.234 -07 000000437 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:09:16.234 -07 000000437 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-18 04:09:16.234 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1150
17-03-18 04:09:16.234 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1150
17-03-18 04:09:16.234 -07 000000611 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:09:16.234 -07 000000611 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:09:16.234 -07 000000611 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) start.
17-03-18 04:09:16.424 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP 1343
17-03-18 04:09:16.424 -07 000000618 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:09:16.424 -07 000000610 INF: FPGA: 'CAMDBLSNAP 415 415 200 200 28927 150' command took 2 ms to send, 1343 ms to get response, and 1350 ms overall
17-03-18 04:09:16.424 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 04:09:16.424 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 5 at Y-position 62.3955078125, Z-Position -0.131610692744209. ------
17-03-18 04:09:16.424 -07 000000561 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:09:16.434 -07 000000625 INF: Y Motor: MoveYZ optimized starting. Moving Y to 63.2326 mm, moving Z to -0.13840 mm
17-03-18 04:09:16.434 -07 000000625 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:09:16.434 -07 000000579 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:09:16.434 -07 000000444 INF: Y Motor: Entering MoveAbsStepped (target = 101172 steps, sync = True, waitForSettling = True)
17-03-18 04:09:16.434 -07 000000444 INF: Y Motor: Moving to 63.2326 mm, started at 62.3955 mm, delta = 0.8371 mm
17-03-18 04:09:16.434 -07 000000447 INF: Z Motor: Entering MoveAbsStepped (DAC = 30233, sync = True, waitForSettling = False)
17-03-18 04:09:16.434 -07 000000447 INF: Z Motor: Moving to -0.138398 mm, started at -0.131611 mm, distance = -6.79 um
17-03-18 04:09:16.444 -07 000000561 INF: FPGA: 'FOCMRRCUR 80' command took 2 ms to send, 0 ms to get response, and 11 ms overall
17-03-18 04:09:16.444 -07 000000444 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:09:16.444 -07 000000480 INF: FPGA: Recv YRDPOS 127787
17-03-18 04:09:16.454 -07 000000447 INF: FPGA: Xmit ZDACW 30233\n [Z Motor]
17-03-18 04:09:16.454 -07 000000444 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-18 04:09:16.454 -07 000000444 INF: Y Motor: Encoder = 127787 = motor step 99833.6 = 62.3960 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:09:16.454 -07 000000012 INF: FPGA: Recv ZDACW
17-03-18 04:09:16.454 -07 000000444 INF: Y Motor: Last commanded position = 62.4026 mm (99844.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:09:16.454 -07 000000444 INF: Y Motor: Moving 1339 steps-15
17-03-18 04:09:16.464 -07 000000447 INF: FPGA: 'ZDACW 30233' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-18 04:09:16.464 -07 000000561 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:09:16.474 -07 000000444 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:09:16.484 -07 000000447 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:09:16.484 -07 000000618 INF: FPGA: Recv ZDACR 30233
17-03-18 04:09:16.494 -07 000000447 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 04:09:16.494 -07 000000447 INF: Z Motor: MoveAbsStepped took 54 ms (did NOT wait for settling yet))
17-03-18 04:09:16.634 -07 000000437 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 403 ms.
17-03-18 04:09:16.634 -07 000000437 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 04:09:16.634 -07 000000437 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:09:16.634 -07 000000611 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) end. Duration was 402 ms.
17-03-18 04:09:16.634 -07 000000611 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-18 04:09:16.634 -07 000000611 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:09:16.644 -07 000000501 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:09:16.644 -07 000000611 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:09:16.644 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 120. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1718, R2=1787, Total=3505. Warn if over 250 bubbles per interval.
17-03-18 04:09:16.644 -07 000000437 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-18 04:09:16.644 -07 000000437 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 412 ms.
17-03-18 04:09:16.644 -07 000000611 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-18 04:09:16.664 -07 000000608 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:09:16.664 -07 000000561 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 222 ms overall
17-03-18 04:09:16.844 -07 000000579 INF: FPGA: Recv YMVTILE
17-03-18 04:09:16.844 -07 000000444 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 394 ms overall
17-03-18 04:09:16.894 -07 000000444 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:09:16.894 -07 000000512 INF: FPGA: Recv YRDPOS 129483
17-03-18 04:09:16.904 -07 000000444 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 04:09:16.904 -07 000000444 INF: Y Motor: Encoder = 129483 = motor step 101158.6 = 63.2241 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:09:16.904 -07 000000444 INF: Y Motor: Position error before settling (table move) = -17 encoder counts (-0.008 mm)
17-03-18 04:09:16.904 -07 000000444 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.837 mm, average velocity = 2.125 mm/sec
17-03-18 04:09:17.854 -07 000000444 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:09:17.854 -07 000000447 INF: FPGA: Recv YRDPOS 129483
17-03-18 04:09:17.864 -07 000000444 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:09:17.864 -07 000000444 INF: Y Motor: Encoder = 129483 = motor step 101158.6 = 63.2241 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:09:17.894 -07 000000444 INF: Y Motor: After move to 63.232609, error = -0.008488, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:09:17.894 -07 000000444 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:09:17.894 -07 000000444 INF: Y Motor: Moved to 63.2241 after 1457 ms (table move)
17-03-18 04:09:17.894 -07 000000625 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138398 mm (DAC = 30233)
17-03-18 04:09:17.894 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:17.894 -07 000000480 INF: FPGA: Recv ZSGSRD 30832
17-03-18 04:09:17.904 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 04:09:17.904 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:17.904 -07 000000608 INF: FPGA: Recv ZSGSRD 30830
17-03-18 04:09:17.914 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:17.914 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:17.914 -07 000000579 INF: FPGA: Recv ZSGSRD 30832
17-03-18 04:09:17.924 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:17.924 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:17.924 -07 000000501 INF: FPGA: Recv ZSGSRD 30837
17-03-18 04:09:17.934 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:17.934 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:17.934 -07 000000487 INF: FPGA: Recv ZSGSRD 30834
17-03-18 04:09:17.944 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:17.944 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:17.944 -07 000000012 INF: FPGA: Recv ZSGSRD 30835
17-03-18 04:09:17.954 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:17.954 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:17.954 -07 000000437 INF: FPGA: Recv ZSGSRD 30833
17-03-18 04:09:17.964 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:17.964 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:17.964 -07 000000455 INF: FPGA: Recv ZSGSRD 30833
17-03-18 04:09:17.974 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:17.974 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:17.974 -07 000000611 INF: FPGA: Recv ZSGSRD 30830
17-03-18 04:09:17.984 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:17.984 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:17.984 -07 000000608 INF: FPGA: Recv ZSGSRD 30829
17-03-18 04:09:17.994 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:17.994 -07 000000625 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:09:17.994 -07 000000561 INF: FPGA: Recv ZPIEZORD 26617
17-03-18 04:09:18.004 -07 000000625 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:18.004 -07 000000625 INF: Z Motor: Piezo is near 36.9 V (nominally 0 to 100 V), expect near 46.1 V, since DAC is at 4.613 V. Piezo Error = -9.3 V.
17-03-18 04:09:18.004 -07 000000625 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.4 um, Read 10 ADC samples: Avg = 30832 (-137.6 uncal um), Error = 0.8 uncal um, Median = 30832 (-137.6 uncal um), StdDev = 2 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 30829 (-137.6 uncal um), Max = 30837 (-137.6 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 04:09:18.004 -07 000000625 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30832, posNoise = 5, negNoise = 3
17-03-18 04:09:18.004 -07 000000625 INF: Z Motor: After move to -0.138398, error = 0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:09:18.004 -07 000000625 INF: Z Motor: Settle wait time = 1459 ms, measure time = 106 ms (allowed 150 ms), total time = 1565 ms
17-03-18 04:09:18.004 -07 000000625 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-18 04:09:18.054 -07 000000625 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1619 ms
17-03-18 04:09:18.054 -07 000000625 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:09:18.054 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:09:18.054 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:09:18.054 -07 000000447 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:09:18.054 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:09:18.054 -07 000000455 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:09:18.054 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:09:18.054 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:09:18.054 -07 000000455 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:09:18.064 -07 000000455 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 04:09:18.064 -07 000000455 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:09:18.074 -07 000000455 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-18 04:09:18.074 -07 000000455 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-18 04:09:18.074 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:09:18.124 -07 000000455 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:09:18.424 -07 000000579 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:09:18.424 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:09:18.424 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:09:18.424 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1512312592, 0x0, 559484976) start.
17-03-18 04:09:18.464 -07 000000437 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:09:18.464 -07 000000480 INF: FPGA: Recv CAMSNAP
17-03-18 04:09:18.464 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 382 ms to get response, and 384 ms overall
17-03-18 04:09:18.544 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1512312592, 0x0, 559484976) end. Duration was 119 ms.
17-03-18 04:09:18.544 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:09:18.544 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:09:18.544 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 123 ms.
17-03-18 04:09:18.564 -07 000000455 INF: Autofocus start
17-03-18 04:09:18.564 -07 000000455 INF: MeasureProfile start
17-03-18 04:09:18.564 -07 000000625 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:09:18.564 -07 000000579 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:09:18.574 -07 000000625 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:09:18.574 -07 000000625 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:09:18.574 -07 000000455 INF: MeasureProfile done
17-03-18 04:09:18.574 -07 000000455 INF: X=0  Z correction [um]=-0.02394831
17-03-18 04:09:18.574 -07 000000455 INF: Autofocus finished
17-03-18 04:09:18.774 -07 000000480 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:09:18.774 -07 000000625 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:09:18.784 -07 000000610 INF: ------------ Scan Snapping tile 5 at Y-position 63.22412109375, Z-position -0.138394660765909. ----------
17-03-18 04:09:18.784 -07 000000610 INF: Cycle	121	Tile	5	Exposure Settings		A	415	G	200	T	200	C	415
17-03-18 04:09:18.784 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28740, sync = True, waitForSettling = True)
17-03-18 04:09:18.784 -07 000000610 INF: Z Motor: Moving to -0.131563 mm, started at -0.138395 mm, distance = 6.83 um
17-03-18 04:09:18.784 -07 000000610 INF: FPGA: Xmit ZDACW 28740\n [Z Motor]
17-03-18 04:09:18.784 -07 000000487 INF: FPGA: Recv ZDACW
17-03-18 04:09:18.794 -07 000000610 INF: FPGA: 'ZDACW 28740' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:09:18.794 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:09:18.794 -07 000000590 INF: FPGA: Recv ZDACR 28740
17-03-18 04:09:18.804 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:18.804 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:09:18.954 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:18.954 -07 000000618 INF: FPGA: Recv ZSGSRD 29765
17-03-18 04:09:18.964 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:09:18.964 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:18.964 -07 000000480 INF: FPGA: Recv ZSGSRD 29773
17-03-18 04:09:18.974 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:18.974 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:18.974 -07 000000487 INF: FPGA: Recv ZSGSRD 29763
17-03-18 04:09:18.984 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:18.984 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:18.984 -07 000000012 INF: FPGA: Recv ZSGSRD 29768
17-03-18 04:09:18.994 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:18.994 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:18.994 -07 000000625 INF: FPGA: Recv ZSGSRD 29770
17-03-18 04:09:19.004 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:19.004 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:19.004 -07 000000437 INF: FPGA: Recv ZSGSRD 29768
17-03-18 04:09:19.014 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:19.014 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:19.014 -07 000000611 INF: FPGA: Recv ZSGSRD 29776
17-03-18 04:09:19.024 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:19.024 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:19.024 -07 000000012 INF: FPGA: Recv ZSGSRD 29772
17-03-18 04:09:19.034 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:19.034 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:19.034 -07 000000487 INF: FPGA: Recv ZSGSRD 29769
17-03-18 04:09:19.044 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:19.044 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:19.044 -07 000000444 INF: FPGA: Recv ZSGSRD 29769
17-03-18 04:09:19.054 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:19.054 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:09:19.054 -07 000000561 INF: FPGA: Recv ZPIEZORD 25212
17-03-18 04:09:19.064 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:19.064 -07 000000610 INF: Z Motor: Piezo is near 33.9 V (nominally 0 to 100 V), expect near 43.9 V, since DAC is at 4.385 V. Piezo Error = -10.0 V.
17-03-18 04:09:19.064 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.6 um, Read 10 ADC samples: Avg = 29769 (-130.8 uncal um), Error = 0.8 uncal um, Median = 29769 (-130.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 29763 (-130.7 uncal um), Max = 29776 (-130.8 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 04:09:19.064 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29769, posNoise = 7, negNoise = 6
17-03-18 04:09:19.064 -07 000000610 INF: Z Motor: After move to -0.131563, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:09:19.064 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 04:09:19.064 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:09:19.064 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:09:19.064 -07 000000455 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:09:19.064 -07 000000437 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:09:19.064 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:09:19.064 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:09:19.064 -07 000000474 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:09:19.064 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:09:19.064 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:09:19.064 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:09:19.064 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:09:19.064 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:09:19.074 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 04:09:19.074 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:09:19.074 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 04:09:19.074 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:09:19.084 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 04:09:19.084 -07 000000474 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 04:09:19.084 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 04:09:19.084 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 04:09:19.084 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 415 415 200 200 28917 150\n [Camera]
17-03-18 04:09:19.284 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:09:19.694 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 607
17-03-18 04:09:19.694 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 607
17-03-18 04:09:19.694 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:09:19.694 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:09:19.694 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) start.
17-03-18 04:09:19.704 -07 000000455 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 121, FrontChillerTemperature: 3.978563,
17-03-18 04:09:19.704 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 607
17-03-18 04:09:19.704 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 607
17-03-18 04:09:19.704 -07 000000487 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:09:19.704 -07 000000487 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:09:19.704 -07 000000487 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-18 04:09:19.894 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28917 800
17-03-18 04:09:20.044 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP turning grn on 950
17-03-18 04:09:20.074 -07 000000487 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 377 ms.
17-03-18 04:09:20.074 -07 000000487 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-18 04:09:20.084 -07 000000487 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:09:20.084 -07 000000487 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:09:20.084 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) end. Duration was 384 ms.
17-03-18 04:09:20.084 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-18 04:09:20.084 -07 000000625 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:09:20.084 -07 000000625 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:09:20.084 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-18 04:09:20.094 -07 000000487 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-18 04:09:20.244 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1150
17-03-18 04:09:20.244 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1150
17-03-18 04:09:20.244 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:09:20.244 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:09:20.244 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 2585563240, 0x0, 391868352) start.
17-03-18 04:09:20.244 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1150
17-03-18 04:09:20.244 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1150
17-03-18 04:09:20.244 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:09:20.244 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:09:20.244 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2620985504, 0x0, 418435064) start.
17-03-18 04:09:20.434 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP 1343
17-03-18 04:09:20.434 -07 000000447 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:09:20.434 -07 000000610 INF: FPGA: 'CAMDBLSNAP 415 415 200 200 28917 150' command took 2 ms to send, 1343 ms to get response, and 1349 ms overall
17-03-18 04:09:20.434 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 04:09:20.434 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 6 at Y-position 63.22412109375, Z-Position -0.131565723259217. ------
17-03-18 04:09:20.444 -07 000000608 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:09:20.444 -07 000000437 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.0626 mm, moving Z to -0.13765 mm
17-03-18 04:09:20.444 -07 000000437 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:09:20.444 -07 000000561 INF: Y Motor: Entering MoveAbsStepped (target = 102500 steps, sync = True, waitForSettling = True)
17-03-18 04:09:20.444 -07 000000561 INF: Y Motor: Moving to 64.0626 mm, started at 63.2241 mm, delta = 0.8385 mm
17-03-18 04:09:20.444 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:09:20.444 -07 000000579 INF: Z Motor: Entering MoveAbsStepped (DAC = 30070, sync = True, waitForSettling = False)
17-03-18 04:09:20.444 -07 000000579 INF: Z Motor: Moving to -0.137652 mm, started at -0.131566 mm, distance = -6.09 um
17-03-18 04:09:20.454 -07 000000608 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:20.454 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:09:20.454 -07 000000611 INF: FPGA: Recv YRDPOS 129483
17-03-18 04:09:20.464 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-18 04:09:20.464 -07 000000561 INF: Y Motor: Encoder = 129483 = motor step 101158.6 = 63.2241 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:09:20.464 -07 000000561 INF: Y Motor: Last commanded position = 63.2326 mm (101172.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:09:20.464 -07 000000561 INF: Y Motor: Moving 1342 steps-17
17-03-18 04:09:20.464 -07 000000579 INF: FPGA: Xmit ZDACW 30070\n [Z Motor]
17-03-18 04:09:20.464 -07 000000444 INF: FPGA: Recv ZDACW
17-03-18 04:09:20.474 -07 000000608 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:09:20.474 -07 000000579 INF: FPGA: 'ZDACW 30070' command took 1 ms to send, 0 ms to get response, and 25 ms overall
17-03-18 04:09:20.484 -07 000000561 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:09:20.494 -07 000000579 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:09:20.494 -07 000000455 INF: FPGA: Recv ZDACR 30070
17-03-18 04:09:20.504 -07 000000579 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 04:09:20.504 -07 000000579 INF: Z Motor: MoveAbsStepped took 55 ms (did NOT wait for settling yet))
17-03-18 04:09:20.644 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 2585563240, 0x0, 391868352) end. Duration was 397 ms.
17-03-18 04:09:20.644 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 04:09:20.644 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:09:20.644 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2620985504, 0x0, 418435064) end. Duration was 396 ms.
17-03-18 04:09:20.644 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-18 04:09:20.644 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:09:20.644 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:09:20.644 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 04:09:20.644 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-18 04:09:20.654 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 407 ms.
17-03-18 04:09:20.674 -07 000000012 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:09:20.674 -07 000000608 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 223 ms overall
17-03-18 04:09:20.854 -07 000000625 INF: FPGA: Recv YMVTILE
17-03-18 04:09:20.854 -07 000000561 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 04:09:20.904 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:09:20.904 -07 000000618 INF: FPGA: Recv YRDPOS 131189
17-03-18 04:09:20.914 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 04:09:20.914 -07 000000561 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:09:20.914 -07 000000561 INF: Y Motor: Position error before settling (table move) = -11 encoder counts (-0.005 mm)
17-03-18 04:09:20.914 -07 000000561 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.838 mm, average velocity = 2.107 mm/sec
17-03-18 04:09:21.644 -07 000000012 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:09:21.644 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 120. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1718, R2=1787, Total=3505. Warn if over 250 bubbles per interval.
17-03-18 04:09:21.864 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:09:21.864 -07 000000579 INF: FPGA: Recv YRDPOS 131189
17-03-18 04:09:21.874 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:21.874 -07 000000561 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:09:21.894 -07 000000561 INF: Y Motor: After move to 64.062607, error = -0.005478, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:09:21.894 -07 000000561 INF: Y Motor: Position error after settling (table move) = -11 encoder counts (-0.005 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:09:21.894 -07 000000561 INF: Y Motor: Moved to 64.0571 after 1452 ms (table move)
17-03-18 04:09:21.904 -07 000000437 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137652 mm (DAC = 30070)
17-03-18 04:09:21.904 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:21.904 -07 000000618 INF: FPGA: Recv ZSGSRD 30712
17-03-18 04:09:21.914 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:21.914 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:21.914 -07 000000455 INF: FPGA: Recv ZSGSRD 30718
17-03-18 04:09:21.924 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:21.924 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:21.924 -07 000000611 INF: FPGA: Recv ZSGSRD 30720
17-03-18 04:09:21.934 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:21.934 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:21.934 -07 000000561 INF: FPGA: Recv ZSGSRD 30716
17-03-18 04:09:21.944 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:21.944 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:21.944 -07 000000618 INF: FPGA: Recv ZSGSRD 30720
17-03-18 04:09:21.954 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:21.954 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:21.954 -07 000000455 INF: FPGA: Recv ZSGSRD 30720
17-03-18 04:09:21.964 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:21.964 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:21.964 -07 000000579 INF: FPGA: Recv ZSGSRD 30712
17-03-18 04:09:21.974 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:21.974 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:21.974 -07 000000625 INF: FPGA: Recv ZSGSRD 30713
17-03-18 04:09:21.984 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:21.984 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:21.984 -07 000000512 INF: FPGA: Recv ZSGSRD 30714
17-03-18 04:09:21.994 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:21.994 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:21.994 -07 000000487 INF: FPGA: Recv ZSGSRD 30722
17-03-18 04:09:22.004 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:22.004 -07 000000437 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:09:22.004 -07 000000012 INF: FPGA: Recv ZPIEZORD 26487
17-03-18 04:09:22.014 -07 000000437 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:22.014 -07 000000437 INF: Z Motor: Piezo is near 36.6 V (nominally 0 to 100 V), expect near 45.9 V, since DAC is at 4.588 V. Piezo Error = -9.3 V.
17-03-18 04:09:22.014 -07 000000437 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.7 um, Read 10 ADC samples: Avg = 30717 (-136.9 uncal um), Error = 0.8 uncal um, Median = 30717 (-136.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 30712 (-136.8 uncal um), Max = 30722 (-136.9 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 04:09:22.014 -07 000000437 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30717, posNoise = 5, negNoise = 5
17-03-18 04:09:22.014 -07 000000437 INF: Z Motor: After move to -0.137652, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:09:22.014 -07 000000437 INF: Z Motor: Settle wait time = 1456 ms, measure time = 109 ms (allowed 150 ms), total time = 1565 ms
17-03-18 04:09:22.014 -07 000000437 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-18 04:09:22.064 -07 000000437 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1619 ms
17-03-18 04:09:22.064 -07 000000437 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:09:22.064 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:09:22.064 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:09:22.064 -07 000000444 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:09:22.064 -07 000000447 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:09:22.064 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:09:22.064 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:09:22.064 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 04:09:22.064 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:09:22.074 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 04:09:22.074 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:09:22.074 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 04:09:22.084 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 04:09:22.084 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:09:22.124 -07 000000474 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:09:22.424 -07 000000480 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:09:22.424 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:09:22.424 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:09:22.424 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2522190040, 0x0, 559484976) start.
17-03-18 04:09:22.464 -07 000000618 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:09:22.464 -07 000000512 INF: FPGA: Recv CAMSNAP
17-03-18 04:09:22.464 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 384 ms overall
17-03-18 04:09:22.544 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2522190040, 0x0, 559484976) end. Duration was 117 ms.
17-03-18 04:09:22.544 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:09:22.544 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 04:09:22.544 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-18 04:09:22.564 -07 000000611 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:09:22.564 -07 000000444 INF: Autofocus start
17-03-18 04:09:22.564 -07 000000444 INF: MeasureProfile start
17-03-18 04:09:22.564 -07 000000625 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:09:22.574 -07 000000611 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:09:22.574 -07 000000611 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:09:22.574 -07 000000444 INF: MeasureProfile done
17-03-18 04:09:22.574 -07 000000444 INF: X=0  Z correction [um]=-0.02394831
17-03-18 04:09:22.574 -07 000000444 INF: Autofocus finished
17-03-18 04:09:22.774 -07 000000590 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:09:22.774 -07 000000611 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 203 ms overall
17-03-18 04:09:22.774 -07 000000610 INF: ------------ Scan Snapping tile 6 at Y-position 64.05712890625, Z-position -0.137655876369606. ----------
17-03-18 04:09:22.784 -07 000000610 INF: Cycle	121	Tile	6	Exposure Settings		A	415	G	200	T	200	C	415
17-03-18 04:09:22.784 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28578, sync = True, waitForSettling = True)
17-03-18 04:09:22.784 -07 000000610 INF: Z Motor: Moving to -0.130822 mm, started at -0.137656 mm, distance = 6.83 um
17-03-18 04:09:22.784 -07 000000610 INF: FPGA: Xmit ZDACW 28578\n [Z Motor]
17-03-18 04:09:22.784 -07 000000487 INF: FPGA: Recv ZDACW
17-03-18 04:09:22.794 -07 000000610 INF: FPGA: 'ZDACW 28578' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 04:09:22.794 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:09:22.794 -07 000000437 INF: FPGA: Recv ZDACR 28578
17-03-18 04:09:22.804 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:22.804 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:09:22.954 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:22.954 -07 000000618 INF: FPGA: Recv ZSGSRD 29654
17-03-18 04:09:22.964 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:09:22.964 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:22.964 -07 000000474 INF: FPGA: Recv ZSGSRD 29657
17-03-18 04:09:22.974 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:22.974 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:22.974 -07 000000579 INF: FPGA: Recv ZSGSRD 29652
17-03-18 04:09:22.984 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:22.984 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:22.984 -07 000000487 INF: FPGA: Recv ZSGSRD 29657
17-03-18 04:09:22.994 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:22.994 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:22.994 -07 000000447 INF: FPGA: Recv ZSGSRD 29653
17-03-18 04:09:23.004 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:23.004 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:23.004 -07 000000444 INF: FPGA: Recv ZSGSRD 29654
17-03-18 04:09:23.014 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:23.014 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:23.014 -07 000000590 INF: FPGA: Recv ZSGSRD 29654
17-03-18 04:09:23.024 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:23.024 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:23.024 -07 000000501 INF: FPGA: Recv ZSGSRD 29649
17-03-18 04:09:23.034 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:23.034 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:23.034 -07 000000579 INF: FPGA: Recv ZSGSRD 29658
17-03-18 04:09:23.044 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:23.044 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:23.044 -07 000000480 INF: FPGA: Recv ZSGSRD 29654
17-03-18 04:09:23.054 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:23.054 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:09:23.054 -07 000000512 INF: FPGA: Recv ZPIEZORD 25100
17-03-18 04:09:23.064 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:23.064 -07 000000610 INF: Z Motor: Piezo is near 33.6 V (nominally 0 to 100 V), expect near 43.6 V, since DAC is at 4.361 V. Piezo Error = -10.0 V.
17-03-18 04:09:23.064 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.8 um, Read 10 ADC samples: Avg = 29654 (-130.0 uncal um), Error = 0.8 uncal um, Median = 29654 (-130.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29649 (-130.0 uncal um), Max = 29658 (-130.1 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 04:09:23.064 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29654, posNoise = 4, negNoise = 5
17-03-18 04:09:23.064 -07 000000610 INF: Z Motor: After move to -0.130822, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:09:23.064 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 04:09:23.064 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:09:23.064 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:09:23.074 -07 000000012 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:09:23.074 -07 000000444 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:09:23.074 -07 000000579 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:09:23.074 -07 000000447 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:09:23.074 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:09:23.074 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:09:23.074 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:09:23.074 -07 000000447 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:09:23.074 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:09:23.074 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:09:23.074 -07 000000447 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 04:09:23.074 -07 000000447 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:09:23.074 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 04:09:23.074 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:09:23.084 -07 000000447 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 04:09:23.084 -07 000000447 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 04:09:23.084 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 11 ms.
17-03-18 04:09:23.084 -07 000000579 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 04:09:23.094 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 415 415 200 200 28754 150\n [Camera]
17-03-18 04:09:23.294 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:09:23.704 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 607
17-03-18 04:09:23.704 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 607
17-03-18 04:09:23.704 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 607
17-03-18 04:09:23.714 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 607
17-03-18 04:09:23.714 -07 000000487 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:09:23.714 -07 000000487 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:09:23.714 -07 000000487 INF: Camera: sBCa_ReadImage(785074288, 2684358704, 0x0, 391868352) start.
17-03-18 04:09:23.714 -07 000000611 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:09:23.714 -07 000000611 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:09:23.714 -07 000000611 INF: Camera: sBCa_ReadImage(785074704, 2719780968, 0x0, 418435064) start.
17-03-18 04:09:23.894 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28754 800
17-03-18 04:09:24.054 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP turning grn on 952
17-03-18 04:09:24.114 -07 000000487 INF: Camera: sBCa_ReadImage(785074288, 2684358704, 0x0, 391868352) end. Duration was 400 ms.
17-03-18 04:09:24.114 -07 000000487 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 04:09:24.114 -07 000000487 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:09:24.114 -07 000000611 INF: Camera: sBCa_ReadImage(785074704, 2719780968, 0x0, 418435064) end. Duration was 400 ms.
17-03-18 04:09:24.114 -07 000000611 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 04:09:24.114 -07 000000611 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:09:24.114 -07 000000487 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 04:09:24.114 -07 000000487 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-18 04:09:24.114 -07 000000611 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 04:09:24.124 -07 000000611 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-18 04:09:24.254 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1152
17-03-18 04:09:24.254 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1152
17-03-18 04:09:24.254 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:09:24.254 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:09:24.254 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2755203232, 0x0, 391868352) start.
17-03-18 04:09:24.254 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1152
17-03-18 04:09:24.254 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1152
17-03-18 04:09:24.254 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:09:24.254 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:09:24.254 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2818576432, 0x0, 418435064) start.
17-03-18 04:09:24.444 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP 1342
17-03-18 04:09:24.444 -07 000000608 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:09:24.444 -07 000000610 INF: FPGA: 'CAMDBLSNAP 415 415 200 200 28754 150' command took 2 ms to send, 1341 ms to get response, and 1350 ms overall
17-03-18 04:09:24.444 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 04:09:24.444 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 7 at Y-position 64.05712890625, Z-Position -0.130826938862914. ------
17-03-18 04:09:24.444 -07 000000625 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:09:24.444 -07 000000487 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.8926 mm, moving Z to -0.13736 mm
17-03-18 04:09:24.444 -07 000000487 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:09:24.454 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:09:24.454 -07 000000561 INF: Z Motor: Entering MoveAbsStepped (DAC = 30006, sync = True, waitForSettling = False)
17-03-18 04:09:24.454 -07 000000611 INF: Y Motor: Entering MoveAbsStepped (target = 103828 steps, sync = True, waitForSettling = True)
17-03-18 04:09:24.454 -07 000000611 INF: Y Motor: Moving to 64.8926 mm, started at 64.0571 mm, delta = 0.8355 mm
17-03-18 04:09:24.454 -07 000000611 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:09:24.454 -07 000000625 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 04:09:24.454 -07 000000561 INF: Z Motor: Moving to -0.137359 mm, started at -0.130827 mm, distance = -6.53 um
17-03-18 04:09:24.454 -07 000000447 INF: FPGA: Recv YRDPOS 131189
17-03-18 04:09:24.464 -07 000000611 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 04:09:24.464 -07 000000611 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:09:24.464 -07 000000611 INF: Y Motor: Last commanded position = 64.0626 mm (102500.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:09:24.464 -07 000000611 INF: Y Motor: Moving 1337 steps-11
17-03-18 04:09:24.464 -07 000000561 INF: FPGA: Xmit ZDACW 30006\n [Z Motor]
17-03-18 04:09:24.464 -07 000000590 INF: FPGA: Recv ZDACW
17-03-18 04:09:24.474 -07 000000625 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:09:24.474 -07 000000561 INF: FPGA: 'ZDACW 30006' command took 1 ms to send, 0 ms to get response, and 17 ms overall
17-03-18 04:09:24.484 -07 000000611 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:09:24.494 -07 000000561 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:09:24.494 -07 000000012 INF: FPGA: Recv ZDACR 30006
17-03-18 04:09:24.504 -07 000000561 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 04:09:24.504 -07 000000561 INF: Z Motor: MoveAbsStepped took 48 ms (did NOT wait for settling yet))
17-03-18 04:09:24.654 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2755203232, 0x0, 391868352) end. Duration was 402 ms.
17-03-18 04:09:24.654 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 04:09:24.654 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:09:24.654 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2818576432, 0x0, 418435064) end. Duration was 400 ms.
17-03-18 04:09:24.654 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 04:09:24.654 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:09:24.664 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:09:24.664 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 04:09:24.664 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 410 ms.
17-03-18 04:09:24.664 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-18 04:09:24.674 -07 000000447 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:09:24.674 -07 000000625 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 194 ms to get response, and 221 ms overall
17-03-18 04:09:24.854 -07 000000625 INF: FPGA: Recv YMVTILE
17-03-18 04:09:24.854 -07 000000611 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 04:09:24.904 -07 000000611 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:09:24.904 -07 000000444 INF: FPGA: Recv YRDPOS 132872
17-03-18 04:09:24.914 -07 000000611 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 04:09:24.914 -07 000000611 INF: Y Motor: Encoder = 132872 = motor step 103806.3 = 64.8789 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:09:24.914 -07 000000611 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-18 04:09:24.914 -07 000000611 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.835 mm, average velocity = 2.104 mm/sec
17-03-18 04:09:25.064 -07 000000455 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 121, FrontChillerTemperature: 4.011254,
17-03-18 04:09:25.864 -07 000000611 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:09:25.864 -07 000000447 INF: FPGA: Recv YRDPOS 132872
17-03-18 04:09:25.874 -07 000000611 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:09:25.874 -07 000000611 INF: Y Motor: Encoder = 132872 = motor step 103806.3 = 64.8789 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:09:25.904 -07 000000611 INF: Y Motor: After move to 64.892609, error = -0.013702, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:09:25.904 -07 000000611 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:09:25.904 -07 000000611 INF: Y Motor: Moved to 64.8789 after 1448 ms (table move)
17-03-18 04:09:25.904 -07 000000487 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137359 mm (DAC = 30006)
17-03-18 04:09:25.904 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:25.904 -07 000000618 INF: FPGA: Recv ZSGSRD 30670
17-03-18 04:09:25.914 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 04:09:25.914 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:25.914 -07 000000501 INF: FPGA: Recv ZSGSRD 30672
17-03-18 04:09:25.924 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:25.924 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:25.924 -07 000000480 INF: FPGA: Recv ZSGSRD 30676
17-03-18 04:09:25.934 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:25.934 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:25.934 -07 000000611 INF: FPGA: Recv ZSGSRD 30675
17-03-18 04:09:25.944 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:25.944 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:25.944 -07 000000618 INF: FPGA: Recv ZSGSRD 30674
17-03-18 04:09:25.954 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:25.954 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:25.954 -07 000000590 INF: FPGA: Recv ZSGSRD 30672
17-03-18 04:09:25.964 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:25.964 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:25.964 -07 000000590 INF: FPGA: Recv ZSGSRD 30671
17-03-18 04:09:25.974 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:25.974 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:25.974 -07 000000012 INF: FPGA: Recv ZSGSRD 30674
17-03-18 04:09:25.984 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:25.984 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:25.984 -07 000000444 INF: FPGA: Recv ZSGSRD 30667
17-03-18 04:09:25.994 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:25.994 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:25.994 -07 000000447 INF: FPGA: Recv ZSGSRD 30671
17-03-18 04:09:26.004 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:26.004 -07 000000487 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:09:26.004 -07 000000501 INF: FPGA: Recv ZPIEZORD 26408
17-03-18 04:09:26.014 -07 000000487 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:26.014 -07 000000487 INF: Z Motor: Piezo is near 36.4 V (nominally 0 to 100 V), expect near 45.8 V, since DAC is at 4.579 V. Piezo Error = -9.4 V.
17-03-18 04:09:26.014 -07 000000487 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.4 um, Read 10 ADC samples: Avg = 30672 (-136.6 uncal um), Error = 0.8 uncal um, Median = 30672 (-136.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 30667 (-136.5 uncal um), Max = 30676 (-136.6 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 04:09:26.014 -07 000000487 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30672, posNoise = 4, negNoise = 5
17-03-18 04:09:26.014 -07 000000487 INF: Z Motor: After move to -0.137359, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:09:26.014 -07 000000487 INF: Z Motor: Settle wait time = 1452 ms, measure time = 105 ms (allowed 150 ms), total time = 1557 ms
17-03-18 04:09:26.014 -07 000000487 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 04:09:26.064 -07 000000487 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1611 ms
17-03-18 04:09:26.064 -07 000000487 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:09:26.064 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:09:26.064 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:09:26.064 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:09:26.064 -07 000000474 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:09:26.064 -07 000000611 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:09:26.064 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:09:26.064 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:09:26.064 -07 000000611 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:09:26.074 -07 000000611 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 04:09:26.074 -07 000000611 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:09:26.084 -07 000000611 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 04:09:26.084 -07 000000611 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-18 04:09:26.084 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:09:26.134 -07 000000455 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:09:26.434 -07 000000590 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:09:26.434 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:09:26.434 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:09:26.584 -07 000000487 INF: FPGA: Recv @CAMSNAP 383
17-03-18 04:09:26.584 -07 000000487 INF: FPGA: Recv CAMSNAP
17-03-18 04:09:26.584 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 495 ms to get response, and 497 ms overall
17-03-18 04:09:26.584 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2673282832, 0x0, 559484976) start.
17-03-18 04:09:26.644 -07 000000501 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:09:26.704 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2673282832, 0x0, 559484976) end. Duration was 117 ms.
17-03-18 04:09:26.704 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:09:26.704 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 04:09:26.704 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 270 ms.
17-03-18 04:09:26.704 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 120. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1718, R2=1787, Total=3505. Warn if over 250 bubbles per interval.
17-03-18 04:09:26.784 -07 000000455 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:09:26.784 -07 000000012 INF: Autofocus start
17-03-18 04:09:26.784 -07 000000012 INF: MeasureProfile start
17-03-18 04:09:26.784 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:09:26.794 -07 000000455 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 04:09:26.794 -07 000000455 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:09:26.794 -07 000000012 INF: MeasureProfile done
17-03-18 04:09:26.794 -07 000000012 INF: X=6  Z correction [um]=0.004914018
17-03-18 04:09:26.794 -07 000000012 INF: Autofocus finished
17-03-18 04:09:26.994 -07 000000487 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:09:26.994 -07 000000455 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:09:26.994 -07 000000610 INF: ------------ Scan Snapping tile 7 at Y-position 64.87890625, Z-position -0.137366786823227. ----------
17-03-18 04:09:26.994 -07 000000610 INF: Cycle	121	Tile	7	Exposure Settings		A	415	G	200	T	200	C	415
17-03-18 04:09:27.004 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28520, sync = True, waitForSettling = True)
17-03-18 04:09:27.004 -07 000000610 INF: Z Motor: Moving to -0.130556 mm, started at -0.137367 mm, distance = 6.81 um
17-03-18 04:09:27.004 -07 000000610 INF: FPGA: Xmit ZDACW 28520\n [Z Motor]
17-03-18 04:09:27.004 -07 000000474 INF: FPGA: Recv ZDACW
17-03-18 04:09:27.014 -07 000000610 INF: FPGA: 'ZDACW 28520' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 04:09:27.014 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:09:27.014 -07 000000561 INF: FPGA: Recv ZDACR 28520
17-03-18 04:09:27.024 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:27.024 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:09:27.174 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:27.174 -07 000000608 INF: FPGA: Recv ZSGSRD 29615
17-03-18 04:09:27.184 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:09:27.184 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:27.184 -07 000000444 INF: FPGA: Recv ZSGSRD 29619
17-03-18 04:09:27.194 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:27.194 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:27.194 -07 000000501 INF: FPGA: Recv ZSGSRD 29616
17-03-18 04:09:27.204 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:27.204 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:27.204 -07 000000561 INF: FPGA: Recv ZSGSRD 29609
17-03-18 04:09:27.214 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:27.214 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:27.214 -07 000000579 INF: FPGA: Recv ZSGSRD 29618
17-03-18 04:09:27.224 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:27.224 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:27.224 -07 000000444 INF: FPGA: Recv ZSGSRD 29611
17-03-18 04:09:27.234 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:27.234 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:27.234 -07 000000618 INF: FPGA: Recv ZSGSRD 29617
17-03-18 04:09:27.244 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:27.244 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:27.244 -07 000000561 INF: FPGA: Recv ZSGSRD 29612
17-03-18 04:09:27.254 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:27.254 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:27.254 -07 000000437 INF: FPGA: Recv ZSGSRD 29613
17-03-18 04:09:27.264 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:27.264 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:27.264 -07 000000625 INF: FPGA: Recv ZSGSRD 29614
17-03-18 04:09:27.274 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:27.274 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:09:27.274 -07 000000611 INF: FPGA: Recv ZPIEZORD 25032
17-03-18 04:09:27.284 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:27.284 -07 000000610 INF: Z Motor: Piezo is near 33.5 V (nominally 0 to 100 V), expect near 43.5 V, since DAC is at 4.352 V. Piezo Error = -10.0 V.
17-03-18 04:09:27.284 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.6 um, Read 10 ADC samples: Avg = 29614 (-129.8 uncal um), Error = 0.8 uncal um, Median = 29614 (-129.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29609 (-129.8 uncal um), Max = 29619 (-129.8 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 04:09:27.284 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29614, posNoise = 5, negNoise = 5
17-03-18 04:09:27.284 -07 000000610 INF: Z Motor: After move to -0.130556, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:09:27.284 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 04:09:27.284 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:09:27.284 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:09:27.284 -07 000000437 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:09:27.284 -07 000000487 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:09:27.284 -07 000000590 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:09:27.284 -07 000000444 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:09:27.284 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:09:27.284 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:09:27.284 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:09:27.284 -07 000000590 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:09:27.284 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:09:27.284 -07 000000444 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:09:27.284 -07 000000590 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 04:09:27.284 -07 000000590 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:09:27.294 -07 000000444 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 04:09:27.294 -07 000000444 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:09:27.294 -07 000000590 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 04:09:27.294 -07 000000590 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 04:09:27.304 -07 000000444 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 04:09:27.304 -07 000000444 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 04:09:27.304 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 415 415 200 200 28697 150\n [Camera]
17-03-18 04:09:27.504 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:09:27.914 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 607
17-03-18 04:09:27.914 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 607
17-03-18 04:09:27.914 -07 000000437 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:09:27.924 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 607
17-03-18 04:09:27.924 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 607
17-03-18 04:09:27.924 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:09:27.924 -07 000000437 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:09:27.924 -07 000000437 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-18 04:09:27.924 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:09:27.934 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-18 04:09:28.104 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28697 800
17-03-18 04:09:28.254 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP turning grn on 950
17-03-18 04:09:28.304 -07 000000437 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 382 ms.
17-03-18 04:09:28.304 -07 000000437 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-18 04:09:28.304 -07 000000437 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:09:28.304 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 379 ms.
17-03-18 04:09:28.304 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-18 04:09:28.304 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:09:28.314 -07 000000437 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:09:28.314 -07 000000437 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-18 04:09:28.314 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:09:28.324 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 04:09:28.464 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1150
17-03-18 04:09:28.464 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1150
17-03-18 04:09:28.464 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:09:28.464 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1150
17-03-18 04:09:28.464 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1150
17-03-18 04:09:28.464 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:09:28.584 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:09:28.584 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 2620985504, 0x0, 418435064) start.
17-03-18 04:09:28.584 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:09:28.584 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 2585563240, 0x0, 391868352) start.
17-03-18 04:09:28.654 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP 1343
17-03-18 04:09:28.654 -07 000000590 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:09:28.654 -07 000000610 INF: FPGA: 'CAMDBLSNAP 415 415 200 200 28697 150' command took 4 ms to send, 1342 ms to get response, and 1350 ms overall
17-03-18 04:09:28.654 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 04:09:28.654 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 8 at Y-position 64.87890625, Z-Position -0.130569970377244. ------
17-03-18 04:09:28.654 -07 000000611 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:09:28.654 -07 000000480 INF: Y Motor: MoveYZ optimized starting. Moving Y to 65.7226 mm, moving Z to -0.13720 mm
17-03-18 04:09:28.654 -07 000000480 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:09:28.664 -07 000000501 INF: Y Motor: Entering MoveAbsStepped (target = 105156 steps, sync = True, waitForSettling = True)
17-03-18 04:09:28.664 -07 000000501 INF: Y Motor: Moving to 65.7226 mm, started at 64.8789 mm, delta = 0.8437 mm
17-03-18 04:09:28.664 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:09:28.664 -07 000000474 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:09:28.664 -07 000000611 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 04:09:28.664 -07 000000012 INF: Z Motor: Entering MoveAbsStepped (DAC = 29971, sync = True, waitForSettling = False)
17-03-18 04:09:28.664 -07 000000012 INF: Z Motor: Moving to -0.137198 mm, started at -0.130570 mm, distance = -6.63 um
17-03-18 04:09:28.664 -07 000000561 INF: FPGA: Recv YRDPOS 132873
17-03-18 04:09:28.674 -07 000000012 INF: FPGA: Xmit ZDACW 29971\n [Z Motor]
17-03-18 04:09:28.674 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:28.674 -07 000000501 INF: Y Motor: Encoder = 132873 = motor step 103807.0 = 64.8794 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:09:28.674 -07 000000590 INF: FPGA: Recv ZDACW
17-03-18 04:09:28.674 -07 000000501 INF: Y Motor: Last commanded position = 64.8926 mm (103828.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:09:28.674 -07 000000501 INF: Y Motor: Moving 1349 steps-28
17-03-18 04:09:28.684 -07 000000611 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:09:28.684 -07 000000012 INF: FPGA: 'ZDACW 29971' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-18 04:09:28.694 -07 000000501 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:09:28.704 -07 000000012 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:09:28.704 -07 000000437 INF: FPGA: Recv ZDACR 29971
17-03-18 04:09:28.714 -07 000000012 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 04:09:28.714 -07 000000012 INF: Z Motor: MoveAbsStepped took 48 ms (did NOT wait for settling yet))
17-03-18 04:09:28.884 -07 000000618 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:09:28.884 -07 000000611 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 221 ms overall
17-03-18 04:09:28.974 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 2620985504, 0x0, 418435064) end. Duration was 396 ms.
17-03-18 04:09:28.974 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-18 04:09:28.974 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:09:28.984 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 2585563240, 0x0, 391868352) end. Duration was 397 ms.
17-03-18 04:09:28.984 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 04:09:28.984 -07 000000444 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:09:28.984 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:09:28.984 -07 000000444 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:09:28.984 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 524 ms.
17-03-18 04:09:28.994 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 526 ms.
17-03-18 04:09:29.064 -07 000000611 INF: FPGA: Recv YMVTILE
17-03-18 04:09:29.064 -07 000000501 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 390 ms overall
17-03-18 04:09:29.114 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:09:29.114 -07 000000447 INF: FPGA: Recv YRDPOS 134582
17-03-18 04:09:29.124 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 04:09:29.124 -07 000000501 INF: Y Motor: Encoder = 134582 = motor step 105142.2 = 65.7139 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:09:29.124 -07 000000501 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-18 04:09:29.124 -07 000000501 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 390 ms, distance = 0.844 mm, average velocity = 2.163 mm/sec
17-03-18 04:09:30.074 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:09:30.074 -07 000000618 INF: FPGA: Recv YRDPOS 134582
17-03-18 04:09:30.084 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:09:30.084 -07 000000501 INF: Y Motor: Encoder = 134582 = motor step 105142.2 = 65.7139 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:09:30.114 -07 000000501 INF: Y Motor: After move to 65.722610, error = -0.008743, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:09:30.114 -07 000000501 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:09:30.114 -07 000000501 INF: Y Motor: Moved to 65.7139 after 1455 ms (table move)
17-03-18 04:09:30.124 -07 000000480 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137198 mm (DAC = 29971)
17-03-18 04:09:30.124 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:30.124 -07 000000590 INF: FPGA: Recv ZSGSRD 30647
17-03-18 04:09:30.134 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:30.134 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:30.134 -07 000000012 INF: FPGA: Recv ZSGSRD 30650
17-03-18 04:09:30.144 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:30.144 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:30.144 -07 000000625 INF: FPGA: Recv ZSGSRD 30647
17-03-18 04:09:30.154 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:30.154 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:30.154 -07 000000611 INF: FPGA: Recv ZSGSRD 30649
17-03-18 04:09:30.164 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:30.164 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:30.164 -07 000000590 INF: FPGA: Recv ZSGSRD 30648
17-03-18 04:09:30.174 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:30.174 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:30.174 -07 000000455 INF: FPGA: Recv ZSGSRD 30641
17-03-18 04:09:30.184 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:30.184 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:30.184 -07 000000444 INF: FPGA: Recv ZSGSRD 30645
17-03-18 04:09:30.194 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:30.194 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:30.194 -07 000000611 INF: FPGA: Recv ZSGSRD 30644
17-03-18 04:09:30.204 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:30.204 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:30.204 -07 000000474 INF: FPGA: Recv ZSGSRD 30646
17-03-18 04:09:30.214 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:30.214 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:30.214 -07 000000608 INF: FPGA: Recv ZSGSRD 30650
17-03-18 04:09:30.224 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:30.224 -07 000000480 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:09:30.224 -07 000000625 INF: FPGA: Recv ZPIEZORD 26401
17-03-18 04:09:30.234 -07 000000480 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:30.234 -07 000000480 INF: Z Motor: Piezo is near 36.4 V (nominally 0 to 100 V), expect near 45.7 V, since DAC is at 4.573 V. Piezo Error = -9.3 V.
17-03-18 04:09:30.234 -07 000000480 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.2 um, Read 10 ADC samples: Avg = 30647 (-136.4 uncal um), Error = 0.8 uncal um, Median = 30647 (-136.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 30641 (-136.4 uncal um), Max = 30650 (-136.4 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 04:09:30.234 -07 000000480 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30647, posNoise = 3, negNoise = 6
17-03-18 04:09:30.234 -07 000000480 INF: Z Motor: After move to -0.137198, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:09:30.234 -07 000000480 INF: Z Motor: Settle wait time = 1459 ms, measure time = 110 ms (allowed 150 ms), total time = 1569 ms
17-03-18 04:09:30.234 -07 000000480 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-18 04:09:30.274 -07 000000480 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1612 ms
17-03-18 04:09:30.274 -07 000000480 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:09:30.274 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:09:30.274 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:09:30.274 -07 000000447 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:09:30.274 -07 000000012 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:09:30.274 -07 000000474 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:09:30.274 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:09:30.274 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 04:09:30.274 -07 000000474 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:09:30.284 -07 000000474 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 04:09:30.284 -07 000000474 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:09:30.284 -07 000000474 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 04:09:30.284 -07 000000474 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 04:09:30.294 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:09:30.334 -07 000000618 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:09:30.424 -07 000000474 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 121, FrontChillerTemperature: 3.997626,
17-03-18 04:09:30.634 -07 000000561 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:09:30.634 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:09:30.634 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:09:30.644 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2281705520, 0x0, 559484976) start.
17-03-18 04:09:30.674 -07 000000444 INF: FPGA: Recv @CAMSNAP 381
17-03-18 04:09:30.674 -07 000000618 INF: FPGA: Recv CAMSNAP
17-03-18 04:09:30.674 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 386 ms overall
17-03-18 04:09:30.754 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2281705520, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 04:09:30.754 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:09:30.754 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 04:09:30.754 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 120 ms.
17-03-18 04:09:30.774 -07 000000437 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:09:30.774 -07 000000625 INF: Autofocus start
17-03-18 04:09:30.774 -07 000000625 INF: MeasureProfile start
17-03-18 04:09:30.774 -07 000000487 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:09:30.784 -07 000000437 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:09:30.784 -07 000000437 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:09:30.784 -07 000000625 INF: MeasureProfile done
17-03-18 04:09:30.784 -07 000000625 INF: X=16  Z correction [um]=0.0530179
17-03-18 04:09:30.784 -07 000000625 INF: Autofocus finished
17-03-18 04:09:30.984 -07 000000512 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:09:30.984 -07 000000437 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:09:30.984 -07 000000610 INF: ------------ Scan Snapping tile 8 at Y-position 65.7138671875, Z-position -0.137206181519683. ----------
17-03-18 04:09:30.984 -07 000000610 INF: Cycle	121	Tile	8	Exposure Settings		A	415	G	200	T	200	C	415
17-03-18 04:09:30.994 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28495, sync = True, waitForSettling = True)
17-03-18 04:09:30.994 -07 000000610 INF: Z Motor: Moving to -0.130442 mm, started at -0.137206 mm, distance = 6.76 um
17-03-18 04:09:30.994 -07 000000610 INF: FPGA: Xmit ZDACW 28495\n [Z Motor]
17-03-18 04:09:30.994 -07 000000611 INF: FPGA: Recv ZDACW
17-03-18 04:09:31.004 -07 000000610 INF: FPGA: 'ZDACW 28495' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 04:09:31.004 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:09:31.004 -07 000000561 INF: FPGA: Recv ZDACR 28495
17-03-18 04:09:31.014 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:31.014 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:09:31.164 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:31.164 -07 000000447 INF: FPGA: Recv ZSGSRD 29596
17-03-18 04:09:31.174 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:09:31.174 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:31.174 -07 000000579 INF: FPGA: Recv ZSGSRD 29592
17-03-18 04:09:31.184 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:31.184 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:31.184 -07 000000501 INF: FPGA: Recv ZSGSRD 29597
17-03-18 04:09:31.194 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:31.194 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:31.194 -07 000000590 INF: FPGA: Recv ZSGSRD 29591
17-03-18 04:09:31.204 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:31.204 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:31.204 -07 000000608 INF: FPGA: Recv ZSGSRD 29595
17-03-18 04:09:31.214 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:31.214 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:31.214 -07 000000487 INF: FPGA: Recv ZSGSRD 29597
17-03-18 04:09:31.224 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:31.224 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:31.224 -07 000000590 INF: FPGA: Recv ZSGSRD 29593
17-03-18 04:09:31.234 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:31.234 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:31.234 -07 000000012 INF: FPGA: Recv ZSGSRD 29593
17-03-18 04:09:31.244 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:31.244 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:31.244 -07 000000437 INF: FPGA: Recv ZSGSRD 29596
17-03-18 04:09:31.254 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:31.254 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:31.254 -07 000000474 INF: FPGA: Recv ZSGSRD 29595
17-03-18 04:09:31.264 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:31.264 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:09:31.264 -07 000000625 INF: FPGA: Recv ZPIEZORD 25041
17-03-18 04:09:31.274 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:31.274 -07 000000610 INF: Z Motor: Piezo is near 33.5 V (nominally 0 to 100 V), expect near 43.5 V, since DAC is at 4.348 V. Piezo Error = -10.0 V.
17-03-18 04:09:31.274 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.4 um, Read 10 ADC samples: Avg = 29594 (-129.7 uncal um), Error = 0.8 uncal um, Median = 29595 (-129.7 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 29591 (-129.6 uncal um), Max = 29597 (-129.7 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 04:09:31.274 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29594, posNoise = 3, negNoise = 3
17-03-18 04:09:31.274 -07 000000610 INF: Z Motor: After move to -0.130442, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:09:31.274 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-18 04:09:31.274 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:09:31.274 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:09:31.274 -07 000000444 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:09:31.274 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:09:31.274 -07 000000590 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:09:31.274 -07 000000611 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:09:31.274 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:09:31.274 -07 000000437 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:09:31.274 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:09:31.274 -07 000000444 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:09:31.274 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 04:09:31.274 -07 000000611 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:09:31.284 -07 000000611 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 04:09:31.284 -07 000000611 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:09:31.284 -07 000000444 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 04:09:31.284 -07 000000444 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:09:31.294 -07 000000444 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 04:09:31.294 -07 000000444 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 04:09:31.294 -07 000000611 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-18 04:09:31.294 -07 000000611 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 04:09:31.294 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 415 415 200 200 28672 150\n [Camera]
17-03-18 04:09:31.494 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:09:31.644 -07 000000437 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:09:31.644 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 120. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1718, R2=1787, Total=3505. Warn if over 250 bubbles per interval.
17-03-18 04:09:31.914 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 607
17-03-18 04:09:31.914 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 607
17-03-18 04:09:31.914 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:09:31.914 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 607
17-03-18 04:09:31.914 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 607
17-03-18 04:09:31.914 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:09:31.914 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:09:31.914 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 04:09:31.914 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:09:31.914 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) start.
17-03-18 04:09:32.104 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28672 800
17-03-18 04:09:32.254 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP turning grn on 950
17-03-18 04:09:32.314 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) end. Duration was 396 ms.
17-03-18 04:09:32.314 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 04:09:32.314 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:09:32.314 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 400 ms.
17-03-18 04:09:32.314 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 04:09:32.314 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:09:32.314 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:09:32.314 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 04:09:32.324 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:09:32.324 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-18 04:09:32.454 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1150
17-03-18 04:09:32.454 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1150
17-03-18 04:09:32.454 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:09:32.454 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:09:32.454 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 2334719600, 0x0, 391868352) start.
17-03-18 04:09:32.454 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1150
17-03-18 04:09:32.454 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1150
17-03-18 04:09:32.454 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:09:32.454 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:09:32.454 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 2370141864, 0x0, 418435064) start.
17-03-18 04:09:32.644 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP 1342
17-03-18 04:09:32.644 -07 000000455 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:09:32.644 -07 000000610 INF: FPGA: 'CAMDBLSNAP 415 415 200 200 28672 150' command took 2 ms to send, 1346 ms to get response, and 1350 ms overall
17-03-18 04:09:32.654 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 04:09:32.654 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 9 at Y-position 65.7138671875, Z-Position -0.130441486134409. ------
17-03-18 04:09:32.654 -07 000000447 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:09:32.654 -07 000000618 INF: Y Motor: MoveYZ optimized starting. Moving Y to 66.5526 mm, moving Z to -0.13688 mm
17-03-18 04:09:32.654 -07 000000618 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:09:32.654 -07 000000437 INF: Y Motor: Entering MoveAbsStepped (target = 106484 steps, sync = True, waitForSettling = True)
17-03-18 04:09:32.654 -07 000000437 INF: Y Motor: Moving to 66.5526 mm, started at 65.7139 mm, delta = 0.8387 mm
17-03-18 04:09:32.654 -07 000000625 INF: Z Motor: Entering MoveAbsStepped (DAC = 29902, sync = True, waitForSettling = False)
17-03-18 04:09:32.654 -07 000000625 INF: Z Motor: Moving to -0.136883 mm, started at -0.130441 mm, distance = -6.44 um
17-03-18 04:09:32.654 -07 000000512 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:09:32.664 -07 000000447 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 04:09:32.664 -07 000000437 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:09:32.664 -07 000000512 INF: FPGA: Recv YRDPOS 134583
17-03-18 04:09:32.674 -07 000000437 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-18 04:09:32.674 -07 000000625 INF: FPGA: Xmit ZDACW 29902\n [Z Motor]
17-03-18 04:09:32.674 -07 000000437 INF: Y Motor: Encoder = 134583 = motor step 105143.0 = 65.7144 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:09:32.674 -07 000000501 INF: FPGA: Recv ZDACW
17-03-18 04:09:32.674 -07 000000437 INF: Y Motor: Last commanded position = 65.7226 mm (105156.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:09:32.674 -07 000000437 INF: Y Motor: Moving 1341 steps-18
17-03-18 04:09:32.684 -07 000000447 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:09:32.684 -07 000000625 INF: FPGA: 'ZDACW 29902' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-18 04:09:32.694 -07 000000437 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:09:32.704 -07 000000625 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:09:32.704 -07 000000012 INF: FPGA: Recv ZDACR 29902
17-03-18 04:09:32.714 -07 000000625 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 04:09:32.714 -07 000000625 INF: Z Motor: MoveAbsStepped took 52 ms (did NOT wait for settling yet))
17-03-18 04:09:32.844 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 2370141864, 0x0, 418435064) end. Duration was 390 ms.
17-03-18 04:09:32.844 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-18 04:09:32.844 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:09:32.854 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 2334719600, 0x0, 391868352) end. Duration was 394 ms.
17-03-18 04:09:32.854 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-18 04:09:32.854 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:09:32.854 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:09:32.854 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 04:09:32.854 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 04:09:32.854 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 04:09:32.884 -07 000000611 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:09:32.884 -07 000000447 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 04:09:33.064 -07 000000455 INF: FPGA: Recv YMVTILE
17-03-18 04:09:33.064 -07 000000437 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 392 ms overall
17-03-18 04:09:33.114 -07 000000437 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:09:33.114 -07 000000579 INF: FPGA: Recv YRDPOS 136272
17-03-18 04:09:33.124 -07 000000437 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 04:09:33.124 -07 000000437 INF: Y Motor: Encoder = 136272 = motor step 106462.5 = 66.5391 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:09:33.124 -07 000000437 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-18 04:09:33.124 -07 000000437 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 393 ms, distance = 0.839 mm, average velocity = 2.134 mm/sec
17-03-18 04:09:34.074 -07 000000437 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:09:34.074 -07 000000474 INF: FPGA: Recv YRDPOS 136272
17-03-18 04:09:34.084 -07 000000437 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:34.084 -07 000000437 INF: Y Motor: Encoder = 136272 = motor step 106462.5 = 66.5391 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:09:34.114 -07 000000437 INF: Y Motor: After move to 66.552605, error = -0.013542, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:09:34.114 -07 000000437 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:09:34.114 -07 000000437 INF: Y Motor: Moved to 66.5391 after 1454 ms (table move)
17-03-18 04:09:34.114 -07 000000618 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136883 mm (DAC = 29902)
17-03-18 04:09:34.114 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:34.114 -07 000000487 INF: FPGA: Recv ZSGSRD 30597
17-03-18 04:09:34.124 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 04:09:34.124 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:34.124 -07 000000579 INF: FPGA: Recv ZSGSRD 30599
17-03-18 04:09:34.134 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:34.134 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:34.134 -07 000000474 INF: FPGA: Recv ZSGSRD 30596
17-03-18 04:09:34.144 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:34.144 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:34.144 -07 000000437 INF: FPGA: Recv ZSGSRD 30596
17-03-18 04:09:34.154 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:34.154 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:34.154 -07 000000487 INF: FPGA: Recv ZSGSRD 30601
17-03-18 04:09:34.164 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:34.164 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:34.164 -07 000000579 INF: FPGA: Recv ZSGSRD 30599
17-03-18 04:09:34.174 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:34.174 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:34.174 -07 000000474 INF: FPGA: Recv ZSGSRD 30597
17-03-18 04:09:34.184 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:34.184 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:34.184 -07 000000474 INF: FPGA: Recv ZSGSRD 30592
17-03-18 04:09:34.194 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 04:09:34.194 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:34.194 -07 000000512 INF: FPGA: Recv ZSGSRD 30592
17-03-18 04:09:34.204 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:34.204 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:34.204 -07 000000611 INF: FPGA: Recv ZSGSRD 30606
17-03-18 04:09:34.214 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:34.214 -07 000000618 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:09:34.214 -07 000000480 INF: FPGA: Recv ZPIEZORD 26361
17-03-18 04:09:34.224 -07 000000618 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:34.224 -07 000000618 INF: Z Motor: Piezo is near 36.3 V (nominally 0 to 100 V), expect near 45.6 V, since DAC is at 4.563 V. Piezo Error = -9.3 V.
17-03-18 04:09:34.224 -07 000000618 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.9 um, Read 10 ADC samples: Avg = 30598 (-136.1 uncal um), Error = 0.8 uncal um, Median = 30597 (-136.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 30592 (-136.1 uncal um), Max = 30606 (-136.1 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 04:09:34.224 -07 000000618 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30598, posNoise = 8, negNoise = 6
17-03-18 04:09:34.224 -07 000000618 INF: Z Motor: After move to -0.136883, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:09:34.224 -07 000000618 INF: Z Motor: Settle wait time = 1457 ms, measure time = 105 ms (allowed 150 ms), total time = 1562 ms
17-03-18 04:09:34.224 -07 000000618 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 04:09:34.274 -07 000000618 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1615 ms
17-03-18 04:09:34.274 -07 000000618 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:09:34.274 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:09:34.274 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:09:34.274 -07 000000579 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:09:34.274 -07 000000455 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:09:34.274 -07 000000625 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:09:34.274 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:09:34.274 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 04:09:34.274 -07 000000625 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:09:34.284 -07 000000625 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 04:09:34.284 -07 000000625 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:09:34.284 -07 000000625 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 04:09:34.284 -07 000000625 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-18 04:09:34.294 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:09:34.334 -07 000000437 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:09:34.634 -07 000000474 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:09:34.634 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:09:34.634 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:09:34.634 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2300786904, 0x0, 559484976) start.
17-03-18 04:09:34.674 -07 000000611 INF: FPGA: Recv @CAMSNAP 383
17-03-18 04:09:34.674 -07 000000561 INF: FPGA: Recv CAMSNAP
17-03-18 04:09:34.674 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 378 ms to get response, and 388 ms overall
17-03-18 04:09:34.754 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2300786904, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 04:09:34.754 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:09:34.754 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 04:09:34.754 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-18 04:09:34.774 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:09:34.774 -07 000000444 INF: Autofocus start
17-03-18 04:09:34.774 -07 000000444 INF: MeasureProfile start
17-03-18 04:09:34.774 -07 000000611 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:09:34.784 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:09:34.784 -07 000000501 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:09:34.794 -07 000000444 INF: MeasureProfile done
17-03-18 04:09:34.794 -07 000000444 INF: X=0  Z correction [um]=-0.02394831
17-03-18 04:09:34.794 -07 000000444 INF: Autofocus finished
17-03-18 04:09:34.984 -07 000000012 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:09:34.984 -07 000000501 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:09:34.984 -07 000000610 INF: ------------ Scan Snapping tile 9 at Y-position 66.5390625, Z-position -0.136891395124737. ----------
17-03-18 04:09:34.984 -07 000000610 INF: Cycle	121	Tile	9	Exposure Settings		A	415	G	200	T	200	C	415
17-03-18 04:09:34.994 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28409, sync = True, waitForSettling = True)
17-03-18 04:09:34.994 -07 000000610 INF: Z Motor: Moving to -0.130048 mm, started at -0.136891 mm, distance = 6.84 um
17-03-18 04:09:34.994 -07 000000610 INF: FPGA: Xmit ZDACW 28409\n [Z Motor]
17-03-18 04:09:34.994 -07 000000480 INF: FPGA: Recv ZDACW
17-03-18 04:09:35.004 -07 000000610 INF: FPGA: 'ZDACW 28409' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:35.004 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:09:35.004 -07 000000590 INF: FPGA: Recv ZDACR 28409
17-03-18 04:09:35.014 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:35.014 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:09:35.164 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:35.164 -07 000000611 INF: FPGA: Recv ZSGSRD 29537
17-03-18 04:09:35.174 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:09:35.174 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:35.174 -07 000000447 INF: FPGA: Recv ZSGSRD 29535
17-03-18 04:09:35.184 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:35.184 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:35.184 -07 000000561 INF: FPGA: Recv ZSGSRD 29529
17-03-18 04:09:35.194 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:35.194 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:35.194 -07 000000012 INF: FPGA: Recv ZSGSRD 29531
17-03-18 04:09:35.204 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:35.204 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:35.204 -07 000000480 INF: FPGA: Recv ZSGSRD 29538
17-03-18 04:09:35.214 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:35.214 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:35.214 -07 000000437 INF: FPGA: Recv ZSGSRD 29534
17-03-18 04:09:35.224 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:35.224 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:35.224 -07 000000487 INF: FPGA: Recv ZSGSRD 29535
17-03-18 04:09:35.234 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:35.234 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:35.234 -07 000000512 INF: FPGA: Recv ZSGSRD 29532
17-03-18 04:09:35.244 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:35.244 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:35.244 -07 000000480 INF: FPGA: Recv ZSGSRD 29537
17-03-18 04:09:35.254 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:35.254 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:35.254 -07 000000437 INF: FPGA: Recv ZSGSRD 29533
17-03-18 04:09:35.264 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:35.264 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:09:35.264 -07 000000487 INF: FPGA: Recv ZPIEZORD 24978
17-03-18 04:09:35.274 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:35.274 -07 000000610 INF: Z Motor: Piezo is near 33.4 V (nominally 0 to 100 V), expect near 43.3 V, since DAC is at 4.335 V. Piezo Error = -10.0 V.
17-03-18 04:09:35.274 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.0 um, Read 10 ADC samples: Avg = 29534 (-129.3 uncal um), Error = 0.8 uncal um, Median = 29534 (-129.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29529 (-129.2 uncal um), Max = 29538 (-129.3 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 04:09:35.274 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29534, posNoise = 4, negNoise = 5
17-03-18 04:09:35.274 -07 000000610 INF: Z Motor: After move to -0.130048, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:09:35.274 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 04:09:35.274 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:09:35.274 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:09:35.274 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:09:35.274 -07 000000447 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:09:35.274 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:09:35.274 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:09:35.274 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:09:35.274 -07 000000474 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:09:35.274 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 04:09:35.274 -07 000000447 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:09:35.274 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-18 04:09:35.274 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:09:35.274 -07 000000447 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 04:09:35.274 -07 000000447 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:09:35.284 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 04:09:35.284 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:09:35.294 -07 000000447 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-18 04:09:35.294 -07 000000447 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 04:09:35.294 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-18 04:09:35.294 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 17 ms.
17-03-18 04:09:35.294 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 415 415 200 200 28586 150\n [Camera]
17-03-18 04:09:35.494 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:09:35.784 -07 000000487 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 121, FrontChillerTemperature: 3.969015,
17-03-18 04:09:35.914 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 607
17-03-18 04:09:35.914 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 607
17-03-18 04:09:35.914 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:09:35.914 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:09:35.914 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 04:09:35.914 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 607
17-03-18 04:09:35.914 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 607
17-03-18 04:09:35.914 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:09:35.914 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:09:35.914 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start.
17-03-18 04:09:36.104 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28586 800
17-03-18 04:09:36.254 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP turning grn on 951
17-03-18 04:09:36.304 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 385 ms.
17-03-18 04:09:36.304 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 387 ms.
17-03-18 04:09:36.304 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-18 04:09:36.304 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:09:36.304 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-18 04:09:36.304 -07 000000444 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:09:36.304 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:09:36.304 -07 000000444 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 04:09:36.304 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 04:09:36.314 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 04:09:36.454 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1151
17-03-18 04:09:36.454 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1151
17-03-18 04:09:36.454 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:09:36.454 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:09:36.454 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) start.
17-03-18 04:09:36.454 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1152
17-03-18 04:09:36.454 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1152
17-03-18 04:09:36.454 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:09:36.454 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:09:36.454 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 04:09:36.644 -07 000000487 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:09:36.644 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 120. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1718, R2=1787, Total=3505. Warn if over 250 bubbles per interval.
17-03-18 04:09:36.644 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP 1342
17-03-18 04:09:36.644 -07 000000487 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:09:36.644 -07 000000610 INF: FPGA: 'CAMDBLSNAP 415 415 200 200 28586 150' command took 2 ms to send, 1345 ms to get response, and 1349 ms overall
17-03-18 04:09:36.644 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 04:09:36.644 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 10 at Y-position 66.5390625, Z-Position -0.130056033405903. ------
17-03-18 04:09:36.654 -07 000000608 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:09:36.654 -07 000000611 INF: Y Motor: MoveYZ optimized starting. Moving Y to 67.3826 mm, moving Z to -0.13684 mm
17-03-18 04:09:36.654 -07 000000611 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:09:36.654 -07 000000487 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:09:36.654 -07 000000012 INF: Y Motor: Entering MoveAbsStepped (target = 107812 steps, sync = True, waitForSettling = True)
17-03-18 04:09:36.654 -07 000000012 INF: Y Motor: Moving to 67.3826 mm, started at 66.5391 mm, delta = 0.8435 mm
17-03-18 04:09:36.654 -07 000000501 INF: Z Motor: Entering MoveAbsStepped (DAC = 29893, sync = True, waitForSettling = False)
17-03-18 04:09:36.654 -07 000000501 INF: Z Motor: Moving to -0.136841 mm, started at -0.130056 mm, distance = -6.79 um
17-03-18 04:09:36.664 -07 000000608 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:36.664 -07 000000501 INF: FPGA: Xmit ZDACW 29893\n [Z Motor]
17-03-18 04:09:36.664 -07 000000561 INF: FPGA: Recv ZDACW
17-03-18 04:09:36.674 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:09:36.674 -07 000000501 INF: FPGA: 'ZDACW 29893' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-18 04:09:36.674 -07 000000437 INF: FPGA: Recv YRDPOS 136272
17-03-18 04:09:36.684 -07 000000608 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:09:36.684 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-18 04:09:36.684 -07 000000012 INF: Y Motor: Encoder = 136272 = motor step 106462.5 = 66.5391 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:09:36.684 -07 000000012 INF: Y Motor: Last commanded position = 66.5526 mm (106484.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:09:36.684 -07 000000012 INF: Y Motor: Moving 1350 steps-28
17-03-18 04:09:36.694 -07 000000501 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:09:36.694 -07 000000590 INF: FPGA: Recv ZDACR 29893
17-03-18 04:09:36.704 -07 000000012 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:09:36.704 -07 000000501 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 04:09:36.704 -07 000000501 INF: Z Motor: MoveAbsStepped took 44 ms (did NOT wait for settling yet))
17-03-18 04:09:36.854 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) end. Duration was 400 ms.
17-03-18 04:09:36.854 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 04:09:36.854 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:09:36.854 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 400 ms.
17-03-18 04:09:36.854 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 04:09:36.854 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:09:36.864 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:09:36.864 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 04:09:36.864 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms.
17-03-18 04:09:36.874 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-18 04:09:36.884 -07 000000625 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:09:36.884 -07 000000608 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 04:09:37.074 -07 000000444 INF: FPGA: Recv YMVTILE
17-03-18 04:09:37.074 -07 000000012 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 04:09:37.124 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:09:37.124 -07 000000455 INF: FPGA: Recv YRDPOS 137977
17-03-18 04:09:37.134 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 04:09:37.134 -07 000000012 INF: Y Motor: Encoder = 137977 = motor step 107794.5 = 67.3716 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:09:37.134 -07 000000012 INF: Y Motor: Position error before settling (table move) = -23 encoder counts (-0.011 mm)
17-03-18 04:09:37.134 -07 000000012 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.844 mm, average velocity = 2.125 mm/sec
17-03-18 04:09:38.084 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:09:38.084 -07 000000579 INF: FPGA: Recv YRDPOS 137978
17-03-18 04:09:38.094 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:09:38.094 -07 000000012 INF: Y Motor: Encoder = 137978 = motor step 107795.3 = 67.3721 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:09:38.124 -07 000000012 INF: Y Motor: After move to 67.382607, error = -0.010536, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:09:38.124 -07 000000012 INF: Y Motor: Position error after settling (table move) = -22 encoder counts (-0.011 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 04:09:38.124 -07 000000012 INF: Y Motor: Moved to 67.3721 after 1464 ms (table move)
17-03-18 04:09:38.124 -07 000000611 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136841 mm (DAC = 29893)
17-03-18 04:09:38.124 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:38.124 -07 000000625 INF: FPGA: Recv ZSGSRD 30601
17-03-18 04:09:38.134 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:09:38.134 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:38.134 -07 000000012 INF: FPGA: Recv ZSGSRD 30589
17-03-18 04:09:38.144 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:38.144 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:38.144 -07 000000512 INF: FPGA: Recv ZSGSRD 30589
17-03-18 04:09:38.154 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:38.154 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:38.154 -07 000000444 INF: FPGA: Recv ZSGSRD 30592
17-03-18 04:09:38.164 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:38.164 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:38.164 -07 000000444 INF: FPGA: Recv ZSGSRD 30590
17-03-18 04:09:38.174 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:38.174 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:38.174 -07 000000455 INF: FPGA: Recv ZSGSRD 30590
17-03-18 04:09:38.184 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:38.184 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:38.184 -07 000000447 INF: FPGA: Recv ZSGSRD 30589
17-03-18 04:09:38.194 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:38.194 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:38.194 -07 000000444 INF: FPGA: Recv ZSGSRD 30588
17-03-18 04:09:38.204 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:38.204 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:38.204 -07 000000474 INF: FPGA: Recv ZSGSRD 30592
17-03-18 04:09:38.214 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:38.214 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:38.214 -07 000000437 INF: FPGA: Recv ZSGSRD 30593
17-03-18 04:09:38.224 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:38.224 -07 000000611 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:09:38.224 -07 000000512 INF: FPGA: Recv ZPIEZORD 26356
17-03-18 04:09:38.234 -07 000000611 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:38.234 -07 000000611 INF: Z Motor: Piezo is near 36.3 V (nominally 0 to 100 V), expect near 45.6 V, since DAC is at 4.561 V. Piezo Error = -9.3 V.
17-03-18 04:09:38.234 -07 000000611 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.8 um, Read 10 ADC samples: Avg = 30591 (-136.1 uncal um), Error = 0.8 uncal um, Median = 30590 (-136.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 30588 (-136.0 uncal um), Max = 30601 (-136.1 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 04:09:38.234 -07 000000611 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30591, posNoise = 10, negNoise = 3
17-03-18 04:09:38.234 -07 000000611 INF: Z Motor: After move to -0.136841, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:09:38.234 -07 000000611 INF: Z Motor: Settle wait time = 1468 ms, measure time = 106 ms (allowed 150 ms), total time = 1574 ms
17-03-18 04:09:38.234 -07 000000611 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-18 04:09:38.284 -07 000000611 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1629 ms
17-03-18 04:09:38.284 -07 000000611 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:09:38.284 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:09:38.284 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:09:38.284 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:09:38.284 -07 000000455 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:09:38.284 -07 000000487 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:09:38.284 -07 000000487 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:09:38.284 -07 000000487 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:09:38.284 -07 000000487 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:09:38.294 -07 000000487 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 04:09:38.294 -07 000000487 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:09:38.304 -07 000000487 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-18 04:09:38.304 -07 000000487 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms.
17-03-18 04:09:38.304 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:09:38.354 -07 000000611 INF: FPGA: Recv @CAMSNAP turning led on 43
17-03-18 04:09:38.654 -07 000000487 INF: FPGA: Recv @CAMSNAP img rdy 343
17-03-18 04:09:38.654 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 343
17-03-18 04:09:38.654 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:09:38.654 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2673282832, 0x0, 559484976) start.
17-03-18 04:09:38.694 -07 000000480 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:09:38.694 -07 000000444 INF: FPGA: Recv CAMSNAP
17-03-18 04:09:38.694 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 381 ms to get response, and 384 ms overall
17-03-18 04:09:38.774 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2673282832, 0x0, 559484976) end. Duration was 124 ms.
17-03-18 04:09:38.774 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:09:38.784 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 04:09:38.784 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 126 ms.
17-03-18 04:09:38.794 -07 000000618 INF: Autofocus start
17-03-18 04:09:38.794 -07 000000618 INF: MeasureProfile start
17-03-18 04:09:38.794 -07 000000561 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:09:38.794 -07 000000437 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:09:38.804 -07 000000561 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 04:09:38.804 -07 000000561 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:09:38.814 -07 000000618 INF: MeasureProfile done
17-03-18 04:09:38.814 -07 000000618 INF: X=16  Z correction [um]=0.0530179
17-03-18 04:09:38.814 -07 000000618 INF: Autofocus finished
17-03-18 04:09:39.004 -07 000000501 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:09:39.004 -07 000000561 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:09:39.004 -07 000000610 INF: ------------ Scan Snapping tile 10 at Y-position 67.3720703125, Z-position -0.136846425639744. ----------
17-03-18 04:09:39.004 -07 000000610 INF: Cycle	121	Tile	10	Exposure Settings		A	415	G	200	T	200	C	415
17-03-18 04:09:39.014 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28417, sync = True, waitForSettling = True)
17-03-18 04:09:39.014 -07 000000610 INF: Z Motor: Moving to -0.130085 mm, started at -0.136846 mm, distance = 6.76 um
17-03-18 04:09:39.014 -07 000000610 INF: FPGA: Xmit ZDACW 28417\n [Z Motor]
17-03-18 04:09:39.014 -07 000000444 INF: FPGA: Recv ZDACW
17-03-18 04:09:39.024 -07 000000610 INF: FPGA: 'ZDACW 28417' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 04:09:39.024 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:09:39.024 -07 000000512 INF: FPGA: Recv ZDACR 28417
17-03-18 04:09:39.034 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:39.034 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:09:39.184 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:39.184 -07 000000447 INF: FPGA: Recv ZSGSRD 29534
17-03-18 04:09:39.194 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:39.194 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:39.194 -07 000000561 INF: FPGA: Recv ZSGSRD 29540
17-03-18 04:09:39.204 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:39.204 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:39.204 -07 000000611 INF: FPGA: Recv ZSGSRD 29539
17-03-18 04:09:39.214 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:39.214 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:39.214 -07 000000487 INF: FPGA: Recv ZSGSRD 29536
17-03-18 04:09:39.224 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:39.224 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:39.224 -07 000000608 INF: FPGA: Recv ZSGSRD 29538
17-03-18 04:09:39.234 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:39.234 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:39.234 -07 000000474 INF: FPGA: Recv ZSGSRD 29534
17-03-18 04:09:39.244 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:39.244 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:39.244 -07 000000611 INF: FPGA: Recv ZSGSRD 29542
17-03-18 04:09:39.254 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:39.254 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:39.254 -07 000000561 INF: FPGA: Recv ZSGSRD 29539
17-03-18 04:09:39.264 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:39.264 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:39.264 -07 000000512 INF: FPGA: Recv ZSGSRD 29536
17-03-18 04:09:39.274 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:39.274 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:39.274 -07 000000455 INF: FPGA: Recv ZSGSRD 29540
17-03-18 04:09:39.284 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:39.284 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:09:39.284 -07 000000012 INF: FPGA: Recv ZPIEZORD 25000
17-03-18 04:09:39.294 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:39.294 -07 000000610 INF: Z Motor: Piezo is near 33.4 V (nominally 0 to 100 V), expect near 43.4 V, since DAC is at 4.336 V. Piezo Error = -10.0 V.
17-03-18 04:09:39.294 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.1 um, Read 10 ADC samples: Avg = 29538 (-129.3 uncal um), Error = 0.8 uncal um, Median = 29538 (-129.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 29534 (-129.3 uncal um), Max = 29542 (-129.3 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 04:09:39.294 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29538, posNoise = 4, negNoise = 4
17-03-18 04:09:39.294 -07 000000610 INF: Z Motor: After move to -0.130085, error = 0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:09:39.294 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 04:09:39.294 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:09:39.294 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:09:39.294 -07 000000611 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:09:39.294 -07 000000590 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:09:39.294 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:09:39.294 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:09:39.294 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:09:39.294 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:09:39.294 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:09:39.294 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:09:39.294 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:09:39.294 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:09:39.304 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 04:09:39.304 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:09:39.304 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-18 04:09:39.304 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:09:39.314 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 04:09:39.314 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 04:09:39.314 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 04:09:39.314 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 04:09:39.314 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 415 415 200 200 28594 150\n [Camera]
17-03-18 04:09:39.514 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:09:39.924 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 607
17-03-18 04:09:39.924 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 607
17-03-18 04:09:39.934 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:09:39.934 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:09:39.934 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-18 04:09:39.934 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 607
17-03-18 04:09:39.934 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 607
17-03-18 04:09:39.934 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:09:39.934 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:09:39.934 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-18 04:09:40.124 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28594 800
17-03-18 04:09:40.274 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP turning grn on 950
17-03-18 04:09:40.304 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 373 ms.
17-03-18 04:09:40.304 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-18 04:09:40.304 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:09:40.314 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:09:40.314 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 384 ms.
17-03-18 04:09:40.314 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-18 04:09:40.314 -07 000000625 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:09:40.314 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-18 04:09:40.314 -07 000000625 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:09:40.314 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-18 04:09:40.474 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1150
17-03-18 04:09:40.474 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1150
17-03-18 04:09:40.474 -07 000000437 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:09:40.474 -07 000000437 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:09:40.474 -07 000000437 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-18 04:09:40.474 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1150
17-03-18 04:09:40.474 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1150
17-03-18 04:09:40.474 -07 000000487 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:09:40.474 -07 000000487 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:09:40.474 -07 000000487 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-18 04:09:40.664 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP 1343
17-03-18 04:09:40.664 -07 000000501 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:09:40.664 -07 000000610 INF: FPGA: 'CAMDBLSNAP 415 415 200 200 28594 150' command took 2 ms to send, 1344 ms to get response, and 1350 ms overall
17-03-18 04:09:40.664 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 04:09:40.664 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 11 at Y-position 67.3720703125, Z-Position -0.13008173025447. ------
17-03-18 04:09:40.664 -07 000000625 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:09:40.664 -07 000000590 INF: Y Motor: MoveYZ optimized starting. Moving Y to 68.2126 mm, moving Z to -0.13647 mm
17-03-18 04:09:40.664 -07 000000590 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:09:40.674 -07 000000455 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:09:40.674 -07 000000625 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 04:09:40.674 -07 000000480 INF: Z Motor: Entering MoveAbsStepped (DAC = 29812, sync = True, waitForSettling = False)
17-03-18 04:09:40.674 -07 000000480 INF: Z Motor: Moving to -0.136471 mm, started at -0.130082 mm, distance = -6.39 um
17-03-18 04:09:40.674 -07 000000444 INF: Y Motor: Entering MoveAbsStepped (target = 109140 steps, sync = True, waitForSettling = True)
17-03-18 04:09:40.674 -07 000000444 INF: Y Motor: Moving to 68.2126 mm, started at 67.3721 mm, delta = 0.8405 mm
17-03-18 04:09:40.674 -07 000000625 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:09:40.684 -07 000000480 INF: FPGA: Xmit ZDACW 29812\n [Z Motor]
17-03-18 04:09:40.684 -07 000000455 INF: FPGA: Recv ZDACW
17-03-18 04:09:40.694 -07 000000444 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:09:40.694 -07 000000480 INF: FPGA: 'ZDACW 29812' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-18 04:09:40.694 -07 000000455 INF: FPGA: Recv YRDPOS 137978
17-03-18 04:09:40.704 -07 000000444 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-18 04:09:40.704 -07 000000444 INF: Y Motor: Encoder = 137978 = motor step 107795.3 = 67.3721 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:09:40.704 -07 000000444 INF: Y Motor: Last commanded position = 67.3826 mm (107812.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:09:40.704 -07 000000444 INF: Y Motor: Moving 1345 steps-23
17-03-18 04:09:40.704 -07 000000480 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:09:40.704 -07 000000561 INF: FPGA: Recv ZDACR 29812
17-03-18 04:09:40.714 -07 000000480 INF: FPGA: 'ZDACR' command took 2 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 04:09:40.714 -07 000000480 INF: Z Motor: MoveAbsStepped took 37 ms (did NOT wait for settling yet))
17-03-18 04:09:40.714 -07 000000444 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:09:40.864 -07 000000437 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 386 ms.
17-03-18 04:09:40.864 -07 000000437 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-18 04:09:40.864 -07 000000437 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:09:40.864 -07 000000487 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 385 ms.
17-03-18 04:09:40.864 -07 000000487 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-18 04:09:40.864 -07 000000487 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:09:40.864 -07 000000487 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:09:40.864 -07 000000437 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 04:09:40.864 -07 000000437 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-18 04:09:40.874 -07 000000487 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 04:09:40.874 -07 000000561 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:09:40.874 -07 000000625 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 199 ms to get response, and 206 ms overall
17-03-18 04:09:41.084 -07 000000579 INF: FPGA: Recv YMVTILE
17-03-18 04:09:41.084 -07 000000444 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 385 ms overall
17-03-18 04:09:41.144 -07 000000608 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 121, FrontChillerTemperature: 3.983999,
17-03-18 04:09:41.154 -07 000000444 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:09:41.154 -07 000000474 INF: FPGA: Recv YRDPOS 139684
17-03-18 04:09:41.164 -07 000000444 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 21 ms overall
17-03-18 04:09:41.164 -07 000000444 INF: Y Motor: Encoder = 139684 = motor step 109128.1 = 68.2051 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:09:41.164 -07 000000444 INF: Y Motor: Position error before settling (table move) = -15 encoder counts (-0.007 mm)
17-03-18 04:09:41.164 -07 000000444 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.841 mm, average velocity = 2.166 mm/sec
17-03-18 04:09:41.644 -07 000000608 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:09:41.644 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 120. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1718, R2=1787, Total=3505. Warn if over 250 bubbles per interval.
17-03-18 04:09:42.114 -07 000000444 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:09:42.114 -07 000000501 INF: FPGA: Recv YRDPOS 139684
17-03-18 04:09:42.124 -07 000000444 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:09:42.124 -07 000000444 INF: Y Motor: Encoder = 139684 = motor step 109128.1 = 68.2051 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:09:42.144 -07 000000444 INF: Y Motor: After move to 68.212608, error = -0.007530, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:09:42.144 -07 000000444 INF: Y Motor: Position error after settling (table move) = -15 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:09:42.144 -07 000000444 INF: Y Motor: Moved to 68.2051 after 1475 ms (table move)
17-03-18 04:09:42.154 -07 000000590 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136471 mm (DAC = 29812)
17-03-18 04:09:42.154 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:42.154 -07 000000611 INF: FPGA: Recv ZSGSRD 30535
17-03-18 04:09:42.164 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 04:09:42.164 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:42.164 -07 000000512 INF: FPGA: Recv ZSGSRD 30536
17-03-18 04:09:42.174 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:42.174 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:42.174 -07 000000012 INF: FPGA: Recv ZSGSRD 30528
17-03-18 04:09:42.184 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:42.184 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:42.184 -07 000000455 INF: FPGA: Recv ZSGSRD 30526
17-03-18 04:09:42.194 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:42.194 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:42.194 -07 000000444 INF: FPGA: Recv ZSGSRD 30527
17-03-18 04:09:42.204 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:42.204 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:42.204 -07 000000579 INF: FPGA: Recv ZSGSRD 30530
17-03-18 04:09:42.214 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:42.214 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:42.214 -07 000000512 INF: FPGA: Recv ZSGSRD 30533
17-03-18 04:09:42.224 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:42.224 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:42.224 -07 000000474 INF: FPGA: Recv ZSGSRD 30538
17-03-18 04:09:42.234 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:42.234 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:42.234 -07 000000611 INF: FPGA: Recv ZSGSRD 30533
17-03-18 04:09:42.244 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:42.244 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:42.244 -07 000000625 INF: FPGA: Recv ZSGSRD 30541
17-03-18 04:09:42.254 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:42.254 -07 000000590 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:09:42.254 -07 000000455 INF: FPGA: Recv ZPIEZORD 26294
17-03-18 04:09:42.264 -07 000000590 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:42.264 -07 000000590 INF: Z Motor: Piezo is near 36.2 V (nominally 0 to 100 V), expect near 45.5 V, since DAC is at 4.549 V. Piezo Error = -9.3 V.
17-03-18 04:09:42.264 -07 000000590 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.5 um, Read 10 ADC samples: Avg = 30533 (-135.7 uncal um), Error = 0.8 uncal um, Median = 30533 (-135.7 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 30526 (-135.6 uncal um), Max = 30541 (-135.7 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 04:09:42.264 -07 000000590 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30533, posNoise = 8, negNoise = 7
17-03-18 04:09:42.264 -07 000000590 INF: Z Motor: After move to -0.136471, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:09:42.264 -07 000000590 INF: Z Motor: Settle wait time = 1479 ms, measure time = 108 ms (allowed 150 ms), total time = 1587 ms
17-03-18 04:09:42.264 -07 000000590 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-18 04:09:42.314 -07 000000590 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1640 ms
17-03-18 04:09:42.314 -07 000000590 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:09:42.314 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:09:42.314 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:09:42.314 -07 000000579 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:09:42.314 -07 000000625 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:09:42.314 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:09:42.314 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:09:42.314 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:09:42.314 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:09:42.324 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 04:09:42.324 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:09:42.324 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 8 ms.
17-03-18 04:09:42.324 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 13 ms.
17-03-18 04:09:42.334 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:09:42.374 -07 000000512 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:09:42.674 -07 000000444 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:09:42.674 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:09:42.674 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:09:42.674 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1495437528, 0x0, 559484976) start.
17-03-18 04:09:42.714 -07 000000480 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:09:42.714 -07 000000447 INF: FPGA: Recv CAMSNAP
17-03-18 04:09:42.714 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 04:09:42.794 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1495437528, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 04:09:42.794 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:09:42.794 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 04:09:42.794 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 04:09:42.814 -07 000000608 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:09:42.814 -07 000000474 INF: Autofocus start
17-03-18 04:09:42.814 -07 000000474 INF: MeasureProfile start
17-03-18 04:09:42.814 -07 000000625 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:09:42.824 -07 000000608 INF: FPGA: 'FOCMRRCUR 80' command took 1 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:09:42.824 -07 000000608 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:09:42.824 -07 000000474 INF: MeasureProfile done
17-03-18 04:09:42.824 -07 000000474 INF: X=16  Z correction [um]=0.0530179
17-03-18 04:09:42.824 -07 000000474 INF: Autofocus finished
17-03-18 04:09:43.024 -07 000000611 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:09:43.024 -07 000000608 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:09:43.024 -07 000000610 INF: ------------ Scan Snapping tile 11 at Y-position 68.205078125, Z-position -0.136473821335522. ----------
17-03-18 04:09:43.024 -07 000000610 INF: Cycle	121	Tile	11	Exposure Settings		A	415	G	200	T	200	C	415
17-03-18 04:09:43.034 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28337, sync = True, waitForSettling = True)
17-03-18 04:09:43.034 -07 000000610 INF: Z Motor: Moving to -0.129718 mm, started at -0.136474 mm, distance = 6.76 um
17-03-18 04:09:43.034 -07 000000610 INF: FPGA: Xmit ZDACW 28337\n [Z Motor]
17-03-18 04:09:43.034 -07 000000437 INF: FPGA: Recv ZDACW
17-03-18 04:09:43.044 -07 000000610 INF: FPGA: 'ZDACW 28337' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 04:09:43.044 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:09:43.044 -07 000000501 INF: FPGA: Recv ZDACR 28337
17-03-18 04:09:43.054 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:43.054 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:09:43.204 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:43.204 -07 000000455 INF: FPGA: Recv ZSGSRD 29479
17-03-18 04:09:43.214 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:09:43.214 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:43.214 -07 000000579 INF: FPGA: Recv ZSGSRD 29480
17-03-18 04:09:43.224 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:43.224 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:43.224 -07 000000487 INF: FPGA: Recv ZSGSRD 29486
17-03-18 04:09:43.234 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:43.234 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:43.234 -07 000000480 INF: FPGA: Recv ZSGSRD 29475
17-03-18 04:09:43.244 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:43.244 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:43.244 -07 000000501 INF: FPGA: Recv ZSGSRD 29483
17-03-18 04:09:43.254 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:43.254 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:43.254 -07 000000455 INF: FPGA: Recv ZSGSRD 29475
17-03-18 04:09:43.264 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:43.264 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:43.264 -07 000000579 INF: FPGA: Recv ZSGSRD 29477
17-03-18 04:09:43.274 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:43.274 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:43.274 -07 000000487 INF: FPGA: Recv ZSGSRD 29483
17-03-18 04:09:43.284 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:43.284 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:43.284 -07 000000480 INF: FPGA: Recv ZSGSRD 29481
17-03-18 04:09:43.294 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:43.294 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:43.294 -07 000000012 INF: FPGA: Recv ZSGSRD 29484
17-03-18 04:09:43.304 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:43.304 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:09:43.304 -07 000000455 INF: FPGA: Recv ZPIEZORD 24952
17-03-18 04:09:43.314 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:43.314 -07 000000610 INF: Z Motor: Piezo is near 33.3 V (nominally 0 to 100 V), expect near 43.2 V, since DAC is at 4.324 V. Piezo Error = -9.9 V.
17-03-18 04:09:43.314 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.7 um, Read 10 ADC samples: Avg = 29480 (-128.9 uncal um), Error = 0.8 uncal um, Median = 29480 (-128.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29475 (-128.9 uncal um), Max = 29486 (-129.0 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 04:09:43.314 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29480, posNoise = 6, negNoise = 5
17-03-18 04:09:43.314 -07 000000610 INF: Z Motor: After move to -0.129718, error = 0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:09:43.314 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-18 04:09:43.314 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:09:43.314 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:09:43.314 -07 000000487 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:09:43.314 -07 000000608 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:09:43.314 -07 000000012 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:09:43.314 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:09:43.314 -07 000000625 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:09:43.314 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 04:09:43.314 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:09:43.314 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:09:43.314 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:09:43.314 -07 000000625 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:09:43.324 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 04:09:43.324 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:09:43.324 -07 000000625 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 04:09:43.324 -07 000000625 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:09:43.334 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 04:09:43.334 -07 000000012 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 04:09:43.334 -07 000000625 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 04:09:43.334 -07 000000625 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 17 ms.
17-03-18 04:09:43.334 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 415 415 200 200 28513 150\n [Camera]
17-03-18 04:09:43.534 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:09:43.954 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 607
17-03-18 04:09:43.954 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 607
17-03-18 04:09:43.954 -07 000000437 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:09:43.954 -07 000000437 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:09:43.954 -07 000000437 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-18 04:09:43.954 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 607
17-03-18 04:09:43.954 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 607
17-03-18 04:09:43.954 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:09:43.954 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:09:43.954 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-18 04:09:44.144 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28513 800
17-03-18 04:09:44.294 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning grn on 950
17-03-18 04:09:44.334 -07 000000437 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 383 ms.
17-03-18 04:09:44.334 -07 000000437 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-18 04:09:44.334 -07 000000437 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:09:44.334 -07 000000437 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:09:44.334 -07 000000437 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-18 04:09:44.334 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 382 ms.
17-03-18 04:09:44.334 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-18 04:09:44.334 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:09:44.344 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:09:44.354 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-18 04:09:44.494 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1150
17-03-18 04:09:44.494 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1150
17-03-18 04:09:44.494 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:09:44.494 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:09:44.494 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) start.
17-03-18 04:09:44.494 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1150
17-03-18 04:09:44.494 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1150
17-03-18 04:09:44.494 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:09:44.494 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:09:44.494 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 2486767776, 0x0, 418435064) start.
17-03-18 04:09:44.684 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP 1342
17-03-18 04:09:44.684 -07 000000512 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:09:44.684 -07 000000610 INF: FPGA: 'CAMDBLSNAP 415 415 200 200 28513 150' command took 2 ms to send, 1345 ms to get response, and 1350 ms overall
17-03-18 04:09:44.684 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 04:09:44.684 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 12 at Y-position 68.205078125, Z-Position -0.129709125950248. ------
17-03-18 04:09:44.694 -07 000000608 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.0426 mm, moving Z to -0.13641 mm
17-03-18 04:09:44.694 -07 000000608 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:09:44.694 -07 000000579 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:09:44.694 -07 000000447 INF: Y Motor: Entering MoveAbsStepped (target = 110468 steps, sync = True, waitForSettling = True)
17-03-18 04:09:44.694 -07 000000447 INF: Y Motor: Moving to 69.0426 mm, started at 68.2051 mm, delta = 0.8375 mm
17-03-18 04:09:44.694 -07 000000474 INF: Z Motor: Entering MoveAbsStepped (DAC = 29798, sync = True, waitForSettling = False)
17-03-18 04:09:44.694 -07 000000474 INF: Z Motor: Moving to -0.136407 mm, started at -0.129709 mm, distance = -6.70 um
17-03-18 04:09:44.694 -07 000000512 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:09:44.704 -07 000000579 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 04:09:44.704 -07 000000474 INF: FPGA: Xmit ZDACW 29798\n [Z Motor]
17-03-18 04:09:44.704 -07 000000512 INF: FPGA: Recv ZDACW
17-03-18 04:09:44.714 -07 000000447 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:09:44.714 -07 000000474 INF: FPGA: 'ZDACW 29798' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-18 04:09:44.714 -07 000000501 INF: FPGA: Recv YRDPOS 139685
17-03-18 04:09:44.724 -07 000000579 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:09:44.724 -07 000000447 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-18 04:09:44.724 -07 000000447 INF: Y Motor: Encoder = 139685 = motor step 109128.9 = 68.2056 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:09:44.724 -07 000000447 INF: Y Motor: Last commanded position = 68.2126 mm (109140.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:09:44.724 -07 000000447 INF: Y Motor: Moving 1339 steps-15
17-03-18 04:09:44.734 -07 000000474 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:09:44.734 -07 000000012 INF: FPGA: Recv ZDACR 29798
17-03-18 04:09:44.744 -07 000000474 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 04:09:44.744 -07 000000474 INF: Z Motor: MoveAbsStepped took 45 ms (did NOT wait for settling yet))
17-03-18 04:09:44.744 -07 000000447 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:09:44.884 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 2486767776, 0x0, 418435064) end. Duration was 387 ms.
17-03-18 04:09:44.884 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-18 04:09:44.884 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:09:44.884 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) end. Duration was 393 ms.
17-03-18 04:09:44.884 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-18 04:09:44.884 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:09:44.884 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:09:44.894 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 04:09:44.894 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 04:09:44.894 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 04:09:44.924 -07 000000455 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:09:44.924 -07 000000579 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 04:09:45.114 -07 000000611 INF: FPGA: Recv YMVTILE
17-03-18 04:09:45.114 -07 000000447 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 393 ms overall
17-03-18 04:09:45.164 -07 000000447 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:09:45.164 -07 000000480 INF: FPGA: Recv YRDPOS 141368
17-03-18 04:09:45.174 -07 000000447 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 04:09:45.174 -07 000000447 INF: Y Motor: Encoder = 141368 = motor step 110443.8 = 69.0273 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:09:45.174 -07 000000447 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-18 04:09:45.174 -07 000000447 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 393 ms, distance = 0.838 mm, average velocity = 2.131 mm/sec
17-03-18 04:09:46.124 -07 000000447 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:09:46.124 -07 000000444 INF: FPGA: Recv YRDPOS 141368
17-03-18 04:09:46.134 -07 000000447 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:09:46.134 -07 000000447 INF: Y Motor: Encoder = 141368 = motor step 110443.8 = 69.0273 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:09:46.164 -07 000000447 INF: Y Motor: After move to 69.042610, error = -0.015266, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:09:46.164 -07 000000447 INF: Y Motor: Position error after settling (table move) = -31 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:09:46.164 -07 000000447 INF: Y Motor: Moved to 69.0273 after 1466 ms (table move)
17-03-18 04:09:46.164 -07 000000608 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136407 mm (DAC = 29798)
17-03-18 04:09:46.164 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:46.164 -07 000000480 INF: FPGA: Recv ZSGSRD 30527
17-03-18 04:09:46.174 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 04:09:46.174 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:46.174 -07 000000501 INF: FPGA: Recv ZSGSRD 30522
17-03-18 04:09:46.184 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:46.184 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:46.184 -07 000000447 INF: FPGA: Recv ZSGSRD 30523
17-03-18 04:09:46.194 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:46.204 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:46.204 -07 000000625 INF: FPGA: Recv ZSGSRD 30522
17-03-18 04:09:46.214 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 04:09:46.214 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:46.214 -07 000000611 INF: FPGA: Recv ZSGSRD 30528
17-03-18 04:09:46.224 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:46.224 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:46.224 -07 000000501 INF: FPGA: Recv ZSGSRD 30515
17-03-18 04:09:46.234 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:46.234 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:46.234 -07 000000474 INF: FPGA: Recv ZSGSRD 30520
17-03-18 04:09:46.244 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:46.244 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:46.244 -07 000000012 INF: FPGA: Recv ZSGSRD 30528
17-03-18 04:09:46.254 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:46.254 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:46.254 -07 000000455 INF: FPGA: Recv ZSGSRD 30515
17-03-18 04:09:46.264 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:46.264 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:46.264 -07 000000480 INF: FPGA: Recv ZSGSRD 30525
17-03-18 04:09:46.274 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 04:09:46.274 -07 000000608 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:09:46.274 -07 000000618 INF: FPGA: Recv ZPIEZORD 26316
17-03-18 04:09:46.284 -07 000000608 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:46.284 -07 000000608 INF: Z Motor: Piezo is near 36.2 V (nominally 0 to 100 V), expect near 45.5 V, since DAC is at 4.547 V. Piezo Error = -9.3 V.
17-03-18 04:09:46.284 -07 000000608 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.4 um, Read 10 ADC samples: Avg = 30522 (-135.6 uncal um), Error = 0.8 uncal um, Median = 30522 (-135.6 uncal um), StdDev = 5 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 30515 (-135.6 uncal um), Max = 30528 (-135.6 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 04:09:46.284 -07 000000608 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30522, posNoise = 6, negNoise = 7
17-03-18 04:09:46.284 -07 000000608 INF: Z Motor: After move to -0.136407, error = 0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:09:46.284 -07 000000608 INF: Z Motor: Settle wait time = 1469 ms, measure time = 117 ms (allowed 150 ms), total time = 1586 ms
17-03-18 04:09:46.284 -07 000000608 INF: Z Motor: Waiting extra 33 ms after reading position to reach expected total of 150 ms
17-03-18 04:09:46.324 -07 000000608 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1628 ms
17-03-18 04:09:46.324 -07 000000608 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:09:46.324 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:09:46.324 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:09:46.324 -07 000000474 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:09:46.324 -07 000000437 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:09:46.324 -07 000000455 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:09:46.324 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:09:46.324 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 04:09:46.324 -07 000000455 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:09:46.334 -07 000000455 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 04:09:46.334 -07 000000455 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:09:46.334 -07 000000455 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 04:09:46.334 -07 000000455 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-18 04:09:46.344 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:09:46.384 -07 000000437 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:09:46.514 -07 000000437 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 121, FrontChillerTemperature: 3.986717,
17-03-18 04:09:46.644 -07 000000590 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:09:46.644 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 120. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1718, R2=1787, Total=3505. Warn if over 250 bubbles per interval.
17-03-18 04:09:46.684 -07 000000561 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:09:46.684 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:09:46.684 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:09:46.684 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1510113608, 0x0, 559484976) start.
17-03-18 04:09:46.724 -07 000000579 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:09:46.724 -07 000000501 INF: FPGA: Recv CAMSNAP
17-03-18 04:09:46.724 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 04:09:46.804 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1510113608, 0x0, 559484976) end. Duration was 120 ms.
17-03-18 04:09:46.804 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:09:46.814 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 04:09:46.814 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 122 ms.
17-03-18 04:09:46.824 -07 000000012 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:09:46.824 -07 000000579 INF: Autofocus start
17-03-18 04:09:46.824 -07 000000579 INF: MeasureProfile start
17-03-18 04:09:46.834 -07 000000561 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:09:46.834 -07 000000012 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 04:09:46.834 -07 000000012 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:09:46.844 -07 000000579 INF: MeasureProfile done
17-03-18 04:09:46.844 -07 000000579 INF: X=-8  Z correction [um]=-0.04234553
17-03-18 04:09:46.844 -07 000000579 INF: Autofocus finished
17-03-18 04:09:47.034 -07 000000625 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:09:47.034 -07 000000012 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:09:47.034 -07 000000610 INF: ------------ Scan Snapping tile 12 at Y-position 69.02734375, Z-position -0.136403155001963. ----------
17-03-18 04:09:47.044 -07 000000610 INF: Cycle	121	Tile	12	Exposure Settings		A	415	G	200	T	200	C	415
17-03-18 04:09:47.044 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28301, sync = True, waitForSettling = True)
17-03-18 04:09:47.044 -07 000000610 INF: Z Motor: Moving to -0.129554 mm, started at -0.136403 mm, distance = 6.85 um
17-03-18 04:09:47.044 -07 000000610 INF: FPGA: Xmit ZDACW 28301\n [Z Motor]
17-03-18 04:09:47.044 -07 000000512 INF: FPGA: Recv ZDACW
17-03-18 04:09:47.054 -07 000000610 INF: FPGA: 'ZDACW 28301' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 04:09:47.054 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:09:47.054 -07 000000626 INF: FPGA: Recv ZDACR 28301
17-03-18 04:09:47.064 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:47.064 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:09:47.214 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:47.214 -07 000000626 INF: FPGA: Recv ZSGSRD 29460
17-03-18 04:09:47.224 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:47.224 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:47.224 -07 000000625 INF: FPGA: Recv ZSGSRD 29459
17-03-18 04:09:47.234 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:47.234 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:47.234 -07 000000012 INF: FPGA: Recv ZSGSRD 29456
17-03-18 04:09:47.244 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:47.244 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:47.244 -07 000000487 INF: FPGA: Recv ZSGSRD 29458
17-03-18 04:09:47.254 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:47.254 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:47.254 -07 000000561 INF: FPGA: Recv ZSGSRD 29457
17-03-18 04:09:47.264 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:47.264 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:47.264 -07 000000626 INF: FPGA: Recv ZSGSRD 29458
17-03-18 04:09:47.274 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:09:47.274 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:47.274 -07 000000618 INF: FPGA: Recv ZSGSRD 29451
17-03-18 04:09:47.284 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 04:09:47.284 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:47.284 -07 000000626 INF: FPGA: Recv ZSGSRD 29453
17-03-18 04:09:47.294 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:47.294 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:47.294 -07 000000447 INF: FPGA: Recv ZSGSRD 29462
17-03-18 04:09:47.304 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:47.304 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:47.304 -07 000000590 INF: FPGA: Recv ZSGSRD 29454
17-03-18 04:09:47.314 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:47.314 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:09:47.314 -07 000000444 INF: FPGA: Recv ZPIEZORD 24912
17-03-18 04:09:47.324 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:47.324 -07 000000610 INF: Z Motor: Piezo is near 33.2 V (nominally 0 to 100 V), expect near 43.2 V, since DAC is at 4.318 V. Piezo Error = -10.0 V.
17-03-18 04:09:47.324 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.6 um, Read 10 ADC samples: Avg = 29457 (-128.8 uncal um), Error = 0.8 uncal um, Median = 29458 (-128.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29451 (-128.7 uncal um), Max = 29462 (-128.8 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 04:09:47.324 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29457, posNoise = 5, negNoise = 6
17-03-18 04:09:47.324 -07 000000610 INF: Z Motor: After move to -0.129554, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:09:47.324 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 04:09:47.324 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:09:47.324 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:09:47.324 -07 000000455 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:09:47.324 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:09:47.324 -07 000000437 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:09:47.324 -07 000000447 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:09:47.334 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:09:47.334 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 04:09:47.334 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:09:47.334 -07 000000474 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:09:47.334 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 04:09:47.334 -07 000000447 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:09:47.334 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 04:09:47.334 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:09:47.334 -07 000000447 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 04:09:47.334 -07 000000447 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:09:47.344 -07 000000447 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 04:09:47.344 -07 000000447 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 04:09:47.344 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 04:09:47.344 -07 000000455 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 04:09:47.344 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 415 415 200 200 28478 150\n [Camera]
17-03-18 04:09:47.544 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:09:47.964 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 607
17-03-18 04:09:47.964 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 607
17-03-18 04:09:47.964 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 607
17-03-18 04:09:47.964 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 607
17-03-18 04:09:47.964 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:09:47.964 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:09:47.964 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 2684358704, 0x0, 391868352) start.
17-03-18 04:09:47.964 -07 000000444 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:09:47.964 -07 000000444 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:09:47.964 -07 000000444 INF: Camera: sBCa_ReadImage(785074704, 2719780968, 0x0, 418435064) start.
17-03-18 04:09:48.154 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28478 800
17-03-18 04:09:48.304 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning grn on 950
17-03-18 04:09:48.364 -07 000000444 INF: Camera: sBCa_ReadImage(785074704, 2719780968, 0x0, 418435064) end. Duration was 400 ms.
17-03-18 04:09:48.364 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 2684358704, 0x0, 391868352) end. Duration was 401 ms.
17-03-18 04:09:48.364 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 04:09:48.364 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:09:48.364 -07 000000444 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 04:09:48.364 -07 000000444 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:09:48.374 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:09:48.374 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-18 04:09:48.374 -07 000000444 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:09:48.374 -07 000000444 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-18 04:09:48.504 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1150
17-03-18 04:09:48.504 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1150
17-03-18 04:09:48.504 -07 000000487 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:09:48.644 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1150
17-03-18 04:09:48.644 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1150
17-03-18 04:09:48.644 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:09:48.644 -07 000000487 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:09:48.644 -07 000000487 INF: Camera: sBCa_ReadImage(785074288, 2755203232, 0x0, 391868352) start.
17-03-18 04:09:48.654 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:09:48.654 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-18 04:09:48.694 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP 1343
17-03-18 04:09:48.694 -07 000000012 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:09:48.694 -07 000000610 INF: FPGA: 'CAMDBLSNAP 415 415 200 200 28478 150' command took 2 ms to send, 1345 ms to get response, and 1349 ms overall
17-03-18 04:09:48.694 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 04:09:48.694 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 13 at Y-position 69.02734375, Z-Position -0.129561369070988. ------
17-03-18 04:09:48.704 -07 000000618 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:09:48.704 -07 000000480 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.8726 mm, moving Z to -0.13601 mm
17-03-18 04:09:48.704 -07 000000480 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:09:48.704 -07 000000012 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:09:48.704 -07 000000437 INF: Y Motor: Entering MoveAbsStepped (target = 111796 steps, sync = True, waitForSettling = True)
17-03-18 04:09:48.704 -07 000000437 INF: Y Motor: Moving to 69.8726 mm, started at 69.0273 mm, delta = 0.8453 mm
17-03-18 04:09:48.704 -07 000000455 INF: Z Motor: Entering MoveAbsStepped (DAC = 29710, sync = True, waitForSettling = False)
17-03-18 04:09:48.704 -07 000000455 INF: Z Motor: Moving to -0.136004 mm, started at -0.129561 mm, distance = -6.44 um
17-03-18 04:09:48.714 -07 000000618 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:48.714 -07 000000455 INF: FPGA: Xmit ZDACW 29710\n [Z Motor]
17-03-18 04:09:48.714 -07 000000561 INF: FPGA: Recv ZDACW
17-03-18 04:09:48.724 -07 000000437 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:09:48.724 -07 000000455 INF: FPGA: 'ZDACW 29710' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-18 04:09:48.724 -07 000000579 INF: FPGA: Recv YRDPOS 141368
17-03-18 04:09:48.734 -07 000000618 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:09:48.734 -07 000000437 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-18 04:09:48.734 -07 000000437 INF: Y Motor: Encoder = 141368 = motor step 110443.8 = 69.0273 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:09:48.734 -07 000000437 INF: Y Motor: Last commanded position = 69.0426 mm (110468.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:09:48.734 -07 000000437 INF: Y Motor: Moving 1352 steps-31
17-03-18 04:09:48.744 -07 000000455 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:09:48.744 -07 000000012 INF: FPGA: Recv ZDACR 29710
17-03-18 04:09:48.754 -07 000000437 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:09:48.754 -07 000000455 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 04:09:48.754 -07 000000455 INF: Z Motor: MoveAbsStepped took 45 ms (did NOT wait for settling yet))
17-03-18 04:09:48.934 -07 000000474 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:09:48.934 -07 000000618 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 04:09:49.044 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 392 ms.
17-03-18 04:09:49.044 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-18 04:09:49.044 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:09:49.044 -07 000000487 INF: Camera: sBCa_ReadImage(785074288, 2755203232, 0x0, 391868352) end. Duration was 398 ms.
17-03-18 04:09:49.044 -07 000000487 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 04:09:49.044 -07 000000487 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:09:49.054 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:09:49.054 -07 000000487 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:09:49.054 -07 000000487 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 546 ms.
17-03-18 04:09:49.054 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-18 04:09:49.134 -07 000000512 INF: FPGA: Recv YMVTILE
17-03-18 04:09:49.134 -07 000000437 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 371 ms to get response, and 398 ms overall
17-03-18 04:09:49.174 -07 000000437 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:09:49.184 -07 000000474 INF: FPGA: Recv YRDPOS 143080
17-03-18 04:09:49.184 -07 000000437 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 04:09:49.184 -07 000000437 INF: Y Motor: Encoder = 143080 = motor step 111781.3 = 69.8633 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:09:49.184 -07 000000437 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm)
17-03-18 04:09:49.184 -07 000000437 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 399 ms, distance = 0.845 mm, average velocity = 2.118 mm/sec
17-03-18 04:09:50.134 -07 000000437 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:09:50.134 -07 000000455 INF: FPGA: Recv YRDPOS 143080
17-03-18 04:09:50.144 -07 000000437 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:09:50.144 -07 000000437 INF: Y Motor: Encoder = 143080 = motor step 111781.3 = 69.8633 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:09:50.164 -07 000000437 INF: Y Motor: After move to 69.872612, error = -0.009331, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:09:50.164 -07 000000437 INF: Y Motor: Position error after settling (table move) = -19 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:09:50.164 -07 000000437 INF: Y Motor: Moved to 69.8633 after 1465 ms (table move)
17-03-18 04:09:50.174 -07 000000480 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136004 mm (DAC = 29710)
17-03-18 04:09:50.174 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:50.174 -07 000000611 INF: FPGA: Recv ZSGSRD 30461
17-03-18 04:09:50.184 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:09:50.184 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:50.184 -07 000000455 INF: FPGA: Recv ZSGSRD 30454
17-03-18 04:09:50.194 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:50.194 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:50.194 -07 000000487 INF: FPGA: Recv ZSGSRD 30456
17-03-18 04:09:50.204 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:50.204 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:50.204 -07 000000618 INF: FPGA: Recv ZSGSRD 30454
17-03-18 04:09:50.214 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:50.214 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:50.214 -07 000000561 INF: FPGA: Recv ZSGSRD 30460
17-03-18 04:09:50.224 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:50.224 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:50.224 -07 000000512 INF: FPGA: Recv ZSGSRD 30462
17-03-18 04:09:50.234 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:50.234 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:50.234 -07 000000444 INF: FPGA: Recv ZSGSRD 30463
17-03-18 04:09:50.244 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:50.244 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:50.244 -07 000000611 INF: FPGA: Recv ZSGSRD 30467
17-03-18 04:09:50.254 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:50.254 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:50.254 -07 000000474 INF: FPGA: Recv ZSGSRD 30453
17-03-18 04:09:50.264 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 04:09:50.264 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:50.264 -07 000000501 INF: FPGA: Recv ZSGSRD 30454
17-03-18 04:09:50.274 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:50.274 -07 000000480 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:09:50.274 -07 000000447 INF: FPGA: Recv ZPIEZORD 26224
17-03-18 04:09:50.284 -07 000000480 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:50.284 -07 000000480 INF: Z Motor: Piezo is near 36.0 V (nominally 0 to 100 V), expect near 45.3 V, since DAC is at 4.533 V. Piezo Error = -9.3 V.
17-03-18 04:09:50.284 -07 000000480 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.0 um, Read 10 ADC samples: Avg = 30458 (-135.2 uncal um), Error = 0.8 uncal um, Median = 30458 (-135.2 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 30453 (-135.2 uncal um), Max = 30467 (-135.3 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 04:09:50.284 -07 000000480 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30458, posNoise = 9, negNoise = 5
17-03-18 04:09:50.284 -07 000000480 INF: Z Motor: After move to -0.136004, error = 0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:09:50.284 -07 000000480 INF: Z Motor: Settle wait time = 1468 ms, measure time = 108 ms (allowed 150 ms), total time = 1576 ms
17-03-18 04:09:50.284 -07 000000480 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-18 04:09:50.334 -07 000000480 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1629 ms
17-03-18 04:09:50.334 -07 000000480 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:09:50.334 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:09:50.334 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:09:50.334 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:09:50.334 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:09:50.334 -07 000000444 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:09:50.334 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:09:50.334 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:09:50.334 -07 000000444 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:09:50.334 -07 000000444 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 04:09:50.344 -07 000000444 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:09:50.344 -07 000000444 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 04:09:50.344 -07 000000444 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 04:09:50.344 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:09:50.394 -07 000000444 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:09:50.694 -07 000000561 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:09:50.694 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:09:50.694 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:09:50.694 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2147487792, 0x0, 559484976) start.
17-03-18 04:09:50.734 -07 000000455 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:09:50.734 -07 000000501 INF: FPGA: Recv CAMSNAP
17-03-18 04:09:50.734 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 374 ms to get response, and 384 ms overall
17-03-18 04:09:50.814 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2147487792, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 04:09:50.814 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:09:50.814 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 04:09:50.814 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 04:09:50.834 -07 000000626 INF: Autofocus start
17-03-18 04:09:50.834 -07 000000626 INF: MeasureProfile start
17-03-18 04:09:50.834 -07 000000480 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:09:50.834 -07 000000455 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:09:50.844 -07 000000480 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:09:50.844 -07 000000480 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:09:50.844 -07 000000626 INF: MeasureProfile done
17-03-18 04:09:50.844 -07 000000626 INF: X=-16  Z correction [um]=-0.08128808
17-03-18 04:09:50.844 -07 000000626 INF: Autofocus finished
17-03-18 04:09:51.044 -07 000000625 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:09:51.044 -07 000000480 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:09:51.044 -07 000000610 INF: ------------ Scan Snapping tile 13 at Y-position 69.86328125, Z-position -0.13599200542489. ----------
17-03-18 04:09:51.044 -07 000000610 INF: Cycle	121	Tile	13	Exposure Settings		A	415	G	200	T	200	C	415
17-03-18 04:09:51.054 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28205, sync = True, waitForSettling = True)
17-03-18 04:09:51.054 -07 000000610 INF: Z Motor: Moving to -0.129114 mm, started at -0.135992 mm, distance = 6.88 um
17-03-18 04:09:51.054 -07 000000610 INF: FPGA: Xmit ZDACW 28205\n [Z Motor]
17-03-18 04:09:51.054 -07 000000561 INF: FPGA: Recv ZDACW
17-03-18 04:09:51.064 -07 000000610 INF: FPGA: 'ZDACW 28205' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:51.064 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:09:51.064 -07 000000618 INF: FPGA: Recv ZDACR 28205
17-03-18 04:09:51.074 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:51.074 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:09:51.224 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:51.224 -07 000000608 INF: FPGA: Recv ZSGSRD 29388
17-03-18 04:09:51.234 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:09:51.234 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:51.234 -07 000000512 INF: FPGA: Recv ZSGSRD 29388
17-03-18 04:09:51.244 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:51.244 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:51.244 -07 000000611 INF: FPGA: Recv ZSGSRD 29388
17-03-18 04:09:51.254 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:51.254 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:51.254 -07 000000590 INF: FPGA: Recv ZSGSRD 29388
17-03-18 04:09:51.264 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:51.264 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:51.264 -07 000000455 INF: FPGA: Recv ZSGSRD 29386
17-03-18 04:09:51.274 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:51.274 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:51.274 -07 000000447 INF: FPGA: Recv ZSGSRD 29387
17-03-18 04:09:51.284 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:51.284 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:51.284 -07 000000444 INF: FPGA: Recv ZSGSRD 29390
17-03-18 04:09:51.294 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:51.294 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:51.294 -07 000000611 INF: FPGA: Recv ZSGSRD 29386
17-03-18 04:09:51.304 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:51.304 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:51.304 -07 000000590 INF: FPGA: Recv ZSGSRD 29386
17-03-18 04:09:51.314 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:51.314 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:51.314 -07 000000455 INF: FPGA: Recv ZSGSRD 29387
17-03-18 04:09:51.324 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:51.324 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:09:51.324 -07 000000480 INF: FPGA: Recv ZPIEZORD 24822
17-03-18 04:09:51.334 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:51.334 -07 000000610 INF: Z Motor: Piezo is near 33.0 V (nominally 0 to 100 V), expect near 43.0 V, since DAC is at 4.304 V. Piezo Error = -10.0 V.
17-03-18 04:09:51.334 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.1 um, Read 10 ADC samples: Avg = 29387 (-128.3 uncal um), Error = 0.8 uncal um, Median = 29388 (-128.3 uncal um), StdDev = 1 (0.0 uncal um), Range = 4 (0.0 uncal um), Min = 29386 (-128.3 uncal um), Max = 29390 (-128.4 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 1 (0.0 uncal um)
17-03-18 04:09:51.334 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29387, posNoise = 3, negNoise = 1
17-03-18 04:09:51.334 -07 000000610 INF: Z Motor: After move to -0.129114, error = 0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:09:51.334 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 04:09:51.334 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:09:51.334 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:09:51.334 -07 000000611 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:09:51.334 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:09:51.334 -07 000000455 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:09:51.334 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:09:51.334 -07 000000447 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:09:51.334 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:09:51.334 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:09:51.334 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:09:51.334 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:09:51.334 -07 000000447 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:09:51.334 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 04:09:51.334 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:09:51.344 -07 000000447 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 04:09:51.344 -07 000000447 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:09:51.344 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 04:09:51.344 -07 000000455 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 04:09:51.354 -07 000000447 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 04:09:51.354 -07 000000447 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 04:09:51.354 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 415 415 200 200 28382 150\n [Camera]
17-03-18 04:09:51.554 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:09:51.644 -07 000000444 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:09:51.644 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 120. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1718, R2=1787, Total=3505. Warn if over 250 bubbles per interval.
17-03-18 04:09:51.874 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 121, FrontChillerTemperature: 4.019446,
17-03-18 04:09:51.964 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 607
17-03-18 04:09:51.964 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 607
17-03-18 04:09:51.964 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:09:51.974 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 607
17-03-18 04:09:51.974 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 607
17-03-18 04:09:51.974 -07 000000625 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:09:51.974 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:09:51.974 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 2166569176, 0x0, 391868352) start.
17-03-18 04:09:51.984 -07 000000625 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:09:51.984 -07 000000625 INF: Camera: sBCa_ReadImage(785074704, 2201991440, 0x0, 418435064) start.
17-03-18 04:09:52.164 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28382 801
17-03-18 04:09:52.304 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning grn on 950
17-03-18 04:09:52.354 -07 000000625 INF: Camera: sBCa_ReadImage(785074704, 2201991440, 0x0, 418435064) end. Duration was 368 ms.
17-03-18 04:09:52.354 -07 000000625 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 368 ms.
17-03-18 04:09:52.354 -07 000000625 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:09:52.354 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 2166569176, 0x0, 391868352) end. Duration was 373 ms.
17-03-18 04:09:52.354 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 374 ms.
17-03-18 04:09:52.354 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:09:52.354 -07 000000625 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:09:52.354 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:09:52.354 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-18 04:09:52.364 -07 000000625 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-18 04:09:52.514 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1150
17-03-18 04:09:52.514 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1150
17-03-18 04:09:52.514 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:09:52.514 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1150
17-03-18 04:09:52.514 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1150
17-03-18 04:09:52.514 -07 000000474 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:09:52.514 -07 000000474 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:09:52.514 -07 000000474 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 04:09:52.514 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:09:52.514 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-18 04:09:52.704 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP 1343
17-03-18 04:09:52.704 -07 000000012 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:09:52.704 -07 000000610 INF: FPGA: 'CAMDBLSNAP 415 415 200 200 28382 150' command took 2 ms to send, 1342 ms to get response, and 1350 ms overall
17-03-18 04:09:52.704 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 04:09:52.704 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 14 at Y-position 69.86328125, Z-Position -0.129111674221064. ------
17-03-18 04:09:52.704 -07 000000487 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:09:52.704 -07 000000501 INF: Y Motor: MoveYZ optimized starting. Moving Y to 70.7026 mm, moving Z to -0.13562 mm
17-03-18 04:09:52.704 -07 000000501 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:09:52.714 -07 000000579 INF: Z Motor: Entering MoveAbsStepped (DAC = 29626, sync = True, waitForSettling = False)
17-03-18 04:09:52.714 -07 000000579 INF: Z Motor: Moving to -0.135619 mm, started at -0.129112 mm, distance = -6.51 um
17-03-18 04:09:52.714 -07 000000579 INF: FPGA: Xmit ZDACW 29626\n [Z Motor]
17-03-18 04:09:52.714 -07 000000626 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:09:52.714 -07 000000561 INF: Y Motor: Entering MoveAbsStepped (target = 113124 steps, sync = True, waitForSettling = True)
17-03-18 04:09:52.714 -07 000000561 INF: Y Motor: Moving to 70.7026 mm, started at 69.8633 mm, delta = 0.8393 mm
17-03-18 04:09:52.714 -07 000000487 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 4 ms to get response, and 6 ms overall
17-03-18 04:09:52.714 -07 000000447 INF: FPGA: Recv ZDACW
17-03-18 04:09:52.724 -07 000000579 INF: FPGA: 'ZDACW 29626' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 04:09:52.724 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:09:52.724 -07 000000626 INF: FPGA: Recv YRDPOS 143081
17-03-18 04:09:52.734 -07 000000487 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:09:52.734 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-18 04:09:52.734 -07 000000561 INF: Y Motor: Encoder = 143081 = motor step 111782.0 = 69.8638 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:09:52.734 -07 000000561 INF: Y Motor: Last commanded position = 69.8726 mm (111796.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:09:52.734 -07 000000561 INF: Y Motor: Moving 1342 steps-19
17-03-18 04:09:52.744 -07 000000579 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:09:52.744 -07 000000438 INF: FPGA: Recv ZDACR 29626
17-03-18 04:09:52.754 -07 000000561 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:09:52.754 -07 000000579 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 04:09:52.754 -07 000000579 INF: Z Motor: MoveAbsStepped took 39 ms (did NOT wait for settling yet))
17-03-18 04:09:52.914 -07 000000474 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 397 ms.
17-03-18 04:09:52.914 -07 000000474 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 04:09:52.914 -07 000000474 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:09:52.914 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 396 ms.
17-03-18 04:09:52.914 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 04:09:52.914 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:09:52.914 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:09:52.914 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:09:52.914 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-18 04:09:52.924 -07 000000474 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-18 04:09:52.934 -07 000000590 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:09:52.934 -07 000000487 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 216 ms overall
17-03-18 04:09:53.124 -07 000000437 INF: FPGA: Recv YMVTILE
17-03-18 04:09:53.124 -07 000000561 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 394 ms overall
17-03-18 04:09:53.174 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:09:53.184 -07 000000474 INF: FPGA: Recv YRDPOS 144770
17-03-18 04:09:53.184 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 6 ms overall
17-03-18 04:09:53.184 -07 000000561 INF: Y Motor: Encoder = 144770 = motor step 113101.6 = 70.6885 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:09:53.184 -07 000000561 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-18 04:09:53.184 -07 000000561 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.839 mm, average velocity = 2.130 mm/sec
17-03-18 04:09:54.134 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:09:54.134 -07 000000579 INF: FPGA: Recv YRDPOS 144770
17-03-18 04:09:54.144 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:54.144 -07 000000561 INF: Y Motor: Encoder = 144770 = motor step 113101.6 = 70.6885 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:09:54.174 -07 000000561 INF: Y Motor: After move to 70.702606, error = -0.014130, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:09:54.174 -07 000000561 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:09:54.174 -07 000000561 INF: Y Motor: Moved to 70.6885 after 1455 ms (table move)
17-03-18 04:09:54.174 -07 000000501 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135619 mm (DAC = 29626)
17-03-18 04:09:54.174 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:54.174 -07 000000611 INF: FPGA: Recv ZSGSRD 30403
17-03-18 04:09:54.184 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 04:09:54.184 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:54.184 -07 000000579 INF: FPGA: Recv ZSGSRD 30399
17-03-18 04:09:54.194 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:54.194 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:54.194 -07 000000474 INF: FPGA: Recv ZSGSRD 30404
17-03-18 04:09:54.204 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:54.204 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:54.204 -07 000000487 INF: FPGA: Recv ZSGSRD 30407
17-03-18 04:09:54.214 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:54.214 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:54.214 -07 000000447 INF: FPGA: Recv ZSGSRD 30398
17-03-18 04:09:54.224 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:54.224 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:54.224 -07 000000444 INF: FPGA: Recv ZSGSRD 30400
17-03-18 04:09:54.234 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:54.234 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:54.234 -07 000000625 INF: FPGA: Recv ZSGSRD 30400
17-03-18 04:09:54.244 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:54.244 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:54.244 -07 000000561 INF: FPGA: Recv ZSGSRD 30400
17-03-18 04:09:54.254 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:54.254 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:54.254 -07 000000512 INF: FPGA: Recv ZSGSRD 30401
17-03-18 04:09:54.264 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:54.264 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:54.264 -07 000000479 INF: FPGA: Recv ZSGSRD 30402
17-03-18 04:09:54.274 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:54.274 -07 000000501 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:09:54.274 -07 000000611 INF: FPGA: Recv ZPIEZORD 26158
17-03-18 04:09:54.284 -07 000000501 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:54.284 -07 000000501 INF: Z Motor: Piezo is near 35.9 V (nominally 0 to 100 V), expect near 45.2 V, since DAC is at 4.521 V. Piezo Error = -9.3 V.
17-03-18 04:09:54.284 -07 000000501 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.6 um, Read 10 ADC samples: Avg = 30401 (-134.8 uncal um), Error = 0.8 uncal um, Median = 30400 (-134.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 30398 (-134.8 uncal um), Max = 30407 (-134.9 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 04:09:54.284 -07 000000501 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30401, posNoise = 6, negNoise = 3
17-03-18 04:09:54.284 -07 000000501 INF: Z Motor: After move to -0.135619, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:09:54.284 -07 000000501 INF: Z Motor: Settle wait time = 1462 ms, measure time = 107 ms (allowed 150 ms), total time = 1569 ms
17-03-18 04:09:54.284 -07 000000501 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-18 04:09:54.334 -07 000000501 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1621 ms
17-03-18 04:09:54.334 -07 000000501 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:09:54.334 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:09:54.334 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:09:54.334 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:09:54.334 -07 000000474 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:09:54.334 -07 000000447 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:09:54.334 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:09:54.344 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 04:09:54.344 -07 000000447 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:09:54.344 -07 000000447 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 04:09:54.344 -07 000000447 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:09:54.354 -07 000000447 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 04:09:54.354 -07 000000447 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-18 04:09:54.354 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:09:54.404 -07 000000480 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:09:54.704 -07 000000479 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:09:54.704 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:09:54.704 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:09:54.704 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2147487792, 0x0, 559484976) start.
17-03-18 04:09:54.744 -07 000000474 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:09:54.744 -07 000000512 INF: FPGA: Recv CAMSNAP
17-03-18 04:09:54.744 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 381 ms to get response, and 388 ms overall
17-03-18 04:09:54.814 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2147487792, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 04:09:54.814 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:09:54.814 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 04:09:54.814 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 04:09:54.844 -07 000000479 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:09:54.844 -07 000000626 INF: Autofocus start
17-03-18 04:09:54.844 -07 000000626 INF: MeasureProfile start
17-03-18 04:09:54.844 -07 000000625 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:09:54.854 -07 000000479 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 04:09:54.854 -07 000000479 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:09:54.854 -07 000000626 INF: MeasureProfile done
17-03-18 04:09:54.854 -07 000000626 INF: X=-16  Z correction [um]=-0.08128808
17-03-18 04:09:54.854 -07 000000626 INF: Autofocus finished
17-03-18 04:09:55.054 -07 000000611 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:09:55.054 -07 000000479 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:09:55.054 -07 000000610 INF: ------------ Scan Snapping tile 14 at Y-position 70.6884765625, Z-position -0.13562582533281. ----------
17-03-18 04:09:55.064 -07 000000610 INF: Cycle	121	Tile	14	Exposure Settings		A	415	G	200	T	200	C	415
17-03-18 04:09:55.064 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28121, sync = True, waitForSettling = True)
17-03-18 04:09:55.064 -07 000000610 INF: Z Motor: Moving to -0.128730 mm, started at -0.135626 mm, distance = 6.90 um
17-03-18 04:09:55.064 -07 000000610 INF: FPGA: Xmit ZDACW 28121\n [Z Motor]
17-03-18 04:09:55.064 -07 000000455 INF: FPGA: Recv ZDACW
17-03-18 04:09:55.074 -07 000000610 INF: FPGA: 'ZDACW 28121' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:09:55.074 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:09:55.074 -07 000000447 INF: FPGA: Recv ZDACR 28121
17-03-18 04:09:55.084 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:55.084 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:09:55.234 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:55.234 -07 000000455 INF: FPGA: Recv ZSGSRD 29328
17-03-18 04:09:55.244 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:55.244 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:55.244 -07 000000447 INF: FPGA: Recv ZSGSRD 29332
17-03-18 04:09:55.254 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:55.254 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:55.254 -07 000000585 INF: FPGA: Recv ZSGSRD 29336
17-03-18 04:09:55.264 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:55.264 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:55.264 -07 000000480 INF: FPGA: Recv ZSGSRD 29328
17-03-18 04:09:55.274 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:55.274 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:55.274 -07 000000618 INF: FPGA: Recv ZSGSRD 29326
17-03-18 04:09:55.284 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:55.284 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:55.284 -07 000000444 INF: FPGA: Recv ZSGSRD 29331
17-03-18 04:09:55.294 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:55.294 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:55.294 -07 000000512 INF: FPGA: Recv ZSGSRD 29332
17-03-18 04:09:55.304 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:55.304 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:55.304 -07 000000585 INF: FPGA: Recv ZSGSRD 29334
17-03-18 04:09:55.314 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:55.314 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:55.314 -07 000000479 INF: FPGA: Recv ZSGSRD 29329
17-03-18 04:09:55.324 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:55.324 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:55.324 -07 000000437 INF: FPGA: Recv ZSGSRD 29326
17-03-18 04:09:55.334 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:55.334 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:09:55.334 -07 000000438 INF: FPGA: Recv ZPIEZORD 24739
17-03-18 04:09:55.344 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:55.344 -07 000000610 INF: Z Motor: Piezo is near 32.8 V (nominally 0 to 100 V), expect near 42.9 V, since DAC is at 4.291 V. Piezo Error = -10.1 V.
17-03-18 04:09:55.344 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.7 um, Read 10 ADC samples: Avg = 29330 (-128.0 uncal um), Error = 0.8 uncal um, Median = 29330 (-128.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29326 (-127.9 uncal um), Max = 29336 (-128.0 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 04:09:55.344 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29330, posNoise = 6, negNoise = 4
17-03-18 04:09:55.344 -07 000000610 INF: Z Motor: After move to -0.128730, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:09:55.344 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 04:09:55.344 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:09:55.344 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:09:55.344 -07 000000487 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:09:55.344 -07 000000590 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:09:55.344 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:09:55.344 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:09:55.344 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:09:55.344 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:09:55.344 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:09:55.344 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:09:55.344 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:09:55.344 -07 000000590 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:09:55.354 -07 000000590 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 04:09:55.354 -07 000000590 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:09:55.354 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 04:09:55.354 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:09:55.364 -07 000000590 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-18 04:09:55.364 -07 000000590 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 04:09:55.364 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 11 ms.
17-03-18 04:09:55.364 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 17 ms.
17-03-18 04:09:55.364 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 415 415 200 200 28297 150\n [Camera]
17-03-18 04:09:55.564 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:09:55.984 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 611
17-03-18 04:09:55.984 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 611
17-03-18 04:09:55.984 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:09:55.984 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:09:55.984 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 2334719600, 0x0, 391868352) start.
17-03-18 04:09:55.984 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 611
17-03-18 04:09:55.984 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 611
17-03-18 04:09:55.984 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:09:55.984 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:09:55.984 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 2370141864, 0x0, 418435064) start.
17-03-18 04:09:56.174 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28297 800
17-03-18 04:09:56.324 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning grn on 950
17-03-18 04:09:56.374 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 2370141864, 0x0, 418435064) end. Duration was 389 ms.
17-03-18 04:09:56.374 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-18 04:09:56.374 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:09:56.384 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 2334719600, 0x0, 391868352) end. Duration was 393 ms.
17-03-18 04:09:56.384 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-18 04:09:56.384 -07 000000444 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:09:56.384 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:09:56.384 -07 000000444 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:09:56.384 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 04:09:56.384 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 04:09:56.524 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1150
17-03-18 04:09:56.524 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1150
17-03-18 04:09:56.524 -07 000000479 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:09:56.524 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1150
17-03-18 04:09:56.524 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1150
17-03-18 04:09:56.524 -07 000000611 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:09:56.524 -07 000000611 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:09:56.524 -07 000000611 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 04:09:56.534 -07 000000479 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:09:56.534 -07 000000479 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-18 04:09:56.644 -07 000000474 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:09:56.644 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 120. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1718, R2=1787, Total=3505. Warn if over 250 bubbles per interval.
17-03-18 04:09:56.714 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP 1342
17-03-18 04:09:56.714 -07 000000437 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:09:56.714 -07 000000610 INF: FPGA: 'CAMDBLSNAP 415 415 200 200 28297 150' command took 2 ms to send, 1346 ms to get response, and 1350 ms overall
17-03-18 04:09:56.714 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 04:09:56.714 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 15 at Y-position 70.6884765625, Z-Position -0.128745494128984. ------
17-03-18 04:09:56.724 -07 000000444 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:09:56.724 -07 000000455 INF: Y Motor: MoveYZ optimized starting. Moving Y to 71.5326 mm, moving Z to -0.13534 mm
17-03-18 04:09:56.724 -07 000000455 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:09:56.724 -07 000000512 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:09:56.724 -07 000000437 INF: Z Motor: Entering MoveAbsStepped (DAC = 29564, sync = True, waitForSettling = False)
17-03-18 04:09:56.724 -07 000000437 INF: Z Motor: Moving to -0.135335 mm, started at -0.128745 mm, distance = -6.59 um
17-03-18 04:09:56.724 -07 000000487 INF: Y Motor: Entering MoveAbsStepped (target = 114452 steps, sync = True, waitForSettling = True)
17-03-18 04:09:56.724 -07 000000487 INF: Y Motor: Moving to 71.5326 mm, started at 70.6885 mm, delta = 0.8441 mm
17-03-18 04:09:56.734 -07 000000444 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:09:56.734 -07 000000487 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:09:56.734 -07 000000501 INF: FPGA: Recv YRDPOS 144771
17-03-18 04:09:56.744 -07 000000487 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:09:56.744 -07 000000487 INF: Y Motor: Encoder = 144771 = motor step 113102.3 = 70.6890 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:09:56.744 -07 000000444 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:09:56.744 -07 000000487 INF: Y Motor: Last commanded position = 70.7026 mm (113124.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:09:56.744 -07 000000487 INF: Y Motor: Moving 1350 steps-29
17-03-18 04:09:56.754 -07 000000437 INF: FPGA: Xmit ZDACW 29564\n [Z Motor]
17-03-18 04:09:56.754 -07 000000585 INF: FPGA: Recv ZDACW
17-03-18 04:09:56.764 -07 000000487 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:09:56.764 -07 000000437 INF: FPGA: 'ZDACW 29564' command took 0 ms to send, 0 ms to get response, and 31 ms overall
17-03-18 04:09:56.774 -07 000000437 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:09:56.774 -07 000000590 INF: FPGA: Recv ZDACR 29564
17-03-18 04:09:56.784 -07 000000437 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 04:09:56.784 -07 000000437 INF: Z Motor: MoveAbsStepped took 51 ms (did NOT wait for settling yet))
17-03-18 04:09:56.924 -07 000000479 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 397 ms.
17-03-18 04:09:56.924 -07 000000479 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 04:09:56.924 -07 000000479 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:09:56.924 -07 000000611 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 400 ms.
17-03-18 04:09:56.924 -07 000000611 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 04:09:56.924 -07 000000611 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:09:56.934 -07 000000479 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:09:56.934 -07 000000479 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 408 ms.
17-03-18 04:09:56.934 -07 000000611 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:09:56.944 -07 000000611 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-18 04:09:56.944 -07 000000437 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:09:56.944 -07 000000444 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 212 ms overall
17-03-18 04:09:57.134 -07 000000437 INF: FPGA: Recv YMVTILE
17-03-18 04:09:57.134 -07 000000487 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 392 ms overall
17-03-18 04:09:57.184 -07 000000487 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:09:57.184 -07 000000474 INF: FPGA: Recv YRDPOS 146471
17-03-18 04:09:57.194 -07 000000487 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 04:09:57.194 -07 000000487 INF: Y Motor: Encoder = 146471 = motor step 114430.5 = 71.5190 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:09:57.194 -07 000000487 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-18 04:09:57.194 -07 000000487 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 393 ms, distance = 0.844 mm, average velocity = 2.148 mm/sec
17-03-18 04:09:57.234 -07 000000444 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 121, FrontChillerTemperature: 4.023489,
17-03-18 04:09:58.144 -07 000000487 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:09:58.144 -07 000000625 INF: FPGA: Recv YRDPOS 146471
17-03-18 04:09:58.154 -07 000000487 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:09:58.154 -07 000000487 INF: Y Motor: Encoder = 146471 = motor step 114430.5 = 71.5190 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:09:58.174 -07 000000487 INF: Y Motor: After move to 71.532608, error = -0.013565, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:09:58.184 -07 000000487 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:09:58.184 -07 000000487 INF: Y Motor: Moved to 71.5190 after 1451 ms (table move)
17-03-18 04:09:58.184 -07 000000455 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135335 mm (DAC = 29564)
17-03-18 04:09:58.184 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:58.184 -07 000000590 INF: FPGA: Recv ZSGSRD 30362
17-03-18 04:09:58.194 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:09:58.194 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:58.194 -07 000000501 INF: FPGA: Recv ZSGSRD 30350
17-03-18 04:09:58.204 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:58.204 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:58.204 -07 000000479 INF: FPGA: Recv ZSGSRD 30360
17-03-18 04:09:58.214 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:58.214 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:58.214 -07 000000437 INF: FPGA: Recv ZSGSRD 30360
17-03-18 04:09:58.224 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:58.224 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:58.224 -07 000000585 INF: FPGA: Recv ZSGSRD 30358
17-03-18 04:09:58.234 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:58.234 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:58.234 -07 000000611 INF: FPGA: Recv ZSGSRD 30355
17-03-18 04:09:58.244 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:58.244 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:58.244 -07 000000512 INF: FPGA: Recv ZSGSRD 30358
17-03-18 04:09:58.254 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:58.254 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:58.254 -07 000000590 INF: FPGA: Recv ZSGSRD 30355
17-03-18 04:09:58.264 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:58.264 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:58.264 -07 000000444 INF: FPGA: Recv ZSGSRD 30357
17-03-18 04:09:58.274 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:58.274 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:58.274 -07 000000480 INF: FPGA: Recv ZSGSRD 30355
17-03-18 04:09:58.284 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:58.284 -07 000000455 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:09:58.284 -07 000000447 INF: FPGA: Recv ZPIEZORD 26086
17-03-18 04:09:58.294 -07 000000455 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:58.294 -07 000000455 INF: Z Motor: Piezo is near 35.7 V (nominally 0 to 100 V), expect near 45.1 V, since DAC is at 4.511 V. Piezo Error = -9.4 V.
17-03-18 04:09:58.294 -07 000000455 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.3 um, Read 10 ADC samples: Avg = 30357 (-134.6 uncal um), Error = 0.8 uncal um, Median = 30358 (-134.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 30350 (-134.5 uncal um), Max = 30362 (-134.6 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 04:09:58.294 -07 000000455 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30357, posNoise = 5, negNoise = 7
17-03-18 04:09:58.294 -07 000000455 INF: Z Motor: After move to -0.135335, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:09:58.294 -07 000000455 INF: Z Motor: Settle wait time = 1454 ms, measure time = 107 ms (allowed 150 ms), total time = 1561 ms
17-03-18 04:09:58.294 -07 000000455 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-18 04:09:58.344 -07 000000455 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1616 ms
17-03-18 04:09:58.344 -07 000000455 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:09:58.344 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:09:58.344 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:09:58.344 -07 000000585 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:09:58.344 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:09:58.344 -07 000000512 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:09:58.344 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:09:58.344 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 04:09:58.344 -07 000000512 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:09:58.354 -07 000000512 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 04:09:58.354 -07 000000512 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:09:58.364 -07 000000512 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-18 04:09:58.364 -07 000000512 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-18 04:09:58.364 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:09:58.414 -07 000000437 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:09:58.714 -07 000000474 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:09:58.714 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:09:58.714 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:09:58.714 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 675221432, 0x0, 559484976) start.
17-03-18 04:09:58.754 -07 000000501 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:09:58.754 -07 000000437 INF: FPGA: Recv CAMSNAP
17-03-18 04:09:58.754 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 382 ms to get response, and 384 ms overall
17-03-18 04:09:58.834 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 675221432, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 04:09:58.834 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:09:58.834 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 04:09:58.834 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 04:09:58.854 -07 000000455 INF: Autofocus start
17-03-18 04:09:58.854 -07 000000455 INF: MeasureProfile start
17-03-18 04:09:58.854 -07 000000479 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:09:58.854 -07 000000561 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:09:58.864 -07 000000479 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:09:58.864 -07 000000479 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:09:58.864 -07 000000455 INF: MeasureProfile done
17-03-18 04:09:58.864 -07 000000455 INF: X=32  Z correction [um]=0.1299841
17-03-18 04:09:58.864 -07 000000455 INF: Autofocus finished
17-03-18 04:09:59.064 -07 000000480 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:09:59.064 -07 000000479 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:09:59.064 -07 000000610 INF: ------------ Scan Snapping tile 15 at Y-position 71.51904296875, Z-position -0.135343159998572. ----------
17-03-18 04:09:59.064 -07 000000610 INF: Cycle	121	Tile	15	Exposure Settings		A	415	G	200	T	200	C	415
17-03-18 04:09:59.074 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28105, sync = True, waitForSettling = True)
17-03-18 04:09:59.074 -07 000000610 INF: Z Motor: Moving to -0.128656 mm, started at -0.135343 mm, distance = 6.69 um
17-03-18 04:09:59.074 -07 000000610 INF: FPGA: Xmit ZDACW 28105\n [Z Motor]
17-03-18 04:09:59.074 -07 000000438 INF: FPGA: Recv ZDACW
17-03-18 04:09:59.084 -07 000000610 INF: FPGA: 'ZDACW 28105' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:59.084 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:09:59.084 -07 000000561 INF: FPGA: Recv ZDACR 28105
17-03-18 04:09:59.094 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:59.094 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:09:59.244 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:59.244 -07 000000618 INF: FPGA: Recv ZSGSRD 29317
17-03-18 04:09:59.254 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:09:59.254 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:59.254 -07 000000626 INF: FPGA: Recv ZSGSRD 29321
17-03-18 04:09:59.264 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:59.264 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:59.264 -07 000000625 INF: FPGA: Recv ZSGSRD 29317
17-03-18 04:09:59.274 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:59.274 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:59.274 -07 000000611 INF: FPGA: Recv ZSGSRD 29308
17-03-18 04:09:59.284 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:59.284 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:59.284 -07 000000437 INF: FPGA: Recv ZSGSRD 29323
17-03-18 04:09:59.294 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:59.294 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:59.294 -07 000000512 INF: FPGA: Recv ZSGSRD 29318
17-03-18 04:09:59.304 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:59.304 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:59.304 -07 000000447 INF: FPGA: Recv ZSGSRD 29316
17-03-18 04:09:59.314 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:59.314 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:59.314 -07 000000618 INF: FPGA: Recv ZSGSRD 29320
17-03-18 04:09:59.324 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:59.324 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:59.324 -07 000000479 INF: FPGA: Recv ZSGSRD 29312
17-03-18 04:09:59.334 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:59.334 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:09:59.334 -07 000000501 INF: FPGA: Recv ZSGSRD 29323
17-03-18 04:09:59.344 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:59.344 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:09:59.344 -07 000000611 INF: FPGA: Recv ZPIEZORD 24758
17-03-18 04:09:59.354 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:09:59.354 -07 000000610 INF: Z Motor: Piezo is near 32.9 V (nominally 0 to 100 V), expect near 42.9 V, since DAC is at 4.289 V. Piezo Error = -10.0 V.
17-03-18 04:09:59.354 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.7 um, Read 10 ADC samples: Avg = 29318 (-127.9 uncal um), Error = 0.8 uncal um, Median = 29318 (-127.9 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 29308 (-127.8 uncal um), Max = 29323 (-127.9 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-18 04:09:59.354 -07 000000610 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29318, posNoise = 5, negNoise = 10
17-03-18 04:09:59.354 -07 000000610 INF: Z Motor: After move to -0.128656, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:09:59.354 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-18 04:09:59.354 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:09:59.354 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:09:59.354 -07 000000625 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:09:59.354 -07 000000455 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:09:59.354 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:09:59.354 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:09:59.354 -07 000000012 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:09:59.354 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:09:59.354 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:09:59.354 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:09:59.364 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:09:59.364 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:09:59.364 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-18 04:09:59.364 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:09:59.364 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-18 04:09:59.364 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:09:59.374 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 14 ms.
17-03-18 04:09:59.374 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 04:09:59.384 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 04:09:59.384 -07 000000012 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 04:09:59.384 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 415 415 200 200 28282 150\n [Camera]
17-03-18 04:09:59.584 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP turning red on 195
17-03-18 04:09:59.994 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 607
17-03-18 04:09:59.994 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 607
17-03-18 04:09:59.994 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:09:59.994 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:09:59.994 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 04:10:00.004 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 607
17-03-18 04:10:00.004 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 607
17-03-18 04:10:00.004 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:10:00.004 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:10:00.004 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start.
17-03-18 04:10:00.194 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28282 800
17-03-18 04:10:00.344 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP turning grn on 950
17-03-18 04:10:00.384 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 377 ms.
17-03-18 04:10:00.384 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-18 04:10:00.384 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:10:00.384 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 380 ms.
17-03-18 04:10:00.384 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-18 04:10:00.384 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:10:00.384 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:10:00.384 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 04:10:00.384 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-18 04:10:00.394 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-18 04:10:00.544 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1150
17-03-18 04:10:00.544 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1150
17-03-18 04:10:00.544 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:10:00.544 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:10:00.544 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) start.
17-03-18 04:10:00.544 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1150
17-03-18 04:10:00.544 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1150
17-03-18 04:10:00.544 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:10:00.544 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:10:00.544 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 04:10:00.734 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP 1343
17-03-18 04:10:00.734 -07 000000447 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:10:00.734 -07 000000610 INF: FPGA: 'CAMDBLSNAP 415 415 200 200 28282 150' command took 2 ms to send, 1345 ms to get response, and 1352 ms overall
17-03-18 04:10:00.734 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 04:10:00.734 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 16 at Y-position 71.51904296875, Z-Position -0.128668403583283. ------
17-03-18 04:10:00.744 -07 000000012 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:10:00.744 -07 000000444 INF: Y Motor: MoveYZ optimized starting. Moving Y to 72.3626 mm, moving Z to -0.13501 mm
17-03-18 04:10:00.744 -07 000000444 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:10:00.744 -07 000000447 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:10:00.744 -07 000000438 INF: Y Motor: Entering MoveAbsStepped (target = 115780 steps, sync = True, waitForSettling = True)
17-03-18 04:10:00.744 -07 000000438 INF: Y Motor: Moving to 72.3626 mm, started at 71.5190 mm, delta = 0.8436 mm
17-03-18 04:10:00.744 -07 000000608 INF: Z Motor: Entering MoveAbsStepped (DAC = 29492, sync = True, waitForSettling = False)
17-03-18 04:10:00.744 -07 000000608 INF: Z Motor: Moving to -0.135006 mm, started at -0.128668 mm, distance = -6.34 um
17-03-18 04:10:00.754 -07 000000012 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:10:00.754 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:10:00.754 -07 000000590 INF: FPGA: Recv YRDPOS 146472
17-03-18 04:10:00.764 -07 000000608 INF: FPGA: Xmit ZDACW 29492\n [Z Motor]
17-03-18 04:10:00.764 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-18 04:10:00.764 -07 000000438 INF: Y Motor: Encoder = 146472 = motor step 114431.3 = 71.5195 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:10:00.764 -07 000000437 INF: FPGA: Recv ZDACW
17-03-18 04:10:00.764 -07 000000438 INF: Y Motor: Last commanded position = 71.5326 mm (114452.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:10:00.764 -07 000000438 INF: Y Motor: Moving 1349 steps-28
17-03-18 04:10:00.774 -07 000000608 INF: FPGA: 'ZDACW 29492' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-18 04:10:00.774 -07 000000012 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:10:00.784 -07 000000608 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:10:00.784 -07 000000480 INF: FPGA: Recv ZDACR 29492
17-03-18 04:10:00.794 -07 000000608 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 04:10:00.794 -07 000000438 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:10:00.794 -07 000000608 INF: Z Motor: MoveAbsStepped took 46 ms (did NOT wait for settling yet))
17-03-18 04:10:00.944 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 395 ms.
17-03-18 04:10:00.944 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 04:10:00.944 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:10:00.944 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) end. Duration was 399 ms.
17-03-18 04:10:00.944 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 04:10:00.944 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:10:00.944 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:10:00.944 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 04:10:00.944 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-18 04:10:00.954 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 406 ms.
17-03-18 04:10:00.974 -07 000000561 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:10:00.974 -07 000000012 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 222 ms overall
17-03-18 04:10:01.164 -07 000000455 INF: FPGA: Recv YMVTILE
17-03-18 04:10:01.164 -07 000000438 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 400 ms overall
17-03-18 04:10:01.214 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:10:01.224 -07 000000608 INF: FPGA: Recv YRDPOS 148172
17-03-18 04:10:01.224 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 04:10:01.224 -07 000000438 INF: Y Motor: Encoder = 148172 = motor step 115759.4 = 72.3496 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:10:01.224 -07 000000438 INF: Y Motor: Position error before settling (table move) = -27 encoder counts (-0.013 mm)
17-03-18 04:10:01.224 -07 000000438 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 400 ms, distance = 0.844 mm, average velocity = 2.109 mm/sec
17-03-18 04:10:01.644 -07 000000474 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:10:01.644 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 120. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1718, R2=1787, Total=3505. Warn if over 250 bubbles per interval.
17-03-18 04:10:02.174 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:10:02.174 -07 000000626 INF: FPGA: Recv YRDPOS 148172
17-03-18 04:10:02.184 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:10:02.184 -07 000000438 INF: Y Motor: Encoder = 148172 = motor step 115759.4 = 72.3496 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:10:02.214 -07 000000438 INF: Y Motor: After move to 72.362610, error = -0.013000, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:10:02.214 -07 000000438 INF: Y Motor: Position error after settling (table move) = -27 encoder counts (-0.013 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:10:02.214 -07 000000438 INF: Y Motor: Moved to 72.3496 after 1467 ms (table move)
17-03-18 04:10:02.214 -07 000000444 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135006 mm (DAC = 29492)
17-03-18 04:10:02.214 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:10:02.214 -07 000000479 INF: FPGA: Recv ZSGSRD 30306
17-03-18 04:10:02.224 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 04:10:02.224 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:10:02.224 -07 000000438 INF: FPGA: Recv ZSGSRD 30301
17-03-18 04:10:02.234 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:10:02.234 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:10:02.234 -07 000000474 INF: FPGA: Recv ZSGSRD 30302
17-03-18 04:10:02.244 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:10:02.244 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:10:02.244 -07 000000438 INF: FPGA: Recv ZSGSRD 30308
17-03-18 04:10:02.254 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:10:02.254 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:10:02.254 -07 000000455 INF: FPGA: Recv ZSGSRD 30306
17-03-18 04:10:02.264 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 04:10:02.264 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:10:02.264 -07 000000479 INF: FPGA: Recv ZSGSRD 30298
17-03-18 04:10:02.274 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:10:02.284 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:10:02.284 -07 000000512 INF: FPGA: Recv ZSGSRD 30305
17-03-18 04:10:02.294 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 04:10:02.294 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:10:02.294 -07 000000012 INF: FPGA: Recv ZSGSRD 30302
17-03-18 04:10:02.304 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:10:02.304 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:10:02.304 -07 000000608 INF: FPGA: Recv ZSGSRD 30304
17-03-18 04:10:02.314 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:10:02.314 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:10:02.314 -07 000000447 INF: FPGA: Recv ZSGSRD 30309
17-03-18 04:10:02.324 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:10:02.324 -07 000000444 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:10:02.324 -07 000000611 INF: FPGA: Recv ZPIEZORD 26072
17-03-18 04:10:02.334 -07 000000444 INF: FPGA: 'ZPIEZORD' command took 3 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:10:02.334 -07 000000444 INF: Z Motor: Piezo is near 35.7 V (nominally 0 to 100 V), expect near 45.0 V, since DAC is at 4.500 V. Piezo Error = -9.3 V.
17-03-18 04:10:02.334 -07 000000444 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.0 um, Read 10 ADC samples: Avg = 30304 (-134.2 uncal um), Error = 0.8 uncal um, Median = 30304 (-134.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 30298 (-134.2 uncal um), Max = 30309 (-134.2 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 04:10:02.334 -07 000000444 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30304, posNoise = 5, negNoise = 6
17-03-18 04:10:02.334 -07 000000444 INF: Z Motor: After move to -0.135006, error = 0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:10:02.334 -07 000000444 INF: Z Motor: Settle wait time = 1470 ms, measure time = 117 ms (allowed 150 ms), total time = 1587 ms
17-03-18 04:10:02.334 -07 000000444 INF: Z Motor: Waiting extra 33 ms after reading position to reach expected total of 150 ms
17-03-18 04:10:02.374 -07 000000444 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1629 ms
17-03-18 04:10:02.374 -07 000000444 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:10:02.374 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:10:02.374 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:10:02.374 -07 000000579 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:10:02.374 -07 000000012 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:10:02.374 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:10:02.374 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:10:02.384 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:10:02.384 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:10:02.384 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 04:10:02.384 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:10:02.394 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 04:10:02.394 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-18 04:10:02.394 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:10:02.434 -07 000000438 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:10:02.594 -07 000000487 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 121, FrontChillerTemperature: 4.02213,
17-03-18 04:10:02.734 -07 000000625 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:10:02.734 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:10:02.734 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:10:02.734 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1201016592, 0x0, 559484976) start.
17-03-18 04:10:02.774 -07 000000012 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:10:02.774 -07 000000480 INF: FPGA: Recv CAMSNAP
17-03-18 04:10:02.774 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 378 ms to get response, and 384 ms overall
17-03-18 04:10:02.854 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1201016592, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 04:10:02.854 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:10:02.854 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 04:10:02.854 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 04:10:02.874 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:10:02.874 -07 000000437 INF: Autofocus start
17-03-18 04:10:02.874 -07 000000437 INF: MeasureProfile start
17-03-18 04:10:02.874 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:10:02.884 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 04:10:02.884 -07 000000512 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:10:02.884 -07 000000437 INF: MeasureProfile done
17-03-18 04:10:02.884 -07 000000437 INF: X=-16  Z correction [um]=-0.08128808
17-03-18 04:10:02.884 -07 000000437 INF: Autofocus finished
17-03-18 04:10:03.084 -07 000000012 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:10:03.084 -07 000000512 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 204 ms overall
17-03-18 04:10:03.094 -07 000000610 INF: ------------ Scan Snapping tile 16 at Y-position 72.349609375, Z-position -0.135002676755059. ----------
17-03-18 04:10:03.094 -07 000000610 INF: Cycle	121	Tile	16	Exposure Settings		A	415	G	200	T	200	C	415
17-03-18 04:10:03.094 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27987, sync = True, waitForSettling = True)
17-03-18 04:10:03.094 -07 000000610 INF: Z Motor: Moving to -0.128116 mm, started at -0.135003 mm, distance = 6.89 um
17-03-18 04:10:03.094 -07 000000610 INF: FPGA: Xmit ZDACW 27987\n [Z Motor]
17-03-18 04:10:03.094 -07 000000487 INF: FPGA: Recv ZDACW
17-03-18 04:10:03.104 -07 000000610 INF: FPGA: 'ZDACW 27987' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 04:10:03.104 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:10:03.104 -07 000000618 INF: FPGA: Recv ZDACR 27987
17-03-18 04:10:03.114 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:10:03.114 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:10:03.264 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:10:03.264 -07 000000501 INF: FPGA: Recv ZSGSRD 29221
17-03-18 04:10:03.274 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:10:03.274 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:10:03.274 -07 000000618 INF: FPGA: Recv ZSGSRD 29238
17-03-18 04:10:03.284 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:10:03.284 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:10:03.284 -07 000000512 INF: FPGA: Recv ZSGSRD 29235
17-03-18 04:10:03.294 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:10:03.294 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:10:03.294 -07 000000579 INF: FPGA: Recv ZSGSRD 29234
17-03-18 04:10:03.304 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:10:03.304 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:10:03.304 -07 000000611 INF: FPGA: Recv ZSGSRD 29232
17-03-18 04:10:03.314 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:10:03.314 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:10:03.314 -07 000000501 INF: FPGA: Recv ZSGSRD 29232
17-03-18 04:10:03.324 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:10:03.324 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:10:03.324 -07 000000455 INF: FPGA: Recv ZSGSRD 29239
17-03-18 04:10:03.334 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:10:03.334 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:10:03.334 -07 000000487 INF: FPGA: Recv ZSGSRD 29232
17-03-18 04:10:03.344 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:10:03.344 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:10:03.344 -07 000000608 INF: FPGA: Recv ZSGSRD 29238
17-03-18 04:10:03.354 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:10:03.354 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:10:03.354 -07 000000012 INF: FPGA: Recv ZSGSRD 29232
17-03-18 04:10:03.364 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:10:03.364 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:10:03.364 -07 000000444 INF: FPGA: Recv ZPIEZORD 24648
17-03-18 04:10:03.374 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:10:03.374 -07 000000610 INF: Z Motor: Piezo is near 32.7 V (nominally 0 to 100 V), expect near 42.7 V, since DAC is at 4.271 V. Piezo Error = -10.1 V.
17-03-18 04:10:03.374 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.1 um, Read 10 ADC samples: Avg = 29233 (-127.3 uncal um), Error = 0.8 uncal um, Median = 29233 (-127.3 uncal um), StdDev = 5 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 29221 (-127.3 uncal um), Max = 29239 (-127.4 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 12 (0.1 uncal um)
17-03-18 04:10:03.374 -07 000000610 INF: Z Motor: ADC noise = 12, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29233, posNoise = 6, negNoise = 12
17-03-18 04:10:03.374 -07 000000610 INF: Z Motor: After move to -0.128116, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:10:03.374 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-18 04:10:03.374 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:10:03.374 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:10:03.374 -07 000000480 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:10:03.374 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:10:03.374 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:10:03.374 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:10:03.374 -07 000000447 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:10:03.374 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:10:03.374 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 04:10:03.374 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:10:03.374 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:10:03.374 -07 000000447 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:10:03.384 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 04:10:03.384 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:10:03.384 -07 000000447 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 04:10:03.384 -07 000000447 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:10:03.394 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 04:10:03.394 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 04:10:03.394 -07 000000447 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-18 04:10:03.394 -07 000000447 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 04:10:03.394 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 415 415 200 200 28163 150\n [Camera]
17-03-18 04:10:03.594 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:10:04.004 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 607
17-03-18 04:10:04.004 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 607
17-03-18 04:10:04.004 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:10:04.004 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:10:04.014 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 1428998304, 0x0, 391868352) start.
17-03-18 04:10:04.014 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 607
17-03-18 04:10:04.014 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 607
17-03-18 04:10:04.014 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:10:04.014 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:10:04.014 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 1464420568, 0x0, 418435064) start.
17-03-18 04:10:04.204 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28163 800
17-03-18 04:10:04.354 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP turning grn on 950
17-03-18 04:10:04.404 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 1428998304, 0x0, 391868352) end. Duration was 397 ms.
17-03-18 04:10:04.404 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 04:10:04.404 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:10:04.414 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:10:04.414 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 04:10:04.414 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 1464420568, 0x0, 418435064) end. Duration was 398 ms.
17-03-18 04:10:04.414 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 04:10:04.414 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:10:04.414 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:10:04.424 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-18 04:10:04.554 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1150
17-03-18 04:10:04.554 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1150
17-03-18 04:10:04.554 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:10:04.554 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:10:04.554 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-18 04:10:04.554 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1150
17-03-18 04:10:04.554 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1150
17-03-18 04:10:04.554 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:10:04.554 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:10:04.554 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-18 04:10:04.744 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP 1343
17-03-18 04:10:04.744 -07 000000438 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:10:04.744 -07 000000610 INF: FPGA: 'CAMDBLSNAP 415 415 200 200 28163 150' command took 2 ms to send, 1343 ms to get response, and 1349 ms overall
17-03-18 04:10:04.744 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 04:10:04.744 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 17 at Y-position 72.349609375, Z-Position -0.128122345551233. ------
17-03-18 04:10:04.744 -07 000000012 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:10:04.744 -07 000000480 INF: Y Motor: MoveYZ optimized starting. Moving Y to 73.1926 mm, moving Z to -0.13467 mm
17-03-18 04:10:04.744 -07 000000480 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:10:04.754 -07 000000625 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:10:04.754 -07 000000012 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 04:10:04.754 -07 000000012 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:10:04.754 -07 000000618 INF: Y Motor: Entering MoveAbsStepped (target = 117108 steps, sync = True, waitForSettling = True)
17-03-18 04:10:04.754 -07 000000618 INF: Y Motor: Moving to 73.1926 mm, started at 72.3496 mm, delta = 0.8430 mm
17-03-18 04:10:04.754 -07 000000479 INF: Z Motor: Entering MoveAbsStepped (DAC = 29419, sync = True, waitForSettling = False)
17-03-18 04:10:04.754 -07 000000479 INF: Z Motor: Moving to -0.134672 mm, started at -0.128122 mm, distance = -6.55 um
17-03-18 04:10:04.764 -07 000000479 INF: FPGA: Xmit ZDACW 29419\n [Z Motor]
17-03-18 04:10:04.764 -07 000000438 INF: FPGA: Recv ZDACW
17-03-18 04:10:04.774 -07 000000479 INF: FPGA: 'ZDACW 29419' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-18 04:10:04.774 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:10:04.774 -07 000000579 INF: FPGA: Recv YRDPOS 148173
17-03-18 04:10:04.784 -07 000000479 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:10:04.784 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-18 04:10:04.784 -07 000000618 INF: Y Motor: Encoder = 148173 = motor step 115760.2 = 72.3501 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:10:04.784 -07 000000437 INF: FPGA: Recv ZDACR 29419
17-03-18 04:10:04.784 -07 000000618 INF: Y Motor: Last commanded position = 72.3626 mm (115780.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:10:04.784 -07 000000618 INF: Y Motor: Moving 1348 steps-27
17-03-18 04:10:04.794 -07 000000479 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 04:10:04.794 -07 000000479 INF: Z Motor: MoveAbsStepped took 35 ms (did NOT wait for settling yet))
17-03-18 04:10:04.794 -07 000000618 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:10:04.944 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 389 ms.
17-03-18 04:10:04.944 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-18 04:10:04.944 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:10:04.944 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 395 ms.
17-03-18 04:10:04.944 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 04:10:04.944 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:10:04.944 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:10:04.954 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 04:10:04.954 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 04:10:04.954 -07 000000444 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:10:04.954 -07 000000012 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 197 ms to get response, and 204 ms overall
17-03-18 04:10:04.954 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-18 04:10:05.164 -07 000000561 INF: FPGA: Recv YMVTILE
17-03-18 04:10:05.164 -07 000000618 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 380 ms overall
17-03-18 04:10:05.214 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:10:05.214 -07 000000455 INF: FPGA: Recv YRDPOS 149865
17-03-18 04:10:05.224 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 04:10:05.224 -07 000000618 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:10:05.224 -07 000000618 INF: Y Motor: Position error before settling (table move) = -33 encoder counts (-0.016 mm)
17-03-18 04:10:05.224 -07 000000618 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 380 ms, distance = 0.843 mm, average velocity = 2.218 mm/sec
17-03-18 04:10:06.174 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:10:06.174 -07 000000437 INF: FPGA: Recv YRDPOS 149865
17-03-18 04:10:06.184 -07 000000618 INF: FPGA: 'YRDPOS' command took 1 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:10:06.184 -07 000000618 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:10:06.214 -07 000000618 INF: Y Motor: After move to 73.192604, error = -0.016335, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:10:06.214 -07 000000618 INF: Y Motor: Position error after settling (table move) = -33 encoder counts (-0.016 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:10:06.214 -07 000000618 INF: Y Motor: Moved to 73.1763 after 1456 ms (table move)
17-03-18 04:10:06.214 -07 000000480 INF: Z Motor: EndOfMoveAbsStepped: target = -0.134672 mm (DAC = 29419)
17-03-18 04:10:06.214 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:10:06.214 -07 000000012 INF: FPGA: Recv ZSGSRD 30255
17-03-18 04:10:06.224 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 04:10:06.224 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:10:06.224 -07 000000585 INF: FPGA: Recv ZSGSRD 30248
17-03-18 04:10:06.234 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:10:06.234 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:10:06.234 -07 000000447 INF: FPGA: Recv ZSGSRD 30259
17-03-18 04:10:06.244 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:10:06.244 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:10:06.244 -07 000000437 INF: FPGA: Recv ZSGSRD 30257
17-03-18 04:10:06.254 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:10:06.254 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:10:06.254 -07 000000479 INF: FPGA: Recv ZSGSRD 30255
17-03-18 04:10:06.264 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:10:06.264 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:10:06.264 -07 000000625 INF: FPGA: Recv ZSGSRD 30257
17-03-18 04:10:06.274 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:10:06.274 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:10:06.274 -07 000000608 INF: FPGA: Recv ZSGSRD 30254
17-03-18 04:10:06.284 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:10:06.284 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:10:06.284 -07 000000501 INF: FPGA: Recv ZSGSRD 30255
17-03-18 04:10:06.294 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:10:06.294 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:10:06.294 -07 000000012 INF: FPGA: Recv ZSGSRD 30249
17-03-18 04:10:06.304 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:10:06.304 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:10:06.304 -07 000000626 INF: FPGA: Recv ZSGSRD 30255
17-03-18 04:10:06.314 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:10:06.314 -07 000000480 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:10:06.314 -07 000000447 INF: FPGA: Recv ZPIEZORD 26021
17-03-18 04:10:06.324 -07 000000480 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:10:06.324 -07 000000480 INF: Z Motor: Piezo is near 35.6 V (nominally 0 to 100 V), expect near 44.9 V, since DAC is at 4.489 V. Piezo Error = -9.3 V.
17-03-18 04:10:06.324 -07 000000480 INF: Z Motor: ReadAdcAverage: Commanded Z = -134.7 um, Read 10 ADC samples: Avg = 30254 (-133.9 uncal um), Error = 0.8 uncal um, Median = 30255 (-133.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 30248 (-133.9 uncal um), Max = 30259 (-133.9 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 04:10:06.324 -07 000000480 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30254, posNoise = 5, negNoise = 6
17-03-18 04:10:06.324 -07 000000480 INF: Z Motor: After move to -0.134672, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:10:06.324 -07 000000480 INF: Z Motor: Settle wait time = 1459 ms, measure time = 107 ms (allowed 150 ms), total time = 1566 ms
17-03-18 04:10:06.324 -07 000000480 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-18 04:10:06.374 -07 000000480 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1621 ms
17-03-18 04:10:06.374 -07 000000480 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:10:06.374 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:10:06.374 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:10:06.374 -07 000000585 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:10:06.374 -07 000000474 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:10:06.374 -07 000000455 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:10:06.374 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:10:06.374 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 04:10:06.374 -07 000000455 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:10:06.384 -07 000000455 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 04:10:06.384 -07 000000455 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:10:06.394 -07 000000455 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-18 04:10:06.394 -07 000000455 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 13 ms.
17-03-18 04:10:06.394 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:10:06.444 -07 000000012 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:10:06.644 -07 000000437 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:10:06.644 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 120. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1718, R2=1787, Total=3505. Warn if over 250 bubbles per interval.
17-03-18 04:10:06.734 -07 000000618 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:10:06.734 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:10:06.744 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:10:06.744 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2218332320, 0x0, 559484976) start.
17-03-18 04:10:06.774 -07 000000444 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:10:06.774 -07 000000438 INF: FPGA: Recv CAMSNAP
17-03-18 04:10:06.774 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 379 ms to get response, and 384 ms overall
17-03-18 04:10:06.854 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2218332320, 0x0, 559484976) end. Duration was 117 ms.
17-03-18 04:10:06.854 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:10:06.854 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 04:10:06.854 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-18 04:10:06.874 -07 000000585 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:10:06.874 -07 000000625 INF: Autofocus start
17-03-18 04:10:06.874 -07 000000625 INF: MeasureProfile start
17-03-18 04:10:06.874 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:10:06.884 -07 000000585 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:10:06.884 -07 000000585 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:10:06.884 -07 000000625 INF: MeasureProfile done
17-03-18 04:10:06.884 -07 000000625 INF: X=16  Z correction [um]=0.0530179
17-03-18 04:10:06.884 -07 000000625 INF: Autofocus finished
17-03-18 04:10:07.084 -07 000000447 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:10:07.084 -07 000000585 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 196 ms to get response, and 205 ms overall
17-03-18 04:10:07.084 -07 000000610 INF: ------------ Scan Snapping tile 17 at Y-position 73.17626953125, Z-position -0.134681466147971. ----------
17-03-18 04:10:07.094 -07 000000610 INF: Cycle	121	Tile	17	Exposure Settings		A	415	G	200	T	200	C	415
17-03-18 04:10:07.094 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27943, sync = True, waitForSettling = True)
17-03-18 04:10:07.094 -07 000000610 INF: Z Motor: Moving to -0.127915 mm, started at -0.134681 mm, distance = 6.77 um
17-03-18 04:10:07.094 -07 000000610 INF: FPGA: Xmit ZDACW 27943\n [Z Motor]
17-03-18 04:10:07.094 -07 000000512 INF: FPGA: Recv ZDACW
17-03-18 04:10:07.104 -07 000000610 INF: FPGA: 'ZDACW 27943' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 04:10:07.104 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:10:07.104 -07 000000447 INF: FPGA: Recv ZDACR 27943
17-03-18 04:10:07.114 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:10:07.114 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:10:07.264 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:10:07.264 -07 000000438 INF: FPGA: Recv ZSGSRD 29203
17-03-18 04:10:07.274 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:10:07.274 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:10:07.274 -07 000000626 INF: FPGA: Recv ZSGSRD 29202
17-03-18 04:10:07.284 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:10:07.284 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:10:07.284 -07 000000480 INF: FPGA: Recv ZSGSRD 29199
17-03-18 04:10:07.294 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:10:07.294 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:10:07.294 -07 000000512 INF: FPGA: Recv ZSGSRD 29201
17-03-18 04:10:07.304 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:10:07.304 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:10:07.304 -07 000000625 INF: FPGA: Recv ZSGSRD 29208
17-03-18 04:10:07.314 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:10:07.314 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:10:07.314 -07 000000487 INF: FPGA: Recv ZSGSRD 29200
17-03-18 04:10:07.324 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:10:07.324 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:10:07.324 -07 000000512 INF: FPGA: Recv ZSGSRD 29206
17-03-18 04:10:07.334 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:10:07.334 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:10:07.334 -07 000000480 INF: FPGA: Recv ZSGSRD 29204
17-03-18 04:10:07.344 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:10:07.344 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:10:07.344 -07 000000444 INF: FPGA: Recv ZSGSRD 29202
17-03-18 04:10:07.354 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:10:07.354 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:10:07.354 -07 000000585 INF: FPGA: Recv ZSGSRD 29204
17-03-18 04:10:07.364 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:10:07.364 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:10:07.364 -07 000000474 INF: FPGA: Recv ZPIEZORD 24618
17-03-18 04:10:07.374 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:10:07.374 -07 000000610 INF: Z Motor: Piezo is near 32.6 V (nominally 0 to 100 V), expect near 42.6 V, since DAC is at 4.264 V. Piezo Error = -10.0 V.
17-03-18 04:10:07.374 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -127.9 um, Read 10 ADC samples: Avg = 29203 (-127.2 uncal um), Error = 0.8 uncal um, Median = 29202 (-127.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29199 (-127.1 uncal um), Max = 29208 (-127.2 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 04:10:07.374 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29203, posNoise = 5, negNoise = 4
17-03-18 04:10:07.374 -07 000000610 INF: Z Motor: After move to -0.127915, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:10:07.374 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 04:10:07.374 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:10:07.374 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:10:07.374 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:10:07.374 -07 000000447 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:10:07.374 -07 000000579 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:10:07.374 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:10:07.374 -07 000000590 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:10:07.374 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:10:07.374 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 04:10:07.374 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:10:07.374 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 04:10:07.374 -07 000000590 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:10:07.374 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 04:10:07.374 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:10:07.384 -07 000000590 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 04:10:07.384 -07 000000590 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:10:07.384 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 04:10:07.384 -07 000000579 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 04:10:07.394 -07 000000590 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 04:10:07.394 -07 000000590 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 04:10:07.394 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 415 415 200 200 28119 150\n [Camera]
17-03-18 04:10:07.594 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:10:07.954 -07 000000608 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 121, FrontChillerTemperature: 4.005817,
17-03-18 04:10:08.014 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 607
17-03-18 04:10:08.014 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 607
17-03-18 04:10:08.014 -07 000000611 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:10:08.014 -07 000000611 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:10:08.014 -07 000000611 INF: Camera: sBCa_ReadImage(785074288, 2233008400, 0x0, 391868352) start.
17-03-18 04:10:08.014 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 607
17-03-18 04:10:08.014 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 607
17-03-18 04:10:08.014 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:10:08.014 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:10:08.014 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-18 04:10:08.204 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28119 800
17-03-18 04:10:08.354 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP turning grn on 950
17-03-18 04:10:08.384 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 373 ms.
17-03-18 04:10:08.384 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-18 04:10:08.384 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:10:08.394 -07 000000611 INF: Camera: sBCa_ReadImage(785074288, 2233008400, 0x0, 391868352) end. Duration was 378 ms.
17-03-18 04:10:08.394 -07 000000611 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-18 04:10:08.394 -07 000000611 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:10:08.394 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:10:08.394 -07 000000611 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:10:08.394 -07 000000611 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-18 04:10:08.394 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-18 04:10:08.554 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1150
17-03-18 04:10:08.554 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1150
17-03-18 04:10:08.554 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:10:08.554 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:10:08.554 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) start.
17-03-18 04:10:08.554 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1150
17-03-18 04:10:08.554 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1150
17-03-18 04:10:08.554 -07 000000585 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:10:08.554 -07 000000585 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:10:08.554 -07 000000585 INF: Camera: sBCa_ReadImage(785074704, 2503642840, 0x0, 418435064) start.
17-03-18 04:10:08.744 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP 1342
17-03-18 04:10:08.744 -07 000000611 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:10:08.744 -07 000000610 INF: FPGA: 'CAMDBLSNAP 415 415 200 200 28119 150' command took 2 ms to send, 1345 ms to get response, and 1350 ms overall
17-03-18 04:10:08.744 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 04:10:08.744 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 18 at Y-position 73.17626953125, Z-Position -0.12792961918698. ------
17-03-18 04:10:08.754 -07 000000012 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:10:08.754 -07 000000479 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.0226 mm, moving Z to -0.13381 mm
17-03-18 04:10:08.754 -07 000000479 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:10:08.754 -07 000000444 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:10:08.754 -07 000000590 INF: Y Motor: Entering MoveAbsStepped (target = 118436 steps, sync = True, waitForSettling = True)
17-03-18 04:10:08.754 -07 000000590 INF: Y Motor: Moving to 74.0226 mm, started at 73.1763 mm, delta = 0.8463 mm
17-03-18 04:10:08.754 -07 000000561 INF: Z Motor: Entering MoveAbsStepped (DAC = 29232, sync = True, waitForSettling = False)
17-03-18 04:10:08.754 -07 000000561 INF: Z Motor: Moving to -0.133816 mm, started at -0.127930 mm, distance = -5.89 um
17-03-18 04:10:08.764 -07 000000012 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:10:08.764 -07 000000012 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:10:08.774 -07 000000590 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:10:08.774 -07 000000444 INF: FPGA: Recv YRDPOS 149865
17-03-18 04:10:08.784 -07 000000561 INF: FPGA: Xmit ZDACW 29232\n [Z Motor]
17-03-18 04:10:08.784 -07 000000590 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-18 04:10:08.784 -07 000000590 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:10:08.784 -07 000000590 INF: Y Motor: Last commanded position = 73.1926 mm (117108.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:10:08.784 -07 000000590 INF: Y Motor: Moving 1354 steps-33
17-03-18 04:10:08.784 -07 000000512 INF: FPGA: Recv ZDACW
17-03-18 04:10:08.794 -07 000000561 INF: FPGA: 'ZDACW 29232' command took 0 ms to send, 0 ms to get response, and 35 ms overall
17-03-18 04:10:08.794 -07 000000590 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:10:08.804 -07 000000561 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:10:08.804 -07 000000480 INF: FPGA: Recv ZDACR 29232
17-03-18 04:10:08.814 -07 000000561 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-18 04:10:08.814 -07 000000561 INF: Z Motor: MoveAbsStepped took 55 ms (did NOT wait for settling yet))
17-03-18 04:10:08.954 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) end. Duration was 399 ms.
17-03-18 04:10:08.954 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 04:10:08.954 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:10:08.954 -07 000000585 INF: Camera: sBCa_ReadImage(785074704, 2503642840, 0x0, 418435064) end. Duration was 397 ms.
17-03-18 04:10:08.954 -07 000000585 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 04:10:08.954 -07 000000585 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:10:08.954 -07 000000585 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:10:08.964 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 04:10:08.964 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 408 ms.
17-03-18 04:10:08.964 -07 000000455 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:10:08.964 -07 000000012 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 203 ms overall
17-03-18 04:10:08.964 -07 000000585 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-18 04:10:09.174 -07 000000480 INF: FPGA: Recv YMVTILE
17-03-18 04:10:09.174 -07 000000590 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 370 ms to get response, and 389 ms overall
17-03-18 04:10:09.214 -07 000000590 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:10:09.214 -07 000000501 INF: FPGA: Recv YRDPOS 151569
17-03-18 04:10:09.224 -07 000000590 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 04:10:09.224 -07 000000590 INF: Y Motor: Encoder = 151569 = motor step 118413.3 = 74.0083 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:10:09.224 -07 000000590 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-18 04:10:09.224 -07 000000590 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 389 ms, distance = 0.846 mm, average velocity = 2.176 mm/sec
17-03-18 04:10:10.174 -07 000000590 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:10:10.174 -07 000000618 INF: FPGA: Recv YRDPOS 151569
17-03-18 04:10:10.184 -07 000000590 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:10:10.184 -07 000000590 INF: Y Motor: Encoder = 151569 = motor step 118413.3 = 74.0083 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:10:10.204 -07 000000590 INF: Y Motor: After move to 74.022606, error = -0.014305, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:10:10.204 -07 000000590 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:10:10.204 -07 000000590 INF: Y Motor: Moved to 74.0083 after 1451 ms (table move)
17-03-18 04:10:10.204 -07 000000479 INF: Z Motor: EndOfMoveAbsStepped: target = -0.133816 mm (DAC = 29232)
17-03-18 04:10:10.204 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:10:10.214 -07 000000625 INF: FPGA: Recv ZSGSRD 30122
17-03-18 04:10:10.214 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 04:10:10.214 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:10:10.214 -07 000000501 INF: FPGA: Recv ZSGSRD 30127
17-03-18 04:10:10.224 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 04:10:10.224 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:10:10.224 -07 000000512 INF: FPGA: Recv ZSGSRD 30121
17-03-18 04:10:10.234 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:10:10.234 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:10:10.234 -07 000000455 INF: FPGA: Recv ZSGSRD 30114
17-03-18 04:10:10.244 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:10:10.244 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:10:10.244 -07 000000608 INF: FPGA: Recv ZSGSRD 30121
17-03-18 04:10:10.254 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:10:10.254 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:10:10.254 -07 000000437 INF: FPGA: Recv ZSGSRD 30122
17-03-18 04:10:10.264 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:10:10.264 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:10:10.264 -07 000000474 INF: FPGA: Recv ZSGSRD 30121
17-03-18 04:10:10.274 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:10:10.274 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:10:10.274 -07 000000585 INF: FPGA: Recv ZSGSRD 30120
17-03-18 04:10:10.284 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:10:10.284 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:10:10.284 -07 000000455 INF: FPGA: Recv ZSGSRD 30124
17-03-18 04:10:10.294 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:10:10.294 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:10:10.294 -07 000000579 INF: FPGA: Recv ZSGSRD 30120
17-03-18 04:10:10.304 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:10:10.304 -07 000000479 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:10:10.304 -07 000000626 INF: FPGA: Recv ZPIEZORD 25877
17-03-18 04:10:10.314 -07 000000479 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:10:10.314 -07 000000479 INF: Z Motor: Piezo is near 35.3 V (nominally 0 to 100 V), expect near 44.6 V, since DAC is at 4.461 V. Piezo Error = -9.3 V.
17-03-18 04:10:10.314 -07 000000479 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.8 um, Read 10 ADC samples: Avg = 30121 (-133.0 uncal um), Error = 0.8 uncal um, Median = 30121 (-133.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 30114 (-133.0 uncal um), Max = 30127 (-133.1 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 04:10:10.314 -07 000000479 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30121, posNoise = 6, negNoise = 7
17-03-18 04:10:10.314 -07 000000479 INF: Z Motor: After move to -0.133816, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:10:10.314 -07 000000479 INF: Z Motor: Settle wait time = 1453 ms, measure time = 104 ms (allowed 150 ms), total time = 1557 ms
17-03-18 04:10:10.314 -07 000000479 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-18 04:10:10.364 -07 000000479 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1609 ms
17-03-18 04:10:10.364 -07 000000479 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:10:10.364 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:10:10.364 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:10:10.364 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:10:10.364 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:10:10.364 -07 000000474 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:10:10.364 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:10:10.364 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 04:10:10.364 -07 000000474 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:10:10.374 -07 000000474 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 04:10:10.374 -07 000000474 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:10:10.374 -07 000000474 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 04:10:10.374 -07 000000474 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-18 04:10:10.384 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:10:10.424 -07 000000487 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:10:10.724 -07 000000608 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:10:10.724 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:10:10.724 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:10:10.724 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2268430664, 0x0, 559484976) start.
17-03-18 04:10:10.764 -07 000000474 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:10:10.764 -07 000000625 INF: FPGA: Recv CAMSNAP
17-03-18 04:10:10.764 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 378 ms to get response, and 385 ms overall
17-03-18 04:10:10.844 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2268430664, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 04:10:10.844 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:10:10.844 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 04:10:10.844 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 04:10:10.864 -07 000000444 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:10:10.864 -07 000000611 INF: Autofocus start
17-03-18 04:10:10.864 -07 000000611 INF: MeasureProfile start
17-03-18 04:10:10.864 -07 000000480 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:10:10.874 -07 000000444 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 04:10:10.874 -07 000000444 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:10:10.884 -07 000000611 INF: MeasureProfile done
17-03-18 04:10:10.884 -07 000000611 INF: X=0  Z correction [um]=-0.02394831
17-03-18 04:10:10.884 -07 000000611 INF: Autofocus finished
17-03-18 04:10:11.074 -07 000000487 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:10:11.074 -07 000000444 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 04:10:11.074 -07 000000610 INF: ------------ Scan Snapping tile 18 at Y-position 74.00830078125, Z-position -0.133827045933117. ----------
17-03-18 04:10:11.074 -07 000000610 INF: Cycle	121	Tile	18	Exposure Settings		A	415	G	200	T	200	C	415
17-03-18 04:10:11.084 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27739, sync = True, waitForSettling = True)
17-03-18 04:10:11.084 -07 000000610 INF: Z Motor: Moving to -0.126981 mm, started at -0.133827 mm, distance = 6.85 um
17-03-18 04:10:11.084 -07 000000610 INF: FPGA: Xmit ZDACW 27739\n [Z Motor]
17-03-18 04:10:11.084 -07 000000608 INF: FPGA: Recv ZDACW
17-03-18 04:10:11.094 -07 000000610 INF: FPGA: 'ZDACW 27739' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:10:11.094 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:10:11.094 -07 000000590 INF: FPGA: Recv ZDACR 27739
17-03-18 04:10:11.104 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:10:11.104 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:10:11.254 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:10:11.254 -07 000000479 INF: FPGA: Recv ZSGSRD 29060
17-03-18 04:10:11.264 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:10:11.264 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:10:11.264 -07 000000611 INF: FPGA: Recv ZSGSRD 29060
17-03-18 04:10:11.274 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:10:11.274 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:10:11.274 -07 000000561 INF: FPGA: Recv ZSGSRD 29058
17-03-18 04:10:11.284 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:10:11.284 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:10:11.284 -07 000000611 INF: FPGA: Recv ZSGSRD 29055
17-03-18 04:10:11.294 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:10:11.294 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:10:11.294 -07 000000561 INF: FPGA: Recv ZSGSRD 29058
17-03-18 04:10:11.304 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:10:11.304 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:10:11.304 -07 000000579 INF: FPGA: Recv ZSGSRD 29059
17-03-18 04:10:11.314 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:10:11.314 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:10:11.314 -07 000000437 INF: FPGA: Recv ZSGSRD 29052
17-03-18 04:10:11.324 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:10:11.324 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:10:11.324 -07 000000579 INF: FPGA: Recv ZSGSRD 29052
17-03-18 04:10:11.334 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:10:11.334 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:10:11.334 -07 000000561 INF: FPGA: Recv ZSGSRD 29056
17-03-18 04:10:11.344 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:10:11.344 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:10:11.344 -07 000000625 INF: FPGA: Recv ZSGSRD 29056
17-03-18 04:10:11.354 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:10:11.354 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:10:11.354 -07 000000512 INF: FPGA: Recv ZPIEZORD 24486
17-03-18 04:10:11.364 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:10:11.364 -07 000000610 INF: Z Motor: Piezo is near 32.3 V (nominally 0 to 100 V), expect near 42.3 V, since DAC is at 4.233 V. Piezo Error = -10.0 V.
17-03-18 04:10:11.364 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -127.0 um, Read 10 ADC samples: Avg = 29057 (-126.2 uncal um), Error = 0.8 uncal um, Median = 29057 (-126.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 29052 (-126.2 uncal um), Max = 29060 (-126.2 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 04:10:11.364 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29057, posNoise = 3, negNoise = 5
17-03-18 04:10:11.364 -07 000000610 INF: Z Motor: After move to -0.126981, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:10:11.364 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 04:10:11.364 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:10:11.364 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:10:11.364 -07 000000487 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:10:11.364 -07 000000480 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:10:11.364 -07 000000479 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:10:11.364 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:10:11.364 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:10:11.364 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:10:11.364 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 04:10:11.364 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 04:10:11.364 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:10:11.364 -07 000000479 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:10:11.374 -07 000000479 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-18 04:10:11.374 -07 000000479 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:10:11.374 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-18 04:10:11.374 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:10:11.384 -07 000000479 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 04:10:11.384 -07 000000479 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 04:10:11.384 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-18 04:10:11.384 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 04:10:11.394 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 415 415 200 200 27916 150\n [Camera]
17-03-18 04:10:11.584 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:10:11.644 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:10:11.644 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 120. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1718, R2=1787, Total=3505. Warn if over 250 bubbles per interval.
17-03-18 04:10:12.004 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 607
17-03-18 04:10:12.004 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 607
17-03-18 04:10:12.004 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:10:12.004 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:10:12.004 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) start.
17-03-18 04:10:12.004 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 607
17-03-18 04:10:12.004 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 607
17-03-18 04:10:12.004 -07 000000474 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:10:12.004 -07 000000474 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:10:12.004 -07 000000474 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) start.
17-03-18 04:10:12.194 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 27916 800
17-03-18 04:10:12.344 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning grn on 950
17-03-18 04:10:12.404 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) end. Duration was 394 ms.
17-03-18 04:10:12.404 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 04:10:12.404 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:10:12.404 -07 000000474 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) end. Duration was 395 ms.
17-03-18 04:10:12.404 -07 000000474 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 04:10:12.404 -07 000000474 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:10:12.404 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:10:12.404 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 04:10:12.404 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:10:12.414 -07 000000474 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 406 ms.
17-03-18 04:10:12.544 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1150
17-03-18 04:10:12.544 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1150
17-03-18 04:10:12.544 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:10:12.544 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:10:12.544 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 2620985504, 0x0, 391868352) start.
17-03-18 04:10:12.694 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1150
17-03-18 04:10:12.694 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1150
17-03-18 04:10:12.694 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:10:12.694 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:10:12.694 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-18 04:10:12.734 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP 1342
17-03-18 04:10:12.744 -07 000000561 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:10:12.744 -07 000000610 INF: FPGA: 'CAMDBLSNAP 415 415 200 200 27916 150' command took 2 ms to send, 1340 ms to get response, and 1349 ms overall
17-03-18 04:10:12.744 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 04:10:12.744 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 19 at Y-position 74.00830078125, Z-Position -0.126991684214283. ------
17-03-18 04:10:12.744 -07 000000437 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.8526 mm, moving Z to -0.13325 mm
17-03-18 04:10:12.744 -07 000000437 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 04:10:12.744 -07 000000608 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:10:12.744 -07 000000438 INF: Y Motor: Entering MoveAbsStepped (target = 119764 steps, sync = True, waitForSettling = True)
17-03-18 04:10:12.744 -07 000000438 INF: Y Motor: Moving to 74.8526 mm, started at 74.0083 mm, delta = 0.8443 mm
17-03-18 04:10:12.744 -07 000000480 INF: Z Motor: Entering MoveAbsStepped (DAC = 29108, sync = True, waitForSettling = False)
17-03-18 04:10:12.744 -07 000000480 INF: Z Motor: Moving to -0.133248 mm, started at -0.126992 mm, distance = -6.26 um
17-03-18 04:10:12.744 -07 000000625 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:10:12.754 -07 000000608 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 04:10:12.754 -07 000000480 INF: FPGA: Xmit ZDACW 29108\n [Z Motor]
17-03-18 04:10:12.754 -07 000000444 INF: FPGA: Recv ZDACW
17-03-18 04:10:12.764 -07 000000480 INF: FPGA: 'ZDACW 29108' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:10:12.764 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:10:12.764 -07 000000479 INF: FPGA: Recv YRDPOS 151570
17-03-18 04:10:12.774 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 20 ms overall
17-03-18 04:10:12.774 -07 000000608 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 04:10:12.774 -07 000000438 INF: Y Motor: Encoder = 151570 = motor step 118414.1 = 74.0088 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:10:12.774 -07 000000438 INF: Y Motor: Last commanded position = 74.0226 mm (118436.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 04:10:12.774 -07 000000438 INF: Y Motor: Moving 1350 steps-29
17-03-18 04:10:12.784 -07 000000480 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:10:12.784 -07 000000626 INF: FPGA: Recv ZDACR 29108
17-03-18 04:10:12.794 -07 000000438 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 04:10:12.794 -07 000000480 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 04:10:12.794 -07 000000480 INF: Z Motor: MoveAbsStepped took 40 ms (did NOT wait for settling yet))
17-03-18 04:10:12.964 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 2620985504, 0x0, 391868352) end. Duration was 415 ms.
17-03-18 04:10:12.964 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 415 ms.
17-03-18 04:10:12.964 -07 000000474 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:10:12.974 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 04:10:12.974 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 421 ms.
17-03-18 04:10:12.974 -07 000000479 INF: FPGA: Recv FOCMRRFOC
17-03-18 04:10:12.974 -07 000000608 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 04:10:13.084 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 391 ms.
17-03-18 04:10:13.094 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-18 04:10:13.094 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:10:13.094 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-18 04:10:13.094 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 405 ms.
17-03-18 04:10:13.164 -07 000000579 INF: FPGA: Recv YMVTILE
17-03-18 04:10:13.164 -07 000000438 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 390 ms overall
17-03-18 04:10:13.194 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:10:13.204 -07 000000512 INF: FPGA: Recv YRDPOS 153256
17-03-18 04:10:13.204 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-18 04:10:13.204 -07 000000438 INF: Y Motor: Encoder = 153256 = motor step 119731.3 = 74.8320 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:10:13.204 -07 000000438 INF: Y Motor: Position error before settling (table move) = -42 encoder counts (-0.021 mm)
17-03-18 04:10:13.204 -07 000000438 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 391 ms, distance = 0.844 mm, average velocity = 2.159 mm/sec
17-03-18 04:10:13.314 -07 000000480 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 121, FrontChillerTemperature: 4.011254,
17-03-18 04:10:14.154 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 04:10:14.154 -07 000000480 INF: FPGA: Recv YRDPOS 153256
17-03-18 04:10:14.164 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:10:14.164 -07 000000438 INF: Y Motor: Encoder = 153256 = motor step 119731.3 = 74.8320 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 04:10:14.174 -07 000000438 INF: Y Motor: After move to 74.852608, error = -0.020576, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 04:10:14.174 -07 000000438 INF: Y Motor: Position error after settling (table move) = -42 encoder counts (-0.021 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 04:10:14.174 -07 000000438 INF: Y Motor: Moved to 74.8320 after 1430 ms (table move)
17-03-18 04:10:14.184 -07 000000437 INF: Z Motor: EndOfMoveAbsStepped: target = -0.133248 mm (DAC = 29108)
17-03-18 04:10:14.184 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:10:14.184 -07 000000447 INF: FPGA: Recv ZSGSRD 30034
17-03-18 04:10:14.194 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 04:10:14.194 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:10:14.194 -07 000000590 INF: FPGA: Recv ZSGSRD 30028
17-03-18 04:10:14.204 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:10:14.204 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:10:14.204 -07 000000438 INF: FPGA: Recv ZSGSRD 30030
17-03-18 04:10:14.214 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:10:14.214 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:10:14.214 -07 000000447 INF: FPGA: Recv ZSGSRD 30026
17-03-18 04:10:14.224 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:10:14.224 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:10:14.224 -07 000000501 INF: FPGA: Recv ZSGSRD 30029
17-03-18 04:10:14.234 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:10:14.234 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:10:14.234 -07 000000455 INF: FPGA: Recv ZSGSRD 30037
17-03-18 04:10:14.244 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:10:14.244 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:10:14.244 -07 000000626 INF: FPGA: Recv ZSGSRD 30038
17-03-18 04:10:14.254 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:10:14.254 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:10:14.254 -07 000000611 INF: FPGA: Recv ZSGSRD 30036
17-03-18 04:10:14.264 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:10:14.264 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:10:14.264 -07 000000480 INF: FPGA: Recv ZSGSRD 30034
17-03-18 04:10:14.274 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:10:14.274 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:10:14.274 -07 000000618 INF: FPGA: Recv ZSGSRD 30030
17-03-18 04:10:14.284 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:10:14.284 -07 000000437 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:10:14.284 -07 000000625 INF: FPGA: Recv ZPIEZORD 25778
17-03-18 04:10:14.294 -07 000000437 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:10:14.294 -07 000000437 INF: Z Motor: Piezo is near 35.1 V (nominally 0 to 100 V), expect near 44.4 V, since DAC is at 4.442 V. Piezo Error = -9.3 V.
17-03-18 04:10:14.294 -07 000000437 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.2 um, Read 10 ADC samples: Avg = 30032 (-132.5 uncal um), Error = 0.8 uncal um, Median = 30032 (-132.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 30026 (-132.4 uncal um), Max = 30038 (-132.5 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 04:10:14.294 -07 000000437 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30032, posNoise = 6, negNoise = 6
17-03-18 04:10:14.294 -07 000000437 INF: Z Motor: After move to -0.133248, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:10:14.294 -07 000000437 INF: Z Motor: Settle wait time = 1433 ms, measure time = 108 ms (allowed 150 ms), total time = 1541 ms
17-03-18 04:10:14.294 -07 000000437 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-18 04:10:14.344 -07 000000437 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1593 ms
17-03-18 04:10:14.344 -07 000000437 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 04:10:14.344 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:10:14.344 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:10:14.344 -07 000000487 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:10:14.344 -07 000000438 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:10:14.344 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 04:10:14.344 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:10:14.344 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 04:10:14.344 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 04:10:14.354 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 04:10:14.354 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 04:10:14.364 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-18 04:10:14.364 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-18 04:10:14.364 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 04:10:14.414 -07 000000608 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 04:10:14.714 -07 000000585 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 04:10:14.714 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 04:10:14.714 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 04:10:14.714 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 608668944, 0x0, 559484976) start.
17-03-18 04:10:14.754 -07 000000618 INF: FPGA: Recv @CAMSNAP 380
17-03-18 04:10:14.754 -07 000000590 INF: FPGA: Recv CAMSNAP
17-03-18 04:10:14.754 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 383 ms to get response, and 385 ms overall
17-03-18 04:10:14.834 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 608668944, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 04:10:14.834 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:10:14.834 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 04:10:14.834 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 04:10:14.854 -07 000000437 INF: Autofocus start
17-03-18 04:10:14.854 -07 000000437 INF: MeasureProfile start
17-03-18 04:10:14.854 -07 000000447 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 04:10:14.854 -07 000000608 INF: FPGA: Recv FOCMRRCUR 
17-03-18 04:10:14.864 -07 000000447 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 04:10:14.864 -07 000000447 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 04:10:14.864 -07 000000437 INF: MeasureProfile done
17-03-18 04:10:14.864 -07 000000437 INF: X=32  Z correction [um]=0.1299841
17-03-18 04:10:14.864 -07 000000437 INF: Autofocus finished
17-03-18 04:10:15.064 -07 000000579 INF: FPGA: Recv FOCMRRIMG
17-03-18 04:10:15.064 -07 000000447 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 195 ms to get response, and 204 ms overall
17-03-18 04:10:15.064 -07 000000610 INF: ------------ Scan Snapping tile 19 at Y-position 74.83203125, Z-position -0.1332552910525. ----------
17-03-18 04:10:15.074 -07 000000610 INF: Cycle	121	Tile	19	Exposure Settings		A	415	G	200	T	200	C	415
17-03-18 04:10:15.074 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27649, sync = True, waitForSettling = True)
17-03-18 04:10:15.074 -07 000000610 INF: Z Motor: Moving to -0.126569 mm, started at -0.133255 mm, distance = 6.69 um
17-03-18 04:10:15.074 -07 000000610 INF: FPGA: Xmit ZDACW 27649\n [Z Motor]
17-03-18 04:10:15.074 -07 000000437 INF: FPGA: Recv ZDACW
17-03-18 04:10:15.084 -07 000000610 INF: FPGA: 'ZDACW 27649' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 04:10:15.084 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 04:10:15.084 -07 000000474 INF: FPGA: Recv ZDACR 27649
17-03-18 04:10:15.094 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:10:15.094 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 04:10:15.244 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:10:15.244 -07 000000012 INF: FPGA: Recv ZSGSRD 28996
17-03-18 04:10:15.254 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 04:10:15.254 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:10:15.254 -07 000000487 INF: FPGA: Recv ZSGSRD 28995
17-03-18 04:10:15.264 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:10:15.264 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:10:15.264 -07 000000447 INF: FPGA: Recv ZSGSRD 28990
17-03-18 04:10:15.274 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:10:15.274 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:10:15.274 -07 000000512 INF: FPGA: Recv ZSGSRD 28992
17-03-18 04:10:15.284 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:10:15.284 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:10:15.284 -07 000000590 INF: FPGA: Recv ZSGSRD 28992
17-03-18 04:10:15.294 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:10:15.294 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:10:15.294 -07 000000012 INF: FPGA: Recv ZSGSRD 28996
17-03-18 04:10:15.304 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:10:15.304 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:10:15.304 -07 000000487 INF: FPGA: Recv ZSGSRD 28990
17-03-18 04:10:15.314 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:10:15.314 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:10:15.314 -07 000000438 INF: FPGA: Recv ZSGSRD 28986
17-03-18 04:10:15.324 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:10:15.324 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:10:15.324 -07 000000579 INF: FPGA: Recv ZSGSRD 28992
17-03-18 04:10:15.334 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:10:15.334 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 04:10:15.334 -07 000000590 INF: FPGA: Recv ZSGSRD 28989
17-03-18 04:10:15.344 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:10:15.344 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 04:10:15.344 -07 000000579 INF: FPGA: Recv ZPIEZORD 24429
17-03-18 04:10:15.354 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 04:10:15.354 -07 000000610 INF: Z Motor: Piezo is near 32.2 V (nominally 0 to 100 V), expect near 42.2 V, since DAC is at 4.219 V. Piezo Error = -10.0 V.
17-03-18 04:10:15.354 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -126.6 um, Read 10 ADC samples: Avg = 28992 (-125.8 uncal um), Error = 0.8 uncal um, Median = 28992 (-125.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 28986 (-125.8 uncal um), Max = 28996 (-125.8 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 04:10:15.354 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 28992, posNoise = 4, negNoise = 6
17-03-18 04:10:15.354 -07 000000610 INF: Z Motor: After move to -0.126569, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 04:10:15.354 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-18 04:10:15.354 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 04:10:15.354 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 04:10:15.354 -07 000000012 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 04:10:15.354 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 04:10:15.354 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 04:10:15.354 -07 000000438 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 04:10:15.354 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 04:10:15.354 -07 000000455 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 04:10:15.354 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 04:10:15.354 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 04:10:15.354 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 04:10:15.354 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 04:10:15.364 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 04:10:15.364 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 04:10:15.364 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 04:10:15.364 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 04:10:15.374 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-18 04:10:15.374 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 04:10:15.374 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 11 ms.
17-03-18 04:10:15.374 -07 000000438 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 04:10:15.374 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 415 415 200 200 27826 150\n [Camera]
17-03-18 04:10:15.574 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 04:10:15.994 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 607
17-03-18 04:10:15.994 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 607
17-03-18 04:10:15.994 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:10:15.994 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 607
17-03-18 04:10:15.994 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 607
17-03-18 04:10:15.994 -07 000000611 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:10:16.004 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:10:16.004 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) start.
17-03-18 04:10:16.004 -07 000000611 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:10:16.004 -07 000000611 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) start.
17-03-18 04:10:16.184 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 27826 800
17-03-18 04:10:16.334 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP turning grn on 950
17-03-18 04:10:16.374 -07 000000611 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) end. Duration was 370 ms.
17-03-18 04:10:16.374 -07 000000611 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 371 ms.
17-03-18 04:10:16.374 -07 000000611 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:10:16.384 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) end. Duration was 375 ms.
17-03-18 04:10:16.384 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-18 04:10:16.384 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:10:16.384 -07 000000611 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 04:10:16.384 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 04:10:16.384 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-18 04:10:16.394 -07 000000611 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-18 04:10:16.534 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1150
17-03-18 04:10:16.534 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1150
17-03-18 04:10:16.534 -07 000000585 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 04:10:16.654 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1150
17-03-18 04:10:16.654 -07 000000444 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 04:10:16.654 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1150
17-03-18 04:10:16.654 -07 000000585 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 04:10:16.654 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 120. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1718, R2=1787, Total=3505. Warn if over 250 bubbles per interval.
17-03-18 04:10:16.664 -07 000000437 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 04:10:16.664 -07 000000585 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 04:10:16.664 -07 000000437 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 04:10:16.664 -07 000000437 INF: Camera: sBCa_ReadImage(785074704, 2334719600, 0x0, 418435064) start.
17-03-18 04:10:16.724 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP 1343
17-03-18 04:10:16.724 -07 000000618 INF: FPGA: Recv CAMDBLSNAP
17-03-18 04:10:16.724 -07 000000610 INF: FPGA: 'CAMDBLSNAP 415 415 200 200 27826 150' command took 2 ms to send, 1338 ms to get response, and 1350 ms overall
17-03-18 04:10:17.054 -07 000000437 INF: Camera: sBCa_ReadImage(785074704, 2334719600, 0x0, 418435064) end. Duration was 397 ms.
17-03-18 04:10:17.054 -07 000000437 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 04:10:17.054 -07 000000437 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:10:17.064 -07 000000585 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 400 ms.
17-03-18 04:10:17.064 -07 000000585 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 04:10:17.064 -07 000000585 INF: Camera: CopyActivePixFullImage start.
17-03-18 04:10:17.064 -07 000000437 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:10:17.064 -07 000000585 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 04:10:17.064 -07 000000585 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 527 ms.
17-03-18 04:10:17.064 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) start.
17-03-18 04:10:17.074 -07 000000437 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-18 04:10:17.104 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) end. Duration was 42 ms.
17-03-18 04:10:17.104 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) start.
17-03-18 04:10:17.154 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) end. Duration was 42 ms.
17-03-18 04:10:17.164 -07 000000610 INF: Enabling Skipping AutoFocus in the next 0 cycles.
17-03-18 04:10:17.164 -07 000000610 INF: Imaging Cycle 121: ScanTilesCommand Cycle 121 time end. Duration was 161624 ms.
17-03-18 04:10:17.164 -07 000000610 INF: =================== Cycle #121 ===================
17-03-18 04:10:17.164 -07 000000610 INF: ===================  ===================
17-03-18 04:10:17.164 -07 000000608 INF: FPGA: Xmit EXLED1ADCR\n [GreenLED]
17-03-18 04:10:17.174 -07 000000012 INF: FPGA: Recv EXLED1ADCR 26
17-03-18 04:10:17.174 -07 000000608 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 04:10:17.174 -07 000000608 INF: GreenLED: Using Green data: Photodiode ADC 26 --> 0.0 mW (old method), or 1.9 mW (new method). Difference = 1.9 mW
17-03-18 04:10:17.174 -07 000000608 INF: Predictive Diagnostic Log Cycle Entry Metrics: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 121, FrontChillerTemperature: 4.011254, FrontChillerHeatSinkTemperature: 0.371242, AmbientTemperature: 18.63496, FlowCellCompartmentTemperature: 21.99836, FlowCellTargetTemperature: 22, FlowCellHeatSinkTemperature: 18.35031, GreenLEDSensorTemperature: 27.22525, PhotodiodePowerAdcGreen: 26, PhotodiodePowerMwGreen: 1.927049
17-03-18 04:10:17.264 -07 000000610 INF: Y-Drift Offset assigned 0.002126916.